Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80299.t1 | XP_003619597.2 | 98 | 99 | 2 | 0 | 1 | 99 | 32 | 130 | 2.60E-50 | 207.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80299.t1 | G7KMW6 | 98.0 | 99 | 2 | 0 | 1 | 99 | 32 | 130 | 1.9e-50 | 207.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049808 | MS.gene80299 | 0.809555 | 1.79E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene80299 | 0.807147 | 5.83E-50 | -1.69E-46 |
| MS.gene049873 | MS.gene80299 | 0.802111 | 6.55E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene80299 | 0.826177 | 3.13E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene80299 | 0.846048 | 2.77E-59 | -1.69E-46 |
| MS.gene052519 | MS.gene80299 | 0.808199 | 3.48E-50 | -1.69E-46 |
| MS.gene053226 | MS.gene80299 | 0.808101 | 3.65E-50 | -1.69E-46 |
| MS.gene05458 | MS.gene80299 | 0.800098 | 1.69E-48 | -1.69E-46 |
| MS.gene055465 | MS.gene80299 | 0.807169 | 5.76E-50 | -1.69E-46 |
| MS.gene055466 | MS.gene80299 | 0.833839 | 4.23E-56 | -1.69E-46 |
| MS.gene055468 | MS.gene80299 | 0.821306 | 4.33E-53 | -1.69E-46 |
| MS.gene055580 | MS.gene80299 | -0.83796 | 3.82E-57 | -1.69E-46 |
| MS.gene056043 | MS.gene80299 | -0.823764 | 1.16E-53 | -1.69E-46 |
| MS.gene056595 | MS.gene80299 | 0.811825 | 5.77E-51 | -1.69E-46 |
| MS.gene058625 | MS.gene80299 | 0.836052 | 1.17E-56 | -1.69E-46 |
| MS.gene059842 | MS.gene80299 | 0.832177 | 1.10E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene80299 | 0.820933 | 5.28E-53 | -1.69E-46 |
| MS.gene060587 | MS.gene80299 | 0.815672 | 8.20E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80299.t1 | MTR_6g059920 | 97.980 | 99 | 2 | 0 | 1 | 99 | 32 | 130 | 3.76e-66 | 195 |
| MS.gene80299.t1 | MTR_5g005820 | 82.828 | 99 | 17 | 0 | 1 | 99 | 1 | 99 | 1.85e-54 | 164 |
| MS.gene80299.t1 | MTR_1g076840 | 53.763 | 93 | 43 | 0 | 2 | 94 | 37 | 129 | 5.47e-31 | 106 |
| MS.gene80299.t1 | MTR_6g060170 | 55.556 | 90 | 40 | 0 | 5 | 94 | 6 | 95 | 6.31e-31 | 105 |
| MS.gene80299.t1 | MTR_7g099200 | 46.591 | 88 | 47 | 0 | 9 | 96 | 7 | 94 | 4.06e-25 | 90.9 |
| MS.gene80299.t1 | MTR_1g069370 | 45.349 | 86 | 47 | 0 | 9 | 94 | 11 | 96 | 1.59e-22 | 84.3 |
| MS.gene80299.t1 | MTR_1g086000 | 32.258 | 93 | 63 | 0 | 5 | 97 | 45 | 137 | 7.90e-13 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80299.t1 | AT4G10280 | 52.577 | 97 | 43 | 1 | 5 | 98 | 44 | 140 | 1.85e-31 | 108 |
| MS.gene80299.t1 | AT4G10300 | 52.174 | 92 | 44 | 0 | 5 | 96 | 42 | 133 | 2.62e-29 | 102 |
| MS.gene80299.t1 | AT4G10290 | 47.959 | 98 | 48 | 1 | 5 | 99 | 16 | 113 | 7.08e-25 | 90.9 |
| MS.gene80299.t1 | AT3G04300 | 46.591 | 88 | 47 | 0 | 9 | 96 | 3 | 90 | 1.31e-22 | 84.3 |
| MS.gene80299.t1 | AT4G28703 | 43.011 | 93 | 44 | 1 | 11 | 94 | 10 | 102 | 1.98e-20 | 79.0 |
| MS.gene80299.t1 | AT2G32650 | 35.484 | 93 | 60 | 0 | 5 | 97 | 42 | 134 | 1.84e-15 | 67.0 |
| MS.gene80299.t1 | AT2G32650 | 35.484 | 93 | 60 | 0 | 5 | 97 | 42 | 134 | 1.84e-15 | 67.0 |
| MS.gene80299.t1 | AT2G32180 | 35.484 | 93 | 60 | 0 | 5 | 97 | 42 | 134 | 1.88e-15 | 67.0 |
| MS.gene80299.t1 | AT2G32180 | 35.484 | 93 | 60 | 0 | 5 | 97 | 42 | 134 | 1.88e-15 | 67.0 |
Find 17 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGCAACCTATGAAGTATT+TGG | 0.214287 | 6.1:+59648290 | MS.gene80299:CDS |
| AACACCAAGCTCAACGAGTT+TGG | 0.318473 | 6.1:-59648342 | None:intergenic |
| ATGTAATGTTCATTCCTTTA+GGG | 0.320882 | 6.1:-59650569 | None:intergenic |
| CATGTAATGTTCATTCCTTT+AGG | 0.324667 | 6.1:-59650570 | None:intergenic |
| CTTGACTCCAAATACTTCAT+AGG | 0.339404 | 6.1:-59648297 | None:intergenic |
| GTTACTGTTGAAAAGTCAAT+TGG | 0.386921 | 6.1:+59650510 | MS.gene80299:CDS |
| TTGAGCTTGGTGTTTCAACT+TGG | 0.460625 | 6.1:+59648351 | MS.gene80299:CDS |
| CTAAAGGAATGAACATTACA+TGG | 0.471661 | 6.1:+59650571 | MS.gene80299:CDS |
| GAAACAATGTATATACTTGA+AGG | 0.472797 | 6.1:+59650477 | MS.gene80299:CDS |
| AAACTATAGTGCTTCTTCAC+AGG | 0.477631 | 6.1:-59650606 | None:intergenic |
| CAATCCAAACTCGTTGAGCT+TGG | 0.530445 | 6.1:+59648338 | MS.gene80299:CDS |
| AAATACTTCATAGGTTGCCA+TGG | 0.568213 | 6.1:-59648288 | None:intergenic |
| TCTTCTTCTTCAAATGACCA+TGG | 0.569053 | 6.1:-59650456 | None:intergenic |
| TGAACATTCAACAGGTGGGA+AGG | 0.571776 | 6.1:+59650417 | MS.gene80299:intron |
| TCAACGAGTTTGGATTGTGA+TGG | 0.575023 | 6.1:-59648332 | None:intergenic |
| ACATTCAACAGGTGGGAAGG+TGG | 0.637553 | 6.1:+59650420 | MS.gene80299:intron |
| TAAAGGAATGAACATTACAT+GGG | 0.639073 | 6.1:+59650572 | MS.gene80299:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGTAAAAATTAAAAC+CGG | - | chr6.1:59649064-59649083 | None:intergenic | 10.0% |
| !! | ACAGAAAAAAAAAAAAAACT+TGG | - | chr6.1:59648845-59648864 | None:intergenic | 15.0% |
| !! | TATAATGAAATATGAAAAGA+TGG | - | chr6.1:59650367-59650386 | None:intergenic | 15.0% |
| !!! | TTTCTTTGATTTCATTATTT+TGG | - | chr6.1:59649737-59649756 | None:intergenic | 15.0% |
| !!! | TTTTTTGTATGATCAATTAT+GGG | + | chr6.1:59648479-59648498 | MS.gene80299:intron | 15.0% |
| !! | ATCATAAAATTTCAAATAGC+AGG | - | chr6.1:59649304-59649323 | None:intergenic | 20.0% |
| !!! | ACTTTTTTATCATCATCTAA+TGG | + | chr6.1:59649538-59649557 | MS.gene80299:intron | 20.0% |
| !!! | CTTTTTTGTATGATCAATTA+TGG | + | chr6.1:59648478-59648497 | MS.gene80299:intron | 20.0% |
| !!! | TCTTTTGCATAACAAATTTT+GGG | + | chr6.1:59648642-59648661 | MS.gene80299:intron | 20.0% |
| ! | AATAACCATAAATAGGTTTG+AGG | + | chr6.1:59650215-59650234 | MS.gene80299:intron | 25.0% |
| ! | ATGTAATGTTCATTCCTTTA+GGG | - | chr6.1:59650572-59650591 | None:intergenic | 25.0% |
| ! | CATGCTAAATAACCATAAAT+AGG | + | chr6.1:59650208-59650227 | MS.gene80299:intron | 25.0% |
| ! | CATTTATTCTCTTCTGTTAT+GGG | + | chr6.1:59649959-59649978 | MS.gene80299:intron | 25.0% |
| ! | GAAACAATGTATATACTTGA+AGG | + | chr6.1:59650477-59650496 | MS.gene80299:CDS | 25.0% |
| ! | GTGATAAAAAAAGGAGAAAA+GGG | - | chr6.1:59649404-59649423 | None:intergenic | 25.0% |
| ! | TAAAGGAATGAACATTACAT+GGG | + | chr6.1:59650572-59650591 | MS.gene80299:CDS | 25.0% |
| ! | TCATTTATTCTCTTCTGTTA+TGG | + | chr6.1:59649958-59649977 | MS.gene80299:intron | 25.0% |
| ! | TGATAAAAAAAGGAGAAAAG+GGG | - | chr6.1:59649403-59649422 | None:intergenic | 25.0% |
| !! | AATGACCATGGAATTTTTAA+TGG | - | chr6.1:59650447-59650466 | None:intergenic | 25.0% |
| !! | AGAAAATTGTCTTTTCATAG+AGG | - | chr6.1:59649917-59649936 | None:intergenic | 25.0% |
| !! | CTCTTTTGCATAACAAATTT+TGG | + | chr6.1:59648641-59648660 | MS.gene80299:intron | 25.0% |
| !! | GAAAATTGTCTTTTCATAGA+GGG | - | chr6.1:59649916-59649935 | None:intergenic | 25.0% |
| !! | TTTCATACTCATATTTGTTG+TGG | + | chr6.1:59648682-59648701 | MS.gene80299:intron | 25.0% |
| !! | TTTTCTGTTTAACCTTTCTA+AGG | + | chr6.1:59648857-59648876 | MS.gene80299:intron | 25.0% |
| !!! | AATAGCATGTTTTTGTTTTC+TGG | + | chr6.1:59648712-59648731 | MS.gene80299:intron | 25.0% |
| !!! | AATTTAGTTGTTTTCCCTAA+AGG | + | chr6.1:59650555-59650574 | MS.gene80299:CDS | 25.0% |
| !!! | ATAGCATGTTTTTGTTTTCT+GGG | + | chr6.1:59648713-59648732 | MS.gene80299:intron | 25.0% |
| !!! | ATTTTAGGTTCTTTGGAATT+GGG | + | chr6.1:59648792-59648811 | MS.gene80299:intron | 25.0% |
| !!! | CTTTAAAACAAACACATCAA+TGG | - | chr6.1:59648451-59648470 | None:intergenic | 25.0% |
| !!! | GGTTTGTTTTGTAATTTAGA+TGG | + | chr6.1:59648816-59648835 | MS.gene80299:intron | 25.0% |
| !!! | TCAATTGGATCTTTTGAAAT+TGG | + | chr6.1:59650525-59650544 | MS.gene80299:CDS | 25.0% |
| !!! | TTCATACTCATATTTGTTGT+GGG | + | chr6.1:59648683-59648702 | MS.gene80299:intron | 25.0% |
| !!! | TTTACACTCATATTTGTTGT+GGG | + | chr6.1:59648520-59648539 | MS.gene80299:intron | 25.0% |
| !!! | TTTTACACTCATATTTGTTG+TGG | + | chr6.1:59648519-59648538 | MS.gene80299:intron | 25.0% |
| AATCTGTTTGAACATTCAAC+AGG | + | chr6.1:59650409-59650428 | MS.gene80299:intron | 30.0% | |
| CATCTAATTGAATCGAATCA+GGG | + | chr6.1:59649111-59649130 | MS.gene80299:intron | 30.0% | |
| CATGTAATGTTCATTCCTTT+AGG | - | chr6.1:59650573-59650592 | None:intergenic | 30.0% | |
| CTAAAGGAATGAACATTACA+TGG | + | chr6.1:59650571-59650590 | MS.gene80299:CDS | 30.0% | |
| GAAGAGAAAGAAAGTTACTT+AGG | - | chr6.1:59648377-59648396 | None:intergenic | 30.0% | |
| GCAGTATACTACTGAATTAA+AGG | + | chr6.1:59649631-59649650 | MS.gene80299:intron | 30.0% | |
| GGTGATAAAAAAAGGAGAAA+AGG | - | chr6.1:59649405-59649424 | None:intergenic | 30.0% | |
| GTTACTGTTGAAAAGTCAAT+TGG | + | chr6.1:59650510-59650529 | MS.gene80299:CDS | 30.0% | |
| TCATCTAATTGAATCGAATC+AGG | + | chr6.1:59649110-59649129 | MS.gene80299:intron | 30.0% | |
| TCCAAAGAACCTAAAATGTA+GGG | - | chr6.1:59648789-59648808 | None:intergenic | 30.0% | |
| TTATGGGCAAATTGAAGTTA+TGG | + | chr6.1:59649975-59649994 | MS.gene80299:intron | 30.0% | |
| TTCCAAAGAACCTAAAATGT+AGG | - | chr6.1:59648790-59648809 | None:intergenic | 30.0% | |
| TTGATTGATATGCTTGATAG+TGG | + | chr6.1:59650021-59650040 | MS.gene80299:intron | 30.0% | |
| TTTATCATCATCTAATGGCT+AGG | + | chr6.1:59649543-59649562 | MS.gene80299:intron | 30.0% | |
| ! | ATCTAGTTTAGAGAATTTGG+TGG | + | chr6.1:59650152-59650171 | MS.gene80299:intron | 30.0% |
| ! | GCTATTAAACCCTACATTTT+AGG | + | chr6.1:59648777-59648796 | MS.gene80299:intron | 30.0% |
| ! | TCTAGTTTAGAGAATTTGGT+GGG | + | chr6.1:59650153-59650172 | MS.gene80299:intron | 30.0% |
| ! | TGCATCTAGTTTAGAGAATT+TGG | + | chr6.1:59650149-59650168 | MS.gene80299:intron | 30.0% |
| !! | GCAAAATTAGATCGTTTTTC+CGG | - | chr6.1:59648926-59648945 | None:intergenic | 30.0% |
| !! | TATTTTGGAAATCTCTCTCA+GGG | - | chr6.1:59649722-59649741 | None:intergenic | 30.0% |
| !! | TCATACTCATATTTGTTGTG+GGG | + | chr6.1:59648684-59648703 | MS.gene80299:intron | 30.0% |
| !! | TTACACTCATATTTGTTGTG+GGG | + | chr6.1:59648521-59648540 | MS.gene80299:intron | 30.0% |
| !!! | ATTGGATCTTTTGAAATTGG+AGG | + | chr6.1:59650528-59650547 | MS.gene80299:CDS | 30.0% |
| !!! | CATTTTAGGTTCTTTGGAAT+TGG | + | chr6.1:59648791-59648810 | MS.gene80299:intron | 30.0% |
| !!! | TAGCATGTTTTTGTTTTCTG+GGG | + | chr6.1:59648714-59648733 | MS.gene80299:intron | 30.0% |
| !!! | TTATTTTGGAAATCTCTCTC+AGG | - | chr6.1:59649723-59649742 | None:intergenic | 30.0% |
| AAACTATAGTGCTTCTTCAC+AGG | - | chr6.1:59650609-59650628 | None:intergenic | 35.0% | |
| AATTCAGTAGTATACTGCCA+TGG | - | chr6.1:59649629-59649648 | None:intergenic | 35.0% | |
| ACTGTTTAGTTGTGTTGTGT+TGG | + | chr6.1:59648752-59648771 | MS.gene80299:intron | 35.0% | |
| CAAACACAGAATCCTTAGAA+AGG | - | chr6.1:59648872-59648891 | None:intergenic | 35.0% | |
| CAATTTGAATCTCCAATCCA+TGG | - | chr6.1:59649782-59649801 | None:intergenic | 35.0% | |
| CTTGACTCCAAATACTTCAT+AGG | - | chr6.1:59648300-59648319 | None:intergenic | 35.0% | |
| GAATCAATTGAACCATAACC+TGG | + | chr6.1:59649136-59649155 | MS.gene80299:intron | 35.0% | |
| GTGGTCCATTAAAAATTCCA+TGG | + | chr6.1:59650439-59650458 | MS.gene80299:CDS | 35.0% | |
| GTTTAACAACTATACACCGA+CGG | - | chr6.1:59650278-59650297 | None:intergenic | 35.0% | |
| TACTTCACAGCTGATTACTA+AGG | - | chr6.1:59648898-59648917 | None:intergenic | 35.0% | |
| TCTCTAAACTAGATGCAGTA+GGG | - | chr6.1:59650146-59650165 | None:intergenic | 35.0% | |
| TCTTCTTCTTCAAATGACCA+TGG | - | chr6.1:59650459-59650478 | None:intergenic | 35.0% | |
| TGTAGCTTAGTACCAAAGTT+AGG | - | chr6.1:59649682-59649701 | None:intergenic | 35.0% | |
| TGTTTGAACATTCAACAGGT+GGG | + | chr6.1:59650413-59650432 | MS.gene80299:intron | 35.0% | |
| TTAGTACCAAAGTTAGGAGA+AGG | - | chr6.1:59649676-59649695 | None:intergenic | 35.0% | |
| TTCTCTAAACTAGATGCAGT+AGG | - | chr6.1:59650147-59650166 | None:intergenic | 35.0% | |
| ! | AAATCTCTCTCAGGGTATTA+AGG | - | chr6.1:59649714-59649733 | None:intergenic | 35.0% |
| ! | AATCTCTCTCAGGGTATTAA+GGG | - | chr6.1:59649713-59649732 | None:intergenic | 35.0% |
| ! | ATGGCAACCTATGAAGTATT+TGG | + | chr6.1:59648290-59648309 | MS.gene80299:CDS | 35.0% |
| ! | CTAACTCCAGAGTATTATGA+GGG | + | chr6.1:59650108-59650127 | MS.gene80299:intron | 35.0% |
| ! | TAACTCCAGAGTATTATGAG+GGG | + | chr6.1:59650109-59650128 | MS.gene80299:intron | 35.0% |
| ! | TCTAACTCCAGAGTATTATG+AGG | + | chr6.1:59650107-59650126 | MS.gene80299:intron | 35.0% |
| ! | TTTCATCTCATTTTCACCGT+CGG | + | chr6.1:59650259-59650278 | MS.gene80299:intron | 35.0% |
| !! | CATACTCATATTTGTTGTGG+GGG | + | chr6.1:59648685-59648704 | MS.gene80299:intron | 35.0% |
| !! | TACACTCATATTTGTTGTGG+GGG | + | chr6.1:59648522-59648541 | MS.gene80299:intron | 35.0% |
| !!! | ACCCTACATTTTAGGTTCTT+TGG | + | chr6.1:59648785-59648804 | MS.gene80299:intron | 35.0% |
| !!! | AGCATGTTTTTGTTTTCTGG+GGG | + | chr6.1:59648715-59648734 | MS.gene80299:intron | 35.0% |
| ATATTGGGTACATTGCAGTC+TGG | + | chr6.1:59649033-59649052 | MS.gene80299:intron | 40.0% | |
| CACTATCCTTCTCCTAACTT+TGG | + | chr6.1:59649667-59649686 | MS.gene80299:intron | 40.0% | |
| CAGACCAATGTTTCGAAAAC+CGG | + | chr6.1:59648951-59648970 | MS.gene80299:intron | 40.0% | |
| CTAATGGCTAGGATTCACAA+TGG | + | chr6.1:59649554-59649573 | MS.gene80299:intron | 40.0% | |
| CTGTTTGAACATTCAACAGG+TGG | + | chr6.1:59650412-59650431 | MS.gene80299:intron | 40.0% | |
| GAGTATTATGAGGGGATTCA+CGG | + | chr6.1:59650071-59650090 | MS.gene80299:intron | 40.0% | |
| GATTTAGATTCTCCGCAATC+AGG | - | chr6.1:59649580-59649599 | None:intergenic | 40.0% | |
| GGTCTCAATGGTTCAATCTT+CGG | + | chr6.1:59649160-59649179 | MS.gene80299:intron | 40.0% | |
| GTCAGCCTCAAACCTATTTA+TGG | - | chr6.1:59650223-59650242 | None:intergenic | 40.0% | |
| GTTAGGAGAAGGATAGTGAA+AGG | - | chr6.1:59649665-59649684 | None:intergenic | 40.0% | |
| TCAACGAGTTTGGATTGTGA+TGG | - | chr6.1:59648335-59648354 | None:intergenic | 40.0% | |
| TCAATTGAACCATAACCTGG+AGG | + | chr6.1:59649139-59649158 | MS.gene80299:intron | 40.0% | |
| TCAGCTGTGAAGTATGAAAC+CGG | + | chr6.1:59648904-59648923 | MS.gene80299:intron | 40.0% | |
| TGAATCCCCTCATAATACTC+TGG | - | chr6.1:59650071-59650090 | None:intergenic | 40.0% | |
| TGGATGTGCAATCCATATCA+AGG | + | chr6.1:59650041-59650060 | MS.gene80299:intron | 40.0% | |
| TTCAACCGTTTGAACCAATC+AGG | - | chr6.1:59648982-59649001 | None:intergenic | 40.0% | |
| TTCGGGTCGGTGATAAAAAA+AGG | - | chr6.1:59649413-59649432 | None:intergenic | 40.0% | |
| ! | ACCAACCTGATTGGTTCAAA+CGG | + | chr6.1:59648974-59648993 | MS.gene80299:intron | 40.0% |
| ! | AGGAACTCCAGAGTATTATG+AGG | + | chr6.1:59650061-59650080 | MS.gene80299:intron | 40.0% |
| ! | GAACTCCAGAGTATTATGAG+GGG | + | chr6.1:59650063-59650082 | MS.gene80299:intron | 40.0% |
| ! | GGAACTCCAGAGTATTATGA+GGG | + | chr6.1:59650062-59650081 | MS.gene80299:intron | 40.0% |
| !! | GTGGCAGTTGGTTTGATATT+GGG | + | chr6.1:59649018-59649037 | MS.gene80299:intron | 40.0% |
| !! | TACTCTGGAGTTCCTTGATA+TGG | - | chr6.1:59650056-59650075 | None:intergenic | 40.0% |
| !! | TGTGGCAGTTGGTTTGATAT+TGG | + | chr6.1:59649017-59649036 | MS.gene80299:intron | 40.0% |
| !! | TTAGGTTCTTTGGAATTGGG+AGG | + | chr6.1:59648795-59648814 | MS.gene80299:intron | 40.0% |
| !! | TTGAGCTTGGTGTTTCAACT+TGG | + | chr6.1:59648351-59648370 | MS.gene80299:CDS | 40.0% |
| !!! | GGATCTTTTGAAATTGGAGG+TGG | + | chr6.1:59650531-59650550 | MS.gene80299:CDS | 40.0% |
| AACACCAAGCTCAACGAGTT+TGG | - | chr6.1:59648345-59648364 | None:intergenic | 45.0% | |
| ACCGTTTGAACCAATCAGGT+TGG | - | chr6.1:59648978-59648997 | None:intergenic | 45.0% | |
| AGATGCTCAGTGATGCAATG+TGG | + | chr6.1:59649348-59649367 | MS.gene80299:intron | 45.0% | |
| ATTGAACCATTGAGACCTCC+AGG | - | chr6.1:59649157-59649176 | None:intergenic | 45.0% | |
| CAAACGGTTGAACCAGGAAT+TGG | + | chr6.1:59648990-59649009 | MS.gene80299:intron | 45.0% | |
| CAATCCAAACTCGTTGAGCT+TGG | + | chr6.1:59648338-59648357 | MS.gene80299:CDS | 45.0% | |
| CAATGGTTCAATCTTCGGTC+TGG | + | chr6.1:59649165-59649184 | MS.gene80299:intron | 45.0% | |
| GATTCACAATGGCCTGATTG+CGG | + | chr6.1:59649565-59649584 | MS.gene80299:intron | 45.0% | |
| GTGCAAGCGCGTATTACTTT+AGG | - | chr6.1:59650189-59650208 | None:intergenic | 45.0% | |
| TGAACATTCAACAGGTGGGA+AGG | + | chr6.1:59650417-59650436 | MS.gene80299:intron | 45.0% | |
| TTGGTTCAAACGGTTGAACC+AGG | + | chr6.1:59648984-59649003 | MS.gene80299:intron | 45.0% | |
| ! | ACATTGCAGTCTGGTTCAAC+CGG | + | chr6.1:59649042-59649061 | MS.gene80299:intron | 45.0% |
| ! | CCATGGAGAGACACTCTTTT+TGG | - | chr6.1:59649765-59649784 | None:intergenic | 45.0% |
| ! | TGGTCCGGTTTTCGAAACAT+TGG | - | chr6.1:59648958-59648977 | None:intergenic | 45.0% |
| !! | AAGAGTGTCTCTCCATGGAT+TGG | + | chr6.1:59649767-59649786 | MS.gene80299:intron | 45.0% |
| !! | ACTCATATTTGTTGTGGGGG+TGG | + | chr6.1:59648525-59648544 | MS.gene80299:intron | 45.0% |
| !! | ACTCTGGAGTTAGATGCAGT+AGG | - | chr6.1:59650101-59650120 | None:intergenic | 45.0% |
| !! | CCAAAAAGAGTGTCTCTCCA+TGG | + | chr6.1:59649762-59649781 | MS.gene80299:intron | 45.0% |
| !! | CTCTGGAGTTAGATGCAGTA+GGG | - | chr6.1:59650100-59650119 | None:intergenic | 45.0% |
| !! | TTGAACCAATCAGGTTGGTC+CGG | - | chr6.1:59648973-59648992 | None:intergenic | 45.0% |
| !!! | TTTTCTGGGGGTGTTTGTGA+GGG | + | chr6.1:59648727-59648746 | MS.gene80299:intron | 45.0% |
| ACAGCTCACAAGTGAAGCCA+TGG | + | chr6.1:59649609-59649628 | MS.gene80299:intron | 50.0% | |
| ACATTCAACAGGTGGGAAGG+TGG | + | chr6.1:59650420-59650439 | MS.gene80299:intron | 50.0% | |
| CCATAACCTGGAGGTCTCAA+TGG | + | chr6.1:59649148-59649167 | MS.gene80299:intron | 50.0% | |
| CCATTGAGACCTCCAGGTTA+TGG | - | chr6.1:59649151-59649170 | None:intergenic | 50.0% | |
| CTCTTGATTGCGTGACTGCA+GGG | - | chr6.1:59649438-59649457 | None:intergenic | 50.0% | |
| GAAAACCGGACCAACCTGAT+TGG | + | chr6.1:59648965-59648984 | MS.gene80299:intron | 50.0% | |
| GAACCAGGAATTGGTCAGTG+TGG | + | chr6.1:59648999-59649018 | MS.gene80299:intron | 50.0% | |
| GAATTGGTCAGTGTGGCAGT+TGG | + | chr6.1:59649006-59649025 | MS.gene80299:intron | 50.0% | |
| TCTCTTGATTGCGTGACTGC+AGG | - | chr6.1:59649439-59649458 | None:intergenic | 50.0% | |
| TTGCGTGACTGCAGGGAATT+CGG | - | chr6.1:59649431-59649450 | None:intergenic | 50.0% | |
| !! | TTTCTGGGGGTGTTTGTGAG+GGG | + | chr6.1:59648728-59648747 | MS.gene80299:intron | 50.0% |
| !!! | GTTTTCTGGGGGTGTTTGTG+AGG | + | chr6.1:59648726-59648745 | MS.gene80299:intron | 50.0% |
| CTGCCACACTGACCAATTCC+TGG | - | chr6.1:59649005-59649024 | None:intergenic | 55.0% | |
| TGACTGCAGGGAATTCGGGT+CGG | - | chr6.1:59649426-59649445 | None:intergenic | 55.0% | |
| TGCGTGACTGCAGGGAATTC+GGG | - | chr6.1:59649430-59649449 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 59648290 | 59650641 | 59648290 | ID=MS.gene80299 |
| chr6.1 | mRNA | 59648290 | 59650641 | 59648290 | ID=MS.gene80299.t1;Parent=MS.gene80299 |
| chr6.1 | exon | 59648290 | 59648378 | 59648290 | ID=MS.gene80299.t1.exon1;Parent=MS.gene80299.t1 |
| chr6.1 | CDS | 59648290 | 59648378 | 59648290 | ID=cds.MS.gene80299.t1;Parent=MS.gene80299.t1 |
| chr6.1 | exon | 59650431 | 59650641 | 59650431 | ID=MS.gene80299.t1.exon2;Parent=MS.gene80299.t1 |
| chr6.1 | CDS | 59650431 | 59650641 | 59650431 | ID=cds.MS.gene80299.t1;Parent=MS.gene80299.t1 |
| Gene Sequence |
| Protein sequence |
