Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79661.t1 | KEH44262.1 | 97.6 | 247 | 6 | 0 | 1 | 247 | 88 | 334 | 9.90E-129 | 469.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79661.t1 | P51281 | 64.1 | 245 | 88 | 0 | 3 | 247 | 11 | 255 | 1.6e-82 | 307.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79661.t1 | A0A072VS51 | 97.6 | 247 | 6 | 0 | 1 | 247 | 88 | 334 | 7.1e-129 | 469.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049378 | MS.gene79661 | 0.823744 | 1.17E-53 | -1.69E-46 |
| MS.gene050226 | MS.gene79661 | 0.807928 | 3.98E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene79661 | 0.830901 | 2.26E-55 | -1.69E-46 |
| MS.gene050763 | MS.gene79661 | 0.832094 | 1.15E-55 | -1.69E-46 |
| MS.gene05316 | MS.gene79661 | 0.801068 | 1.07E-48 | -1.69E-46 |
| MS.gene054379 | MS.gene79661 | 0.823246 | 1.54E-53 | -1.69E-46 |
| MS.gene054826 | MS.gene79661 | 0.805705 | 1.17E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene79661 | 0.817806 | 2.72E-52 | -1.69E-46 |
| MS.gene055701 | MS.gene79661 | 0.80516 | 1.53E-49 | -1.69E-46 |
| MS.gene057610 | MS.gene79661 | 0.803977 | 2.69E-49 | -1.69E-46 |
| MS.gene057929 | MS.gene79661 | 0.812927 | 3.31E-51 | -1.69E-46 |
| MS.gene058949 | MS.gene79661 | 0.813267 | 2.79E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79661.t1 | MTR_1g111400 | 97.571 | 247 | 6 | 0 | 1 | 247 | 88 | 334 | 2.73e-173 | 487 |
| MS.gene79661.t1 | MTR_1g111400 | 97.571 | 247 | 6 | 0 | 1 | 247 | 88 | 334 | 2.59e-171 | 489 |
| MS.gene79661.t1 | MTR_8g463650 | 68.699 | 246 | 77 | 0 | 2 | 247 | 71 | 316 | 3.16e-121 | 353 |
| MS.gene79661.t1 | MTR_8g463650 | 68.699 | 246 | 77 | 0 | 2 | 247 | 71 | 316 | 6.34e-121 | 353 |
| MS.gene79661.t1 | MTR_8g463650 | 68.699 | 246 | 77 | 0 | 2 | 247 | 71 | 316 | 1.46e-120 | 355 |
| MS.gene79661.t1 | MTR_8g463650 | 68.699 | 246 | 77 | 0 | 2 | 247 | 71 | 316 | 3.80e-119 | 355 |
| MS.gene79661.t1 | MTR_1g076810 | 55.645 | 248 | 108 | 1 | 2 | 247 | 333 | 580 | 9.77e-88 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79661.t1 | AT3G10420 | 80.488 | 246 | 48 | 0 | 2 | 247 | 100 | 345 | 5.73e-139 | 402 |
| MS.gene79661.t1 | AT3G10420 | 80.488 | 246 | 48 | 0 | 2 | 247 | 100 | 345 | 9.38e-138 | 403 |
| MS.gene79661.t1 | AT1G73170 | 65.854 | 246 | 84 | 0 | 2 | 247 | 84 | 329 | 1.33e-114 | 343 |
| MS.gene79661.t1 | AT1G73170 | 65.854 | 246 | 84 | 0 | 2 | 247 | 84 | 329 | 1.36e-114 | 343 |
| MS.gene79661.t1 | AT1G33290 | 56.917 | 253 | 105 | 2 | 2 | 251 | 49 | 300 | 2.62e-95 | 285 |
| MS.gene79661.t1 | AT1G73170 | 69.892 | 186 | 56 | 0 | 62 | 247 | 16 | 201 | 3.34e-92 | 282 |
| MS.gene79661.t1 | AT1G33290 | 59.912 | 227 | 87 | 2 | 28 | 251 | 1 | 226 | 6.18e-91 | 271 |
| MS.gene79661.t1 | AT1G33290 | 55.030 | 169 | 72 | 2 | 2 | 167 | 49 | 216 | 6.06e-56 | 182 |
| MS.gene79661.t1 | AT1G73170 | 67.273 | 55 | 18 | 0 | 193 | 247 | 1 | 55 | 1.71e-17 | 81.6 |
Find 69 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAAGTTGTTATGGATTT+AGG | 0.171222 | 7.3:-89022471 | MS.gene79661:CDS |
| ACCATTATAATTGATGAAAT+TGG | 0.186337 | 7.3:-89021173 | MS.gene79661:CDS |
| TGCAGAGCTTGATATGTTTC+TGG | 0.187322 | 7.3:-89022553 | None:intergenic |
| TCATCAATTATAATGGTTTC+AGG | 0.225693 | 7.3:+89021179 | None:intergenic |
| CTAGATTCCCTTCTGGTGAT+TGG | 0.254727 | 7.3:-89022434 | MS.gene79661:CDS |
| TCCAATTTCATCAATTATAA+TGG | 0.266424 | 7.3:+89021172 | None:intergenic |
| TTAAAATGTTGACCTGATTA+AGG | 0.273025 | 7.3:+89021685 | None:intergenic |
| GCGTAAATCATCATGGTTAA+TGG | 0.273696 | 7.3:+89022395 | None:intergenic |
| GTGGATACATCCAATGAAAT+TGG | 0.294748 | 7.3:-89021427 | MS.gene79661:CDS |
| TGGACTCATTAAAGTTGTTA+TGG | 0.331055 | 7.3:-89022478 | MS.gene79661:CDS |
| CCTTATCTTCAGATCCTTGT+TGG | 0.338669 | 7.3:-89021050 | MS.gene79661:CDS |
| TTTACGCCACGCCATTTCTA+AGG | 0.343073 | 7.3:-89022379 | MS.gene79661:intron |
| ATTATAAATCATAACCTTGA+AGG | 0.348091 | 7.3:+89020991 | None:intergenic |
| TTATGTTGCATATTCACATT+TGG | 0.361210 | 7.3:+89021349 | None:intergenic |
| CCACTATTACTACGCGCTTC+AGG | 0.363898 | 7.3:+89021446 | None:intergenic |
| TAGATTCCCTTCTGGTGATT+GGG | 0.380201 | 7.3:-89022433 | MS.gene79661:CDS |
| TCCGTCACCTCCAATTTCAT+TGG | 0.385683 | 7.3:+89021417 | None:intergenic |
| CCTCTTGCTAGATTCCCTTC+TGG | 0.390859 | 7.3:-89022441 | MS.gene79661:CDS |
| TGCTCAAAGAAGAGTTCAAT+TGG | 0.393531 | 7.3:-89021117 | MS.gene79661:CDS |
| TGCTAAAATCATACATGATC+TGG | 0.404375 | 7.3:-89021762 | MS.gene79661:CDS |
| ATTCTTCATTATGCTTTCAA+TGG | 0.418087 | 7.3:+89021073 | None:intergenic |
| CGTAAATCATCATGGTTAAT+GGG | 0.421646 | 7.3:+89022396 | None:intergenic |
| TTGGTAAAACTACCTTAATC+AGG | 0.424584 | 7.3:-89021697 | MS.gene79661:intron |
| TTCCTCATGCAGGCATAGAC+AGG | 0.433647 | 7.3:-89021390 | MS.gene79661:CDS |
| TGAGGAAGGAGGTTCTATAT+TGG | 0.434005 | 7.3:-89021738 | MS.gene79661:CDS |
| GGAGGTTCTATATTGGTCAT+TGG | 0.436397 | 7.3:-89021731 | MS.gene79661:CDS |
| GTTTCTGGAACTTCTTCCAT+TGG | 0.437811 | 7.3:-89022538 | MS.gene79661:CDS |
| ATATTGGTCATTGGACCTCC+TGG | 0.442400 | 7.3:-89021722 | MS.gene79661:CDS |
| AGAGTAGAGTACCTTAGAAA+TGG | 0.453739 | 7.3:+89022368 | None:intergenic |
| CAAAGAAGAGTTCAATTGGT+TGG | 0.455575 | 7.3:-89021113 | MS.gene79661:CDS |
| GATCCTTGTTGGTGGTATAG+AGG | 0.456580 | 7.3:-89021039 | MS.gene79661:CDS |
| TAATGAGTCCACCAATCTCT+TGG | 0.468779 | 7.3:+89022490 | None:intergenic |
| AACCGTCAGATGCAAATCAT+TGG | 0.469178 | 7.3:-89021821 | MS.gene79661:CDS |
| CCTGAAGCGCGTAGTAATAG+TGG | 0.478310 | 7.3:-89021446 | MS.gene79661:CDS |
| CCAACAAGGATCTGAAGATA+AGG | 0.493089 | 7.3:+89021050 | None:intergenic |
| CAATTGGTTGGAACAGCACA+TGG | 0.496072 | 7.3:-89021101 | MS.gene79661:CDS |
| TATCTTCAGATCCTTGTTGG+TGG | 0.497033 | 7.3:-89021047 | MS.gene79661:CDS |
| CAGAGAGACTGCTAGGATGC+TGG | 0.505835 | 7.3:-89021479 | MS.gene79661:CDS |
| ATTGGCCTTACTTGTCGTGT+TGG | 0.509211 | 7.3:-89021803 | MS.gene79661:CDS |
| CTCGACCAACACGACAAGTA+AGG | 0.517747 | 7.3:+89021798 | None:intergenic |
| GTCATTGGACCTCCTGGTGT+TGG | 0.524184 | 7.3:-89021716 | MS.gene79661:CDS |
| TTGTATCGCCACCAAGAGAT+TGG | 0.524330 | 7.3:-89022501 | MS.gene79661:CDS |
| TGCATCGTATAAGTGCAATT+CGG | 0.526874 | 7.3:-89021844 | MS.gene79661:CDS |
| TTGAACTCTTCTTTGAGCAA+TGG | 0.538792 | 7.3:+89021121 | None:intergenic |
| TCCAATGAAATTGGAGGTGA+CGG | 0.539462 | 7.3:-89021418 | MS.gene79661:CDS |
| GGCCAATGATTTGCATCTGA+CGG | 0.543218 | 7.3:+89021819 | None:intergenic |
| GACGGAGATGTTCCTCATGC+AGG | 0.549892 | 7.3:-89021400 | MS.gene79661:CDS |
| AATCATACATGATCTGGTTG+AGG | 0.551401 | 7.3:-89021756 | MS.gene79661:CDS |
| AATTCCATCGTCATCTCCAA+TGG | 0.559273 | 7.3:+89022522 | None:intergenic |
| ATGCAGGCATAGACAGGGCG+AGG | 0.577826 | 7.3:-89021384 | MS.gene79661:CDS |
| TGAGTCCACCAATCTCTTGG+TGG | 0.585738 | 7.3:+89022493 | None:intergenic |
| TACTTGTCGTGTTGGTCGAG+CGG | 0.590539 | 7.3:-89021795 | MS.gene79661:CDS |
| GATTGTGCAGAGAGACTGCT+AGG | 0.591378 | 7.3:-89021486 | MS.gene79661:intron |
| GATACATCCAATGAAATTGG+AGG | 0.595729 | 7.3:-89021424 | MS.gene79661:CDS |
| TATCGCCACCAAGAGATTGG+TGG | 0.601041 | 7.3:-89022498 | MS.gene79661:CDS |
| ATACATGATCTGGTTGAGGA+AGG | 0.605235 | 7.3:-89021752 | MS.gene79661:CDS |
| CATGATCTGGTTGAGGAAGG+AGG | 0.608961 | 7.3:-89021749 | MS.gene79661:CDS |
| TCTTCCATTGGAGATGACGA+TGG | 0.616463 | 7.3:-89022526 | MS.gene79661:CDS |
| TGGCGTGGCGTAAATCATCA+TGG | 0.622075 | 7.3:+89022388 | None:intergenic |
| TCCTCATGCAGGCATAGACA+GGG | 0.622405 | 7.3:-89021389 | MS.gene79661:CDS |
| GAAATGACCCAATCACCAGA+AGG | 0.627070 | 7.3:+89022426 | None:intergenic |
| CGTGTTGGTCGAGCGGTGAG+TGG | 0.630353 | 7.3:-89021788 | MS.gene79661:CDS |
| ATGAGCTATCAATACCAGAT+CGG | 0.639378 | 7.3:+89021867 | None:intergenic |
| AAATGACCCAATCACCAGAA+GGG | 0.644980 | 7.3:+89022427 | None:intergenic |
| AGAGTACCTTAGAAATGGCG+TGG | 0.660342 | 7.3:+89022373 | None:intergenic |
| GCCCTGTCTATGCCTGCATG+AGG | 0.661526 | 7.3:+89021388 | None:intergenic |
| CCAGAAGGGAATCTAGCAAG+AGG | 0.661778 | 7.3:+89022441 | None:intergenic |
| CAGGCATAGACAGGGCGAGG+AGG | 0.670464 | 7.3:-89021381 | MS.gene79661:CDS |
| GCACCTCTATACCACCAACA+AGG | 0.695466 | 7.3:+89021036 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAACTAGATAAAATAAAA+AGG | + | chr7.3:89022009-89022028 | None:intergenic | 15.0% |
| !! | AAAATAAAAAGGAAACTGAT+AGG | + | chr7.3:89021998-89022017 | None:intergenic | 20.0% |
| !! | AATTGTTTATCCAAAAATAG+AGG | + | chr7.3:89021191-89021210 | None:intergenic | 20.0% |
| !! | ACCATTATAATTGATGAAAT+TGG | - | chr7.3:89022359-89022378 | MS.gene79661:intron | 20.0% |
| !! | ATAACTAAATAAATGTCGAA+AGG | - | chr7.3:89021562-89021581 | MS.gene79661:intron | 20.0% |
| !! | ATTAAAGTTGTTATGGATTT+AGG | - | chr7.3:89021061-89021080 | MS.gene79661:CDS | 20.0% |
| !! | TCCAATTTCATCAATTATAA+TGG | + | chr7.3:89022363-89022382 | None:intergenic | 20.0% |
| !!! | TCAGTTTGTATTTTTAATGT+GGG | - | chr7.3:89021311-89021330 | MS.gene79661:intron | 20.0% |
| ! | ATTCTTCATTATGCTTTCAA+TGG | + | chr7.3:89022462-89022481 | None:intergenic | 25.0% |
| ! | GTAAAGTTAATAAAGAACGT+TGG | + | chr7.3:89021339-89021358 | None:intergenic | 25.0% |
| ! | TCATCAATTATAATGGTTTC+AGG | + | chr7.3:89022356-89022375 | None:intergenic | 25.0% |
| ! | TTAAAATGTTGACCTGATTA+AGG | + | chr7.3:89021850-89021869 | None:intergenic | 25.0% |
| ! | TTATGTTGCATATTCACATT+TGG | + | chr7.3:89022186-89022205 | None:intergenic | 25.0% |
| !! | GTTGTTTGGTTTATTGTTAT+AGG | - | chr7.3:89021620-89021639 | MS.gene79661:intron | 25.0% |
| !! | TAATGGATATAATGGTTGTT+TGG | - | chr7.3:89021606-89021625 | MS.gene79661:intron | 25.0% |
| !! | TTTGGTTTATTGTTATAGGT+TGG | - | chr7.3:89021624-89021643 | MS.gene79661:intron | 25.0% |
| !!! | CAGTTTGTATTTTTAATGTG+GGG | - | chr7.3:89021312-89021331 | MS.gene79661:intron | 25.0% |
| !!! | CTCAGTTTGTATTTTTAATG+TGG | - | chr7.3:89021310-89021329 | MS.gene79661:intron | 25.0% |
| !!! | CTCTTATTTATTTTCCTTCA+AGG | - | chr7.3:89022527-89022546 | MS.gene79661:CDS | 25.0% |
| !!! | TTGAAGAGTAATGGATATAA+TGG | - | chr7.3:89021598-89021617 | MS.gene79661:intron | 25.0% |
| !!! | TTTTTGTTGTTGAAGAGTAA+TGG | - | chr7.3:89021589-89021608 | MS.gene79661:intron | 25.0% |
| ATTTGCAATCTAATCTTCAG+TGG | - | chr7.3:89022272-89022291 | MS.gene79661:intron | 30.0% | |
| CATACATCATACGTAAAAGT+GGG | + | chr7.3:89021402-89021421 | None:intergenic | 30.0% | |
| CATTAGCAAAAACTCAAGTT+TGG | + | chr7.3:89021528-89021547 | None:intergenic | 30.0% | |
| CGTAAATCATCATGGTTAAT+GGG | + | chr7.3:89021139-89021158 | None:intergenic | 30.0% | |
| TGCTAAAATCATACATGATC+TGG | - | chr7.3:89021770-89021789 | MS.gene79661:CDS | 30.0% | |
| TGGACTCATTAAAGTTGTTA+TGG | - | chr7.3:89021054-89021073 | MS.gene79661:CDS | 30.0% | |
| TTGGTAAAACTACCTTAATC+AGG | - | chr7.3:89021835-89021854 | MS.gene79661:CDS | 30.0% | |
| ! | CTTTTTACTATGTCTGTATG+TGG | - | chr7.3:89021875-89021894 | MS.gene79661:CDS | 30.0% |
| !! | AGCTAAGTGACTTGTTTATT+TGG | - | chr7.3:89021260-89021279 | MS.gene79661:intron | 30.0% |
| AATCATACATGATCTGGTTG+AGG | - | chr7.3:89021776-89021795 | MS.gene79661:CDS | 35.0% | |
| AATTGACTGCTTCGTCTTTA+TGG | - | chr7.3:89022235-89022254 | MS.gene79661:intron | 35.0% | |
| AGCTGATAACATACGAGTTT+AGG | + | chr7.3:89021494-89021513 | None:intergenic | 35.0% | |
| ATGAGCTATCAATACCAGAT+CGG | + | chr7.3:89021668-89021687 | None:intergenic | 35.0% | |
| CAAAGAAGAGTTCAATTGGT+TGG | - | chr7.3:89022419-89022438 | MS.gene79661:CDS | 35.0% | |
| CCATACATCATACGTAAAAG+TGG | + | chr7.3:89021403-89021422 | None:intergenic | 35.0% | |
| GATACATCCAATGAAATTGG+AGG | - | chr7.3:89022108-89022127 | MS.gene79661:intron | 35.0% | |
| GCGTAAATCATCATGGTTAA+TGG | + | chr7.3:89021140-89021159 | None:intergenic | 35.0% | |
| GTGGATACATCCAATGAAAT+TGG | - | chr7.3:89022105-89022124 | MS.gene79661:intron | 35.0% | |
| TAGTACCAATCTCAGTCATT+TGG | - | chr7.3:89022209-89022228 | MS.gene79661:intron | 35.0% | |
| TGCATCGTATAAGTGCAATT+CGG | - | chr7.3:89021688-89021707 | MS.gene79661:intron | 35.0% | |
| TGCTCAAAGAAGAGTTCAAT+TGG | - | chr7.3:89022415-89022434 | MS.gene79661:CDS | 35.0% | |
| TTAAGCCAAATGACTGAGAT+TGG | + | chr7.3:89022217-89022236 | None:intergenic | 35.0% | |
| TTGAACTCTTCTTTGAGCAA+TGG | + | chr7.3:89022414-89022433 | None:intergenic | 35.0% | |
| ! | AGAGTAGAGTACCTTAGAAA+TGG | + | chr7.3:89021167-89021186 | None:intergenic | 35.0% |
| ! | CTCTACTCTACCTCTATTTT+TGG | - | chr7.3:89021178-89021197 | MS.gene79661:CDS | 35.0% |
| ! | TGTTTCTTTGAAAATGCCAC+TGG | - | chr7.3:89021952-89021971 | MS.gene79661:intron | 35.0% |
| !! | CCACTTTTACGTATGATGTA+TGG | - | chr7.3:89021400-89021419 | MS.gene79661:CDS | 35.0% |
| !!! | GTTATAGGTTGGTGAGTTTT+CGG | - | chr7.3:89021635-89021654 | MS.gene79661:intron | 35.0% |
| AAATGACCCAATCACCAGAA+GGG | + | chr7.3:89021108-89021127 | None:intergenic | 40.0% | |
| AACCGTCAGATGCAAATCAT+TGG | - | chr7.3:89021711-89021730 | MS.gene79661:CDS | 40.0% | |
| AATTCCATCGTCATCTCCAA+TGG | + | chr7.3:89021013-89021032 | None:intergenic | 40.0% | |
| ACTATGTCTGTATGTGGAAC+TGG | - | chr7.3:89021881-89021900 | MS.gene79661:CDS | 40.0% | |
| ATACATGATCTGGTTGAGGA+AGG | - | chr7.3:89021780-89021799 | MS.gene79661:CDS | 40.0% | |
| CAGAAACAAACACATTCCAG+TGG | + | chr7.3:89021971-89021990 | None:intergenic | 40.0% | |
| CCAACAAGGATCTGAAGATA+AGG | + | chr7.3:89022485-89022504 | None:intergenic | 40.0% | |
| CCTTATCTTCAGATCCTTGT+TGG | - | chr7.3:89022482-89022501 | MS.gene79661:CDS | 40.0% | |
| GGAGGTTCTATATTGGTCAT+TGG | - | chr7.3:89021801-89021820 | MS.gene79661:CDS | 40.0% | |
| TAATGAGTCCACCAATCTCT+TGG | + | chr7.3:89021045-89021064 | None:intergenic | 40.0% | |
| TAGATTCCCTTCTGGTGATT+GGG | - | chr7.3:89021099-89021118 | MS.gene79661:CDS | 40.0% | |
| TATCTTCAGATCCTTGTTGG+TGG | - | chr7.3:89022485-89022504 | MS.gene79661:CDS | 40.0% | |
| TCCAATGAAATTGGAGGTGA+CGG | - | chr7.3:89022114-89022133 | MS.gene79661:intron | 40.0% | |
| TGAGGAAGGAGGTTCTATAT+TGG | - | chr7.3:89021794-89021813 | MS.gene79661:CDS | 40.0% | |
| !! | AAGGTAGTTTTACCAACACC+AGG | + | chr7.3:89021831-89021850 | None:intergenic | 40.0% |
| !! | GTTTCTGGAACTTCTTCCAT+TGG | - | chr7.3:89020994-89021013 | MS.gene79661:CDS | 40.0% |
| ACCTAGCTAGTAGCAGATAG+TGG | + | chr7.3:89021467-89021486 | None:intergenic | 45.0% | |
| ATATTGGTCATTGGACCTCC+TGG | - | chr7.3:89021810-89021829 | MS.gene79661:CDS | 45.0% | |
| CAATTGGTTGGAACAGCACA+TGG | - | chr7.3:89022431-89022450 | MS.gene79661:CDS | 45.0% | |
| CTAGATTCCCTTCTGGTGAT+TGG | - | chr7.3:89021098-89021117 | MS.gene79661:CDS | 45.0% | |
| GAAATGACCCAATCACCAGA+AGG | + | chr7.3:89021109-89021128 | None:intergenic | 45.0% | |
| TCCACTATCTGCTACTAGCT+AGG | - | chr7.3:89021463-89021482 | MS.gene79661:CDS | 45.0% | |
| TCCGTCACCTCCAATTTCAT+TGG | + | chr7.3:89022118-89022137 | None:intergenic | 45.0% | |
| TCTTCCATTGGAGATGACGA+TGG | - | chr7.3:89021006-89021025 | MS.gene79661:CDS | 45.0% | |
| TTGTATCGCCACCAAGAGAT+TGG | - | chr7.3:89021031-89021050 | MS.gene79661:CDS | 45.0% | |
| TTTACGCCACGCCATTTCTA+AGG | - | chr7.3:89021153-89021172 | MS.gene79661:CDS | 45.0% | |
| ! | AGAGTACCTTAGAAATGGCG+TGG | + | chr7.3:89021162-89021181 | None:intergenic | 45.0% |
| ! | GGCCAATGATTTGCATCTGA+CGG | + | chr7.3:89021716-89021735 | None:intergenic | 45.0% |
| ! | TTTTCGGATGACAACCGATC+TGG | - | chr7.3:89021651-89021670 | MS.gene79661:intron | 45.0% |
| !! | ATTGGCCTTACTTGTCGTGT+TGG | - | chr7.3:89021729-89021748 | MS.gene79661:CDS | 45.0% |
| !! | GATCCTTGTTGGTGGTATAG+AGG | - | chr7.3:89022493-89022512 | MS.gene79661:CDS | 45.0% |
| !! | GTAGTTTTACCAACACCAGG+AGG | + | chr7.3:89021828-89021847 | None:intergenic | 45.0% |
| !! | ACATTAATTAATTAATTAAT+TGG | - | chr7.3:89021357-89021376 | MS.gene79661:CDS | 5.0% |
| CATGATCTGGTTGAGGAAGG+AGG | - | chr7.3:89021783-89021802 | MS.gene79661:CDS | 50.0% | |
| CCACTATTACTACGCGCTTC+AGG | + | chr7.3:89022089-89022108 | None:intergenic | 50.0% | |
| CCAGAAGGGAATCTAGCAAG+AGG | + | chr7.3:89021094-89021113 | None:intergenic | 50.0% | |
| CCTCTTGCTAGATTCCCTTC+TGG | - | chr7.3:89021091-89021110 | MS.gene79661:CDS | 50.0% | |
| CCTGAAGCGCGTAGTAATAG+TGG | - | chr7.3:89022086-89022105 | MS.gene79661:intron | 50.0% | |
| CTCGACCAACACGACAAGTA+AGG | + | chr7.3:89021737-89021756 | None:intergenic | 50.0% | |
| GATTGTGCAGAGAGACTGCT+AGG | - | chr7.3:89022046-89022065 | MS.gene79661:intron | 50.0% | |
| GCACCTCTATACCACCAACA+AGG | + | chr7.3:89022499-89022518 | None:intergenic | 50.0% | |
| TATCGCCACCAAGAGATTGG+TGG | - | chr7.3:89021034-89021053 | MS.gene79661:CDS | 50.0% | |
| TCCTCATGCAGGCATAGACA+GGG | - | chr7.3:89022143-89022162 | MS.gene79661:intron | 50.0% | |
| TGAGTCCACCAATCTCTTGG+TGG | + | chr7.3:89021042-89021061 | None:intergenic | 50.0% | |
| TGGCGTGGCGTAAATCATCA+TGG | + | chr7.3:89021147-89021166 | None:intergenic | 50.0% | |
| TTCCTCATGCAGGCATAGAC+AGG | - | chr7.3:89022142-89022161 | MS.gene79661:intron | 50.0% | |
| ! | TACTTGTCGTGTTGGTCGAG+CGG | - | chr7.3:89021737-89021756 | MS.gene79661:CDS | 50.0% |
| CAGAGAGACTGCTAGGATGC+TGG | - | chr7.3:89022053-89022072 | MS.gene79661:intron | 55.0% | |
| GACGGAGATGTTCCTCATGC+AGG | - | chr7.3:89022132-89022151 | MS.gene79661:intron | 55.0% | |
| GTCATTGGACCTCCTGGTGT+TGG | - | chr7.3:89021816-89021835 | MS.gene79661:CDS | 55.0% | |
| ATGCAGGCATAGACAGGGCG+AGG | - | chr7.3:89022148-89022167 | MS.gene79661:intron | 60.0% | |
| GCCCTGTCTATGCCTGCATG+AGG | + | chr7.3:89022147-89022166 | None:intergenic | 60.0% | |
| CAGGCATAGACAGGGCGAGG+AGG | - | chr7.3:89022151-89022170 | MS.gene79661:intron | 65.0% | |
| ! | CGTGTTGGTCGAGCGGTGAG+TGG | - | chr7.3:89021744-89021763 | MS.gene79661:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 89020992 | 89022562 | 89020992 | ID=MS.gene79661 |
| chr7.3 | mRNA | 89020992 | 89022562 | 89020992 | ID=MS.gene79661.t1;Parent=MS.gene79661 |
| chr7.3 | exon | 89022380 | 89022562 | 89022380 | ID=MS.gene79661.t1.exon1;Parent=MS.gene79661.t1 |
| chr7.3 | CDS | 89022380 | 89022562 | 89022380 | ID=cds.MS.gene79661.t1;Parent=MS.gene79661.t1 |
| chr7.3 | exon | 89021698 | 89021912 | 89021698 | ID=MS.gene79661.t1.exon2;Parent=MS.gene79661.t1 |
| chr7.3 | CDS | 89021698 | 89021912 | 89021698 | ID=cds.MS.gene79661.t1;Parent=MS.gene79661.t1 |
| chr7.3 | exon | 89021348 | 89021498 | 89021348 | ID=MS.gene79661.t1.exon3;Parent=MS.gene79661.t1 |
| chr7.3 | CDS | 89021348 | 89021498 | 89021348 | ID=cds.MS.gene79661.t1;Parent=MS.gene79661.t1 |
| chr7.3 | exon | 89020992 | 89021231 | 89020992 | ID=MS.gene79661.t1.exon4;Parent=MS.gene79661.t1 |
| chr7.3 | CDS | 89020992 | 89021231 | 89020992 | ID=cds.MS.gene79661.t1;Parent=MS.gene79661.t1 |
| Gene Sequence |
| Protein sequence |
