Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057610.t1 | XP_003613544.1 | 95.2 | 126 | 6 | 0 | 1 | 126 | 1 | 126 | 5.00E-62 | 246.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057610.t1 | Q38879 | 46.8 | 111 | 59 | 0 | 15 | 125 | 22 | 132 | 1.4e-28 | 127.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057610.t1 | D8L5E0 | 95.2 | 126 | 6 | 0 | 1 | 126 | 1 | 126 | 3.6e-62 | 246.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049356 | MS.gene057610 | 0.800457 | 1.43E-48 | -1.69E-46 |
MS.gene050971 | MS.gene057610 | 0.801084 | 1.06E-48 | -1.69E-46 |
MS.gene05316 | MS.gene057610 | 0.81885 | 1.58E-52 | -1.69E-46 |
MS.gene055909 | MS.gene057610 | 0.803224 | 3.86E-49 | -1.69E-46 |
MS.gene055911 | MS.gene057610 | 0.800144 | 1.65E-48 | -1.69E-46 |
MS.gene057609 | MS.gene057610 | 0.93028 | 2.06E-93 | -1.69E-46 |
MS.gene057610 | MS.gene058007 | 0.801547 | 8.55E-49 | -1.69E-46 |
MS.gene057610 | MS.gene058075 | 0.833782 | 4.38E-56 | -1.69E-46 |
MS.gene057610 | MS.gene058949 | 0.809449 | 1.88E-50 | -1.69E-46 |
MS.gene057610 | MS.gene059674 | 0.808325 | 3.27E-50 | -1.69E-46 |
MS.gene057610 | MS.gene059807 | 0.83322 | 6.04E-56 | -1.69E-46 |
MS.gene057610 | MS.gene059876 | 0.822539 | 2.24E-53 | -1.69E-46 |
MS.gene057610 | MS.gene063427 | 0.813455 | 2.54E-51 | -1.69E-46 |
MS.gene057610 | MS.gene06475 | 0.801697 | 7.97E-49 | -1.69E-46 |
MS.gene057610 | MS.gene065164 | 0.843833 | 1.10E-58 | -1.69E-46 |
MS.gene057610 | MS.gene065166 | 0.809554 | 1.79E-50 | -1.69E-46 |
MS.gene057610 | MS.gene06573 | 0.802541 | 5.34E-49 | -1.69E-46 |
MS.gene057610 | MS.gene066009 | 0.841456 | 4.70E-58 | -1.69E-46 |
MS.gene057610 | MS.gene066921 | 0.849352 | 3.42E-60 | -1.69E-46 |
MS.gene057610 | MS.gene069435 | 0.822725 | 2.03E-53 | -1.69E-46 |
MS.gene057610 | MS.gene069717 | 0.841335 | 5.06E-58 | -1.69E-46 |
MS.gene057610 | MS.gene069870 | 0.803266 | 3.78E-49 | -1.69E-46 |
MS.gene057610 | MS.gene071722 | 0.811408 | 7.11E-51 | -1.69E-46 |
MS.gene057610 | MS.gene073452 | 0.802827 | 4.66E-49 | -1.69E-46 |
MS.gene057610 | MS.gene08499 | 0.821433 | 4.05E-53 | -1.69E-46 |
MS.gene057610 | MS.gene20264 | 0.819063 | 1.41E-52 | -1.69E-46 |
MS.gene057610 | MS.gene21471 | 0.834318 | 3.21E-56 | -1.69E-46 |
MS.gene057610 | MS.gene21571 | 0.810275 | 1.25E-50 | -1.69E-46 |
MS.gene057610 | MS.gene21790 | 0.825145 | 5.50E-54 | -1.69E-46 |
MS.gene057610 | MS.gene23016 | 0.810459 | 1.14E-50 | -1.69E-46 |
MS.gene057610 | MS.gene24611 | 0.803092 | 4.11E-49 | -1.69E-46 |
MS.gene057610 | MS.gene25670 | 0.854107 | 1.53E-61 | -1.69E-46 |
MS.gene057610 | MS.gene25682 | 0.860234 | 2.38E-63 | -1.69E-46 |
MS.gene057610 | MS.gene26704 | 0.882849 | 7.38E-71 | -1.69E-46 |
MS.gene057610 | MS.gene28694 | 0.819574 | 1.08E-52 | -1.69E-46 |
MS.gene057610 | MS.gene29709 | 0.803345 | 3.64E-49 | -1.69E-46 |
MS.gene057610 | MS.gene30932 | 0.80648 | 8.06E-50 | -1.69E-46 |
MS.gene057610 | MS.gene31035 | 0.815242 | 1.02E-51 | -1.69E-46 |
MS.gene057610 | MS.gene31298 | 0.804936 | 1.70E-49 | -1.69E-46 |
MS.gene057610 | MS.gene34496 | 0.840473 | 8.51E-58 | -1.69E-46 |
MS.gene057610 | MS.gene36105 | 0.818352 | 2.05E-52 | -1.69E-46 |
MS.gene057610 | MS.gene36309 | 0.806427 | 8.27E-50 | -1.69E-46 |
MS.gene057610 | MS.gene36353 | 0.819232 | 1.29E-52 | -1.69E-46 |
MS.gene057610 | MS.gene36818 | 0.813516 | 2.46E-51 | -1.69E-46 |
MS.gene057610 | MS.gene36952 | 0.802269 | 6.08E-49 | -1.69E-46 |
MS.gene057610 | MS.gene39360 | 0.805167 | 1.52E-49 | -1.69E-46 |
MS.gene057610 | MS.gene40499 | 0.84858 | 5.60E-60 | -1.69E-46 |
MS.gene057610 | MS.gene41435 | 0.835915 | 1.27E-56 | -1.69E-46 |
MS.gene057610 | MS.gene42746 | 0.840652 | 7.64E-58 | -1.69E-46 |
MS.gene057610 | MS.gene42747 | 0.83521 | 1.92E-56 | -1.69E-46 |
MS.gene057610 | MS.gene44228 | 0.813969 | 1.96E-51 | -1.69E-46 |
MS.gene057610 | MS.gene47820 | 0.801234 | 9.92E-49 | -1.69E-46 |
MS.gene057610 | MS.gene47821 | 0.803336 | 3.66E-49 | -1.69E-46 |
MS.gene057610 | MS.gene49092 | 0.827986 | 1.16E-54 | -1.69E-46 |
MS.gene057610 | MS.gene49610 | 0.921985 | 1.77E-88 | -1.69E-46 |
MS.gene057610 | MS.gene49612 | 0.939173 | 1.98E-99 | -1.69E-46 |
MS.gene057610 | MS.gene51922 | 0.806677 | 7.32E-50 | -1.69E-46 |
MS.gene057610 | MS.gene52873 | 0.835321 | 1.80E-56 | -1.69E-46 |
MS.gene057610 | MS.gene52997 | 0.827501 | 1.51E-54 | -1.69E-46 |
MS.gene057610 | MS.gene57920 | 0.806557 | 7.76E-50 | -1.69E-46 |
MS.gene057610 | MS.gene58345 | 0.819077 | 1.40E-52 | -1.69E-46 |
MS.gene057610 | MS.gene58518 | 0.942162 | 1.17E-101 | -1.69E-46 |
MS.gene057610 | MS.gene58519 | 0.927702 | 8.12E-92 | -1.69E-46 |
MS.gene057610 | MS.gene59925 | 0.814488 | 1.50E-51 | -1.69E-46 |
MS.gene057610 | MS.gene59980 | 0.805335 | 1.40E-49 | -1.69E-46 |
MS.gene057610 | MS.gene62087 | 0.806089 | 9.74E-50 | -1.69E-46 |
MS.gene057610 | MS.gene62935 | 0.821994 | 3.00E-53 | -1.69E-46 |
MS.gene057610 | MS.gene66892 | 0.821545 | 3.81E-53 | -1.69E-46 |
MS.gene057610 | MS.gene67422 | 0.817715 | 2.86E-52 | -1.69E-46 |
MS.gene057610 | MS.gene68982 | 0.812402 | 4.32E-51 | -1.69E-46 |
MS.gene057610 | MS.gene71450 | 0.827276 | 1.71E-54 | -1.69E-46 |
MS.gene057610 | MS.gene71489 | 0.81562 | 8.42E-52 | -1.69E-46 |
MS.gene057610 | MS.gene74802 | 0.804459 | 2.14E-49 | -1.69E-46 |
MS.gene057610 | MS.gene74803 | 0.812901 | 3.36E-51 | -1.69E-46 |
MS.gene057610 | MS.gene74804 | 0.815212 | 1.04E-51 | -1.69E-46 |
MS.gene057610 | MS.gene75014 | 0.803552 | 3.30E-49 | -1.69E-46 |
MS.gene057610 | MS.gene76535 | 0.826098 | 3.27E-54 | -1.69E-46 |
MS.gene057610 | MS.gene78205 | 0.824074 | 9.83E-54 | -1.69E-46 |
MS.gene057610 | MS.gene79661 | 0.803977 | 2.69E-49 | -1.69E-46 |
MS.gene057610 | MS.gene81237 | 0.803364 | 3.61E-49 | -1.69E-46 |
MS.gene057610 | MS.gene81859 | 0.828131 | 1.07E-54 | -1.69E-46 |
MS.gene057610 | MS.gene84401 | 0.814544 | 1.46E-51 | -1.69E-46 |
MS.gene057610 | MS.gene85151 | 0.80503 | 1.63E-49 | -1.69E-46 |
MS.gene057610 | MS.gene89675 | 0.827675 | 1.37E-54 | -1.69E-46 |
MS.gene057610 | MS.gene94191 | 0.80071 | 1.27E-48 | -1.69E-46 |
MS.gene057610 | MS.gene95702 | 0.800439 | 1.44E-48 | -1.69E-46 |
MS.gene057610 | MS.gene97270 | 0.804441 | 2.16E-49 | -1.69E-46 |
MS.gene057610 | MS.gene99874 | 0.827435 | 1.57E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057610.t1 | MTR_5g037890 | 95.238 | 126 | 6 | 0 | 1 | 126 | 1 | 126 | 1.30e-80 | 233 |
MS.gene057610.t1 | MTR_5g037950 | 63.492 | 126 | 45 | 1 | 1 | 125 | 1 | 126 | 5.08e-50 | 155 |
MS.gene057610.t1 | MTR_5g037930 | 63.281 | 128 | 45 | 1 | 1 | 126 | 1 | 128 | 7.69e-50 | 155 |
MS.gene057610.t1 | MTR_7g009070 | 54.717 | 106 | 48 | 0 | 20 | 125 | 28 | 133 | 6.35e-42 | 135 |
MS.gene057610.t1 | MTR_3g112410 | 43.243 | 111 | 63 | 0 | 14 | 124 | 2 | 112 | 2.41e-33 | 113 |
MS.gene057610.t1 | MTR_5g021180 | 41.441 | 111 | 65 | 0 | 14 | 124 | 4 | 114 | 4.64e-32 | 110 |
MS.gene057610.t1 | MTR_1g023140 | 38.938 | 113 | 69 | 0 | 14 | 126 | 2 | 114 | 2.26e-31 | 108 |
MS.gene057610.t1 | MTR_8g107460 | 38.462 | 104 | 64 | 0 | 18 | 121 | 254 | 357 | 5.69e-22 | 89.4 |
MS.gene057610.t1 | MTR_7g073680 | 35.238 | 105 | 68 | 0 | 17 | 121 | 23 | 127 | 5.93e-22 | 84.7 |
MS.gene057610.t1 | MTR_8g005320 | 33.333 | 105 | 70 | 0 | 17 | 121 | 25 | 129 | 6.82e-22 | 84.7 |
MS.gene057610.t1 | MTR_8g006685 | 33.333 | 105 | 70 | 0 | 17 | 121 | 94 | 198 | 1.01e-20 | 83.6 |
MS.gene057610.t1 | MTR_8g006560 | 33.333 | 105 | 70 | 0 | 17 | 121 | 94 | 198 | 1.01e-20 | 83.6 |
MS.gene057610.t1 | MTR_2g010750 | 36.190 | 105 | 67 | 0 | 18 | 122 | 9 | 113 | 1.84e-20 | 80.5 |
MS.gene057610.t1 | MTR_4g081380 | 36.449 | 107 | 64 | 2 | 18 | 122 | 10 | 114 | 1.02e-19 | 78.6 |
MS.gene057610.t1 | MTR_2g082590 | 31.429 | 105 | 72 | 0 | 18 | 122 | 10 | 114 | 1.86e-18 | 75.5 |
MS.gene057610.t1 | MTR_2g082590 | 32.743 | 113 | 67 | 2 | 10 | 122 | 24 | 127 | 3.04e-18 | 75.1 |
MS.gene057610.t1 | MTR_8g059015 | 34.091 | 88 | 56 | 2 | 38 | 123 | 87 | 174 | 3.47e-14 | 65.9 |
MS.gene057610.t1 | MTR_3g089065 | 31.313 | 99 | 63 | 3 | 27 | 123 | 76 | 171 | 8.72e-14 | 64.7 |
MS.gene057610.t1 | MTR_2g079420 | 34.091 | 88 | 56 | 2 | 38 | 123 | 84 | 171 | 2.11e-13 | 63.5 |
MS.gene057610.t1 | MTR_1g098660 | 29.070 | 86 | 58 | 2 | 39 | 123 | 77 | 160 | 6.41e-13 | 62.4 |
MS.gene057610.t1 | MTR_7g080250 | 34.091 | 88 | 57 | 1 | 40 | 126 | 94 | 181 | 1.14e-12 | 61.6 |
MS.gene057610.t1 | MTR_4g094690 | 30.488 | 82 | 55 | 1 | 44 | 123 | 85 | 166 | 1.88e-12 | 60.8 |
MS.gene057610.t1 | MTR_1g114290 | 32.911 | 79 | 49 | 2 | 38 | 115 | 84 | 159 | 6.88e-12 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057610.t1 | AT5G39950 | 46.847 | 111 | 59 | 0 | 15 | 125 | 22 | 132 | 5.89e-40 | 130 |
MS.gene057610.t1 | AT1G69880 | 47.664 | 107 | 56 | 0 | 17 | 123 | 36 | 142 | 5.44e-35 | 118 |
MS.gene057610.t1 | AT1G59730 | 40.541 | 111 | 66 | 0 | 15 | 125 | 18 | 128 | 1.98e-32 | 111 |
MS.gene057610.t1 | AT3G51030 | 39.091 | 110 | 67 | 0 | 14 | 123 | 2 | 111 | 1.92e-30 | 105 |
MS.gene057610.t1 | AT1G19730 | 42.982 | 114 | 64 | 1 | 14 | 126 | 2 | 115 | 3.79e-30 | 105 |
MS.gene057610.t1 | AT1G45145 | 42.056 | 107 | 62 | 0 | 18 | 124 | 5 | 111 | 4.48e-30 | 105 |
MS.gene057610.t1 | AT5G42980 | 41.284 | 109 | 64 | 0 | 18 | 126 | 5 | 113 | 1.33e-28 | 101 |
MS.gene057610.t1 | AT3G56420 | 38.043 | 92 | 57 | 0 | 28 | 119 | 50 | 141 | 4.14e-21 | 83.2 |
MS.gene057610.t1 | AT3G56420 | 38.043 | 92 | 57 | 0 | 28 | 119 | 50 | 141 | 4.14e-21 | 83.2 |
MS.gene057610.t1 | AT3G56420 | 38.043 | 92 | 57 | 0 | 28 | 119 | 50 | 141 | 4.14e-21 | 83.2 |
MS.gene057610.t1 | AT3G17880 | 36.893 | 103 | 65 | 0 | 19 | 121 | 271 | 373 | 1.08e-19 | 83.2 |
MS.gene057610.t1 | AT3G17880 | 36.893 | 103 | 65 | 0 | 19 | 121 | 264 | 366 | 1.10e-19 | 83.2 |
MS.gene057610.t1 | AT3G08710 | 32.432 | 111 | 73 | 1 | 11 | 121 | 18 | 126 | 3.66e-19 | 77.8 |
MS.gene057610.t1 | AT3G08710 | 32.432 | 111 | 73 | 1 | 11 | 121 | 18 | 126 | 3.66e-19 | 77.8 |
MS.gene057610.t1 | AT3G08710 | 32.432 | 111 | 73 | 1 | 11 | 121 | 18 | 126 | 3.66e-19 | 77.8 |
MS.gene057610.t1 | AT1G11530 | 32.381 | 105 | 71 | 0 | 18 | 122 | 2 | 106 | 1.39e-17 | 73.2 |
MS.gene057610.t1 | AT2G40790 | 34.783 | 92 | 60 | 0 | 28 | 119 | 50 | 141 | 7.75e-17 | 72.0 |
MS.gene057610.t1 | AT2G40790 | 34.783 | 92 | 60 | 0 | 28 | 119 | 50 | 141 | 7.75e-17 | 72.0 |
MS.gene057610.t1 | AT4G03520 | 39.759 | 83 | 48 | 2 | 43 | 123 | 101 | 183 | 3.29e-15 | 68.6 |
MS.gene057610.t1 | AT1G03680 | 39.506 | 81 | 47 | 2 | 45 | 123 | 97 | 177 | 8.01e-15 | 67.4 |
MS.gene057610.t1 | AT3G15360 | 32.967 | 91 | 53 | 3 | 38 | 123 | 102 | 189 | 1.30e-14 | 67.0 |
MS.gene057610.t1 | AT5G16400 | 35.227 | 88 | 56 | 1 | 40 | 126 | 97 | 184 | 7.35e-14 | 65.1 |
MS.gene057610.t1 | AT1G43560 | 26.496 | 117 | 81 | 3 | 1 | 112 | 33 | 149 | 1.22e-13 | 63.9 |
MS.gene057610.t1 | AT3G02730 | 36.782 | 87 | 54 | 1 | 41 | 126 | 88 | 174 | 1.25e-13 | 64.3 |
MS.gene057610.t1 | AT1G31020 | 30.000 | 120 | 78 | 2 | 6 | 123 | 41 | 156 | 1.82e-13 | 63.5 |
MS.gene057610.t1 | AT1G76760 | 27.368 | 95 | 62 | 3 | 33 | 120 | 70 | 164 | 1.66e-12 | 61.2 |
MS.gene057610.t1 | AT2G35010 | 34.940 | 83 | 50 | 2 | 44 | 123 | 110 | 191 | 2.07e-12 | 61.2 |
MS.gene057610.t1 | AT2G35010 | 34.940 | 83 | 50 | 2 | 44 | 123 | 110 | 191 | 2.07e-12 | 61.2 |
MS.gene057610.t1 | AT1G52990 | 30.769 | 91 | 61 | 2 | 34 | 123 | 222 | 311 | 4.25e-11 | 58.9 |
Find 22 sgRNAs with CRISPR-Local
Find 35 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CATTCCATTCCACTGCTAAA+TGG | 0.238150 | 5.4:-27185370 | MS.gene057610:CDS |
GCAGCAAAATCTTTCATAAC+TGG | 0.263663 | 5.4:+27185168 | None:intergenic |
GCTTGATGTTGATGAGTTAT+TGG | 0.264813 | 5.4:-27185118 | MS.gene057610:intron |
TTATTGATTTCTCAGCTAAA+TGG | 0.284865 | 5.4:-27185215 | MS.gene057610:CDS |
TAAAGTGGTGGGAGTGAGAA+AGG | 0.434933 | 5.4:-27184829 | MS.gene057610:CDS |
TTCTTAATGAGTAAAATAGT+TGG | 0.439170 | 5.4:+27184867 | None:intergenic |
GGGCGTTTCTCAAACATTCC+AGG | 0.471133 | 5.4:-27184901 | MS.gene057610:CDS |
GTGTGGACCTTGCAAAGTTA+TGG | 0.487071 | 5.4:-27185193 | MS.gene057610:CDS |
TAGCAGTGGAATGGAATGTA+AGG | 0.498154 | 5.4:+27185375 | None:intergenic |
ATACACAAAATTATACAAGT+TGG | 0.527315 | 5.4:+27185427 | None:intergenic |
CATTCCATTTAGCAGTGGAA+TGG | 0.530623 | 5.4:+27185366 | None:intergenic |
AGGAAATGTTGTTGATAAAG+TGG | 0.538365 | 5.4:-27184844 | MS.gene057610:CDS |
TGGAATGGAATGTAAGGACA+TGG | 0.568326 | 5.4:+27185381 | None:intergenic |
GATTTCTCAGCTAAATGGTG+TGG | 0.569817 | 5.4:-27185210 | MS.gene057610:CDS |
TAGTTGGCAATGAATGCACC+TGG | 0.594643 | 5.4:+27184883 | None:intergenic |
ACTGGATCCATAACTTTGCA+AGG | 0.602265 | 5.4:+27185186 | None:intergenic |
ATGAGCATTCCATTTAGCAG+TGG | 0.609708 | 5.4:+27185361 | None:intergenic |
AATGTTGTTGATAAAGTGGT+GGG | 0.647263 | 5.4:-27184840 | MS.gene057610:CDS |
AGTGGTGGGAGTGAGAAAGG+AGG | 0.648137 | 5.4:-27184826 | MS.gene057610:CDS |
AAATGTTGTTGATAAAGTGG+TGG | 0.651478 | 5.4:-27184841 | MS.gene057610:CDS |
TGAGAAAGGAGGAACTACAA+AGG | 0.675876 | 5.4:-27184815 | MS.gene057610:CDS |
GGAATGGAATGTAAGGACAT+GGG | 0.736550 | 5.4:+27185382 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAATAGCATTTATAAT+AGG | + | chr5.4:27185242-27185261 | None:intergenic | 10.0% |
!! | AATTAAACCTTATATAAAGT+TGG | + | chr5.4:27185183-27185202 | None:intergenic | 15.0% |
!!! | TTTTAAAGAAACTAATAAAC+TGG | - | chr5.4:27184895-27184914 | MS.gene057610:CDS | 15.0% |
!! | ATACACAAAATTATACAAGT+TGG | + | chr5.4:27184801-27184820 | None:intergenic | 20.0% |
!! | TGTAAAACCAACTTTATATA+AGG | - | chr5.4:27185173-27185192 | MS.gene057610:CDS | 20.0% |
!! | TTCTTAATGAGTAAAATAGT+TGG | + | chr5.4:27185361-27185380 | None:intergenic | 20.0% |
!!! | ACTATTTTACTCATTAAGAA+AGG | - | chr5.4:27185361-27185380 | MS.gene057610:CDS | 20.0% |
!!! | TCTTATGCATTATTTTTCTT+TGG | - | chr5.4:27184978-27184997 | MS.gene057610:intron | 20.0% |
!!! | TGTTTTTTCCACAATATAAA+TGG | - | chr5.4:27185296-27185315 | MS.gene057610:intron | 20.0% |
!!! | TTATTTTTCTTTGGTATAGA+TGG | - | chr5.4:27184987-27185006 | MS.gene057610:intron | 20.0% |
! | TAACAAACTAGTTAAAGTGA+AGG | + | chr5.4:27185148-27185167 | None:intergenic | 25.0% |
! | TATAAGGTTTAATTACTCGT+TGG | - | chr5.4:27185189-27185208 | MS.gene057610:CDS | 25.0% |
!!! | TTATTGATTTCTCAGCTAAA+TGG | - | chr5.4:27185010-27185029 | MS.gene057610:intron | 25.0% |
! | AAATGTTGTTGATAAAGTGG+TGG | - | chr5.4:27185384-27185403 | MS.gene057610:CDS | 30.0% |
! | AATGTTGTTGATAAAGTGGT+GGG | - | chr5.4:27185385-27185404 | MS.gene057610:CDS | 30.0% |
! | AGGAAATGTTGTTGATAAAG+TGG | - | chr5.4:27185381-27185400 | MS.gene057610:CDS | 30.0% |
CCACAATATAAATGGCAACA+GGG | - | chr5.4:27185304-27185323 | MS.gene057610:intron | 35.0% | |
GCAGCAAAATCTTTCATAAC+TGG | + | chr5.4:27185060-27185079 | None:intergenic | 35.0% | |
TCCACAATATAAATGGCAAC+AGG | - | chr5.4:27185303-27185322 | MS.gene057610:intron | 35.0% | |
! | GCTTGATGTTGATGAGTTAT+TGG | - | chr5.4:27185107-27185126 | MS.gene057610:intron | 35.0% |
ACTGGATCCATAACTTTGCA+AGG | + | chr5.4:27185042-27185061 | None:intergenic | 40.0% | |
ATGAGCATTCCATTTAGCAG+TGG | + | chr5.4:27184867-27184886 | None:intergenic | 40.0% | |
CATTCCATTCCACTGCTAAA+TGG | - | chr5.4:27184855-27184874 | MS.gene057610:CDS | 40.0% | |
CATTCCATTTAGCAGTGGAA+TGG | + | chr5.4:27184862-27184881 | None:intergenic | 40.0% | |
GATTTCTCAGCTAAATGGTG+TGG | - | chr5.4:27185015-27185034 | MS.gene057610:intron | 40.0% | |
GGAATGGAATGTAAGGACAT+GGG | + | chr5.4:27184846-27184865 | None:intergenic | 40.0% | |
TAGCAGTGGAATGGAATGTA+AGG | + | chr5.4:27184853-27184872 | None:intergenic | 40.0% | |
TGAGAAAGGAGGAACTACAA+AGG | - | chr5.4:27185410-27185429 | MS.gene057610:CDS | 40.0% | |
TGGAATGGAATGTAAGGACA+TGG | + | chr5.4:27184847-27184866 | None:intergenic | 40.0% | |
! | CCCTGTTGCCATTTATATTG+TGG | + | chr5.4:27185307-27185326 | None:intergenic | 40.0% |
GTGTGGACCTTGCAAAGTTA+TGG | - | chr5.4:27185032-27185051 | MS.gene057610:intron | 45.0% | |
TAGTTGGCAATGAATGCACC+TGG | + | chr5.4:27185345-27185364 | None:intergenic | 45.0% | |
! | TAAAGTGGTGGGAGTGAGAA+AGG | - | chr5.4:27185396-27185415 | MS.gene057610:CDS | 45.0% |
GGGCGTTTCTCAAACATTCC+AGG | - | chr5.4:27185324-27185343 | MS.gene057610:intron | 50.0% | |
! | AGTGGTGGGAGTGAGAAAGG+AGG | - | chr5.4:27185399-27185418 | MS.gene057610:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 27184791 | 27185456 | 27184791 | ID=MS.gene057610 |
chr5.4 | mRNA | 27184791 | 27185456 | 27184791 | ID=MS.gene057610.t1;Parent=MS.gene057610 |
chr5.4 | exon | 27185331 | 27185456 | 27185331 | ID=MS.gene057610.t1.exon1;Parent=MS.gene057610.t1 |
chr5.4 | CDS | 27185331 | 27185456 | 27185331 | ID=cds.MS.gene057610.t1;Parent=MS.gene057610.t1 |
chr5.4 | exon | 27185119 | 27185241 | 27185119 | ID=MS.gene057610.t1.exon2;Parent=MS.gene057610.t1 |
chr5.4 | CDS | 27185119 | 27185241 | 27185119 | ID=cds.MS.gene057610.t1;Parent=MS.gene057610.t1 |
chr5.4 | exon | 27184791 | 27184922 | 27184791 | ID=MS.gene057610.t1.exon3;Parent=MS.gene057610.t1 |
chr5.4 | CDS | 27184791 | 27184922 | 27184791 | ID=cds.MS.gene057610.t1;Parent=MS.gene057610.t1 |
Gene Sequence |
Protein sequence |