Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79407.t1 | XP_003598997.1 | 93 | 556 | 39 | 0 | 1 | 556 | 65 | 620 | 1.10E-294 | 1021.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79407.t1 | Q9FNR3 | 44.7 | 564 | 297 | 5 | 2 | 555 | 81 | 639 | 1.9e-122 | 441.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79407.t1 | G7IZB2 | 93.0 | 556 | 39 | 0 | 1 | 556 | 65 | 620 | 7.9e-295 | 1021.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene79407 | MS.gene44621 | PPI |
| MS.gene91620 | MS.gene79407 | PPI |
| MS.gene069415 | MS.gene79407 | PPI |
| MS.gene021896 | MS.gene79407 | PPI |
| MS.gene79407 | MS.gene021898 | PPI |
| MS.gene79407 | MS.gene069412 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79407.t1 | MTR_3g025900 | 92.986 | 556 | 39 | 0 | 1 | 556 | 65 | 620 | 0.0 | 1045 |
| MS.gene79407.t1 | MTR_7g013770 | 44.821 | 560 | 292 | 5 | 12 | 555 | 119 | 677 | 1.17e-167 | 491 |
| MS.gene79407.t1 | MTR_4g103540 | 37.809 | 566 | 321 | 10 | 15 | 555 | 132 | 691 | 9.82e-121 | 372 |
| MS.gene79407.t1 | MTR_8g021330 | 34.615 | 572 | 332 | 10 | 15 | 550 | 46 | 611 | 5.86e-103 | 323 |
| MS.gene79407.t1 | MTR_5g073450 | 31.091 | 550 | 359 | 9 | 12 | 548 | 95 | 637 | 1.54e-91 | 294 |
| MS.gene79407.t1 | MTR_1g090620 | 31.010 | 574 | 348 | 10 | 3 | 548 | 92 | 645 | 1.08e-87 | 284 |
| MS.gene79407.t1 | MTR_7g026630 | 32.112 | 573 | 347 | 13 | 3 | 556 | 110 | 659 | 3.97e-86 | 280 |
| MS.gene79407.t1 | MTR_1g057560 | 30.576 | 556 | 347 | 9 | 3 | 542 | 91 | 623 | 1.13e-82 | 270 |
| MS.gene79407.t1 | MTR_3g031130 | 31.284 | 553 | 353 | 9 | 10 | 548 | 84 | 623 | 4.70e-82 | 269 |
| MS.gene79407.t1 | MTR_6g033310 | 30.710 | 521 | 331 | 7 | 41 | 545 | 220 | 726 | 1.05e-77 | 260 |
| MS.gene79407.t1 | MTR_5g073460 | 31.544 | 447 | 295 | 5 | 111 | 548 | 252 | 696 | 4.97e-71 | 241 |
| MS.gene79407.t1 | MTR_2g096230 | 32.118 | 439 | 283 | 6 | 113 | 545 | 153 | 582 | 2.51e-66 | 226 |
| MS.gene79407.t1 | MTR_4g062330 | 29.015 | 548 | 356 | 11 | 12 | 543 | 73 | 603 | 1.39e-61 | 214 |
| MS.gene79407.t1 | MTR_1g117090 | 28.801 | 559 | 340 | 9 | 41 | 549 | 123 | 673 | 2.28e-60 | 212 |
| MS.gene79407.t1 | MTR_1g067460 | 27.043 | 514 | 344 | 9 | 45 | 542 | 101 | 599 | 1.73e-58 | 205 |
| MS.gene79407.t1 | MTR_1g067480 | 27.168 | 519 | 344 | 13 | 45 | 546 | 103 | 604 | 2.03e-57 | 202 |
| MS.gene79407.t1 | MTR_5g073620 | 27.740 | 447 | 284 | 8 | 102 | 538 | 272 | 689 | 1.82e-46 | 175 |
| MS.gene79407.t1 | MTR_5g073620 | 29.143 | 175 | 117 | 3 | 380 | 548 | 899 | 1072 | 3.56e-13 | 73.2 |
| MS.gene79407.t1 | MTR_5g074130 | 25.785 | 446 | 304 | 9 | 117 | 550 | 251 | 681 | 3.27e-35 | 141 |
| MS.gene79407.t1 | MTR_5g073480 | 24.130 | 460 | 276 | 7 | 79 | 533 | 229 | 620 | 1.47e-33 | 135 |
| MS.gene79407.t1 | MTR_1g009620 | 25.000 | 472 | 322 | 9 | 97 | 547 | 202 | 662 | 7.14e-32 | 130 |
| MS.gene79407.t1 | MTR_3g464010 | 25.450 | 444 | 286 | 12 | 118 | 542 | 249 | 666 | 1.93e-29 | 123 |
| MS.gene79407.t1 | MTR_1g017910 | 26.139 | 417 | 279 | 11 | 125 | 516 | 248 | 660 | 4.41e-28 | 119 |
| MS.gene79407.t1 | MTR_4g008260 | 26.577 | 444 | 297 | 11 | 118 | 547 | 216 | 644 | 6.04e-27 | 115 |
| MS.gene79407.t1 | MTR_5g073920 | 23.779 | 471 | 317 | 14 | 93 | 548 | 220 | 663 | 7.18e-23 | 103 |
| MS.gene79407.t1 | MTR_5g093530 | 25.836 | 329 | 210 | 8 | 191 | 517 | 246 | 542 | 1.01e-22 | 102 |
| MS.gene79407.t1 | MTR_5g073770 | 31.148 | 183 | 124 | 1 | 102 | 282 | 185 | 367 | 1.15e-22 | 100 |
| MS.gene79407.t1 | MTR_0229s0040 | 32.461 | 191 | 106 | 5 | 376 | 547 | 31 | 217 | 4.86e-19 | 87.0 |
| MS.gene79407.t1 | MTR_5g073780 | 29.310 | 174 | 116 | 3 | 380 | 547 | 54 | 226 | 1.79e-15 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79407.t1 | AT5G61010 | 44.681 | 564 | 297 | 5 | 2 | 555 | 81 | 639 | 1.26e-157 | 464 |
| MS.gene79407.t1 | AT5G61010 | 44.681 | 564 | 297 | 5 | 2 | 555 | 81 | 639 | 1.26e-157 | 464 |
| MS.gene79407.t1 | AT3G29400 | 39.825 | 570 | 306 | 9 | 15 | 555 | 97 | 658 | 2.61e-134 | 405 |
| MS.gene79407.t1 | AT5G50380 | 38.889 | 576 | 304 | 12 | 12 | 555 | 123 | 682 | 1.99e-129 | 394 |
| MS.gene79407.t1 | AT3G14090 | 35.382 | 537 | 314 | 7 | 44 | 550 | 86 | 619 | 8.24e-105 | 328 |
| MS.gene79407.t1 | AT1G54090 | 33.390 | 584 | 326 | 8 | 15 | 550 | 49 | 617 | 4.89e-99 | 313 |
| MS.gene79407.t1 | AT1G72470 | 33.962 | 583 | 327 | 10 | 15 | 550 | 56 | 627 | 1.11e-95 | 305 |
| MS.gene79407.t1 | AT5G03540 | 32.653 | 539 | 311 | 8 | 29 | 544 | 6 | 515 | 1.36e-90 | 288 |
| MS.gene79407.t1 | AT5G03540 | 31.874 | 571 | 329 | 10 | 3 | 544 | 91 | 630 | 9.37e-90 | 289 |
| MS.gene79407.t1 | AT5G03540 | 31.346 | 587 | 337 | 11 | 3 | 544 | 91 | 656 | 1.66e-86 | 281 |
| MS.gene79407.t1 | AT5G52340 | 30.728 | 563 | 339 | 12 | 3 | 544 | 91 | 623 | 3.76e-82 | 269 |
| MS.gene79407.t1 | AT5G58430 | 30.839 | 548 | 348 | 9 | 12 | 545 | 89 | 619 | 1.16e-81 | 268 |
| MS.gene79407.t1 | AT1G07000 | 31.694 | 549 | 325 | 13 | 10 | 545 | 86 | 597 | 9.96e-79 | 259 |
| MS.gene79407.t1 | AT5G13990 | 31.729 | 561 | 351 | 12 | 13 | 556 | 148 | 693 | 5.55e-73 | 246 |
| MS.gene79407.t1 | AT5G13150 | 31.070 | 486 | 303 | 8 | 87 | 549 | 173 | 649 | 8.71e-71 | 239 |
| MS.gene79407.t1 | AT1G07725 | 29.755 | 531 | 334 | 11 | 42 | 556 | 96 | 603 | 2.69e-69 | 234 |
| MS.gene79407.t1 | AT3G09520 | 28.415 | 549 | 358 | 10 | 14 | 543 | 73 | 605 | 3.01e-68 | 232 |
| MS.gene79407.t1 | AT2G28640 | 29.945 | 541 | 343 | 11 | 17 | 548 | 69 | 582 | 6.01e-68 | 231 |
| MS.gene79407.t1 | AT5G59730 | 29.928 | 558 | 350 | 12 | 12 | 546 | 61 | 600 | 2.34e-66 | 227 |
| MS.gene79407.t1 | AT5G59730 | 29.928 | 558 | 350 | 12 | 12 | 546 | 61 | 600 | 2.73e-66 | 227 |
| MS.gene79407.t1 | AT2G39380 | 27.961 | 515 | 347 | 7 | 45 | 545 | 107 | 611 | 9.55e-65 | 223 |
| MS.gene79407.t1 | AT5G52350 | 28.974 | 497 | 318 | 9 | 62 | 544 | 102 | 577 | 1.26e-61 | 213 |
| MS.gene79407.t1 | AT3G55150 | 27.728 | 559 | 367 | 10 | 6 | 545 | 71 | 611 | 1.68e-59 | 209 |
| MS.gene79407.t1 | AT3G09530 | 26.364 | 550 | 365 | 11 | 17 | 544 | 71 | 602 | 2.77e-53 | 192 |
| MS.gene79407.t1 | AT2G28650 | 29.327 | 416 | 280 | 5 | 128 | 542 | 152 | 554 | 1.06e-50 | 183 |
| MS.gene79407.t1 | AT4G31540 | 25.114 | 438 | 296 | 9 | 123 | 542 | 231 | 654 | 9.86e-33 | 133 |
| MS.gene79407.t1 | AT1G51640 | 24.945 | 453 | 294 | 14 | 125 | 548 | 196 | 631 | 9.84e-23 | 102 |
Find 77 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATTTATTTGGAGATTTC+TGG | 0.101249 | 3.1:-16771911 | MS.gene79407:CDS |
| ACTTGATATGTATGAGGTTT+TGG | 0.242450 | 3.1:-16772408 | MS.gene79407:CDS |
| CATCGACAATTAGAAGATTA+AGG | 0.252964 | 3.1:+16772150 | None:intergenic |
| CATCGAAAATGTGCTTAAAA+TGG | 0.261889 | 3.1:-16772660 | MS.gene79407:CDS |
| ATCAAGGCACTTGTTGAATA+TGG | 0.262018 | 3.1:-16772179 | MS.gene79407:CDS |
| TCTTCGCGAAGTTCTTTATC+AGG | 0.287927 | 3.1:+16771696 | None:intergenic |
| TGGCCTCACCAAAATTTAAA+AGG | 0.300130 | 3.1:+16772471 | None:intergenic |
| CCAGGAAAACATTTATTTGA+TGG | 0.305526 | 3.1:+16772242 | None:intergenic |
| CACAAACTTCTAAGAAGCTT+TGG | 0.327792 | 3.1:-16772317 | MS.gene79407:CDS |
| TGAAGATAAGGTAATGAGTT+TGG | 0.328772 | 3.1:-16773179 | None:intergenic |
| AACTGAACCTCGAGATATTT+CGG | 0.338257 | 3.1:+16772499 | None:intergenic |
| GTTCAATTGCTTGCAACTTA+AGG | 0.341266 | 3.1:-16772067 | MS.gene79407:CDS |
| AGTTGTTATGTCAAGGCTTA+AGG | 0.343431 | 3.1:-16773017 | MS.gene79407:CDS |
| GAAGTATACAAAACACAAAC+AGG | 0.347813 | 3.1:-16771729 | MS.gene79407:CDS |
| CCCAAATCCATTTCTTTATC+CGG | 0.349318 | 3.1:+16772618 | None:intergenic |
| CAAAAGTTTGATTCTGTGAA+TGG | 0.352739 | 3.1:-16773088 | MS.gene79407:CDS |
| ATACACAATATCAACTCTAT+TGG | 0.354741 | 3.1:+16772928 | None:intergenic |
| TTGAGATCTTCAAGTATAGA+AGG | 0.357814 | 3.1:+16772803 | None:intergenic |
| GCCGGATAAAGAAATGGATT+TGG | 0.358377 | 3.1:-16772619 | MS.gene79407:CDS |
| GGCGAGCAGTACTATTGATT+TGG | 0.376403 | 3.1:-16772831 | MS.gene79407:CDS |
| TCGCGAAGATCTACAAATAT+CGG | 0.379075 | 3.1:-16771682 | MS.gene79407:CDS |
| GCCATATCTTCATTGCTTCA+AGG | 0.392057 | 3.1:-16772733 | MS.gene79407:CDS |
| ATTGTGTATGATGGATCATT+TGG | 0.401464 | 3.1:-16772914 | MS.gene79407:CDS |
| CATTCATTACATGGTTCAAA+AGG | 0.407674 | 3.1:-16771955 | MS.gene79407:CDS |
| TCCTTGAAGCAATGAAGATA+TGG | 0.418681 | 3.1:+16772732 | None:intergenic |
| CCGGATAAAGAAATGGATTT+GGG | 0.420824 | 3.1:-16772618 | MS.gene79407:CDS |
| CTTGGATTTGTTGCACAAGT+TGG | 0.424158 | 3.1:+16772022 | None:intergenic |
| TGCTTCAAGGAGAGAAGCCT+TGG | 0.450661 | 3.1:-16772720 | MS.gene79407:CDS |
| AAGCAGATTCTCGGAGACTT+TGG | 0.454981 | 3.1:-16772545 | MS.gene79407:CDS |
| TTGTTTACTTGATATGTATG+AGG | 0.463834 | 3.1:-16772414 | MS.gene79407:CDS |
| CAATTGTGTAAGCAGATTCT+CGG | 0.463987 | 3.1:-16772554 | MS.gene79407:CDS |
| TGAGAAGTGGATCAAGTATA+CGG | 0.464642 | 3.1:-16771598 | MS.gene79407:CDS |
| GGAGAAACAAAACTGATAAA+CGG | 0.464846 | 3.1:+16772520 | None:intergenic |
| GAATTGAAAGACATGTAATC+AGG | 0.471319 | 3.1:+16772950 | None:intergenic |
| TTTGGTGAGGCCATAACAAT+GGG | 0.474376 | 3.1:-16772461 | MS.gene79407:CDS |
| GTCAAGGCTTAAGGATGAGT+TGG | 0.479252 | 3.1:-16773008 | MS.gene79407:CDS |
| GAAATGGATTTGGGCGATGA+AGG | 0.482082 | 3.1:-16772609 | MS.gene79407:CDS |
| GTTTGCTTCAAATTACCATC+AGG | 0.485110 | 3.1:-16772762 | MS.gene79407:CDS |
| TGAATCGCCGGATAAAGAAA+TGG | 0.490537 | 3.1:-16772625 | MS.gene79407:CDS |
| CCGGTATAACTTCGGTAAGC+AGG | 0.491544 | 3.1:+16771642 | None:intergenic |
| AGCAACATCAGTGTATAACT+TGG | 0.499600 | 3.1:+16772004 | None:intergenic |
| TGTGTGCGTTCCCATTGTTA+TGG | 0.501998 | 3.1:+16772451 | None:intergenic |
| GAATGGAAATTTGAAGCATA+AGG | 0.507338 | 3.1:-16773071 | MS.gene79407:CDS |
| CCTGCTTACCGAAGTTATAC+CGG | 0.507813 | 3.1:-16771642 | MS.gene79407:CDS |
| CGTCTAACATTGATGAGAAG+TGG | 0.516919 | 3.1:-16771611 | MS.gene79407:CDS |
| AGAGTTGATATTGTGTATGA+TGG | 0.520793 | 3.1:-16772923 | MS.gene79407:CDS |
| TTCTGGCTTCGCCGACATGT+TGG | 0.524938 | 3.1:-16771894 | MS.gene79407:CDS |
| GATGAATAACATTCATTACA+TGG | 0.527155 | 3.1:-16771964 | MS.gene79407:CDS |
| GAGGAAAGTTTATCGAATTG+TGG | 0.528033 | 3.1:-16771804 | MS.gene79407:CDS |
| AAAATATCAACGAGGTTTCG+AGG | 0.528128 | 3.1:-16772877 | MS.gene79407:CDS |
| AGTGGCACTGCTTGAATCGC+CGG | 0.529546 | 3.1:-16772637 | MS.gene79407:CDS |
| TCATGACATATCTTGTAAGA+TGG | 0.530309 | 3.1:+16772207 | None:intergenic |
| TGGATCATTTGGTTCAATTG+AGG | 0.538106 | 3.1:-16772903 | MS.gene79407:CDS |
| TAGTACTGCTCGCCTCGGAT+TGG | 0.539033 | 3.1:+16772840 | None:intergenic |
| TTTGTATACTTCACCAAAAG+CGG | 0.555253 | 3.1:+16771740 | None:intergenic |
| AATCTCCAAATAAATTGCAT+AGG | 0.555389 | 3.1:+16771916 | None:intergenic |
| GAAGCTATGAGAAGGTGACT+TGG | 0.564885 | 3.1:-16771851 | MS.gene79407:CDS |
| AATGTTAGACGAGTTTCTAC+CGG | 0.566162 | 3.1:+16771623 | None:intergenic |
| ATCAATAGTACTGCTCGCCT+CGG | 0.580823 | 3.1:+16772835 | None:intergenic |
| AGATATGGCAAAACTCCTGA+TGG | 0.585596 | 3.1:+16772747 | None:intergenic |
| TGTACTTTCTGTGTTTAGTG+AGG | 0.604788 | 3.1:-16771823 | MS.gene79407:CDS |
| AGATGGTGAACACCTCCACC+AGG | 0.608901 | 3.1:+16772224 | None:intergenic |
| TGAAACTTCGACTGATCTTG+CGG | 0.612837 | 3.1:-16772129 | MS.gene79407:CDS |
| AGTTTCTACCGGTATAACTT+CGG | 0.613307 | 3.1:+16771634 | None:intergenic |
| TGTTTCTCCGAAATATCTCG+AGG | 0.618316 | 3.1:-16772506 | MS.gene79407:CDS |
| AAAATGTGCTTAAAATGGAG+TGG | 0.627109 | 3.1:-16772655 | MS.gene79407:CDS |
| GCACAAGTTGGATTCTAGAG+TGG | 0.627118 | 3.1:+16772034 | None:intergenic |
| TTATGCTAGAAGCTATGAGA+AGG | 0.634466 | 3.1:-16771859 | MS.gene79407:CDS |
| ATATGTCATGAATTACATCA+AGG | 0.636314 | 3.1:-16772195 | MS.gene79407:CDS |
| AATGACAAAGTACTCAGCCA+AGG | 0.644750 | 3.1:+16772703 | None:intergenic |
| GCTGAAACATGCCAACATGT+CGG | 0.661748 | 3.1:+16771883 | None:intergenic |
| TAGTGACGGTATCCAATCCG+AGG | 0.672922 | 3.1:-16772852 | MS.gene79407:CDS |
| GAGGTTTCGAGGAGTAGTGA+CGG | 0.702293 | 3.1:-16772866 | MS.gene79407:CDS |
| TATACAAAACACAAACAGGG+TGG | 0.717618 | 3.1:-16771725 | MS.gene79407:CDS |
| GAAGTGGATCAAGTATACGG+TGG | 0.719346 | 3.1:-16771595 | MS.gene79407:CDS |
| AAGTATACAAAACACAAACA+GGG | 0.726191 | 3.1:-16771728 | MS.gene79407:CDS |
| TGAGGATGAAAATATCAACG+AGG | 0.787428 | 3.1:-16772885 | MS.gene79407:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATTTTAGATCTTTTTCA+TGG | - | chr3.1:16773126-16773145 | MS.gene79407:CDS | 15.0% |
| !! | AAAAACCTATGCAATTTATT+TGG | - | chr3.1:16772763-16772782 | MS.gene79407:CDS | 20.0% |
| ! | AAGTATACAAAACACAAACA+GGG | - | chr3.1:16772956-16772975 | MS.gene79407:CDS | 25.0% |
| ! | AATCTCCAAATAAATTGCAT+AGG | + | chr3.1:16772771-16772790 | None:intergenic | 25.0% |
| ! | ATACACAATATCAACTCTAT+TGG | + | chr3.1:16771759-16771778 | None:intergenic | 25.0% |
| ! | ATATGTCATGAATTACATCA+AGG | - | chr3.1:16772489-16772508 | MS.gene79407:CDS | 25.0% |
| ! | GATGAATAACATTCATTACA+TGG | - | chr3.1:16772720-16772739 | MS.gene79407:CDS | 25.0% |
| ! | TTGTTTACTTGATATGTATG+AGG | - | chr3.1:16772270-16772289 | MS.gene79407:CDS | 25.0% |
| !! | AGTAAACAAAACAGTTTTTC+TGG | + | chr3.1:16772259-16772278 | None:intergenic | 25.0% |
| AAAATGTGCTTAAAATGGAG+TGG | - | chr3.1:16772029-16772048 | MS.gene79407:CDS | 30.0% | |
| CAAAAGTTTGATTCTGTGAA+TGG | - | chr3.1:16771596-16771615 | MS.gene79407:CDS | 30.0% | |
| CATCGAAAATGTGCTTAAAA+TGG | - | chr3.1:16772024-16772043 | MS.gene79407:CDS | 30.0% | |
| CATCGACAATTAGAAGATTA+AGG | + | chr3.1:16772537-16772556 | None:intergenic | 30.0% | |
| CATTCATTACATGGTTCAAA+AGG | - | chr3.1:16772729-16772748 | MS.gene79407:CDS | 30.0% | |
| CCAGGAAAACATTTATTTGA+TGG | + | chr3.1:16772445-16772464 | None:intergenic | 30.0% | |
| GAAGTATACAAAACACAAAC+AGG | - | chr3.1:16772955-16772974 | MS.gene79407:CDS | 30.0% | |
| GAATTGAAAGACATGTAATC+AGG | + | chr3.1:16771737-16771756 | None:intergenic | 30.0% | |
| GCAATTTATTTGGAGATTTC+TGG | - | chr3.1:16772773-16772792 | MS.gene79407:CDS | 30.0% | |
| GGAGAAACAAAACTGATAAA+CGG | + | chr3.1:16772167-16772186 | None:intergenic | 30.0% | |
| TCATGACATATCTTGTAAGA+TGG | + | chr3.1:16772480-16772499 | None:intergenic | 30.0% | |
| TTGAGATCTTCAAGTATAGA+AGG | + | chr3.1:16771884-16771903 | None:intergenic | 30.0% | |
| TTTGTATACTTCACCAAAAG+CGG | + | chr3.1:16772947-16772966 | None:intergenic | 30.0% | |
| ! | ACTTGATATGTATGAGGTTT+TGG | - | chr3.1:16772276-16772295 | MS.gene79407:CDS | 30.0% |
| ! | CAAACTTTTGTTGCAAAGTT+TGG | + | chr3.1:16771586-16771605 | None:intergenic | 30.0% |
| ! | CCATCAAATAAATGTTTTCC+TGG | - | chr3.1:16772442-16772461 | MS.gene79407:CDS | 30.0% |
| ! | GAATGGAAATTTGAAGCATA+AGG | - | chr3.1:16771613-16771632 | MS.gene79407:CDS | 30.0% |
| ! | GTTTTGCGCCTTTTAAATTT+TGG | - | chr3.1:16772205-16772224 | MS.gene79407:CDS | 30.0% |
| ! | TCAAATAAATGTTTTCCTGG+TGG | - | chr3.1:16772445-16772464 | MS.gene79407:CDS | 30.0% |
| ! | TTTTGCAAGTTGTTATGTCA+AGG | - | chr3.1:16771660-16771679 | MS.gene79407:CDS | 30.0% |
| !! | AAAGATTTTAGTACCGCTTT+TGG | - | chr3.1:16772931-16772950 | MS.gene79407:CDS | 30.0% |
| !! | AGAGTTGATATTGTGTATGA+TGG | - | chr3.1:16771761-16771780 | MS.gene79407:CDS | 30.0% |
| !! | ATTGTGTATGATGGATCATT+TGG | - | chr3.1:16771770-16771789 | MS.gene79407:CDS | 30.0% |
| AAAATATCAACGAGGTTTCG+AGG | - | chr3.1:16771807-16771826 | MS.gene79407:CDS | 35.0% | |
| AACTGAACCTCGAGATATTT+CGG | + | chr3.1:16772188-16772207 | None:intergenic | 35.0% | |
| AATGTTAGACGAGTTTCTAC+CGG | + | chr3.1:16773064-16773083 | None:intergenic | 35.0% | |
| AGCAACATCAGTGTATAACT+TGG | + | chr3.1:16772683-16772702 | None:intergenic | 35.0% | |
| AGTTGTTATGTCAAGGCTTA+AGG | - | chr3.1:16771667-16771686 | MS.gene79407:CDS | 35.0% | |
| AGTTTCTACCGGTATAACTT+CGG | + | chr3.1:16773053-16773072 | None:intergenic | 35.0% | |
| CAATTGTGTAAGCAGATTCT+CGG | - | chr3.1:16772130-16772149 | MS.gene79407:CDS | 35.0% | |
| CCCAAATCCATTTCTTTATC+CGG | + | chr3.1:16772069-16772088 | None:intergenic | 35.0% | |
| GAGGAAAGTTTATCGAATTG+TGG | - | chr3.1:16772880-16772899 | MS.gene79407:CDS | 35.0% | |
| GTTCAATTGCTTGCAACTTA+AGG | - | chr3.1:16772617-16772636 | MS.gene79407:CDS | 35.0% | |
| GTTTGCTTCAAATTACCATC+AGG | - | chr3.1:16771922-16771941 | MS.gene79407:CDS | 35.0% | |
| TATACAAAACACAAACAGGG+TGG | - | chr3.1:16772959-16772978 | MS.gene79407:CDS | 35.0% | |
| TCCTTGAAGCAATGAAGATA+TGG | + | chr3.1:16771955-16771974 | None:intergenic | 35.0% | |
| TCGCGAAGATCTACAAATAT+CGG | - | chr3.1:16773002-16773021 | MS.gene79407:CDS | 35.0% | |
| TGAGAAGTGGATCAAGTATA+CGG | - | chr3.1:16773086-16773105 | MS.gene79407:CDS | 35.0% | |
| TGAGGATGAAAATATCAACG+AGG | - | chr3.1:16771799-16771818 | MS.gene79407:CDS | 35.0% | |
| TGGCCTCACCAAAATTTAAA+AGG | + | chr3.1:16772216-16772235 | None:intergenic | 35.0% | |
| TGTACTTTCTGTGTTTAGTG+AGG | - | chr3.1:16772861-16772880 | MS.gene79407:CDS | 35.0% | |
| TTATGCTAGAAGCTATGAGA+AGG | - | chr3.1:16772825-16772844 | MS.gene79407:CDS | 35.0% | |
| ! | AATAAATGTTTTCCTGGTGG+AGG | - | chr3.1:16772448-16772467 | MS.gene79407:CDS | 35.0% |
| ! | ATCAAGGCACTTGTTGAATA+TGG | - | chr3.1:16772505-16772524 | MS.gene79407:CDS | 35.0% |
| ! | CACAAACTTCTAAGAAGCTT+TGG | - | chr3.1:16772367-16772386 | MS.gene79407:CDS | 35.0% |
| ! | CCGGATAAAGAAATGGATTT+GGG | - | chr3.1:16772066-16772085 | MS.gene79407:CDS | 35.0% |
| ! | TGGATCATTTGGTTCAATTG+AGG | - | chr3.1:16771781-16771800 | MS.gene79407:CDS | 35.0% |
| !! | GAAGTTGATTCTTTTGTCAG+AGG | - | chr3.1:16772337-16772356 | MS.gene79407:CDS | 35.0% |
| AGATATGGCAAAACTCCTGA+TGG | + | chr3.1:16771940-16771959 | None:intergenic | 40.0% | |
| CGTCTAACATTGATGAGAAG+TGG | - | chr3.1:16773073-16773092 | MS.gene79407:CDS | 40.0% | |
| GCCATATCTTCATTGCTTCA+AGG | - | chr3.1:16771951-16771970 | MS.gene79407:CDS | 40.0% | |
| TCTTCGCGAAGTTCTTTATC+AGG | + | chr3.1:16772991-16773010 | None:intergenic | 40.0% | |
| TGAAACTTCGACTGATCTTG+CGG | - | chr3.1:16772555-16772574 | MS.gene79407:CDS | 40.0% | |
| TGAATCGCCGGATAAAGAAA+TGG | - | chr3.1:16772059-16772078 | MS.gene79407:CDS | 40.0% | |
| TGTTTCTCCGAAATATCTCG+AGG | - | chr3.1:16772178-16772197 | MS.gene79407:CDS | 40.0% | |
| TTTGGTGAGGCCATAACAAT+GGG | - | chr3.1:16772223-16772242 | MS.gene79407:CDS | 40.0% | |
| ! | AATGACAAAGTACTCAGCCA+AGG | + | chr3.1:16771984-16772003 | None:intergenic | 40.0% |
| ! | GCCGGATAAAGAAATGGATT+TGG | - | chr3.1:16772065-16772084 | MS.gene79407:CDS | 40.0% |
| ! | TTTTGGTGAGGCCATAACAA+TGG | - | chr3.1:16772222-16772241 | MS.gene79407:CDS | 40.0% |
| !! | CTTGGATTTGTTGCACAAGT+TGG | + | chr3.1:16772665-16772684 | None:intergenic | 40.0% |
| !! | GCGCCTTTTAAATTTTGGTG+AGG | - | chr3.1:16772210-16772229 | MS.gene79407:CDS | 40.0% |
| AAGCAGATTCTCGGAGACTT+TGG | - | chr3.1:16772139-16772158 | MS.gene79407:CDS | 45.0% | |
| ATCAATAGTACTGCTCGCCT+CGG | + | chr3.1:16771852-16771871 | None:intergenic | 45.0% | |
| CCTGCTTACCGAAGTTATAC+CGG | - | chr3.1:16773042-16773061 | MS.gene79407:CDS | 45.0% | |
| GAAGCTATGAGAAGGTGACT+TGG | - | chr3.1:16772833-16772852 | MS.gene79407:CDS | 45.0% | |
| GAAGTGGATCAAGTATACGG+TGG | - | chr3.1:16773089-16773108 | MS.gene79407:CDS | 45.0% | |
| GCTGAAACATGCCAACATGT+CGG | + | chr3.1:16772804-16772823 | None:intergenic | 45.0% | |
| GTCAAGGCTTAAGGATGAGT+TGG | - | chr3.1:16771676-16771695 | MS.gene79407:CDS | 45.0% | |
| TGTGTGCGTTCCCATTGTTA+TGG | + | chr3.1:16772236-16772255 | None:intergenic | 45.0% | |
| ! | GAAATGGATTTGGGCGATGA+AGG | - | chr3.1:16772075-16772094 | MS.gene79407:CDS | 45.0% |
| ! | GCACAAGTTGGATTCTAGAG+TGG | + | chr3.1:16772653-16772672 | None:intergenic | 45.0% |
| ! | GGCGAGCAGTACTATTGATT+TGG | - | chr3.1:16771853-16771872 | MS.gene79407:CDS | 45.0% |
| !!! | GGTTTTGGAACTTCTAGCAG+TGG | - | chr3.1:16772291-16772310 | MS.gene79407:CDS | 45.0% |
| CCGGTATAACTTCGGTAAGC+AGG | + | chr3.1:16773045-16773064 | None:intergenic | 50.0% | |
| GAGGTTTCGAGGAGTAGTGA+CGG | - | chr3.1:16771818-16771837 | MS.gene79407:CDS | 50.0% | |
| TAGTGACGGTATCCAATCCG+AGG | - | chr3.1:16771832-16771851 | MS.gene79407:CDS | 50.0% | |
| TGCTTCAAGGAGAGAAGCCT+TGG | - | chr3.1:16771964-16771983 | MS.gene79407:CDS | 50.0% | |
| AGATGGTGAACACCTCCACC+AGG | + | chr3.1:16772463-16772482 | None:intergenic | 55.0% | |
| AGTGGCACTGCTTGAATCGC+CGG | - | chr3.1:16772047-16772066 | MS.gene79407:CDS | 55.0% | |
| TAGTACTGCTCGCCTCGGAT+TGG | + | chr3.1:16771847-16771866 | None:intergenic | 55.0% | |
| !! | TTCTGGCTTCGCCGACATGT+TGG | - | chr3.1:16772790-16772809 | MS.gene79407:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 16771518 | 16773188 | 16771518 | ID=MS.gene79407 |
| chr3.1 | mRNA | 16771518 | 16773188 | 16771518 | ID=MS.gene79407.t1;Parent=MS.gene79407 |
| chr3.1 | exon | 16771518 | 16773188 | 16771518 | ID=MS.gene79407.t1.exon1;Parent=MS.gene79407.t1 |
| chr3.1 | CDS | 16771518 | 16773188 | 16771518 | ID=cds.MS.gene79407.t1;Parent=MS.gene79407.t1 |
| Gene Sequence |
| Protein sequence |
