Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79183.t1 | RHN45008.1 | 97.8 | 411 | 9 | 0 | 11 | 421 | 106 | 516 | 4.20E-238 | 833.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79183.t1 | Q6M9M7 | 35.0 | 389 | 186 | 7 | 33 | 421 | 52 | 373 | 1.2e-60 | 235.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79183.t1 | A0A072TX86 | 97.8 | 411 | 9 | 0 | 11 | 421 | 72 | 482 | 3.0e-238 | 833.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050099 | MS.gene79183 | 0.800238 | 1.58E-48 | -1.69E-46 |
MS.gene051171 | MS.gene79183 | 0.849626 | 2.87E-60 | -1.69E-46 |
MS.gene051240 | MS.gene79183 | 0.831989 | 1.22E-55 | -1.69E-46 |
MS.gene051242 | MS.gene79183 | 0.859833 | 3.15E-63 | -1.69E-46 |
MS.gene051244 | MS.gene79183 | 0.838683 | 2.49E-57 | -1.69E-46 |
MS.gene053971 | MS.gene79183 | 0.854503 | 1.18E-61 | -1.69E-46 |
MS.gene055428 | MS.gene79183 | 0.80504 | 1.62E-49 | -1.69E-46 |
MS.gene055971 | MS.gene79183 | 0.831641 | 1.49E-55 | -1.69E-46 |
MS.gene056664 | MS.gene79183 | 0.810894 | 9.18E-51 | -1.69E-46 |
MS.gene058233 | MS.gene79183 | 0.801167 | 1.02E-48 | -1.69E-46 |
MS.gene058276 | MS.gene79183 | 0.828648 | 8.00E-55 | -1.69E-46 |
MS.gene058746 | MS.gene79183 | 0.820834 | 5.56E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79183.t1 | MTR_7g029350 | 97.810 | 411 | 9 | 0 | 11 | 421 | 72 | 482 | 0.0 | 837 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene79183.t1 | AT3G27180 | 70.784 | 421 | 119 | 3 | 2 | 420 | 61 | 479 | 0.0 | 624 |
Find 95 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTTAATCTCAATGCATTTAA+TGG | 0.135696 | 7.2:-68766653 | None:intergenic |
GCTAATTTCTTTCGGAAATA+TGG | 0.169448 | 7.2:+68761423 | MS.gene79183:CDS |
CACATTTGATACTTGCAAAT+TGG | 0.215457 | 7.2:+68761458 | MS.gene79183:CDS |
GTCAAGTAAGGCATGGTATT+TGG | 0.226824 | 7.2:+68767483 | MS.gene79183:CDS |
ATCCACAGCTTATATAAATA+AGG | 0.227204 | 7.2:-68767336 | None:intergenic |
TCTTCAACCAACCCTCTTAT+TGG | 0.242462 | 7.2:+68762734 | MS.gene79183:CDS |
TTGGAGGTGTCGTGCGAAAT+TGG | 0.247015 | 7.2:+68762700 | MS.gene79183:CDS |
TTGATTGATTGCAGTTTCTA+TGG | 0.247836 | 7.2:+68765028 | MS.gene79183:intron |
TATGCTGGAGCTGGGGTCAT+TGG | 0.261380 | 7.2:+68766505 | MS.gene79183:CDS |
TCATTGGCCCCATCCAGTTT+TGG | 0.301498 | 7.2:+68765676 | MS.gene79183:CDS |
CTTCAACCAACCCTCTTATT+GGG | 0.312472 | 7.2:+68762735 | MS.gene79183:CDS |
TCTCTTCTTGGACTGAGTTT+AGG | 0.332861 | 7.2:-68767219 | None:intergenic |
GCTGATTTGTATGCTGGAGC+TGG | 0.336966 | 7.2:+68766496 | MS.gene79183:CDS |
GAGCCCACAAGCCACGAAAA+AGG | 0.357925 | 7.2:-68767001 | None:intergenic |
GTGCCTTCATCTTCAAGATA+TGG | 0.363925 | 7.2:-68764546 | None:intergenic |
TGTGTTTGCTTGGCCAAAAC+TGG | 0.366055 | 7.2:-68765689 | None:intergenic |
AAGATGCTGCTAATTTCTTT+CGG | 0.369678 | 7.2:+68761415 | MS.gene79183:CDS |
TCCACAGCAGCATTAATATT+AGG | 0.374930 | 7.2:-68764393 | None:intergenic |
CCCTCTTATTGGGCTTTATG+AGG | 0.376482 | 7.2:+68762745 | MS.gene79183:CDS |
ATGCTGGAGCTGGGGTCATT+GGG | 0.387886 | 7.2:+68766506 | MS.gene79183:CDS |
TCCACAGCTTATATAAATAA+GGG | 0.389954 | 7.2:-68767335 | None:intergenic |
AATAGATGGAGACATCTTCT+TGG | 0.392843 | 7.2:+68765613 | MS.gene79183:CDS |
ATATGTTTCAGGTAAGGTTC+AGG | 0.398072 | 7.2:+68764845 | MS.gene79183:intron |
AAAATGGTGGGCCACGGAGC+GGG | 0.402394 | 7.2:+68765052 | MS.gene79183:CDS |
AGGTTCAGGTTACATTGGTT+TGG | 0.403600 | 7.2:+68764859 | MS.gene79183:CDS |
TCTGTTGCTGATTTGTATGC+TGG | 0.412294 | 7.2:+68766490 | MS.gene79183:CDS |
CTGATTTGTATGCTGGAGCT+GGG | 0.419298 | 7.2:+68766497 | MS.gene79183:CDS |
CAAGTCATTGTTGTCAAGTA+AGG | 0.426435 | 7.2:+68767471 | MS.gene79183:CDS |
TGGCAATTTGCGATATGTTC+AGG | 0.432189 | 7.2:+68764569 | MS.gene79183:CDS |
ATTGAAGAATATATCATTAG+TGG | 0.434826 | 7.2:+68767081 | MS.gene79183:CDS |
TCCTCATAAAGCCCAATAAG+AGG | 0.440762 | 7.2:-68762746 | None:intergenic |
GGAAATTACCTTTGAGTACC+AGG | 0.442889 | 7.2:-68767532 | None:intergenic |
ATGCTGCTGTGGAGCTCCTT+AGG | 0.444837 | 7.2:+68764403 | MS.gene79183:CDS |
CTTTCGGAAATATGGTGTTA+CGG | 0.462687 | 7.2:+68761431 | MS.gene79183:CDS |
TTTATCAGTAGTCTGAAAGT+TGG | 0.477230 | 7.2:-68765100 | None:intergenic |
TCAGCAACAGATGACTCATA+TGG | 0.484331 | 7.2:-68766478 | None:intergenic |
AACTTCAAACCTTTGCACTC+TGG | 0.485980 | 7.2:-68762794 | None:intergenic |
CTTATTGGGCTTTATGAGGA+GGG | 0.491147 | 7.2:+68762749 | MS.gene79183:CDS |
CTTATATAAATAAGGGTTTG+TGG | 0.493147 | 7.2:-68767328 | None:intergenic |
CACAACACGTCTCTTCCCGC+TGG | 0.504538 | 7.2:+68764706 | MS.gene79183:CDS |
TTATTTATATAAGCTGTGGA+TGG | 0.505607 | 7.2:+68767338 | MS.gene79183:CDS |
CTCATATATCTTTCCCCAGC+GGG | 0.507701 | 7.2:-68764721 | None:intergenic |
GTCATCGATCCTCCAAGAAA+AGG | 0.510498 | 7.2:+68767034 | MS.gene79183:CDS |
TTTGCTTGGCCAAAACTGGA+TGG | 0.513184 | 7.2:-68765685 | None:intergenic |
ATGCTGCTGTCAACGGTGGC+AGG | 0.514082 | 7.2:-68766718 | None:intergenic |
TTCATTTAATTCATTCAGTG+TGG | 0.514198 | 7.2:+68765076 | MS.gene79183:CDS |
ACAACACGTCTCTTCCCGCT+GGG | 0.515537 | 7.2:+68764707 | MS.gene79183:CDS |
TGGTGGAATTGATGTCTCAT+TGG | 0.528317 | 7.2:+68765660 | MS.gene79183:CDS |
AAAATATAATACCTCGCCTA+AGG | 0.531862 | 7.2:-68764419 | None:intergenic |
TTGCTTGGCCAAAACTGGAT+GGG | 0.534469 | 7.2:-68765684 | None:intergenic |
TATTTATATAAGCTGTGGAT+GGG | 0.538388 | 7.2:+68767339 | MS.gene79183:CDS |
AGTGGAGTAACGTTTGCCTC+AGG | 0.540052 | 7.2:-68767301 | None:intergenic |
ACCCTTATTTATATAAGCTG+TGG | 0.543550 | 7.2:+68767334 | MS.gene79183:CDS |
ATTCAGTTTGTCTGAACCAT+GGG | 0.544352 | 7.2:-68764901 | None:intergenic |
TCATTTAATTCATTCAGTGT+GGG | 0.548044 | 7.2:+68765077 | MS.gene79183:CDS |
TGAGGCAAACGTTACTCCAC+TGG | 0.548866 | 7.2:+68767303 | MS.gene79183:CDS |
ATTTCTTTCCTGGTACTCAA+AGG | 0.552260 | 7.2:+68767524 | MS.gene79183:CDS |
TGCTTGGCCAAAACTGGATG+GGG | 0.553152 | 7.2:-68765683 | None:intergenic |
TCCTAATATTAATGCTGCTG+TGG | 0.557970 | 7.2:+68764392 | MS.gene79183:CDS |
TCTTATTGGGCTTTATGAGG+AGG | 0.558830 | 7.2:+68762748 | MS.gene79183:CDS |
GAACCATATCTTGAAGATGA+AGG | 0.572934 | 7.2:+68764543 | MS.gene79183:CDS |
TCAAGAAATGAAAATTCCCA+TGG | 0.576230 | 7.2:+68764885 | MS.gene79183:CDS |
CATTCAGTTTGTCTGAACCA+TGG | 0.577148 | 7.2:-68764902 | None:intergenic |
AGGTAAGGTTCAGGTTACAT+TGG | 0.580408 | 7.2:+68764854 | MS.gene79183:intron |
CCAAGTGATGCTGCTGTCAA+CGG | 0.585587 | 7.2:-68766725 | None:intergenic |
TTTCTGTAACTTCTGTAGCA+AGG | 0.586403 | 7.2:-68766449 | None:intergenic |
GCATTCATCATTCATGAAGG+TGG | 0.589357 | 7.2:+68759035 | MS.gene79183:CDS |
CCGTTGACAGCAGCATCACT+TGG | 0.590200 | 7.2:+68766725 | MS.gene79183:CDS |
TAGCCGCGACAAGAAAGTGC+AGG | 0.591239 | 7.2:+68766536 | MS.gene79183:CDS |
ACGTGCTAATGAAACTTCAG+TGG | 0.591655 | 7.2:+68767258 | MS.gene79183:CDS |
AAAGCATTCATCATTCATGA+AGG | 0.593422 | 7.2:+68759032 | MS.gene79183:CDS |
ATAAGGGTTTGTGGCACCAG+TGG | 0.597852 | 7.2:-68767319 | None:intergenic |
TATCTTGAAGATGAAGGCAC+TGG | 0.598356 | 7.2:+68764549 | MS.gene79183:CDS |
TGAGATTAACAAAGAGTCGA+AGG | 0.598999 | 7.2:+68766666 | MS.gene79183:CDS |
CCTCATAAAGCCCAATAAGA+GGG | 0.603521 | 7.2:-68762745 | None:intergenic |
ATAAAGCCCAATAAGAGGGT+TGG | 0.605257 | 7.2:-68762741 | None:intergenic |
TTCATCATTCATGAAGGTGG+AGG | 0.605695 | 7.2:+68759038 | MS.gene79183:CDS |
CGTGCGAAATTGGCCGTGCG+TGG | 0.607380 | 7.2:+68762710 | MS.gene79183:CDS |
TTCAGACAAACTGAATGCAC+TGG | 0.613114 | 7.2:+68764908 | MS.gene79183:CDS |
CATTGTTGTCAAGTAAGGCA+TGG | 0.620509 | 7.2:+68767476 | MS.gene79183:CDS |
TCATTAGCACGTAAAACCCA+TGG | 0.622253 | 7.2:-68767247 | None:intergenic |
ATCGACATTCCAGAGTGCAA+AGG | 0.626643 | 7.2:+68762785 | MS.gene79183:CDS |
AAGCTTTGTCATCATCAGAA+CGG | 0.632652 | 7.2:+68767110 | MS.gene79183:CDS |
TGATTTGTATGCTGGAGCTG+GGG | 0.634386 | 7.2:+68766498 | MS.gene79183:CDS |
TTGCCTGCACTTTCTTGTCG+CGG | 0.637545 | 7.2:-68766539 | None:intergenic |
CCAAGAAGAGAAAAGACCAT+GGG | 0.639192 | 7.2:+68767231 | MS.gene79183:CDS |
GTTGGTTGAAGAACCACGCA+CGG | 0.652747 | 7.2:-68762723 | None:intergenic |
TAAAGCTTTGTCATCACCTG+AGG | 0.669165 | 7.2:+68767285 | MS.gene79183:CDS |
TCCAAGAAGAGAAAAGACCA+TGG | 0.673351 | 7.2:+68767230 | MS.gene79183:CDS |
CAACACGTCTCTTCCCGCTG+GGG | 0.677453 | 7.2:+68764708 | MS.gene79183:CDS |
AGTGATGCTGCTGTCAACGG+TGG | 0.678929 | 7.2:-68766722 | None:intergenic |
GCTGTGGAGCTCCTTAGGCG+AGG | 0.686020 | 7.2:+68764408 | MS.gene79183:CDS |
ATTAAATGAAGCCCGCTCCG+TGG | 0.688253 | 7.2:-68765063 | None:intergenic |
GCTGGGGAAAGATATATGAG+TGG | 0.725333 | 7.2:+68764724 | MS.gene79183:CDS |
ACTCATATATCTTTCCCCAG+CGG | 0.754269 | 7.2:-68764722 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 68759029 | 68767549 | 68759029 | ID=MS.gene79183 |
chr7.2 | mRNA | 68759029 | 68767549 | 68759029 | ID=MS.gene79183.t1;Parent=MS.gene79183 |
chr7.2 | exon | 68759029 | 68759059 | 68759029 | ID=MS.gene79183.t1.exon1;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68759029 | 68759059 | 68759029 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68761412 | 68761479 | 68761412 | ID=MS.gene79183.t1.exon2;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68761412 | 68761479 | 68761412 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68762695 | 68762806 | 68762695 | ID=MS.gene79183.t1.exon3;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68762695 | 68762806 | 68762695 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68764385 | 68764429 | 68764385 | ID=MS.gene79183.t1.exon4;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68764385 | 68764429 | 68764385 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68764523 | 68764590 | 68764523 | ID=MS.gene79183.t1.exon5;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68764523 | 68764590 | 68764523 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68764691 | 68764745 | 68764691 | ID=MS.gene79183.t1.exon6;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68764691 | 68764745 | 68764691 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68764856 | 68764935 | 68764856 | ID=MS.gene79183.t1.exon7;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68764856 | 68764935 | 68764856 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68765042 | 68765125 | 68765042 | ID=MS.gene79183.t1.exon8;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68765042 | 68765125 | 68765042 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68765601 | 68765714 | 68765601 | ID=MS.gene79183.t1.exon9;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68765601 | 68765714 | 68765601 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68766439 | 68766557 | 68766439 | ID=MS.gene79183.t1.exon10;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68766439 | 68766557 | 68766439 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68766651 | 68766768 | 68766651 | ID=MS.gene79183.t1.exon11;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68766651 | 68766768 | 68766651 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68766998 | 68767131 | 68766998 | ID=MS.gene79183.t1.exon12;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68766998 | 68767131 | 68766998 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68767219 | 68767375 | 68767219 | ID=MS.gene79183.t1.exon13;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68767219 | 68767375 | 68767219 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
chr7.2 | exon | 68767466 | 68767549 | 68767466 | ID=MS.gene79183.t1.exon14;Parent=MS.gene79183.t1 |
chr7.2 | CDS | 68767466 | 68767549 | 68767466 | ID=cds.MS.gene79183.t1;Parent=MS.gene79183.t1 |
Gene Sequence |
Protein sequence |