Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79875.t1 | XP_003601648.1 | 99 | 386 | 4 | 0 | 20 | 405 | 4 | 389 | 9.90E-221 | 775.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79875.t1 | P51081 | 96.1 | 386 | 15 | 0 | 20 | 405 | 4 | 389 | 5.2e-218 | 758.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79875.t1 | G7JA71 | 99.0 | 386 | 4 | 0 | 20 | 405 | 4 | 389 | 7.2e-221 | 775.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050883 | MS.gene79875 | 0.814666 | 1.37E-51 | -1.69E-46 |
| MS.gene051341 | MS.gene79875 | 0.812371 | 4.39E-51 | -1.69E-46 |
| MS.gene055961 | MS.gene79875 | 0.814428 | 1.55E-51 | -1.69E-46 |
| MS.gene059694 | MS.gene79875 | 0.802821 | 4.68E-49 | -1.69E-46 |
| MS.gene059697 | MS.gene79875 | 0.809793 | 1.59E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79875.t1 | MTR_3g083920 | 98.964 | 386 | 4 | 0 | 20 | 405 | 4 | 389 | 0.0 | 793 |
| MS.gene79875.t1 | MTR_3g083910 | 94.545 | 385 | 21 | 0 | 21 | 405 | 5 | 389 | 0.0 | 764 |
| MS.gene79875.t1 | MTR_5g007713 | 91.429 | 385 | 33 | 0 | 20 | 404 | 4 | 388 | 0.0 | 747 |
| MS.gene79875.t1 | MTR_5g007717 | 90.909 | 385 | 35 | 0 | 20 | 404 | 4 | 388 | 0.0 | 746 |
| MS.gene79875.t1 | MTR_1g098140 | 91.429 | 385 | 33 | 0 | 20 | 404 | 4 | 388 | 0.0 | 746 |
| MS.gene79875.t1 | MTR_7g016800 | 91.169 | 385 | 34 | 0 | 20 | 404 | 4 | 388 | 0.0 | 743 |
| MS.gene79875.t1 | MTR_1g097935 | 91.169 | 385 | 34 | 0 | 20 | 404 | 4 | 388 | 0.0 | 743 |
| MS.gene79875.t1 | MTR_1g097910 | 90.909 | 385 | 35 | 0 | 20 | 404 | 4 | 388 | 0.0 | 743 |
| MS.gene79875.t1 | MTR_7g016720 | 91.169 | 385 | 34 | 0 | 20 | 404 | 4 | 388 | 0.0 | 742 |
| MS.gene79875.t1 | MTR_7g016820 | 90.909 | 385 | 35 | 0 | 20 | 404 | 4 | 388 | 0.0 | 742 |
| MS.gene79875.t1 | MTR_7g016700 | 90.649 | 385 | 36 | 0 | 20 | 404 | 4 | 388 | 0.0 | 741 |
| MS.gene79875.t1 | MTR_5g007760 | 90.909 | 385 | 35 | 0 | 20 | 404 | 4 | 388 | 0.0 | 741 |
| MS.gene79875.t1 | MTR_5g007730 | 90.649 | 385 | 36 | 0 | 20 | 404 | 4 | 388 | 0.0 | 741 |
| MS.gene79875.t1 | MTR_7g016780 | 90.649 | 385 | 36 | 0 | 20 | 404 | 4 | 388 | 0.0 | 739 |
| MS.gene79875.t1 | MTR_3g086260 | 87.565 | 386 | 48 | 0 | 20 | 405 | 4 | 389 | 0.0 | 707 |
| MS.gene79875.t1 | MTR_2g058470 | 85.195 | 385 | 57 | 0 | 20 | 404 | 4 | 388 | 0.0 | 695 |
| MS.gene79875.t1 | MTR_7g084300 | 82.292 | 384 | 68 | 0 | 20 | 403 | 4 | 387 | 0.0 | 677 |
| MS.gene79875.t1 | MTR_3g088675 | 70.157 | 382 | 114 | 0 | 23 | 404 | 7 | 388 | 0.0 | 589 |
| MS.gene79875.t1 | MTR_7g113405 | 90.397 | 302 | 29 | 0 | 103 | 404 | 1 | 302 | 0.0 | 567 |
| MS.gene79875.t1 | MTR_5g007740 | 79.630 | 324 | 66 | 0 | 80 | 403 | 1 | 324 | 0.0 | 536 |
| MS.gene79875.t1 | MTR_5g007723 | 65.736 | 394 | 88 | 5 | 28 | 403 | 32 | 396 | 0.0 | 513 |
| MS.gene79875.t1 | MTR_5g007770 | 74.000 | 300 | 45 | 2 | 86 | 385 | 1 | 267 | 1.72e-160 | 452 |
| MS.gene79875.t1 | MTR_3g088670 | 47.949 | 390 | 189 | 6 | 26 | 404 | 2 | 388 | 2.47e-128 | 375 |
| MS.gene79875.t1 | MTR_4g075560 | 43.158 | 380 | 209 | 4 | 27 | 403 | 13 | 388 | 7.51e-105 | 315 |
| MS.gene79875.t1 | MTR_4g078730 | 38.606 | 373 | 222 | 2 | 31 | 403 | 24 | 389 | 7.90e-96 | 292 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene79875.t1 | AT5G13930 | 84.278 | 388 | 60 | 1 | 17 | 403 | 6 | 393 | 0.0 | 688 |
| MS.gene79875.t1 | AT4G34850 | 41.067 | 375 | 217 | 3 | 31 | 403 | 18 | 390 | 1.97e-98 | 299 |
| MS.gene79875.t1 | AT4G00040 | 41.114 | 377 | 212 | 5 | 30 | 403 | 16 | 385 | 2.13e-96 | 293 |
| MS.gene79875.t1 | AT1G02050 | 40.741 | 378 | 214 | 5 | 31 | 405 | 24 | 394 | 1.63e-90 | 279 |
| MS.gene79875.t1 | AT4G34850 | 41.509 | 318 | 183 | 2 | 88 | 403 | 1 | 317 | 4.44e-84 | 259 |
| MS.gene79875.t1 | AT3G52160 | 28.395 | 243 | 158 | 9 | 166 | 405 | 97 | 326 | 2.91e-13 | 70.9 |
| MS.gene79875.t1 | AT3G52160 | 28.631 | 241 | 156 | 9 | 166 | 403 | 210 | 437 | 9.89e-13 | 69.7 |
Find 100 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGATTACAATTCCATCTTT+TGG | 0.222422 | 3.1:+65638859 | MS.gene79875:CDS |
| GACCAAGTTGAACTCAAATT+AGG | 0.280063 | 3.1:+65638912 | MS.gene79875:CDS |
| AACAAAGGCTTCTCAACTTC+TGG | 0.283514 | 3.1:-65638669 | None:intergenic |
| CGACATGTACTTAGCGAATA+TGG | 0.292871 | 3.1:+65638963 | MS.gene79875:CDS |
| CTTGTGGGGCAGGCATTGTT+TGG | 0.310912 | 3.1:+65638606 | MS.gene79875:CDS |
| CAACAAAGGTGCTCGTGTTT+TGG | 0.312169 | 3.1:+65638521 | MS.gene79875:CDS |
| TCAATAGCCCCTTCACTATC+TGG | 0.313851 | 3.1:-65638723 | None:intergenic |
| TATCAGCTCACAAAGCTATT+AGG | 0.326867 | 3.1:+65638405 | MS.gene79875:CDS |
| AGCCTTTGTTTGAATTGGTT+TGG | 0.328022 | 3.1:+65638682 | MS.gene79875:CDS |
| TGAGAAGCCTTTGTTTGAAT+TGG | 0.342314 | 3.1:+65638677 | MS.gene79875:CDS |
| GCTTCGTTTGGCTAAAGATT+TGG | 0.342769 | 3.1:+65638491 | MS.gene79875:CDS |
| GGCCTTCAGCTCTCTGTGCC+TGG | 0.343152 | 3.1:-65637908 | None:intergenic |
| AACCGGGGAGGGACTTGAAT+GGG | 0.361675 | 3.1:+65639061 | MS.gene79875:CDS |
| CATCTCCTCAAGGATGTTCC+TGG | 0.370213 | 3.1:+65638777 | MS.gene79875:CDS |
| AACAGTCTCGATTGTGAGTC+CGG | 0.377576 | 3.1:-65639105 | None:intergenic |
| CCTGCCACTGTCTTTGCAAT+AGG | 0.391107 | 3.1:+65637930 | MS.gene79875:CDS |
| TCAACTTGGTCAAGAATTGC+TGG | 0.392629 | 3.1:-65638900 | None:intergenic |
| ATTGGATGCAAGACAGGATA+TGG | 0.394068 | 3.1:+65638251 | MS.gene79875:CDS |
| CAAGATGGACTTGCCACAAC+CGG | 0.394566 | 3.1:+65639044 | MS.gene79875:CDS |
| TCAAGAATTGCTGGTCCACC+TGG | 0.408988 | 3.1:-65638891 | None:intergenic |
| ACTCGTAAGAAATGTGGTTT+TGG | 0.412962 | 3.1:+65637476 | None:intergenic |
| TGAGTACATGGCACCTTCAT+TGG | 0.415295 | 3.1:+65638233 | MS.gene79875:CDS |
| TCTTGATAGTCTTGTGGGGC+AGG | 0.418345 | 3.1:+65638596 | MS.gene79875:CDS |
| AACAAAGGCTATCAAGGAAT+GGG | 0.424210 | 3.1:+65638311 | MS.gene79875:CDS |
| TGGTGGCACGGTGCTTCGTT+TGG | 0.426992 | 3.1:+65638479 | MS.gene79875:CDS |
| AGATGAGTAATCTTTGACTT+CGG | 0.435403 | 3.1:-65638339 | None:intergenic |
| TTCAAGTCCCTCCCCGGTTG+TGG | 0.437012 | 3.1:-65639057 | None:intergenic |
| ACTCATCTTGATAGTCTTGT+GGG | 0.449676 | 3.1:+65638591 | MS.gene79875:CDS |
| CCTATTGCAAAGACAGTGGC+AGG | 0.460571 | 3.1:-65637930 | None:intergenic |
| ACCTTCATTGGATGCAAGAC+AGG | 0.464180 | 3.1:+65638245 | MS.gene79875:CDS |
| GATAGTGAAGGGGCTATTGA+TGG | 0.464379 | 3.1:+65638726 | MS.gene79875:CDS |
| TGCGTGTGTGTTATTCATCT+TGG | 0.470585 | 3.1:+65638998 | MS.gene79875:CDS |
| ATTTCAGCCTTTGAATATCT+CGG | 0.471656 | 3.1:+65638839 | MS.gene79875:CDS |
| GGCTGCAACAAAGGCTATCA+AGG | 0.472973 | 3.1:+65638305 | MS.gene79875:CDS |
| TTGGTATGTGAGGCAGTCTT+CGG | 0.473157 | 3.1:+65637499 | MS.gene79875:CDS |
| GGGCAGGCATTGTTTGGAGA+TGG | 0.475842 | 3.1:+65638612 | MS.gene79875:CDS |
| ATCATATAACGCTTCACAGA+CGG | 0.478105 | 3.1:-65638435 | None:intergenic |
| ATGTTCTTTGAGACAAGGCC+AGG | 0.484686 | 3.1:-65638795 | None:intergenic |
| TACTCATCTTGATAGTCTTG+TGG | 0.487158 | 3.1:+65638590 | MS.gene79875:CDS |
| ATCACTGCAGTTACTTTCCG+TGG | 0.495969 | 3.1:+65638558 | MS.gene79875:CDS |
| CAACCGGGGAGGGACTTGAA+TGG | 0.499400 | 3.1:+65639060 | MS.gene79875:CDS |
| GGTGCAGCAGCTGTGATTGT+TGG | 0.502726 | 3.1:+65638633 | MS.gene79875:CDS |
| AGGAAAAGAGGCTGCAACAA+AGG | 0.503571 | 3.1:+65638296 | MS.gene79875:CDS |
| TCATATAACGCTTCACAGAC+GGG | 0.503757 | 3.1:-65638434 | None:intergenic |
| CAACAAAGGCTATCAAGGAA+TGG | 0.506508 | 3.1:+65638310 | MS.gene79875:CDS |
| TCCTGTCTTGCATCCAATGA+AGG | 0.510738 | 3.1:-65638246 | None:intergenic |
| GTGATACGGAAGTAAAAGTC+AGG | 0.511667 | 3.1:-65637993 | None:intergenic |
| CAGGAACATCCTTGAGGAGA+TGG | 0.526587 | 3.1:-65638776 | None:intergenic |
| AGCCTAATTTGAGTTCAACT+TGG | 0.530563 | 3.1:-65638914 | None:intergenic |
| GATGGTCACCTTCGAGAAGC+AGG | 0.531933 | 3.1:+65638744 | MS.gene79875:CDS |
| TGTGTTCACTGTTTGTGATA+CGG | 0.533500 | 3.1:-65638007 | None:intergenic |
| TCCTAGTTTATGTGAGTACA+TGG | 0.536509 | 3.1:+65638221 | MS.gene79875:CDS |
| ACCCCATTCAAGTCCCTCCC+CGG | 0.537173 | 3.1:-65639063 | None:intergenic |
| TGGGTGCGCGATCCAAAAGA+TGG | 0.539710 | 3.1:-65638871 | None:intergenic |
| GGCTTCTCAACTTCTGGCAA+CGG | 0.544110 | 3.1:-65638663 | None:intergenic |
| CGCCAGGCACAGAGAGCTGA+AGG | 0.545066 | 3.1:+65637906 | MS.gene79875:CDS |
| TATATATCTTACACATGCGC+TGG | 0.547544 | 3.1:-65638052 | None:intergenic |
| AGTACCAAAGCTAGGAAAAG+AGG | 0.551914 | 3.1:+65638284 | MS.gene79875:CDS |
| AAGATGGACTTGCCACAACC+GGG | 0.556253 | 3.1:+65639045 | MS.gene79875:CDS |
| AGGAGGAAATCAAAACAAGA+TGG | 0.563625 | 3.1:+65639029 | MS.gene79875:CDS |
| CTATCAAGATGAGTATCACT+AGG | 0.565719 | 3.1:-65638582 | None:intergenic |
| GGACTTGCCACAACCGGGGA+GGG | 0.566191 | 3.1:+65639050 | MS.gene79875:CDS |
| CATTGAGAAGGCTCTTGTTG+AGG | 0.569802 | 3.1:+65638815 | MS.gene79875:CDS |
| TCTCAATGTTCTTTGAGACA+AGG | 0.571904 | 3.1:-65638800 | None:intergenic |
| CAATCGTTCCAGATAGTGAA+GGG | 0.573996 | 3.1:+65638715 | MS.gene79875:CDS |
| TTTGACTGAAGAGATTCTGA+AGG | 0.575431 | 3.1:+65638194 | MS.gene79875:CDS |
| AAGACAGGATATGGTGGTTG+TGG | 0.581715 | 3.1:+65638260 | MS.gene79875:CDS |
| GTAAAATGTGAGGATTTAGG+TGG | 0.583137 | 3.1:-65639144 | None:intergenic |
| ACAGTCTCGATTGTGAGTCC+GGG | 0.593437 | 3.1:-65639104 | None:intergenic |
| GTCCAAACCAATTCAAACAA+AGG | 0.596458 | 3.1:-65638684 | None:intergenic |
| GACAGTGAATGAGATACGCC+AGG | 0.598521 | 3.1:+65637890 | MS.gene79875:intron |
| GTGAGCTGATAGTCAGCACC+AGG | 0.599126 | 3.1:-65638393 | None:intergenic |
| TTGTAATCCGAGATATTCAA+AGG | 0.602211 | 3.1:-65638846 | None:intergenic |
| AGGCATATCCACACCACTTG+TGG | 0.604163 | 3.1:-65638373 | None:intergenic |
| ACAAGTGGTGTGGATATGCC+TGG | 0.608099 | 3.1:+65638375 | MS.gene79875:CDS |
| ATGTCAGTCCTGCTTCTCGA+AGG | 0.612769 | 3.1:-65638752 | None:intergenic |
| ACTGACATTCCATCTCCTCA+AGG | 0.613763 | 3.1:+65638767 | MS.gene79875:CDS |
| GTTGTGGAAGTACCAAAGCT+AGG | 0.617435 | 3.1:+65638276 | MS.gene79875:CDS |
| ACAATCGTTCCAGATAGTGA+AGG | 0.620808 | 3.1:+65638714 | MS.gene79875:CDS |
| GGATTTAGGTGGACACACTA+CGG | 0.621942 | 3.1:-65639133 | None:intergenic |
| GCCATGTACTCACATAAACT+AGG | 0.622323 | 3.1:-65638222 | None:intergenic |
| TCATCTTGGATGAGATGAGG+AGG | 0.622546 | 3.1:+65639012 | MS.gene79875:CDS |
| TATTCATCTTGGATGAGATG+AGG | 0.624035 | 3.1:+65639009 | MS.gene79875:CDS |
| TGTCTCAAAGAACATTGAGA+AGG | 0.627187 | 3.1:+65638803 | MS.gene79875:CDS |
| ACCGGGGAGGGACTTGAATG+GGG | 0.631333 | 3.1:+65639062 | MS.gene79875:CDS |
| CAAGAATTGCTGGTCCACCT+GGG | 0.631788 | 3.1:-65638890 | None:intergenic |
| CTACACAGTCATGCGCAAGA+TGG | 0.639724 | 3.1:+65637523 | MS.gene79875:CDS |
| GATGAGTATCACTAGGTCCA+CGG | 0.642251 | 3.1:-65638575 | None:intergenic |
| CGTTATATGATGTATCAACA+AGG | 0.650243 | 3.1:+65638447 | MS.gene79875:CDS |
| CTCATCTTGATAGTCTTGTG+GGG | 0.651714 | 3.1:+65638592 | MS.gene79875:CDS |
| TTCGCTAAGTACATGTCGAG+TGG | 0.653182 | 3.1:-65638958 | None:intergenic |
| ACAAAGGCTATCAAGGAATG+GGG | 0.667647 | 3.1:+65638312 | MS.gene79875:CDS |
| TGGACTTGCCACAACCGGGG+AGG | 0.669015 | 3.1:+65639049 | MS.gene79875:CDS |
| CAAGGCCAGGAACATCCTTG+AGG | 0.680717 | 3.1:-65638782 | None:intergenic |
| GATTTGGCTGAAAACAACAA+AGG | 0.694413 | 3.1:+65638507 | MS.gene79875:CDS |
| AATCGTTCCAGATAGTGAAG+GGG | 0.700404 | 3.1:+65638716 | MS.gene79875:CDS |
| AGATGGACTTGCCACAACCG+GGG | 0.700869 | 3.1:+65639046 | MS.gene79875:CDS |
| CTATTGCAAAGACAGTGGCA+GGG | 0.708075 | 3.1:-65637929 | None:intergenic |
| AGTGCCTATTGCAAAGACAG+TGG | 0.727850 | 3.1:-65637934 | None:intergenic |
| GGATGCAAGACAGGATATGG+TGG | 0.728808 | 3.1:+65638254 | MS.gene79875:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTAAAAAAATGAGTT+AGG | - | chr3.1:65637564-65637583 | None:intergenic | 10.0% |
| !! | ACATAAAAGATATATAATAT+AGG | - | chr3.1:65638084-65638103 | None:intergenic | 10.0% |
| !! | AAATGAACTTAAGAAGAATT+TGG | - | chr3.1:65637841-65637860 | None:intergenic | 20.0% |
| !! | AATAATTAGTACTAATTAGC+CGG | + | chr3.1:65637683-65637702 | MS.gene79875:intron | 20.0% |
| !! | TTTATATTTCTTCATTGTGA+TGG | + | chr3.1:65637866-65637885 | MS.gene79875:intron | 20.0% |
| ! | TAAAAAAATGAGTTAGGTGA+GGG | - | chr3.1:65637558-65637577 | None:intergenic | 25.0% |
| ! | TAGTGTTACATTACAACATA+TGG | - | chr3.1:65637737-65637756 | None:intergenic | 25.0% |
| ! | TTAAAAAAATGAGTTAGGTG+AGG | - | chr3.1:65637559-65637578 | None:intergenic | 25.0% |
| ACATTACAACATATGGATGA+TGG | - | chr3.1:65637730-65637749 | None:intergenic | 30.0% | |
| ATTTCAGCCTTTGAATATCT+CGG | + | chr3.1:65638839-65638858 | MS.gene79875:CDS | 30.0% | |
| CGTTATATGATGTATCAACA+AGG | + | chr3.1:65638447-65638466 | MS.gene79875:CDS | 30.0% | |
| GAACTTAAGAAGAATTTGGT+TGG | - | chr3.1:65637837-65637856 | None:intergenic | 30.0% | |
| GGATCAAATAAGCATCATTA+TGG | - | chr3.1:65637709-65637728 | None:intergenic | 30.0% | |
| TTGTAATCCGAGATATTCAA+AGG | - | chr3.1:65638849-65638868 | None:intergenic | 30.0% | |
| ! | AGATGAGTAATCTTTGACTT+CGG | - | chr3.1:65638342-65638361 | None:intergenic | 30.0% |
| ! | TATGCTGTGTATGATTTTTC+AGG | + | chr3.1:65638138-65638157 | MS.gene79875:intron | 30.0% |
| AACAAAGGCTATCAAGGAAT+GGG | + | chr3.1:65638311-65638330 | MS.gene79875:CDS | 35.0% | |
| AGGAGGAAATCAAAACAAGA+TGG | + | chr3.1:65639029-65639048 | MS.gene79875:CDS | 35.0% | |
| ATCATATAACGCTTCACAGA+CGG | - | chr3.1:65638438-65638457 | None:intergenic | 35.0% | |
| CAAATAAGCATCATTATGGC+CGG | - | chr3.1:65637705-65637724 | None:intergenic | 35.0% | |
| CTATCAAGATGAGTATCACT+AGG | - | chr3.1:65638585-65638604 | None:intergenic | 35.0% | |
| GATTTGGCTGAAAACAACAA+AGG | + | chr3.1:65638507-65638526 | MS.gene79875:CDS | 35.0% | |
| GTCCAAACCAATTCAAACAA+AGG | - | chr3.1:65638687-65638706 | None:intergenic | 35.0% | |
| TATATATCTTACACATGCGC+TGG | - | chr3.1:65638055-65638074 | None:intergenic | 35.0% | |
| TATCAGCTCACAAAGCTATT+AGG | + | chr3.1:65638405-65638424 | MS.gene79875:CDS | 35.0% | |
| TATTCATCTTGGATGAGATG+AGG | + | chr3.1:65639009-65639028 | MS.gene79875:CDS | 35.0% | |
| TCCTAGTTTATGTGAGTACA+TGG | + | chr3.1:65638221-65638240 | MS.gene79875:CDS | 35.0% | |
| TGTCTCAAAGAACATTGAGA+AGG | + | chr3.1:65638803-65638822 | MS.gene79875:CDS | 35.0% | |
| TGTGTTCACTGTTTGTGATA+CGG | - | chr3.1:65638010-65638029 | None:intergenic | 35.0% | |
| TTCTGTGTGAGAAATGAGAA+TGG | - | chr3.1:65637605-65637624 | None:intergenic | 35.0% | |
| TTGTGTGAGAAAATGTTGTG+TGG | - | chr3.1:65637775-65637794 | None:intergenic | 35.0% | |
| TTTGACTGAAGAGATTCTGA+AGG | + | chr3.1:65638194-65638213 | MS.gene79875:CDS | 35.0% | |
| ! | AGCCTAATTTGAGTTCAACT+TGG | - | chr3.1:65638917-65638936 | None:intergenic | 35.0% |
| ! | AGCCTTTGTTTGAATTGGTT+TGG | + | chr3.1:65638682-65638701 | MS.gene79875:CDS | 35.0% |
| ! | CGGATTACAATTCCATCTTT+TGG | + | chr3.1:65638859-65638878 | MS.gene79875:CDS | 35.0% |
| ! | GACCAAGTTGAACTCAAATT+AGG | + | chr3.1:65638912-65638931 | MS.gene79875:CDS | 35.0% |
| ! | TACTCATCTTGATAGTCTTG+TGG | + | chr3.1:65638590-65638609 | MS.gene79875:CDS | 35.0% |
| ! | TGAGAAGCCTTTGTTTGAAT+TGG | + | chr3.1:65638677-65638696 | MS.gene79875:CDS | 35.0% |
| !! | ACTCATCTTGATAGTCTTGT+GGG | + | chr3.1:65638591-65638610 | MS.gene79875:CDS | 35.0% |
| !! | ATTTGGTTGGTAAGAGAAGA+AGG | - | chr3.1:65637824-65637843 | None:intergenic | 35.0% |
| !! | TATCAACAAGGTTGTTTTGC+TGG | + | chr3.1:65638459-65638478 | MS.gene79875:CDS | 35.0% |
| !! | TCTCAATGTTCTTTGAGACA+AGG | - | chr3.1:65638803-65638822 | None:intergenic | 35.0% |
| !!! | CTAATTTTTTGCACCACAAG+TGG | + | chr3.1:65638360-65638379 | MS.gene79875:CDS | 35.0% |
| AAAAATGAGTTAGGTGAGGG+AGG | - | chr3.1:65637555-65637574 | None:intergenic | 40.0% | |
| AACAAAGGCTTCTCAACTTC+TGG | - | chr3.1:65638672-65638691 | None:intergenic | 40.0% | |
| AATCGTTCCAGATAGTGAAG+GGG | + | chr3.1:65638716-65638735 | MS.gene79875:CDS | 40.0% | |
| ACAAAGGCTATCAAGGAATG+GGG | + | chr3.1:65638312-65638331 | MS.gene79875:CDS | 40.0% | |
| ACAATCGTTCCAGATAGTGA+AGG | + | chr3.1:65638714-65638733 | MS.gene79875:CDS | 40.0% | |
| AGTACCAAAGCTAGGAAAAG+AGG | + | chr3.1:65638284-65638303 | MS.gene79875:CDS | 40.0% | |
| ATTGGATGCAAGACAGGATA+TGG | + | chr3.1:65638251-65638270 | MS.gene79875:CDS | 40.0% | |
| CAACAAAGGCTATCAAGGAA+TGG | + | chr3.1:65638310-65638329 | MS.gene79875:CDS | 40.0% | |
| CAATCGTTCCAGATAGTGAA+GGG | + | chr3.1:65638715-65638734 | MS.gene79875:CDS | 40.0% | |
| CATTTCTCACACAGAACACT+AGG | + | chr3.1:65637609-65637628 | MS.gene79875:intron | 40.0% | |
| CGACATGTACTTAGCGAATA+TGG | + | chr3.1:65638963-65638982 | MS.gene79875:CDS | 40.0% | |
| GCCATGTACTCACATAAACT+AGG | - | chr3.1:65638225-65638244 | None:intergenic | 40.0% | |
| GCTTCGTTTGGCTAAAGATT+TGG | + | chr3.1:65638491-65638510 | MS.gene79875:CDS | 40.0% | |
| GTGATACGGAAGTAAAAGTC+AGG | - | chr3.1:65637996-65638015 | None:intergenic | 40.0% | |
| TCAACTTGGTCAAGAATTGC+TGG | - | chr3.1:65638903-65638922 | None:intergenic | 40.0% | |
| TCATATAACGCTTCACAGAC+GGG | - | chr3.1:65638437-65638456 | None:intergenic | 40.0% | |
| ! | CTCTGATCAACACAGTTTTG+AGG | - | chr3.1:65637966-65637985 | None:intergenic | 40.0% |
| ! | TGCGTGTGTGTTATTCATCT+TGG | + | chr3.1:65638998-65639017 | MS.gene79875:CDS | 40.0% |
| !! | CTCATCTTGATAGTCTTGTG+GGG | + | chr3.1:65638592-65638611 | MS.gene79875:CDS | 40.0% |
| !!! | TCGTGTTTTGGTGGTTTGTT+CGG | + | chr3.1:65638533-65638552 | MS.gene79875:CDS | 40.0% |
| AACAGTCTCGATTGTGAGTC+CGG | - | chr3.1:65639108-65639127 | None:intergenic | 45.0% | |
| AAGACAGGATATGGTGGTTG+TGG | + | chr3.1:65638260-65638279 | MS.gene79875:CDS | 45.0% | |
| ACCTTCATTGGATGCAAGAC+AGG | + | chr3.1:65638245-65638264 | MS.gene79875:CDS | 45.0% | |
| ACTGACATTCCATCTCCTCA+AGG | + | chr3.1:65638767-65638786 | MS.gene79875:CDS | 45.0% | |
| AGGAAAAGAGGCTGCAACAA+AGG | + | chr3.1:65638296-65638315 | MS.gene79875:CDS | 45.0% | |
| AGTGCCTATTGCAAAGACAG+TGG | - | chr3.1:65637937-65637956 | None:intergenic | 45.0% | |
| CATTGAGAAGGCTCTTGTTG+AGG | + | chr3.1:65638815-65638834 | MS.gene79875:CDS | 45.0% | |
| CTATTGCAAAGACAGTGGCA+GGG | - | chr3.1:65637932-65637951 | None:intergenic | 45.0% | |
| GATAGTGAAGGGGCTATTGA+TGG | + | chr3.1:65638726-65638745 | MS.gene79875:CDS | 45.0% | |
| GATGAGTATCACTAGGTCCA+CGG | - | chr3.1:65638578-65638597 | None:intergenic | 45.0% | |
| TCAATAGCCCCTTCACTATC+TGG | - | chr3.1:65638726-65638745 | None:intergenic | 45.0% | |
| TCATCTTGGATGAGATGAGG+AGG | + | chr3.1:65639012-65639031 | MS.gene79875:CDS | 45.0% | |
| TCCTGTCTTGCATCCAATGA+AGG | - | chr3.1:65638249-65638268 | None:intergenic | 45.0% | |
| TGAGTACATGGCACCTTCAT+TGG | + | chr3.1:65638233-65638252 | MS.gene79875:CDS | 45.0% | |
| TTCGCTAAGTACATGTCGAG+TGG | - | chr3.1:65638961-65638980 | None:intergenic | 45.0% | |
| TTGGTATGTGAGGCAGTCTT+CGG | + | chr3.1:65637499-65637518 | MS.gene79875:CDS | 45.0% | |
| ! | ATCACTGCAGTTACTTTCCG+TGG | + | chr3.1:65638558-65638577 | MS.gene79875:CDS | 45.0% |
| ! | CTTGAATGGGGTGTGCTTTT+CGG | + | chr3.1:65639074-65639093 | MS.gene79875:CDS | 45.0% |
| ! | TTTTTGCACCACAAGTGGTG+TGG | + | chr3.1:65638365-65638384 | MS.gene79875:CDS | 45.0% |
| !! | ATGTTCTTTGAGACAAGGCC+AGG | - | chr3.1:65638798-65638817 | None:intergenic | 45.0% |
| !! | CAACAAGGTTGTTTTGCTGG+TGG | + | chr3.1:65638462-65638481 | MS.gene79875:CDS | 45.0% |
| !! | GTTGTGGAAGTACCAAAGCT+AGG | + | chr3.1:65638276-65638295 | MS.gene79875:CDS | 45.0% |
| !!! | CAACAAAGGTGCTCGTGTTT+TGG | + | chr3.1:65638521-65638540 | MS.gene79875:CDS | 45.0% |
| !!! | GTGGTTTTGGTTGGTATGTG+AGG | + | chr3.1:65637489-65637508 | MS.gene79875:CDS | 45.0% |
| ACAAGTGGTGTGGATATGCC+TGG | + | chr3.1:65638375-65638394 | MS.gene79875:CDS | 50.0% | |
| ACAGTCTCGATTGTGAGTCC+GGG | - | chr3.1:65639107-65639126 | None:intergenic | 50.0% | |
| AGGCATATCCACACCACTTG+TGG | - | chr3.1:65638376-65638395 | None:intergenic | 50.0% | |
| ATGTCAGTCCTGCTTCTCGA+AGG | - | chr3.1:65638755-65638774 | None:intergenic | 50.0% | |
| CAAGAATTGCTGGTCCACCT+GGG | - | chr3.1:65638893-65638912 | None:intergenic | 50.0% | |
| CAGGAACATCCTTGAGGAGA+TGG | - | chr3.1:65638779-65638798 | None:intergenic | 50.0% | |
| CATCTCCTCAAGGATGTTCC+TGG | + | chr3.1:65638777-65638796 | MS.gene79875:CDS | 50.0% | |
| CCTATTGCAAAGACAGTGGC+AGG | - | chr3.1:65637933-65637952 | None:intergenic | 50.0% | |
| CCTGCCACTGTCTTTGCAAT+AGG | + | chr3.1:65637930-65637949 | MS.gene79875:CDS | 50.0% | |
| CTACACAGTCATGCGCAAGA+TGG | + | chr3.1:65637523-65637542 | MS.gene79875:CDS | 50.0% | |
| GACAGTGAATGAGATACGCC+AGG | + | chr3.1:65637890-65637909 | MS.gene79875:intron | 50.0% | |
| GGATGCAAGACAGGATATGG+TGG | + | chr3.1:65638254-65638273 | MS.gene79875:CDS | 50.0% | |
| GGCTGCAACAAAGGCTATCA+AGG | + | chr3.1:65638305-65638324 | MS.gene79875:CDS | 50.0% | |
| GGCTTCTCAACTTCTGGCAA+CGG | - | chr3.1:65638666-65638685 | None:intergenic | 50.0% | |
| TCAAGAATTGCTGGTCCACC+TGG | - | chr3.1:65638894-65638913 | None:intergenic | 50.0% | |
| ! | AAGATGGACTTGCCACAACC+GGG | + | chr3.1:65639045-65639064 | MS.gene79875:CDS | 50.0% |
| ! | CAAGATGGACTTGCCACAAC+CGG | + | chr3.1:65639044-65639063 | MS.gene79875:CDS | 50.0% |
| ! | GCAGCCTCTTTTCCTAGCTT+TGG | - | chr3.1:65638291-65638310 | None:intergenic | 50.0% |
| ! | TGGGGTGTGCTTTTCGGTTT+TGG | + | chr3.1:65639080-65639099 | MS.gene79875:CDS | 50.0% |
| !! | AGGTTGTTTTGCTGGTGGCA+CGG | + | chr3.1:65638467-65638486 | MS.gene79875:CDS | 50.0% |
| !! | CGAGTGGCTTGCATTTTCTC+TGG | - | chr3.1:65638945-65638964 | None:intergenic | 50.0% |
| !! | GTGCTTTTCGGTTTTGGTCC+CGG | + | chr3.1:65639086-65639105 | MS.gene79875:CDS | 50.0% |
| !! | TCTTGATAGTCTTGTGGGGC+AGG | + | chr3.1:65638596-65638615 | MS.gene79875:CDS | 50.0% |
| !!! | CAAAGGTGCTCGTGTTTTGG+TGG | + | chr3.1:65638524-65638543 | MS.gene79875:CDS | 50.0% |
| AACCGGGGAGGGACTTGAAT+GGG | + | chr3.1:65639061-65639080 | MS.gene79875:CDS | 55.0% | |
| CAAGGCCAGGAACATCCTTG+AGG | - | chr3.1:65638785-65638804 | None:intergenic | 55.0% | |
| GATGGTCACCTTCGAGAAGC+AGG | + | chr3.1:65638744-65638763 | MS.gene79875:CDS | 55.0% | |
| GGTGCAGCAGCTGTGATTGT+TGG | + | chr3.1:65638633-65638652 | MS.gene79875:CDS | 55.0% | |
| GTGAGCTGATAGTCAGCACC+AGG | - | chr3.1:65638396-65638415 | None:intergenic | 55.0% | |
| TGGGTGCGCGATCCAAAAGA+TGG | - | chr3.1:65638874-65638893 | None:intergenic | 55.0% | |
| ! | AGATGGACTTGCCACAACCG+GGG | + | chr3.1:65639046-65639065 | MS.gene79875:CDS | 55.0% |
| ! | ATCTTTTGGATCGCGCACCC+AGG | + | chr3.1:65638873-65638892 | MS.gene79875:CDS | 55.0% |
| ! | CTTGTGGGGCAGGCATTGTT+TGG | + | chr3.1:65638606-65638625 | MS.gene79875:CDS | 55.0% |
| ! | GGGCAGGCATTGTTTGGAGA+TGG | + | chr3.1:65638612-65638631 | MS.gene79875:CDS | 55.0% |
| ACCCCATTCAAGTCCCTCCC+CGG | - | chr3.1:65639066-65639085 | None:intergenic | 60.0% | |
| ACCGGGGAGGGACTTGAATG+GGG | + | chr3.1:65639062-65639081 | MS.gene79875:CDS | 60.0% | |
| CAACCGGGGAGGGACTTGAA+TGG | + | chr3.1:65639060-65639079 | MS.gene79875:CDS | 60.0% | |
| TGGTGGCACGGTGCTTCGTT+TGG | + | chr3.1:65638479-65638498 | MS.gene79875:CDS | 60.0% | |
| TTCAAGTCCCTCCCCGGTTG+TGG | - | chr3.1:65639060-65639079 | None:intergenic | 60.0% | |
| ! | TTTTGGATCGCGCACCCAGG+TGG | + | chr3.1:65638876-65638895 | MS.gene79875:CDS | 60.0% |
| CGCCAGGCACAGAGAGCTGA+AGG | + | chr3.1:65637906-65637925 | MS.gene79875:CDS | 65.0% | |
| GGACTTGCCACAACCGGGGA+GGG | + | chr3.1:65639050-65639069 | MS.gene79875:CDS | 65.0% | |
| GGCCTTCAGCTCTCTGTGCC+TGG | - | chr3.1:65637911-65637930 | None:intergenic | 65.0% | |
| TGGACTTGCCACAACCGGGG+AGG | + | chr3.1:65639049-65639068 | MS.gene79875:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 65637487 | 65639151 | 65637487 | ID=MS.gene79875 |
| chr3.1 | mRNA | 65637487 | 65639151 | 65637487 | ID=MS.gene79875.t1;Parent=MS.gene79875 |
| chr3.1 | exon | 65637487 | 65637544 | 65637487 | ID=MS.gene79875.t1.exon1;Parent=MS.gene79875.t1 |
| chr3.1 | CDS | 65637487 | 65637544 | 65637487 | ID=cds.MS.gene79875.t1;Parent=MS.gene79875.t1 |
| chr3.1 | exon | 65637895 | 65638062 | 65637895 | ID=MS.gene79875.t1.exon2;Parent=MS.gene79875.t1 |
| chr3.1 | CDS | 65637895 | 65638062 | 65637895 | ID=cds.MS.gene79875.t1;Parent=MS.gene79875.t1 |
| chr3.1 | exon | 65638160 | 65639151 | 65638160 | ID=MS.gene79875.t1.exon3;Parent=MS.gene79875.t1 |
| chr3.1 | CDS | 65638160 | 65639151 | 65638160 | ID=cds.MS.gene79875.t1;Parent=MS.gene79875.t1 |
| Gene Sequence |
| Protein sequence |
