Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78590.t1 | XP_003626273.1 | 97.5 | 489 | 12 | 0 | 1 | 489 | 1 | 489 | 2.80E-262 | 914.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78590.t1 | Q9SVT8 | 76.4 | 478 | 108 | 2 | 2 | 474 | 3 | 480 | 1.6e-202 | 706.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78590.t1 | G7KYM3 | 97.5 | 489 | 12 | 0 | 1 | 489 | 1 | 489 | 2.0e-262 | 914.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78590 | MS.gene005052 | PPI |
| MS.gene78590 | MS.gene74897 | PPI |
| MS.gene78590 | MS.gene058775 | PPI |
| MS.gene78590 | MS.gene005054 | PPI |
| MS.gene78590 | MS.gene058774 | PPI |
| MS.gene07605 | MS.gene78590 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78590.t1 | MTR_7g113340 | 97.546 | 489 | 12 | 0 | 1 | 489 | 1 | 489 | 0.0 | 967 |
| MS.gene78590.t1 | MTR_7g098930 | 89.796 | 490 | 49 | 1 | 1 | 489 | 1 | 490 | 0.0 | 882 |
| MS.gene78590.t1 | MTR_1g045550 | 73.849 | 478 | 123 | 2 | 1 | 477 | 1 | 477 | 0.0 | 730 |
| MS.gene78590.t1 | MTR_1g079760 | 72.188 | 489 | 130 | 3 | 1 | 485 | 1 | 487 | 0.0 | 698 |
| MS.gene78590.t1 | MTR_3g463730 | 65.169 | 445 | 148 | 5 | 41 | 483 | 8 | 447 | 0.0 | 574 |
| MS.gene78590.t1 | MTR_7g115050 | 28.030 | 396 | 231 | 16 | 112 | 489 | 100 | 459 | 4.44e-22 | 99.4 |
| MS.gene78590.t1 | MTR_1g036410 | 26.439 | 469 | 278 | 17 | 47 | 486 | 24 | 454 | 1.10e-20 | 95.1 |
| MS.gene78590.t1 | MTR_8g074750 | 25.328 | 458 | 282 | 14 | 47 | 480 | 30 | 451 | 3.80e-17 | 84.3 |
| MS.gene78590.t1 | MTR_7g069640 | 27.224 | 371 | 225 | 10 | 123 | 485 | 129 | 462 | 6.36e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene78590.t1 | AT4G13510 | 72.385 | 478 | 128 | 3 | 5 | 481 | 2 | 476 | 0.0 | 726 |
| MS.gene78590.t1 | AT4G28700 | 75.732 | 478 | 111 | 2 | 2 | 474 | 3 | 480 | 0.0 | 719 |
| MS.gene78590.t1 | AT3G24290 | 73.109 | 476 | 125 | 2 | 5 | 480 | 6 | 478 | 0.0 | 719 |
| MS.gene78590.t1 | AT3G24300 | 71.250 | 480 | 134 | 3 | 5 | 483 | 6 | 482 | 0.0 | 707 |
| MS.gene78590.t1 | AT1G64780 | 71.984 | 489 | 128 | 5 | 2 | 483 | 4 | 490 | 0.0 | 699 |
| MS.gene78590.t1 | AT2G38290 | 26.013 | 469 | 283 | 15 | 47 | 488 | 20 | 451 | 1.71e-14 | 76.3 |
| MS.gene78590.t1 | AT2G38290 | 27.596 | 366 | 216 | 12 | 135 | 488 | 7 | 335 | 7.72e-13 | 70.1 |
Find 110 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCACATGTTGTTCAGATTT+TGG | 0.184817 | 7.4:+3446658 | MS.gene78590:CDS |
| CTTAATATTGTAAAAGCTTA+TGG | 0.207812 | 7.4:+3446197 | MS.gene78590:CDS |
| GGTTCTCCTGATAGACCTTA+TGG | 0.231859 | 7.4:+3446602 | MS.gene78590:CDS |
| TTCATGGTGGTTGTGGTACT+TGG | 0.252134 | 7.4:+3446522 | MS.gene78590:CDS |
| CGATTGTTGCTCATTGGTTT+TGG | 0.263369 | 7.4:+3445913 | MS.gene78590:CDS |
| TAGTGGTACTTTAGTTGTTT+TGG | 0.264485 | 7.4:+3446124 | MS.gene78590:CDS |
| TACTTCAAATGCACGTCTTT+TGG | 0.271844 | 7.4:-3446840 | None:intergenic |
| TATGTGAATGAAGTTTATTC+TGG | 0.286396 | 7.4:+3446581 | MS.gene78590:CDS |
| GTACCACTATGTCCTCTAAT+TGG | 0.291911 | 7.4:-3446110 | None:intergenic |
| GGGAGGTGGTGGAAGATTAT+TGG | 0.298602 | 7.4:+3446634 | MS.gene78590:CDS |
| CATTTAGTTGGTGCTGTTGC+TGG | 0.308317 | 7.4:+3446023 | MS.gene78590:CDS |
| TATGGTCAATGGAGTGCTAT+TGG | 0.327941 | 7.4:+3446236 | MS.gene78590:CDS |
| TGCTTGGGTGAGTATTACTA+TGG | 0.328895 | 7.4:+3446688 | MS.gene78590:CDS |
| TGGCAAAAGCCCATTGAAAA+AGG | 0.329634 | 7.4:-3445794 | None:intergenic |
| TGATCAAATCTACCAATTCT+TGG | 0.336025 | 7.4:-3446071 | None:intergenic |
| AACAATCCATAAGGTCTATC+AGG | 0.338141 | 7.4:-3446608 | None:intergenic |
| CTTGAAGCTGCACAACTTCA+TGG | 0.342709 | 7.4:+3446506 | MS.gene78590:CDS |
| GCAGCTCTCACTACTTTGTT+TGG | 0.346350 | 7.4:+3446296 | MS.gene78590:CDS |
| TGTGGTGTTGTTCATTTAGT+TGG | 0.354549 | 7.4:+3446011 | MS.gene78590:CDS |
| TTGTGGATTTGTTGCTGCTT+GGG | 0.357633 | 7.4:+3446433 | MS.gene78590:CDS |
| TCATGGTGGTTGTGGTACTT+GGG | 0.382463 | 7.4:+3446523 | MS.gene78590:CDS |
| CCATGGGCTGCAATTATTTG+TGG | 0.385626 | 7.4:+3446416 | MS.gene78590:CDS |
| TTTATCCGATTGTTGCTCAT+TGG | 0.385751 | 7.4:+3445907 | MS.gene78590:CDS |
| CGAGGTAGAGATGGAAGGTT+TGG | 0.387091 | 7.4:+3446760 | MS.gene78590:CDS |
| TTACTTTGGTTTGGTTGGTA+TGG | 0.390915 | 7.4:+3446155 | MS.gene78590:CDS |
| ATTGGTTAACATAATGTTCA+TGG | 0.391374 | 7.4:-3445628 | None:intergenic |
| TGCTGATGGTTGGGGTAGTC+CGG | 0.394425 | 7.4:+3445938 | MS.gene78590:CDS |
| ATGGAGGTCGGAGGCGGAAC+AGG | 0.394802 | 7.4:-3445409 | None:intergenic |
| GGATTGTTGTTGGGAGGTGG+TGG | 0.409187 | 7.4:+3446623 | MS.gene78590:CDS |
| GGTGTTCTGTTGTGGATCCA+TGG | 0.413692 | 7.4:+3446399 | MS.gene78590:CDS |
| TTTGTGGATTTGTTGCTGCT+TGG | 0.421882 | 7.4:+3446432 | MS.gene78590:CDS |
| AATGTTCTTGATGCCGCAAT+AGG | 0.425840 | 7.4:+3445648 | MS.gene78590:CDS |
| TTTATTGAAGGACCAAGAAT+TGG | 0.431351 | 7.4:+3446059 | MS.gene78590:CDS |
| CGCTGCTGCCGAGGAGAGCA+TGG | 0.436798 | 7.4:-3445428 | None:intergenic |
| TTTGGTAAACGTATGCAAAC+AGG | 0.437183 | 7.4:+3446314 | MS.gene78590:CDS |
| GGTGAAAGTGTTCCAATTAG+AGG | 0.444019 | 7.4:+3446098 | MS.gene78590:CDS |
| GGTGAAAGTGGTAATTACTA+TGG | 0.445774 | 7.4:+3446218 | MS.gene78590:CDS |
| ATGGTCAATGGAGTGCTATT+GGG | 0.445910 | 7.4:+3446237 | MS.gene78590:CDS |
| TATGGATTGTTGTTGGGAGG+TGG | 0.448346 | 7.4:+3446620 | MS.gene78590:CDS |
| TTCATAAATTGAATTTGCTT+AGG | 0.449482 | 7.4:+3446729 | MS.gene78590:CDS |
| GATGTATGTAATGGTTTGCT+TGG | 0.461730 | 7.4:+3446353 | MS.gene78590:CDS |
| AGACCTTATGGATTGTTGTT+GGG | 0.467628 | 7.4:+3446614 | MS.gene78590:CDS |
| GCTGTCACAACTACATTGGC+TGG | 0.468245 | 7.4:+3446266 | MS.gene78590:CDS |
| TTTAACTAGCCATGGTGGAT+TGG | 0.471431 | 7.4:+3446784 | MS.gene78590:CDS |
| TTTCCGATGAAACCGTTTGA+AGG | 0.478481 | 7.4:-3445717 | None:intergenic |
| GTATGTAATGGTTTGCTTGG+TGG | 0.479792 | 7.4:+3446356 | MS.gene78590:CDS |
| GAAGCCGCCACAGATGTATT+CGG | 0.481005 | 7.4:-3445469 | None:intergenic |
| AACTGCAGGGTGTTCTGTTG+TGG | 0.482968 | 7.4:+3446391 | MS.gene78590:CDS |
| TAGACCTTATGGATTGTTGT+TGG | 0.483036 | 7.4:+3446613 | MS.gene78590:CDS |
| TGGAGTTTGCGCTGCTGCCG+AGG | 0.483187 | 7.4:-3445437 | None:intergenic |
| GTAAAAGCTTATGGTGAAAG+TGG | 0.486953 | 7.4:+3446206 | MS.gene78590:CDS |
| GTGGTAATTACTATGGTCAA+TGG | 0.487253 | 7.4:+3446225 | MS.gene78590:CDS |
| AACAATCGGATAAACTAAAC+CGG | 0.492578 | 7.4:-3445898 | None:intergenic |
| ACACCTTCAAACGGTTTCAT+CGG | 0.497352 | 7.4:+3445714 | MS.gene78590:CDS |
| TTGAAGGTGTTCCAAAAGCT+AGG | 0.502612 | 7.4:-3445701 | None:intergenic |
| GACGTGCATTTGAAGTATGA+TGG | 0.505539 | 7.4:+3446846 | MS.gene78590:CDS |
| GTCTTCACCCGAGGTAGAGA+TGG | 0.506405 | 7.4:+3446751 | MS.gene78590:CDS |
| GAGAGCATGGAGGTCGGAGG+CGG | 0.507437 | 7.4:-3445415 | None:intergenic |
| CAAGGTAAGCTGAGAAGAGA+AGG | 0.507589 | 7.4:-3445545 | None:intergenic |
| GATTGGCTTATGAGTATCGT+GGG | 0.518680 | 7.4:+3446801 | MS.gene78590:CDS |
| CATGGTGGTTGTGGTACTTG+GGG | 0.523447 | 7.4:+3446524 | MS.gene78590:CDS |
| AAACCTTCCATCTCTACCTC+GGG | 0.523781 | 7.4:-3446758 | None:intergenic |
| GTGTTCTGTTGTGGATCCAT+GGG | 0.527050 | 7.4:+3446400 | MS.gene78590:CDS |
| TCCGACCTCCATGCTCTCCT+CGG | 0.531527 | 7.4:+3445420 | MS.gene78590:CDS |
| AGTGTTAGTGATGTATGTAA+TGG | 0.532742 | 7.4:+3446344 | MS.gene78590:CDS |
| AACGTATGCAAACAGGCCAT+TGG | 0.534415 | 7.4:+3446321 | MS.gene78590:CDS |
| CAAAACCAATGAGCAACAAT+CGG | 0.537973 | 7.4:-3445912 | None:intergenic |
| GTCGATGAATTTGTTTGCGA+CGG | 0.538058 | 7.4:-3445496 | None:intergenic |
| CCTCCCAACAACAATCCATA+AGG | 0.542714 | 7.4:-3446617 | None:intergenic |
| GGTTTGGATTTAACTAGCCA+TGG | 0.543424 | 7.4:+3446776 | MS.gene78590:CDS |
| GCACAACTTCATGGTGGTTG+TGG | 0.547365 | 7.4:+3446515 | MS.gene78590:CDS |
| TGTGATACCTGCTGCAGCAA+TGG | 0.548951 | 7.4:-3445814 | None:intergenic |
| TGAAGGTGTTCCAAAAGCTA+GGG | 0.557787 | 7.4:-3445700 | None:intergenic |
| CCACAAATAATTGCAGCCCA+TGG | 0.565527 | 7.4:-3446416 | None:intergenic |
| CATAGCAAAACCTAATTGCA+TGG | 0.568771 | 7.4:-3445574 | None:intergenic |
| CGTAATCAAAAGATTGTGAA+GGG | 0.572177 | 7.4:-3445764 | None:intergenic |
| ATGGTGGTTGTGGTACTTGG+GGG | 0.572938 | 7.4:+3446525 | MS.gene78590:CDS |
| CCTTATGGATTGTTGTTGGG+AGG | 0.579167 | 7.4:+3446617 | MS.gene78590:CDS |
| GATGTATTCGGCAGCAGCAG+TGG | 0.582784 | 7.4:-3445457 | None:intergenic |
| GTTCTTGATGCCGCAATAGG+TGG | 0.583754 | 7.4:+3445651 | MS.gene78590:CDS |
| TGAAGTTGTGCAGCTTCAAG+AGG | 0.588771 | 7.4:-3446503 | None:intergenic |
| GGATTGGCTTATGAGTATCG+TGG | 0.592798 | 7.4:+3446800 | MS.gene78590:CDS |
| GTAAGTGTTGTCGACAGCAT+AGG | 0.594110 | 7.4:-3445523 | None:intergenic |
| ACAATATTAAGAAAAGAACC+AGG | 0.596151 | 7.4:-3446185 | None:intergenic |
| GGCTTATGAGTATCGTGGGG+AGG | 0.600434 | 7.4:+3446805 | MS.gene78590:CDS |
| CAAACCTTCCATCTCTACCT+CGG | 0.602079 | 7.4:-3446759 | None:intergenic |
| CCGTAATCAAAAGATTGTGA+AGG | 0.603065 | 7.4:-3445765 | None:intergenic |
| TCACCCGAGGTAGAGATGGA+AGG | 0.608823 | 7.4:+3446755 | MS.gene78590:CDS |
| GCCGAGGAGAGCATGGAGGT+CGG | 0.609685 | 7.4:-3445421 | None:intergenic |
| TATTGCGGCATCAAGAACAT+TGG | 0.610961 | 7.4:-3445646 | None:intergenic |
| GACAGCTGTCACAACTACAT+TGG | 0.613672 | 7.4:+3446262 | MS.gene78590:CDS |
| ATACATCACTAACACTCCAA+TGG | 0.614445 | 7.4:-3446337 | None:intergenic |
| GCTGCAGCAGGTATCACAAG+TGG | 0.627953 | 7.4:+3445819 | MS.gene78590:CDS |
| TTGGATTTAACTAGCCATGG+TGG | 0.630060 | 7.4:+3446779 | MS.gene78590:CDS |
| CAATATTAAGAAAAGAACCA+GGG | 0.637822 | 7.4:-3446184 | None:intergenic |
| GTCAATGGAGTGCTATTGGG+AGG | 0.640296 | 7.4:+3446240 | MS.gene78590:CDS |
| GTTCCAATTAGAGGACATAG+TGG | 0.643396 | 7.4:+3446107 | MS.gene78590:CDS |
| GCTTGGGTGAGTATTACTAT+GGG | 0.643839 | 7.4:+3446689 | MS.gene78590:CDS |
| GGAACAGGTGAAAGTAGCCA+TGG | 0.643886 | 7.4:-3445394 | None:intergenic |
| AATTGGTAGATTTGATCACG+AGG | 0.645044 | 7.4:+3446076 | MS.gene78590:CDS |
| ATGGTTGGGGTAGTCCGGTG+CGG | 0.658541 | 7.4:+3445943 | MS.gene78590:CDS |
| GAGGAGAGCATGGAGGTCGG+AGG | 0.668518 | 7.4:-3445418 | None:intergenic |
| GCTGCTGCCGAATACATCTG+TGG | 0.675707 | 7.4:+3445462 | MS.gene78590:CDS |
| TTTGCTTAGGTCTTCACCCG+AGG | 0.680243 | 7.4:+3446742 | MS.gene78590:CDS |
| ATTGGTAGATTTGATCACGA+GGG | 0.681956 | 7.4:+3446077 | MS.gene78590:CDS |
| GCTGCCGAATACATCTGTGG+CGG | 0.687449 | 7.4:+3445465 | MS.gene78590:CDS |
| ACTCATAAGCCAATCCACCA+TGG | 0.688384 | 7.4:-3446793 | None:intergenic |
| TGCTGCCGAGGAGAGCATGG+AGG | 0.694743 | 7.4:-3445425 | None:intergenic |
| GAAGCTGCACAACTTCATGG+TGG | 0.721100 | 7.4:+3446509 | MS.gene78590:CDS |
| ATTGGCTTATGAGTATCGTG+GGG | 0.734064 | 7.4:+3446802 | MS.gene78590:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTAATATTGTAAAAGCTTA+TGG | + | chr7.4:3446197-3446216 | MS.gene78590:CDS | 20.0% |
| !!! | ATTTATTCATCGTTTTTAAC+CGG | + | chr7.4:3445879-3445898 | MS.gene78590:CDS | 20.0% |
| !!! | TTCATAAATTGAATTTGCTT+AGG | + | chr7.4:3446729-3446748 | MS.gene78590:CDS | 20.0% |
| ! | ACAATATTAAGAAAAGAACC+AGG | - | chr7.4:3446188-3446207 | None:intergenic | 25.0% |
| ! | ATTGGTTAACATAATGTTCA+TGG | - | chr7.4:3445631-3445650 | None:intergenic | 25.0% |
| ! | CAATATTAAGAAAAGAACCA+GGG | - | chr7.4:3446187-3446206 | None:intergenic | 25.0% |
| ! | TATGTGAATGAAGTTTATTC+TGG | + | chr7.4:3446581-3446600 | MS.gene78590:CDS | 25.0% |
| !!! | GGCATTTTTTTCTATGTTTT+TGG | + | chr7.4:3445672-3445691 | MS.gene78590:CDS | 25.0% |
| !!! | TTCATCGGAAAACATTTTTT+TGG | + | chr7.4:3445729-3445748 | MS.gene78590:CDS | 25.0% |
| !!! | TTTTGGGAACTTTTTTACTT+TGG | + | chr7.4:3446141-3446160 | MS.gene78590:CDS | 25.0% |
| AACAATCGGATAAACTAAAC+CGG | - | chr7.4:3445901-3445920 | None:intergenic | 30.0% | |
| AGTGTTAGTGATGTATGTAA+TGG | + | chr7.4:3446344-3446363 | MS.gene78590:CDS | 30.0% | |
| CGTAATCAAAAGATTGTGAA+GGG | - | chr7.4:3445767-3445786 | None:intergenic | 30.0% | |
| TGATCAAATCTACCAATTCT+TGG | - | chr7.4:3446074-3446093 | None:intergenic | 30.0% | |
| TTTATTGAAGGACCAAGAAT+TGG | + | chr7.4:3446059-3446078 | MS.gene78590:CDS | 30.0% | |
| ! | CATAATGTTCATGGTGTTTT+TGG | - | chr7.4:3445622-3445641 | None:intergenic | 30.0% |
| ! | TAGTGGTACTTTAGTTGTTT+TGG | + | chr7.4:3446124-3446143 | MS.gene78590:CDS | 30.0% |
| !! | AGTGGTACTTTAGTTGTTTT+GGG | + | chr7.4:3446125-3446144 | MS.gene78590:CDS | 30.0% |
| !! | CCTTCACAATCTTTTGATTA+CGG | + | chr7.4:3445765-3445784 | MS.gene78590:CDS | 30.0% |
| !! | CTTCACAATCTTTTGATTAC+GGG | + | chr7.4:3445766-3445785 | MS.gene78590:CDS | 30.0% |
| !! | GAAAATCTTTTGTTTGGTTC+TGG | + | chr7.4:3445969-3445988 | MS.gene78590:CDS | 30.0% |
| !!! | CTTTTTTACTTTGGTTTGGT+TGG | + | chr7.4:3446150-3446169 | MS.gene78590:CDS | 30.0% |
| !!! | GGAACTTTTTTACTTTGGTT+TGG | + | chr7.4:3446146-3446165 | MS.gene78590:CDS | 30.0% |
| AACAATCCATAAGGTCTATC+AGG | - | chr7.4:3446611-3446630 | None:intergenic | 35.0% | |
| AATTGGTAGATTTGATCACG+AGG | + | chr7.4:3446076-3446095 | MS.gene78590:CDS | 35.0% | |
| ATACATCACTAACACTCCAA+TGG | - | chr7.4:3446340-3446359 | None:intergenic | 35.0% | |
| ATTGGTAGATTTGATCACGA+GGG | + | chr7.4:3446077-3446096 | MS.gene78590:CDS | 35.0% | |
| CAAAACCAATGAGCAACAAT+CGG | - | chr7.4:3445915-3445934 | None:intergenic | 35.0% | |
| CATAGCAAAACCTAATTGCA+TGG | - | chr7.4:3445577-3445596 | None:intergenic | 35.0% | |
| CCGTAATCAAAAGATTGTGA+AGG | - | chr7.4:3445768-3445787 | None:intergenic | 35.0% | |
| CTAATTGCATGGCAAAAACA+AGG | - | chr7.4:3445566-3445585 | None:intergenic | 35.0% | |
| GAAAAAAATGCCACCTATTG+CGG | - | chr7.4:3445664-3445683 | None:intergenic | 35.0% | |
| GGTGAAAGTGGTAATTACTA+TGG | + | chr7.4:3446218-3446237 | MS.gene78590:CDS | 35.0% | |
| GTAAAAGCTTATGGTGAAAG+TGG | + | chr7.4:3446206-3446225 | MS.gene78590:CDS | 35.0% | |
| GTGGTAATTACTATGGTCAA+TGG | + | chr7.4:3446225-3446244 | MS.gene78590:CDS | 35.0% | |
| TTTATCCGATTGTTGCTCAT+TGG | + | chr7.4:3445907-3445926 | MS.gene78590:CDS | 35.0% | |
| TTTGGTAAACGTATGCAAAC+AGG | + | chr7.4:3446314-3446333 | MS.gene78590:CDS | 35.0% | |
| ! | AGACCTTATGGATTGTTGTT+GGG | + | chr7.4:3446614-3446633 | MS.gene78590:CDS | 35.0% |
| ! | CGGTCTGAAAATCTTTTGTT+TGG | + | chr7.4:3445963-3445982 | MS.gene78590:CDS | 35.0% |
| ! | TACTTCAAATGCACGTCTTT+TGG | - | chr7.4:3446843-3446862 | None:intergenic | 35.0% |
| ! | TAGACCTTATGGATTGTTGT+TGG | + | chr7.4:3446613-3446632 | MS.gene78590:CDS | 35.0% |
| ! | TGCACATGTTGTTCAGATTT+TGG | + | chr7.4:3446658-3446677 | MS.gene78590:CDS | 35.0% |
| !! | GATGTATGTAATGGTTTGCT+TGG | + | chr7.4:3446353-3446372 | MS.gene78590:CDS | 35.0% |
| !! | TGTGGTGTTGTTCATTTAGT+TGG | + | chr7.4:3446011-3446030 | MS.gene78590:CDS | 35.0% |
| !! | TTACTTTGGTTTGGTTGGTA+TGG | + | chr7.4:3446155-3446174 | MS.gene78590:CDS | 35.0% |
| !!! | ACGGGTTTTTCCTTTTTCAA+TGG | + | chr7.4:3445784-3445803 | MS.gene78590:CDS | 35.0% |
| !!! | CGGGTTTTTCCTTTTTCAAT+GGG | + | chr7.4:3445785-3445804 | MS.gene78590:CDS | 35.0% |
| !!! | CTTGTTTTTGCCATGCAATT+AGG | + | chr7.4:3445564-3445583 | MS.gene78590:CDS | 35.0% |
| !!! | GTTATTGATTTTGCTGGTTG+TGG | + | chr7.4:3445993-3446012 | MS.gene78590:CDS | 35.0% |
| !!! | TCTGGTGTTATTGATTTTGC+TGG | + | chr7.4:3445987-3446006 | MS.gene78590:CDS | 35.0% |
| !!! | TTTTGGGGTGCTTTTATTGA+AGG | + | chr7.4:3446047-3446066 | MS.gene78590:CDS | 35.0% |
| AATGTTCTTGATGCCGCAAT+AGG | + | chr7.4:3445648-3445667 | MS.gene78590:CDS | 40.0% | |
| ACACCTTCAAACGGTTTCAT+CGG | + | chr7.4:3445714-3445733 | MS.gene78590:CDS | 40.0% | |
| GCTTGGGTGAGTATTACTAT+GGG | + | chr7.4:3446689-3446708 | MS.gene78590:CDS | 40.0% | |
| GGTTTGGATTTAACTAGCCA+TGG | + | chr7.4:3446776-3446795 | MS.gene78590:CDS | 40.0% | |
| GTACCACTATGTCCTCTAAT+TGG | - | chr7.4:3446113-3446132 | None:intergenic | 40.0% | |
| GTTCCAATTAGAGGACATAG+TGG | + | chr7.4:3446107-3446126 | MS.gene78590:CDS | 40.0% | |
| TATTGCGGCATCAAGAACAT+TGG | - | chr7.4:3445649-3445668 | None:intergenic | 40.0% | |
| TGCTTGGGTGAGTATTACTA+TGG | + | chr7.4:3446688-3446707 | MS.gene78590:CDS | 40.0% | |
| TGGCAAAAGCCCATTGAAAA+AGG | - | chr7.4:3445797-3445816 | None:intergenic | 40.0% | |
| TTGGATTTAACTAGCCATGG+TGG | + | chr7.4:3446779-3446798 | MS.gene78590:CDS | 40.0% | |
| TTTCCGATGAAACCGTTTGA+AGG | - | chr7.4:3445720-3445739 | None:intergenic | 40.0% | |
| ! | AAAAGATTTTCAGACCGCAC+CGG | - | chr7.4:3445960-3445979 | None:intergenic | 40.0% |
| ! | ATGGTCAATGGAGTGCTATT+GGG | + | chr7.4:3446237-3446256 | MS.gene78590:CDS | 40.0% |
| ! | ATTGGCTTATGAGTATCGTG+GGG | + | chr7.4:3446802-3446821 | MS.gene78590:CDS | 40.0% |
| ! | GTCGATGAATTTGTTTGCGA+CGG | - | chr7.4:3445499-3445518 | None:intergenic | 40.0% |
| ! | GTTTTGCTGCTATAACTGCA+GGG | + | chr7.4:3446378-3446397 | MS.gene78590:CDS | 40.0% |
| ! | TATGGTCAATGGAGTGCTAT+TGG | + | chr7.4:3446236-3446255 | MS.gene78590:CDS | 40.0% |
| !! | GATTGGCTTATGAGTATCGT+GGG | + | chr7.4:3446801-3446820 | MS.gene78590:CDS | 40.0% |
| !! | GGTGAAAGTGTTCCAATTAG+AGG | + | chr7.4:3446098-3446117 | MS.gene78590:CDS | 40.0% |
| !! | GTATGTAATGGTTTGCTTGG+TGG | + | chr7.4:3446356-3446375 | MS.gene78590:CDS | 40.0% |
| !! | GTTGCTGCTTGGGTTTTAAT+TGG | + | chr7.4:3446443-3446462 | MS.gene78590:CDS | 40.0% |
| !! | TGAAGGTGTTCCAAAAGCTA+GGG | - | chr7.4:3445703-3445722 | None:intergenic | 40.0% |
| !! | TTGAAGGTGTTCCAAAAGCT+AGG | - | chr7.4:3445704-3445723 | None:intergenic | 40.0% |
| !! | TTGTGGATTTGTTGCTGCTT+GGG | + | chr7.4:3446433-3446452 | MS.gene78590:CDS | 40.0% |
| !! | TTTAACTAGCCATGGTGGAT+TGG | + | chr7.4:3446784-3446803 | MS.gene78590:CDS | 40.0% |
| !! | TTTGTGGATTTGTTGCTGCT+TGG | + | chr7.4:3446432-3446451 | MS.gene78590:CDS | 40.0% |
| !!! | AGATTTTGGCTGTTGTTGCT+TGG | + | chr7.4:3446672-3446691 | MS.gene78590:CDS | 40.0% |
| !!! | CGATTGTTGCTCATTGGTTT+TGG | + | chr7.4:3445913-3445932 | MS.gene78590:CDS | 40.0% |
| !!! | GATTTTGGCTGTTGTTGCTT+GGG | + | chr7.4:3446673-3446692 | MS.gene78590:CDS | 40.0% |
| !!! | GCTTTTGGAACACCTTCAAA+CGG | + | chr7.4:3445705-3445724 | MS.gene78590:CDS | 40.0% |
| !!! | GTTTTTGGCACGAATAGAAC+CGG | - | chr7.4:3445607-3445626 | None:intergenic | 40.0% |
| !!! | TTTGGTTTTGCCCTAGCTTT+TGG | + | chr7.4:3445690-3445709 | MS.gene78590:CDS | 40.0% |
| AAACCTTCCATCTCTACCTC+GGG | - | chr7.4:3446761-3446780 | None:intergenic | 45.0% | |
| AACGTATGCAAACAGGCCAT+TGG | + | chr7.4:3446321-3446340 | MS.gene78590:CDS | 45.0% | |
| ACTCATAAGCCAATCCACCA+TGG | - | chr7.4:3446796-3446815 | None:intergenic | 45.0% | |
| CAAACCTTCCATCTCTACCT+CGG | - | chr7.4:3446762-3446781 | None:intergenic | 45.0% | |
| CAAGGTAAGCTGAGAAGAGA+AGG | - | chr7.4:3445548-3445567 | None:intergenic | 45.0% | |
| CCACAAATAATTGCAGCCCA+TGG | - | chr7.4:3446419-3446438 | None:intergenic | 45.0% | |
| CCTCCCAACAACAATCCATA+AGG | - | chr7.4:3446620-3446639 | None:intergenic | 45.0% | |
| CTTGAAGCTGCACAACTTCA+TGG | + | chr7.4:3446506-3446525 | MS.gene78590:CDS | 45.0% | |
| GACAGCTGTCACAACTACAT+TGG | + | chr7.4:3446262-3446281 | MS.gene78590:CDS | 45.0% | |
| GCAGCTCTCACTACTTTGTT+TGG | + | chr7.4:3446296-3446315 | MS.gene78590:CDS | 45.0% | |
| GGTTCTCCTGATAGACCTTA+TGG | + | chr7.4:3446602-3446621 | MS.gene78590:CDS | 45.0% | |
| GTGTTCTGTTGTGGATCCAT+GGG | + | chr7.4:3446400-3446419 | MS.gene78590:CDS | 45.0% | |
| TCATGGTGGTTGTGGTACTT+GGG | + | chr7.4:3446523-3446542 | MS.gene78590:CDS | 45.0% | |
| TGAAGTTGTGCAGCTTCAAG+AGG | - | chr7.4:3446506-3446525 | None:intergenic | 45.0% | |
| TTCATGGTGGTTGTGGTACT+TGG | + | chr7.4:3446522-3446541 | MS.gene78590:CDS | 45.0% | |
| ! | CCATGGGCTGCAATTATTTG+TGG | + | chr7.4:3446416-3446435 | MS.gene78590:CDS | 45.0% |
| ! | CCTTATGGATTGTTGTTGGG+AGG | + | chr7.4:3446617-3446636 | MS.gene78590:CDS | 45.0% |
| ! | GGTTTTGCTGCTATAACTGC+AGG | + | chr7.4:3446377-3446396 | MS.gene78590:CDS | 45.0% |
| ! | GTAAGTGTTGTCGACAGCAT+AGG | - | chr7.4:3445526-3445545 | None:intergenic | 45.0% |
| ! | TATGGATTGTTGTTGGGAGG+TGG | + | chr7.4:3446620-3446639 | MS.gene78590:CDS | 45.0% |
| ! | TTTTGGTCTGCTGATGGTTG+GGG | + | chr7.4:3445930-3445949 | MS.gene78590:CDS | 45.0% |
| !! | CATTTAGTTGGTGCTGTTGC+TGG | + | chr7.4:3446023-3446042 | MS.gene78590:CDS | 45.0% |
| !! | GGATTGGCTTATGAGTATCG+TGG | + | chr7.4:3446800-3446819 | MS.gene78590:CDS | 45.0% |
| !! | GGTTTTGCTATGCTTTGTGC+CGG | + | chr7.4:3445585-3445604 | MS.gene78590:CDS | 45.0% |
| !! | GTTTTGGTCTGCTGATGGTT+GGG | + | chr7.4:3445929-3445948 | MS.gene78590:CDS | 45.0% |
| !!! | CATTGGTTTTGGTCTGCTGA+TGG | + | chr7.4:3445924-3445943 | MS.gene78590:CDS | 45.0% |
| !!! | GGTTGGTATGGTTTTAACCC+TGG | + | chr7.4:3446167-3446186 | MS.gene78590:CDS | 45.0% |
| !!! | TGGTGCTGTTGCTGGTTTTT+GGG | + | chr7.4:3446031-3446050 | MS.gene78590:CDS | 45.0% |
| !!! | TTGGTGCTGTTGCTGGTTTT+TGG | + | chr7.4:3446030-3446049 | MS.gene78590:CDS | 45.0% |
| ATGGTGGTTGTGGTACTTGG+GGG | + | chr7.4:3446525-3446544 | MS.gene78590:CDS | 50.0% | |
| CATGGTGGTTGTGGTACTTG+GGG | + | chr7.4:3446524-3446543 | MS.gene78590:CDS | 50.0% | |
| CGAGGTAGAGATGGAAGGTT+TGG | + | chr7.4:3446760-3446779 | MS.gene78590:CDS | 50.0% | |
| GAAGCCGCCACAGATGTATT+CGG | - | chr7.4:3445472-3445491 | None:intergenic | 50.0% | |
| GAAGCTGCACAACTTCATGG+TGG | + | chr7.4:3446509-3446528 | MS.gene78590:CDS | 50.0% | |
| GCACAACTTCATGGTGGTTG+TGG | + | chr7.4:3446515-3446534 | MS.gene78590:CDS | 50.0% | |
| GCTGTCACAACTACATTGGC+TGG | + | chr7.4:3446266-3446285 | MS.gene78590:CDS | 50.0% | |
| GGTGTTCTGTTGTGGATCCA+TGG | + | chr7.4:3446399-3446418 | MS.gene78590:CDS | 50.0% | |
| GTTCTTGATGCCGCAATAGG+TGG | + | chr7.4:3445651-3445670 | MS.gene78590:CDS | 50.0% | |
| TGTGATACCTGCTGCAGCAA+TGG | - | chr7.4:3445817-3445836 | None:intergenic | 50.0% | |
| TTTGCTTAGGTCTTCACCCG+AGG | + | chr7.4:3446742-3446761 | MS.gene78590:CDS | 50.0% | |
| ! | AACTGCAGGGTGTTCTGTTG+TGG | + | chr7.4:3446391-3446410 | MS.gene78590:CDS | 50.0% |
| ! | GTCAATGGAGTGCTATTGGG+AGG | + | chr7.4:3446240-3446259 | MS.gene78590:CDS | 50.0% |
| !! | GGGAGGTGGTGGAAGATTAT+TGG | + | chr7.4:3446634-3446653 | MS.gene78590:CDS | 50.0% |
| !! | GGTTTTGGTCTGCTGATGGT+TGG | + | chr7.4:3445928-3445947 | MS.gene78590:CDS | 50.0% |
| !!! | GGTGCTGTTGCTGGTTTTTG+GGG | + | chr7.4:3446032-3446051 | MS.gene78590:CDS | 50.0% |
| GATGTATTCGGCAGCAGCAG+TGG | - | chr7.4:3445460-3445479 | None:intergenic | 55.0% | |
| GCTGCAGCAGGTATCACAAG+TGG | + | chr7.4:3445819-3445838 | MS.gene78590:CDS | 55.0% | |
| GCTGCCGAATACATCTGTGG+CGG | + | chr7.4:3445465-3445484 | MS.gene78590:CDS | 55.0% | |
| GCTGCTGCCGAATACATCTG+TGG | + | chr7.4:3445462-3445481 | MS.gene78590:CDS | 55.0% | |
| GTCTTCACCCGAGGTAGAGA+TGG | + | chr7.4:3446751-3446770 | MS.gene78590:CDS | 55.0% | |
| TCACCCGAGGTAGAGATGGA+AGG | + | chr7.4:3446755-3446774 | MS.gene78590:CDS | 55.0% | |
| TGCTGATGGTTGGGGTAGTC+CGG | + | chr7.4:3445938-3445957 | MS.gene78590:CDS | 55.0% | |
| ! | GCTTTTGCCATTGCTGCAGC+AGG | + | chr7.4:3445807-3445826 | MS.gene78590:CDS | 55.0% |
| ! | GGATTGTTGTTGGGAGGTGG+TGG | + | chr7.4:3446623-3446642 | MS.gene78590:CDS | 55.0% |
| ! | GGCTTATGAGTATCGTGGGG+AGG | + | chr7.4:3446805-3446824 | MS.gene78590:CDS | 55.0% |
| ATGGTTGGGGTAGTCCGGTG+CGG | + | chr7.4:3445943-3445962 | MS.gene78590:CDS | 60.0% | |
| TCCGACCTCCATGCTCTCCT+CGG | + | chr7.4:3445420-3445439 | MS.gene78590:CDS | 60.0% | |
| ATGGAGGTCGGAGGCGGAAC+AGG | - | chr7.4:3445412-3445431 | None:intergenic | 65.0% | |
| TGGAGTTTGCGCTGCTGCCG+AGG | - | chr7.4:3445440-3445459 | None:intergenic | 65.0% | |
| ! | GAGAGCATGGAGGTCGGAGG+CGG | - | chr7.4:3445418-3445437 | None:intergenic | 65.0% |
| ! | GAGGAGAGCATGGAGGTCGG+AGG | - | chr7.4:3445421-3445440 | None:intergenic | 65.0% |
| ! | GCCGAGGAGAGCATGGAGGT+CGG | - | chr7.4:3445424-3445443 | None:intergenic | 65.0% |
| ! | TGCTGCCGAGGAGAGCATGG+AGG | - | chr7.4:3445428-3445447 | None:intergenic | 65.0% |
| CGCTGCTGCCGAGGAGAGCA+TGG | - | chr7.4:3445431-3445450 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 3445396 | 3446865 | 3445396 | ID=MS.gene78590 |
| chr7.4 | mRNA | 3445396 | 3446865 | 3445396 | ID=MS.gene78590.t1;Parent=MS.gene78590 |
| chr7.4 | exon | 3445396 | 3446865 | 3445396 | ID=MS.gene78590.t1.exon1;Parent=MS.gene78590.t1 |
| chr7.4 | CDS | 3445396 | 3446865 | 3445396 | ID=cds.MS.gene78590.t1;Parent=MS.gene78590.t1 |
| Gene Sequence |
| Protein sequence |
