AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene80045


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80045.t1 MTR_1g103690 98.154 325 6 0 1 325 1 325 0.0 635
MS.gene80045.t1 MTR_5g006340 94.154 325 19 0 1 325 1 325 0.0 571
MS.gene80045.t1 MTR_1g081610 87.963 324 39 0 1 324 1 324 0.0 533
MS.gene80045.t1 MTR_4g087490 71.384 318 91 0 8 325 47 364 6.42e-170 476
MS.gene80045.t1 MTR_1g081620 72.897 321 87 0 4 324 3 323 3.86e-165 462
MS.gene80045.t1 MTR_1g081625 73.438 320 85 0 5 324 4 323 1.26e-161 454
MS.gene80045.t1 MTR_4g087510 66.981 318 96 2 8 325 47 355 4.58e-157 443
MS.gene80045.t1 MTR_7g078070 62.025 316 120 0 6 321 59 374 1.22e-143 410
MS.gene80045.t1 MTR_7g078070 62.987 308 114 0 14 321 7 314 1.72e-141 402
MS.gene80045.t1 MTR_7g087110 62.857 315 107 1 7 321 64 368 4.22e-135 388
MS.gene80045.t1 MTR_4g087520 73.704 270 71 0 56 325 1 270 2.87e-133 380
MS.gene80045.t1 MTR_1g081640 69.965 283 85 0 3 285 2 284 1.09e-130 375
MS.gene80045.t1 MTR_7g078070 62.989 281 104 0 41 321 1 281 1.13e-128 369
MS.gene80045.t1 MTR_5g095670 29.745 353 189 6 12 307 48 398 7.07e-43 153
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene80045.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 513
MS.gene80045.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 513
MS.gene80045.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 513
MS.gene80045.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 513
MS.gene80045.t1 AT4G14880 81.818 319 58 0 6 324 3 321 0.0 513
MS.gene80045.t1 AT3G59760 74.843 318 80 0 7 324 112 429 1.58e-164 465
MS.gene80045.t1 AT3G59760 74.843 318 80 0 7 324 112 429 2.32e-164 465
MS.gene80045.t1 AT2G43750 74.845 322 81 0 3 324 70 391 6.69e-164 462
MS.gene80045.t1 AT2G43750 74.845 322 81 0 3 324 70 391 6.69e-164 462
MS.gene80045.t1 AT3G04940 68.827 324 101 0 1 324 1 324 6.16e-157 442
MS.gene80045.t1 AT3G04940 68.827 324 101 0 1 324 1 324 6.16e-157 442
MS.gene80045.t1 AT5G28020 71.651 321 91 0 4 324 3 323 1.30e-155 439
MS.gene80045.t1 AT5G28020 71.651 321 91 0 4 324 3 323 1.30e-155 439
MS.gene80045.t1 AT5G28020 71.651 321 91 0 4 324 3 323 1.30e-155 439
MS.gene80045.t1 AT5G28020 71.651 321 91 0 4 324 3 323 1.30e-155 439
MS.gene80045.t1 AT5G28020 71.651 321 91 0 4 324 3 323 1.30e-155 439
MS.gene80045.t1 AT3G59760 75.862 290 70 0 7 296 112 401 1.30e-149 427
MS.gene80045.t1 AT3G22460 77.407 270 41 1 56 325 1 250 1.42e-149 421
MS.gene80045.t1 AT5G28030 68.536 321 101 0 4 324 3 323 5.21e-146 414
MS.gene80045.t1 AT5G28030 68.536 321 101 0 4 324 3 323 5.21e-146 414
MS.gene80045.t1 AT5G28030 68.536 321 101 0 4 324 3 323 5.21e-146 414
MS.gene80045.t1 AT5G28030 68.536 321 101 0 4 324 3 323 5.21e-146 414
MS.gene80045.t1 AT3G61440 62.179 312 118 0 10 321 51 362 3.87e-136 391
MS.gene80045.t1 AT3G03630 61.562 320 113 1 4 323 95 404 2.67e-131 380
MS.gene80045.t1 AT3G61440 63.534 266 97 0 56 321 1 266 4.75e-118 341
MS.gene80045.t1 AT3G22460 85.635 181 26 0 8 188 8 188 6.10e-113 325
MS.gene80045.t1 AT5G28030 66.532 248 83 0 4 251 3 250 7.08e-112 325
MS.gene80045.t1 AT3G61440 60.687 262 103 0 10 271 51 312 9.77e-110 323
MS.gene80045.t1 AT3G61440 62.500 240 90 0 82 321 2 241 9.05e-104 304
MS.gene80045.t1 AT5G28020 70.042 237 71 0 88 324 1 237 1.15e-103 303
MS.gene80045.t1 AT1G55880 28.453 362 199 8 4 307 36 395 3.22e-39 143
MS.gene80045.t1 AT1G55880 30.417 240 125 4 12 210 44 282 1.12e-32 124

Find 94 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACAAATAGGCCTTCTTTA+AGG 0.110579 1.1:+74572158 None:intergenic
AGAACCATTCTTCTCTCTTT+TGG 0.169837 1.1:-74573248 MS.gene80045:CDS
GCCCCTTTCATTCCCTTTGC+AGG 0.215231 1.1:+74573203 None:intergenic
TGCTGCCAAACTGGAATTAA+TGG 0.244427 1.1:-74574006 MS.gene80045:CDS
ATTAAAGATAACCTTGATAT+TGG 0.251594 1.1:+74572882 None:intergenic
GATGCATTTGTTAGTGGTAT+AGG 0.279418 1.1:-74572955 MS.gene80045:CDS
GGGCATCGGATTGGCCTTCT+TGG 0.298899 1.1:-74573330 MS.gene80045:CDS
ACTCACTTCTGTAATATCTT+TGG 0.326873 1.1:+74574198 None:intergenic
TACAAATAGGCCTTCTTTAA+GGG 0.332733 1.1:+74572159 None:intergenic
TGCCACTTGTTGGCTCAATA+AGG 0.334733 1.1:+74573357 None:intergenic
ATGCATTTGTTAGTGGTATA+GGG 0.356996 1.1:-74572954 MS.gene80045:CDS
TTCAAATTGCTGAAGGATAT+AGG 0.362222 1.1:+74573139 None:intergenic
ATATTTCCCAACACCTGTTA+TGG 0.367102 1.1:+74572921 None:intergenic
AAACCACTGGTCCAGAGATA+TGG 0.372068 1.1:-74572999 MS.gene80045:CDS
TGCTCGAGTTGCTGCCAAAC+TGG 0.377214 1.1:-74574015 MS.gene80045:CDS
AAAGTTGATGCATTTGTTAG+TGG 0.411743 1.1:-74572961 MS.gene80045:CDS
TGCTGAAGGATATAGGCATT+TGG 0.414477 1.1:+74573146 None:intergenic
ATGCCCGTATTGCCACTTGT+TGG 0.417507 1.1:+74573347 None:intergenic
CCTGTGCCTTTCCATATCTC+TGG 0.417592 1.1:+74572988 None:intergenic
AATGATAAGCTTGTAGCCTT+TGG 0.418235 1.1:+74573301 None:intergenic
ATAGGTACCTTTGGATTGGC+AGG 0.419227 1.1:+74573113 None:intergenic
GGCTTTCCTCCGGACAGAAC+GGG 0.421175 1.1:+74572707 None:intergenic
GGGACTGGTGGTACCATAAC+AGG 0.426261 1.1:-74572934 MS.gene80045:CDS
CAGTTCATGGTTCAAAAGTC+AGG 0.435823 1.1:+74571693 None:intergenic
CTTTCAAGACTCATTGAAGC+AGG 0.439398 1.1:+74573272 None:intergenic
GACAGAACGGGACTTTCAAC+TGG 0.446402 1.1:+74572719 None:intergenic
GATATAGGCATTTGGAGTCT+TGG 0.449955 1.1:+74573154 None:intergenic
AAGCTTCTTGCCCTTAAAGA+AGG 0.457267 1.1:-74572169 MS.gene80045:CDS
AGAGCAGAATTCCAATATCA+AGG 0.465612 1.1:-74572893 MS.gene80045:intron
TGGTTCCATTAATTCCAGTT+TGG 0.469327 1.1:+74574001 None:intergenic
ATCCTCTGTGCTGTTTGAAT+CGG 0.472205 1.1:-74571735 MS.gene80045:CDS
TGAGCCAACAAGTGGCAATA+CGG 0.481402 1.1:-74573351 MS.gene80045:CDS
AAGATTCAAGGGATTGGTGC+TGG 0.484894 1.1:-74572580 MS.gene80045:CDS
GCCTTTGGCTGCTGCCAAGA+AGG 0.490662 1.1:+74573316 None:intergenic
GATTGCTGATGCAGAGGAGA+AGG 0.491875 1.1:-74573821 MS.gene80045:CDS
TGGAGCTGAGTTGGTTCTCA+CGG 0.494857 1.1:-74573228 MS.gene80045:CDS
AGGTACCTCTCACCAAAGCT+AGG 0.500820 1.1:+74571758 None:intergenic
CTAGGTCCACACAAGATTCA+AGG 0.500992 1.1:-74572592 MS.gene80045:intron
ACCATGGCAGTTGAAAGGTC+TGG 0.505654 1.1:-74574226 MS.gene80045:CDS
GATCCTGCAAAGGGAATGAA+AGG 0.508872 1.1:-74573206 MS.gene80045:CDS
GGGACTAATTACGCCTGGCC+AGG 0.509762 1.1:-74573800 MS.gene80045:intron
TGGCAATACGGGCATCGGAT+TGG 0.510586 1.1:-74573339 MS.gene80045:CDS
CCACACAAGATTCAAGGGAT+TGG 0.512912 1.1:-74572586 MS.gene80045:CDS
GCCTTCTTGGCAGCAGCCAA+AGG 0.516788 1.1:-74573317 MS.gene80045:CDS
TGCTGTTTGAATCGGTGAGA+CGG 0.517705 1.1:-74571727 MS.gene80045:CDS
TCCAGACCTTTCAACTGCCA+TGG 0.518086 1.1:+74574225 None:intergenic
TAACAAGTACCAACCTGGCC+AGG 0.519163 1.1:+74573787 None:intergenic
GTTGAAAGTCCCGTTCTGTC+CGG 0.521562 1.1:-74572716 MS.gene80045:CDS
GAGCCAACAAGTGGCAATAC+GGG 0.523351 1.1:-74573350 MS.gene80045:CDS
GTAGATAGGTACCTTTGGAT+TGG 0.525339 1.1:+74573109 None:intergenic
ACAAGTGGCAATACGGGCAT+CGG 0.529614 1.1:-74573344 MS.gene80045:CDS
GTGGTACCATAACAGGTGTT+GGG 0.539844 1.1:-74572927 MS.gene80045:CDS
TAACTAACCAGGCTTTCCTC+CGG 0.540478 1.1:+74572697 None:intergenic
TTTCCATATCTCTGGACCAG+TGG 0.541184 1.1:+74572996 None:intergenic
GCAAAACGACCAGAAAATGC+TGG 0.544487 1.1:-74571923 MS.gene80045:CDS
GTTCTGTCCGGAGGAAAGCC+TGG 0.548534 1.1:-74572704 MS.gene80045:intron
GGTGGTACCATAACAGGTGT+TGG 0.550475 1.1:-74572928 MS.gene80045:CDS
GTTCTCACGGATCCTGCAAA+GGG 0.558135 1.1:-74573215 MS.gene80045:CDS
GAGAAGGGACTAATTACGCC+TGG 0.562602 1.1:-74573805 MS.gene80045:CDS
GCTGTTTGAATCGGTGAGAC+GGG 0.567929 1.1:-74571726 MS.gene80045:CDS
CTGAAACCATGGCAGTTGAA+AGG 0.570234 1.1:-74574231 None:intergenic
GGTTCTCACGGATCCTGCAA+AGG 0.571382 1.1:-74573216 MS.gene80045:CDS
CATGCTCTAGTGTAAAAGAC+AGG 0.572827 1.1:-74573980 MS.gene80045:intron
TTTGTTAGTGGTATAGGGAC+TGG 0.573663 1.1:-74572949 MS.gene80045:CDS
TAGGTACCTTTGGATTGGCA+GGG 0.578890 1.1:+74573114 None:intergenic
TATCTTAATGGCAGCTGCCG+CGG 0.587252 1.1:+74571946 None:intergenic
TATTATGCAGCTGTATGGAG+TGG 0.587487 1.1:-74572744 MS.gene80045:intron
GTCCTTATTGAGCCAACAAG+TGG 0.589600 1.1:-74573359 MS.gene80045:CDS
CCAGAGATATGGAAAGGCAC+AGG 0.593497 1.1:-74572988 MS.gene80045:CDS
ATTCAAACAGCACAGAGGAT+AGG 0.595881 1.1:+74571738 None:intergenic
AGCTCCAAAAGAGAGAAGAA+TGG 0.598518 1.1:+74573244 None:intergenic
AGTATATCTGAATAAAATCA+CGG 0.598658 1.1:-74574048 MS.gene80045:CDS
TAGGTCCACACAAGATTCAA+GGG 0.605501 1.1:-74572591 MS.gene80045:CDS
GAGATATGGAAAGGCACAGG+AGG 0.606059 1.1:-74572985 MS.gene80045:CDS
AGGCTTTCCTCCGGACAGAA+CGG 0.607191 1.1:+74572706 None:intergenic
ATTGCTGATGCAGAGGAGAA+GGG 0.608166 1.1:-74573820 MS.gene80045:CDS
ATCCTGCAAAGGGAATGAAA+GGG 0.610783 1.1:-74573205 MS.gene80045:CDS
TAGTATGATTGCTGATGCAG+AGG 0.611040 1.1:-74573827 MS.gene80045:CDS
TGAAAACCCTGCCAATCCAA+AGG 0.621387 1.1:-74573120 MS.gene80045:intron
AATATCATCTGGAGCTGCCG+CGG 0.622299 1.1:-74571963 MS.gene80045:CDS
TATCTGAATAAAATCACGGA+TGG 0.622319 1.1:-74574044 MS.gene80045:CDS
AGACTAACATCCAATACCCC+GGG 0.624475 1.1:+74572550 None:intergenic
CCAATCCCTTGAATCTTGTG+TGG 0.626382 1.1:+74572586 None:intergenic
GGTACCTCTCACCAAAGCTA+GGG 0.626738 1.1:+74571759 None:intergenic
CAGGTGCATTATGAAACCAC+TGG 0.627492 1.1:-74573012 MS.gene80045:CDS
AAGACTAACATCCAATACCC+CGG 0.628506 1.1:+74572549 None:intergenic
TCCTGCAAAGGGAATGAAAG+GGG 0.649085 1.1:-74573204 MS.gene80045:CDS
GTTAGTGGTATAGGGACTGG+TGG 0.649614 1.1:-74572946 MS.gene80045:CDS
AGATATGGAAAGGCACAGGA+GGG 0.656003 1.1:-74572984 MS.gene80045:CDS
ACTGGTCCAGAGATATGGAA+AGG 0.666229 1.1:-74572994 MS.gene80045:CDS
GAAAGTCCCGTTCTGTCCGG+AGG 0.669763 1.1:-74572713 MS.gene80045:CDS
GTTTGAATCGGTGAGACGGG+AGG 0.688551 1.1:-74571723 MS.gene80045:CDS
TTTATTCAGATATACTAACG+GGG 0.743072 1.1:+74574055 None:intergenic
CACCGATTCAAACAGCACAG+AGG 0.761759 1.1:+74571733 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAAAATGAAACAAAA+CGG + chr1.1:74573159-74573178 None:intergenic 10.0%
!!! ATAAAAATATTTTGAATATC+TGG - chr1.1:74574062-74574081 MS.gene80045:CDS 10.0%
!! ATTTATAACATAAATTGCAA+AGG + chr1.1:74572060-74572079 None:intergenic 15.0%
!! TATAAAAAATGAAACAAAAC+GGG + chr1.1:74573158-74573177 None:intergenic 15.0%
!!! ATTTTATTCAGATATACTAA+CGG + chr1.1:74571870-74571889 None:intergenic 15.0%
!! AGTATATCTGAATAAAATCA+CGG - chr1.1:74571872-74571891 MS.gene80045:intron 20.0%
!! ATTAAAGATAACCTTGATAT+TGG + chr1.1:74573041-74573060 None:intergenic 20.0%
!! CAACTATACAAAATAAACAA+CGG + chr1.1:74571835-74571854 None:intergenic 20.0%
!! GCAATTTATGTTATAAATGT+AGG - chr1.1:74572062-74572081 MS.gene80045:intron 20.0%
!! TAAAACAATATTCATAGTAG+AGG + chr1.1:74573931-74573950 None:intergenic 20.0%
!! TAATTAAATGTTTCTTACTG+TGG - chr1.1:74571794-74571813 MS.gene80045:intron 20.0%
!! TGTTAAATTATTTGAGAGAA+TGG + chr1.1:74573484-74573503 None:intergenic 20.0%
!! TTATGTTATAAATGTAGGAT+TGG - chr1.1:74572067-74572086 MS.gene80045:intron 20.0%
!!! ATGTGAATGTAATTTTTAGA+AGG - chr1.1:74573607-74573626 MS.gene80045:intron 20.0%
!!! CTTGTATATTATTTGAGTTT+TGG - chr1.1:74571983-74572002 MS.gene80045:intron 20.0%
!!! GTTTATTTTGTATAGTTGAT+CGG - chr1.1:74571837-74571856 MS.gene80045:intron 20.0%
!!! TCATTATTTTGCCATTTTTT+TGG - chr1.1:74573642-74573661 MS.gene80045:intron 20.0%
!!! TCTACTATGAATATTGTTTT+AGG - chr1.1:74573930-74573949 MS.gene80045:intron 20.0%
!!! TGACAATTTTCAATATGATA+TGG - chr1.1:74574125-74574144 MS.gene80045:intron 20.0%
!!! TTTTATTCAGATATACTAAC+GGG + chr1.1:74571869-74571888 None:intergenic 20.0%
! AGATTAAAATGAAAGTTCGT+AGG - chr1.1:74572157-74572176 MS.gene80045:intron 25.0%
! ATTGTAGATTTCTTAAATCC+TGG - chr1.1:74573536-74573555 MS.gene80045:intron 25.0%
! GAGAAATACTAGTACTAATT+TGG - chr1.1:74572304-74572323 MS.gene80045:intron 25.0%
! GGATTTAAGAAATCTACAAT+TGG + chr1.1:74573536-74573555 None:intergenic 25.0%
! GGTATGTTATAGGAAAAAAA+GGG - chr1.1:74574092-74574111 MS.gene80045:intron 25.0%
! TACAAAAGATTGTGAAATAG+CGG + chr1.1:74572414-74572433 None:intergenic 25.0%
! TGAATACTAGGAAATATGAT+AGG - chr1.1:74572278-74572297 MS.gene80045:intron 25.0%
! TGGTATGTTATAGGAAAAAA+AGG - chr1.1:74574091-74574110 MS.gene80045:intron 25.0%
! TTTATTCAGATATACTAACG+GGG + chr1.1:74571868-74571887 None:intergenic 25.0%
!! AAGTTCTTATTTCAACTGTA+AGG + chr1.1:74573264-74573283 None:intergenic 25.0%
!! CAACTTTTATGTTGAATACT+AGG - chr1.1:74572266-74572285 MS.gene80045:intron 25.0%
!! TTTTATATTATGCAGCTGTA+TGG - chr1.1:74573171-74573190 MS.gene80045:CDS 25.0%
!!! AATTTTTAGAAGGATGATGA+TGG - chr1.1:74573617-74573636 MS.gene80045:intron 25.0%
!!! CTATGAATATTGTTTTAGGT+TGG - chr1.1:74573934-74573953 MS.gene80045:intron 25.0%
AAAATGAAAGTTCGTAGGAT+TGG - chr1.1:74572162-74572181 MS.gene80045:CDS 30.0%
AAACAGTGTTATAACTAACC+AGG + chr1.1:74573237-74573256 None:intergenic 30.0%
ACAAAATAGATAGCTCTTAG+AGG + chr1.1:74573831-74573850 None:intergenic 30.0%
ACTCACTTCTGTAATATCTT+TGG + chr1.1:74571725-74571744 None:intergenic 30.0%
ACTCATTTGTTCTACAACTT+TGG - chr1.1:74572832-74572851 MS.gene80045:intron 30.0%
AGAGGTTTAGACTTACAAAT+AGG + chr1.1:74573777-74573796 None:intergenic 30.0%
AGATGAATAAGTGCAAGATT+TGG - chr1.1:74573086-74573105 MS.gene80045:intron 30.0%
AGTGTTATCACAGAAAATAG+TGG - chr1.1:74572352-74572371 MS.gene80045:intron 30.0%
ATAAATACCAGTGATCAGTT+TGG + chr1.1:74572514-74572533 None:intergenic 30.0%
ATCTGTCAAATCACACAATA+AGG + chr1.1:74573703-74573722 None:intergenic 30.0%
ATGAAACAAAACGGGAAATT+AGG + chr1.1:74573150-74573169 None:intergenic 30.0%
ATTTGCCATGATAAATGTCT+AGG - chr1.1:74573310-74573329 MS.gene80045:CDS 30.0%
CAAAATAAACAACGGACATT+AGG + chr1.1:74571827-74571846 None:intergenic 30.0%
GAAATGATTACTGTTGTACT+TGG - chr1.1:74573891-74573910 MS.gene80045:intron 30.0%
GTTATCATCGTTGTATTTAC+AGG - chr1.1:74572889-74572908 MS.gene80045:intron 30.0%
GTTTCTTAGTTCATTATCAC+TGG - chr1.1:74572328-74572347 MS.gene80045:intron 30.0%
TACAAATAGGCCTTCTTTAA+GGG + chr1.1:74573764-74573783 None:intergenic 30.0%
TAGAAAATCCAACACAATTG+AGG - chr1.1:74573797-74573816 MS.gene80045:intron 30.0%
TATCTGAATAAAATCACGGA+TGG - chr1.1:74571876-74571895 MS.gene80045:intron 30.0%
TATTTAACCAAACTGATCAC+TGG - chr1.1:74572504-74572523 MS.gene80045:intron 30.0%
TGTAGAACAAATGAGTAGAT+AGG + chr1.1:74572828-74572847 None:intergenic 30.0%
TTAACGATGTATAGTTCATC+TGG + chr1.1:74572232-74572251 None:intergenic 30.0%
TTACAAATAGGCCTTCTTTA+AGG + chr1.1:74573765-74573784 None:intergenic 30.0%
TTCAAATTGCTGAAGGATAT+AGG + chr1.1:74572784-74572803 None:intergenic 30.0%
TTGTACTAAATAGTGCATCA+CGG - chr1.1:74572429-74572448 MS.gene80045:intron 30.0%
! ATGCATTTGTTAGTGGTATA+GGG - chr1.1:74572966-74572985 MS.gene80045:CDS 30.0%
! ATTGTGTTGGATTTTCTAAG+AGG + chr1.1:74573795-74573814 None:intergenic 30.0%
! TCTACAACTTTGGTAGTTAA+TGG - chr1.1:74572842-74572861 MS.gene80045:intron 30.0%
! TTTTCAATATGATATGGTGC+AGG - chr1.1:74574131-74574150 MS.gene80045:intron 30.0%
!! AAAGTTGATGCATTTGTTAG+TGG - chr1.1:74572959-74572978 MS.gene80045:CDS 30.0%
!! TATTTGAGAGAATGGTTTTG+TGG + chr1.1:74573476-74573495 None:intergenic 30.0%
!! TTTATTACTGGCTTCCTAAA+AGG - chr1.1:74573439-74573458 MS.gene80045:intron 30.0%
!!! GCTGCTTTAGTTTTTATTAC+TGG - chr1.1:74573427-74573446 MS.gene80045:intron 30.0%
!!! TTTTAGGTTGGAATATCATC+TGG - chr1.1:74573946-74573965 MS.gene80045:intron 30.0%
AATGAGTAGATAGGTACCTT+TGG + chr1.1:74572819-74572838 None:intergenic 35.0%
AATGATAAGCTTGTAGCCTT+TGG + chr1.1:74572622-74572641 None:intergenic 35.0%
AGAGCAGAATTCCAATATCA+AGG - chr1.1:74573027-74573046 MS.gene80045:intron 35.0%
ATAAAAACTAAAGCAGCACC+TGG + chr1.1:74573424-74573443 None:intergenic 35.0%
ATATTTCCCAACACCTGTTA+TGG + chr1.1:74573002-74573021 None:intergenic 35.0%
ATCTTTAACAAGTACCAACC+TGG + chr1.1:74572141-74572160 None:intergenic 35.0%
CACATGATAAGTGTGTATTG+TGG + chr1.1:74573592-74573611 None:intergenic 35.0%
CTCACAGATGTCCAAAAAAA+TGG + chr1.1:74573656-74573675 None:intergenic 35.0%
GGTATTTATGTTGTTGCATG+CGG - chr1.1:74572525-74572544 MS.gene80045:intron 35.0%
TAAAAACTAAAGCAGCACCT+GGG + chr1.1:74573423-74573442 None:intergenic 35.0%
TAGTTAATGGTTGGCAACTT+TGG - chr1.1:74572855-74572874 MS.gene80045:intron 35.0%
TATTCATCTTAGTGTTGTCG+AGG + chr1.1:74573075-74573094 None:intergenic 35.0%
TGCGTAAGATTTAGTAAACC+AGG + chr1.1:74573557-74573576 None:intergenic 35.0%
TGGTTCCATTAATTCCAGTT+TGG + chr1.1:74571922-74571941 None:intergenic 35.0%
! AGAACCATTCTTCTCTCTTT+TGG - chr1.1:74572672-74572691 MS.gene80045:intron 35.0%
! ATAAGCTTTCCAGCATTTTC+TGG + chr1.1:74574009-74574028 None:intergenic 35.0%
! CAACTTTGGTAGTTAATGGT+TGG - chr1.1:74572846-74572865 MS.gene80045:intron 35.0%
! CGAGCAACATTCTTTTGAAT+TGG - chr1.1:74572018-74572037 MS.gene80045:intron 35.0%
! GATGCATTTGTTAGTGGTAT+AGG - chr1.1:74572965-74572984 MS.gene80045:CDS 35.0%
! TTTTGAATATCTGGCACAGT+TGG - chr1.1:74574071-74574090 MS.gene80045:CDS 35.0%
!! TGGTCGTTTTGCTATCTTAA+TGG + chr1.1:74573989-74574008 None:intergenic 35.0%
!!! AGAGAATGGTTTTGTGGTAA+GGG + chr1.1:74573470-74573489 None:intergenic 35.0%
AAAAACTAAAGCAGCACCTG+GGG + chr1.1:74573422-74573441 None:intergenic 40.0%
AAGACTAACATCCAATACCC+CGG + chr1.1:74573374-74573393 None:intergenic 40.0%
AAGCTTCTTGCCCTTAAAGA+AGG - chr1.1:74573751-74573770 MS.gene80045:intron 40.0%
AGCTCCAAAAGAGAGAAGAA+TGG + chr1.1:74572679-74572698 None:intergenic 40.0%
ATCCTGCAAAGGGAATGAAA+GGG - chr1.1:74572715-74572734 MS.gene80045:CDS 40.0%
ATTCAAACAGCACAGAGGAT+AGG + chr1.1:74574185-74574204 None:intergenic 40.0%
CAGAATAGCCTCAATTGTGT+TGG + chr1.1:74573808-74573827 None:intergenic 40.0%
CATGCTCTAGTGTAAAAGAC+AGG - chr1.1:74571940-74571959 MS.gene80045:CDS 40.0%
CTTTCAAGACTCATTGAAGC+AGG + chr1.1:74572651-74572670 None:intergenic 40.0%
GCTATAACACTGTTGCATAG+CGG + chr1.1:74572390-74572409 None:intergenic 40.0%
GTAATTCAAGTAAGTTCCCC+AGG - chr1.1:74573403-74573422 MS.gene80045:intron 40.0%
GTAGATAGGTACCTTTGGAT+TGG + chr1.1:74572814-74572833 None:intergenic 40.0%
GTGGACCTAGACATTTATCA+TGG + chr1.1:74573318-74573337 None:intergenic 40.0%
TAGGTCCACACAAGATTCAA+GGG - chr1.1:74573329-74573348 MS.gene80045:CDS 40.0%
TAGTATGATTGCTGATGCAG+AGG - chr1.1:74572093-74572112 MS.gene80045:intron 40.0%
TATTATGCAGCTGTATGGAG+TGG - chr1.1:74573176-74573195 MS.gene80045:CDS 40.0%
TGCTGAAGGATATAGGCATT+TGG + chr1.1:74572777-74572796 None:intergenic 40.0%
TGCTGCCAAACTGGAATTAA+TGG - chr1.1:74571914-74571933 MS.gene80045:CDS 40.0%
TTTGTTAGTGGTATAGGGAC+TGG - chr1.1:74572971-74572990 MS.gene80045:CDS 40.0%
! CAGGGTTTTCAAATTGCTGA+AGG + chr1.1:74572791-74572810 None:intergenic 40.0%
! CTGTCTTTTACACTAGAGCA+TGG + chr1.1:74571942-74571961 None:intergenic 40.0%
! GATATAGGCATTTGGAGTCT+TGG + chr1.1:74572769-74572788 None:intergenic 40.0%
! TGGCACAGTTGGTATGTTAT+AGG - chr1.1:74574082-74574101 MS.gene80045:intron 40.0%
!! ATCCTCTGTGCTGTTTGAAT+CGG - chr1.1:74574185-74574204 MS.gene80045:intron 40.0%
!! TGGTAAGGGTTTAGCCTTTT+AGG + chr1.1:74573456-74573475 None:intergenic 40.0%
!!! GAGAGAATGGTTTTGTGGTA+AGG + chr1.1:74573471-74573490 None:intergenic 40.0%
AAACCACTGGTCCAGAGATA+TGG - chr1.1:74572921-74572940 MS.gene80045:CDS 45.0%
ACGGGAAATTAGGAGTAGAG+AGG + chr1.1:74573140-74573159 None:intergenic 45.0%
ACTGGTCCAGAGATATGGAA+AGG - chr1.1:74572926-74572945 MS.gene80045:CDS 45.0%
AGACTAACATCCAATACCCC+GGG + chr1.1:74573373-74573392 None:intergenic 45.0%
ATAGCAGCGCTATTGCTTAG+CGG + chr1.1:74572478-74572497 None:intergenic 45.0%
ATTGCTGATGCAGAGGAGAA+GGG - chr1.1:74572100-74572119 MS.gene80045:intron 45.0%
CAGGTGCATTATGAAACCAC+TGG - chr1.1:74572908-74572927 MS.gene80045:CDS 45.0%
CCAATCCCTTGAATCTTGTG+TGG + chr1.1:74573337-74573356 None:intergenic 45.0%
CCACACAAGATTCAAGGGAT+TGG - chr1.1:74573334-74573353 MS.gene80045:CDS 45.0%
CTAGGTCCACACAAGATTCA+AGG - chr1.1:74573328-74573347 MS.gene80045:CDS 45.0%
GATCCTGCAAAGGGAATGAA+AGG - chr1.1:74572714-74572733 MS.gene80045:CDS 45.0%
GCAAAACGACCAGAAAATGC+TGG - chr1.1:74573997-74574016 MS.gene80045:CDS 45.0%
GTCCTTATTGAGCCAACAAG+TGG - chr1.1:74572561-74572580 MS.gene80045:CDS 45.0%
GTGGTACCATAACAGGTGTT+GGG - chr1.1:74572993-74573012 MS.gene80045:CDS 45.0%
TAACTAACCAGGCTTTCCTC+CGG + chr1.1:74573226-74573245 None:intergenic 45.0%
TCCTGCAAAGGGAATGAAAG+GGG - chr1.1:74572716-74572735 MS.gene80045:CDS 45.0%
TGAAAACCCTGCCAATCCAA+AGG - chr1.1:74572800-74572819 MS.gene80045:intron 45.0%
TGAGCCAACAAGTGGCAATA+CGG - chr1.1:74572569-74572588 MS.gene80045:CDS 45.0%
TTTCCATATCTCTGGACCAG+TGG + chr1.1:74572927-74572946 None:intergenic 45.0%
! AAGATTCAAGGGATTGGTGC+TGG - chr1.1:74573340-74573359 MS.gene80045:CDS 45.0%
! AGATATGGAAAGGCACAGGA+GGG - chr1.1:74572936-74572955 MS.gene80045:CDS 45.0%
! TGCTGTTTGAATCGGTGAGA+CGG - chr1.1:74574193-74574212 MS.gene80045:intron 45.0%
!! ATAGGTACCTTTGGATTGGC+AGG + chr1.1:74572810-74572829 None:intergenic 45.0%
!! CAGGTTGTTTTCCCTAGCTT+TGG - chr1.1:74574150-74574169 MS.gene80045:intron 45.0%
!! TAGGTACCTTTGGATTGGCA+GGG + chr1.1:74572809-74572828 None:intergenic 45.0%
!! TGCCACTTGTTGGCTCAATA+AGG + chr1.1:74572566-74572585 None:intergenic 45.0%
!!! ATTGGTGCTGGTTTTGTTCC+CGG - chr1.1:74573352-74573371 MS.gene80045:CDS 45.0%
!!! TCTCTCTTTTGGAGCTGAGT+TGG - chr1.1:74572683-74572702 MS.gene80045:intron 45.0%
!!! TTTTCCCTAGCTTTGGTGAG+AGG - chr1.1:74574157-74574176 MS.gene80045:intron 45.0%
!!! TATTTTTATCAAAATTTTTA+TGG + chr1.1:74574051-74574070 None:intergenic 5.0%
ACAAGTGGCAATACGGGCAT+CGG - chr1.1:74572576-74572595 MS.gene80045:CDS 50.0%
AGGTACCTCTCACCAAAGCT+AGG + chr1.1:74574165-74574184 None:intergenic 50.0%
CCTGTGCCTTTCCATATCTC+TGG + chr1.1:74572935-74572954 None:intergenic 50.0%
GACAGAACGGGACTTTCAAC+TGG + chr1.1:74573204-74573223 None:intergenic 50.0%
GAGAAGGGACTAATTACGCC+TGG - chr1.1:74572115-74572134 MS.gene80045:intron 50.0%
GAGCCAACAAGTGGCAATAC+GGG - chr1.1:74572570-74572589 MS.gene80045:CDS 50.0%
GATTGCTGATGCAGAGGAGA+AGG - chr1.1:74572099-74572118 MS.gene80045:intron 50.0%
GCTGTTTGAATCGGTGAGAC+GGG - chr1.1:74574194-74574213 MS.gene80045:intron 50.0%
GGTACCTCTCACCAAAGCTA+GGG + chr1.1:74574164-74574183 None:intergenic 50.0%
GGTGGTACCATAACAGGTGT+TGG - chr1.1:74572992-74573011 MS.gene80045:CDS 50.0%
GTTAGTGGTATAGGGACTGG+TGG - chr1.1:74572974-74572993 MS.gene80045:CDS 50.0%
GTTCTCACGGATCCTGCAAA+GGG - chr1.1:74572705-74572724 MS.gene80045:CDS 50.0%
GTTGAAAGTCCCGTTCTGTC+CGG - chr1.1:74573204-74573223 MS.gene80045:CDS 50.0%
TAACAAGTACCAACCTGGCC+AGG + chr1.1:74572136-74572155 None:intergenic 50.0%
TATCTTAATGGCAGCTGCCG+CGG + chr1.1:74573977-74573996 None:intergenic 50.0%
! AATATCATCTGGAGCTGCCG+CGG - chr1.1:74573957-74573976 MS.gene80045:intron 50.0%
! ATGCCCGTATTGCCACTTGT+TGG + chr1.1:74572576-74572595 None:intergenic 50.0%
! CCAGAGATATGGAAAGGCAC+AGG - chr1.1:74572932-74572951 MS.gene80045:CDS 50.0%
! GAGATATGGAAAGGCACAGG+AGG - chr1.1:74572935-74572954 MS.gene80045:CDS 50.0%
!! CACCGATTCAAACAGCACAG+AGG + chr1.1:74574190-74574209 None:intergenic 50.0%
!! TGGAGCTGAGTTGGTTCTCA+CGG - chr1.1:74572692-74572711 MS.gene80045:intron 50.0%
!!! TGGTTTTGTTCCCGGGGTAT+TGG - chr1.1:74573360-74573379 MS.gene80045:CDS 50.0%
!!! TTGGTGCTGGTTTTGTTCCC+GGG - chr1.1:74573353-74573372 MS.gene80045:CDS 50.0%
AGGCTTTCCTCCGGACAGAA+CGG + chr1.1:74573217-74573236 None:intergenic 55.0%
CTAATTACGCCTGGCCAGGT+TGG - chr1.1:74572124-74572143 MS.gene80045:intron 55.0%
GCCCCTTTCATTCCCTTTGC+AGG + chr1.1:74572720-74572739 None:intergenic 55.0%
GGTTCTCACGGATCCTGCAA+AGG - chr1.1:74572704-74572723 MS.gene80045:intron 55.0%
GTTTGAATCGGTGAGACGGG+AGG - chr1.1:74574197-74574216 MS.gene80045:intron 55.0%
! GGGACTGGTGGTACCATAAC+AGG - chr1.1:74572986-74573005 MS.gene80045:CDS 55.0%
! TGCTCGAGTTGCTGCCAAAC+TGG - chr1.1:74571905-74571924 MS.gene80045:intron 55.0%
!! TGGCAATACGGGCATCGGAT+TGG - chr1.1:74572581-74572600 MS.gene80045:CDS 55.0%
!!! TGGTGCTGGTTTTGTTCCCG+GGG - chr1.1:74573354-74573373 MS.gene80045:CDS 55.0%
GAAAGTCCCGTTCTGTCCGG+AGG - chr1.1:74573207-74573226 MS.gene80045:CDS 60.0%
GCCTTCTTGGCAGCAGCCAA+AGG - chr1.1:74572603-74572622 MS.gene80045:intron 60.0%
GCCTTTGGCTGCTGCCAAGA+AGG + chr1.1:74572607-74572626 None:intergenic 60.0%
GGCTTTCCTCCGGACAGAAC+GGG + chr1.1:74573216-74573235 None:intergenic 60.0%
GGGACTAATTACGCCTGGCC+AGG - chr1.1:74572120-74572139 MS.gene80045:intron 60.0%
GTTCTGTCCGGAGGAAAGCC+TGG - chr1.1:74573216-74573235 MS.gene80045:CDS 60.0%
!! GGGCATCGGATTGGCCTTCT+TGG - chr1.1:74572590-74572609 MS.gene80045:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 74571697 74574245 74571697 ID=MS.gene80045
chr1.1 mRNA 74571697 74574245 74571697 ID=MS.gene80045.t1;Parent=MS.gene80045
chr1.1 exon 74574204 74574245 74574204 ID=MS.gene80045.t1.exon1;Parent=MS.gene80045.t1
chr1.1 CDS 74574204 74574245 74574204 ID=cds.MS.gene80045.t1;Parent=MS.gene80045.t1
chr1.1 exon 74573981 74574090 74573981 ID=MS.gene80045.t1.exon2;Parent=MS.gene80045.t1
chr1.1 CDS 74573981 74574090 74573981 ID=cds.MS.gene80045.t1;Parent=MS.gene80045.t1
chr1.1 exon 74573801 74573858 74573801 ID=MS.gene80045.t1.exon3;Parent=MS.gene80045.t1
chr1.1 CDS 74573801 74573858 74573801 ID=cds.MS.gene80045.t1;Parent=MS.gene80045.t1
chr1.1 exon 74573121 74573384 74573121 ID=MS.gene80045.t1.exon4;Parent=MS.gene80045.t1
chr1.1 CDS 74573121 74573384 74573121 ID=cds.MS.gene80045.t1;Parent=MS.gene80045.t1
chr1.1 exon 74572894 74573031 74572894 ID=MS.gene80045.t1.exon5;Parent=MS.gene80045.t1
chr1.1 CDS 74572894 74573031 74572894 ID=cds.MS.gene80045.t1;Parent=MS.gene80045.t1
chr1.1 exon 74572705 74572756 74572705 ID=MS.gene80045.t1.exon6;Parent=MS.gene80045.t1
chr1.1 CDS 74572705 74572756 74572705 ID=cds.MS.gene80045.t1;Parent=MS.gene80045.t1
chr1.1 exon 74572531 74572610 74572531 ID=MS.gene80045.t1.exon7;Parent=MS.gene80045.t1
chr1.1 CDS 74572531 74572610 74572531 ID=cds.MS.gene80045.t1;Parent=MS.gene80045.t1
chr1.1 exon 74572162 74572221 74572162 ID=MS.gene80045.t1.exon8;Parent=MS.gene80045.t1
chr1.1 CDS 74572162 74572221 74572162 ID=cds.MS.gene80045.t1;Parent=MS.gene80045.t1
chr1.1 exon 74571910 74571990 74571910 ID=MS.gene80045.t1.exon9;Parent=MS.gene80045.t1
chr1.1 CDS 74571910 74571990 74571910 ID=cds.MS.gene80045.t1;Parent=MS.gene80045.t1
chr1.1 exon 74571697 74571789 74571697 ID=MS.gene80045.t1.exon10;Parent=MS.gene80045.t1
chr1.1 CDS 74571697 74571789 74571697 ID=cds.MS.gene80045.t1;Parent=MS.gene80045.t1
Gene Sequence

>MS.gene80045

ATGGCAGTTGAAAGGTCTGGAATAGCCAAAGATATTACAGAAGTGAGTCTGTGTATTTTGATGACATTTTGTGTGATATTTTAATGTGTTTTCTTTCTAATTAAATGTTTCTTACTGTGGATTACATCCTAATGTCCGTTGTTTATTTTGTATAGTTGATCGGAAAAACCCCGTTAGTATATCTGAATAAAATCACGGATGGTTCTGTTGCTCGAGTTGCTGCCAAACTGGAATTAATGGAACCATGCTCTAGTGTAAAAGACAGGTAATTTCTTACAATAGTGCTCTTGTATATTATTTGAGTTTTGGTTCTTGCTTTTGCGAGCAACATTCTTTTGAATTGGCTTGTGACTTTTTTCGCCTTTGCAATTTATGTTATAAATGTAGGATTGGCTATAGTATGATTGCTGATGCAGAGGAGAAGGGACTAATTACGCCTGGCCAGGTTGGTACTTGTTAAAGATTAAAATGAAAGTTCGTAGGATTGGTCATTGAAAGTGATGCTTCTAACAAATTAGCAGTTGTTTAAATTCCAGATGAACTATACATCGTTAATTTAGTTTCTGCGACAACTTTTATGTTGAATACTAGGAAATATGATAGGTGAGAGAAATACTAGTACTAATTTGGTGTTTCTTAGTTCATTATCACTGGCAGTGTTATCACAGAAAATAGTGGTTTGTTCAAATTCCGCTATGCAACAGTGTTATAGCGCCGCTATTTCACAATCTTTTGTACTAAATAGTGCATCACGGAACAATAGCACTTCGTTCAAATTCCGCTAAGCAATAGCGCTGCTATAGCTATTATTTAACCAAACTGATCACTGGTATTTATGTTGTTGCATGCGGACTATTGAAGAGTGTCCTTATTGAGCCAACAAGTGGCAATACGGGCATCGGATTGGCCTTCTTGGCAGCAGCCAAAGGCTACAAGCTTATCATTACAATGCCTGCTTCAATGAGTCTTGAAAGAAGAACCATTCTTCTCTCTTTTGGAGCTGAGTTGGTTCTCACGGATCCTGCAAAGGGAATGAAAGGGGCAGTTCAGAAAGCTGAAGAGATATTAGCCAAGACTCCAAATGCCTATATCCTTCAGCAATTTGAAAACCCTGCCAATCCAAAGGTACCTATCTACTCATTTGTTCTACAACTTTGGTAGTTAATGGTTGGCAACTTTGGATGACACATTTGTTATCATCGTTGTATTTACAGGTGCATTATGAAACCACTGGTCCAGAGATATGGAAAGGCACAGGAGGGAAAGTTGATGCATTTGTTAGTGGTATAGGGACTGGTGGTACCATAACAGGTGTTGGGAAATATCTTAAAGAGCAGAATTCCAATATCAAGGTTATCTTTAATTTTTCTATTTTCCTCGACAACACTAAGATGAATAAGTGCAAGATTTGGTTCTGATTTATAGCTGTAGTTATGCTCTCCTCTCTACTCCTAATTTCCCGTTTTGTTTCATTTTTTATATTATGCAGCTGTATGGAGTGGAGCCAGTTGAAAGTCCCGTTCTGTCCGGAGGAAAGCCTGGTTAGTTATAACACTGTTTTGTTCCTTACAGTTGAAATAAGAACTTACTTTTGAAGCTGTTGCTGATGTGCAATTTGCCATGATAAATGTCTAGGTCCACACAAGATTCAAGGGATTGGTGCTGGTTTTGTTCCCGGGGTATTGGATGTTAGTCTTGTCGACGAAGTAATTCAAGTAAGTTCCCCAGGTGCTGCTTTAGTTTTTATTACTGGCTTCCTAAAAGGCTAAACCCTTACCACAAAACCATTCTCTCAAATAATTTAACAGTTAAAGTTTGTAGAGAATGCACAAAAAGCCAATTGTAGATTTCTTAAATCCTGGTTTACTAAATCTTACGCACTGACTATTGTGCCACAATACACACTTATCATGTGAATGTAATTTTTAGAAGGATGATGATGGTGTCATTATTTTGCCATTTTTTTGGACATCTGTGAGACTGACAATTTATAATTTGTTAAACCTTATTGTGTGATTTGACAGATATCAAGTGATGAAGCAATAGAAACTGCAAAGCTTCTTGCCCTTAAAGAAGGCCTATTTGTAAGTCTAAACCTCTTAGAAAATCCAACACAATTGAGGCTATTCTGCCTCTAAGAGCTATCTATTTTGTTCTCTTTCGTGACTCATATTCAAATTTGTTAAACAAATAAGAAATGATTACTGTTGTACTTGGATTGATTTGTTGAGCCTCTACTATGAATATTGTTTTAGGTTGGAATATCATCTGGAGCTGCCGCGGCAGCTGCCATTAAGATAGCAAAACGACCAGAAAATGCTGGAAAGCTTATTGTTGTAAGTTGATTGAATCCATAAAAATTTTGATAAAAATATTTTGAATATCTGGCACAGTTGGTATGTTATAGGAAAAAAAGGGTTTACATCATTGACAATTTTCAATATGATATGGTGCAGGTTGTTTTCCCTAGCTTTGGTGAGAGGTACCTATCCTCTGTGCTGTTTGAATCGGTGAGACGGGAGGCTGAAAGCCTGACTTTTGAACCATGA

Protein sequence

>MS.gene80045.t1

MAVERSGIAKDITELIGKTPLVYLNKITDGSVARVAAKLELMEPCSSVKDRIGYSMIADAEEKGLITPGQSVLIEPTSGNTGIGLAFLAAAKGYKLIITMPASMSLERRTILLSFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYILQQFENPANPKVHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGVGKYLKEQNSNIKLYGVEPVESPVLSGGKPGPHKIQGIGAGFVPGVLDVSLVDEVIQISSDEAIETAKLLALKEGLFVGISSGAAAAAAIKIAKRPENAGKLIVVVFPSFGERYLSSVLFESVRREAESLTFEP