Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81959.t1 | XP_003602138.1 | 93.7 | 333 | 21 | 0 | 1 | 333 | 34 | 366 | 1.10E-180 | 642.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81959.t1 | Q84VY3 | 70.3 | 337 | 96 | 1 | 1 | 333 | 55 | 391 | 5.5e-141 | 501.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81959.t1 | G7J5N5 | 93.7 | 333 | 21 | 0 | 1 | 333 | 34 | 366 | 7.8e-181 | 642.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050298 | MS.gene81959 | 0.811073 | 8.40E-51 | -1.69E-46 |
| MS.gene050563 | MS.gene81959 | 0.804023 | 2.64E-49 | -1.69E-46 |
| MS.gene050584 | MS.gene81959 | 0.803654 | 3.14E-49 | -1.69E-46 |
| MS.gene050585 | MS.gene81959 | 0.804782 | 1.83E-49 | -1.69E-46 |
| MS.gene050587 | MS.gene81959 | 0.833757 | 4.44E-56 | -1.69E-46 |
| MS.gene05143 | MS.gene81959 | 0.82267 | 2.09E-53 | -1.69E-46 |
| MS.gene052142 | MS.gene81959 | 0.813699 | 2.24E-51 | -1.69E-46 |
| MS.gene053383 | MS.gene81959 | 0.83857 | 2.66E-57 | -1.69E-46 |
| MS.gene05456 | MS.gene81959 | 0.834262 | 3.32E-56 | -1.69E-46 |
| MS.gene059006 | MS.gene81959 | 0.801431 | 9.03E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81959.t1 | MTR_3g090020 | 93.694 | 333 | 21 | 0 | 1 | 333 | 34 | 366 | 0.0 | 654 |
| MS.gene81959.t1 | MTR_3g090100 | 92.492 | 333 | 25 | 0 | 1 | 333 | 34 | 366 | 0.0 | 650 |
| MS.gene81959.t1 | MTR_3g089025 | 82.583 | 333 | 58 | 0 | 1 | 333 | 37 | 369 | 0.0 | 583 |
| MS.gene81959.t1 | MTR_3g090010 | 79.758 | 331 | 67 | 0 | 1 | 331 | 38 | 368 | 0.0 | 565 |
| MS.gene81959.t1 | MTR_1g029150 | 74.405 | 336 | 83 | 1 | 1 | 333 | 55 | 390 | 0.0 | 539 |
| MS.gene81959.t1 | MTR_5g024130 | 66.467 | 334 | 109 | 2 | 1 | 333 | 62 | 393 | 3.28e-169 | 476 |
| MS.gene81959.t1 | MTR_4g087440 | 66.467 | 334 | 109 | 2 | 1 | 333 | 62 | 393 | 3.66e-169 | 476 |
| MS.gene81959.t1 | MTR_3g090110 | 50.000 | 118 | 36 | 1 | 177 | 294 | 1 | 95 | 2.46e-32 | 117 |
| MS.gene81959.t1 | MTR_3g089980 | 60.204 | 98 | 26 | 1 | 197 | 294 | 6 | 90 | 9.23e-29 | 107 |
| MS.gene81959.t1 | MTR_3g089973 | 40.541 | 148 | 44 | 3 | 177 | 324 | 1 | 104 | 1.28e-21 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81959.t1 | AT1G43800 | 70.326 | 337 | 96 | 1 | 1 | 333 | 55 | 391 | 0.0 | 513 |
| MS.gene81959.t1 | AT3G02630 | 66.066 | 333 | 109 | 2 | 1 | 331 | 64 | 394 | 2.95e-166 | 469 |
| MS.gene81959.t1 | AT5G16240 | 65.766 | 333 | 110 | 2 | 1 | 331 | 62 | 392 | 4.15e-165 | 466 |
| MS.gene81959.t1 | AT2G43710 | 64.671 | 334 | 115 | 2 | 1 | 333 | 70 | 401 | 1.65e-162 | 459 |
| MS.gene81959.t1 | AT2G43710 | 64.671 | 334 | 115 | 2 | 1 | 333 | 70 | 401 | 2.03e-162 | 459 |
| MS.gene81959.t1 | AT3G02610 | 62.832 | 339 | 119 | 3 | 1 | 333 | 76 | 413 | 1.07e-160 | 455 |
| MS.gene81959.t1 | AT3G02610 | 62.832 | 339 | 119 | 3 | 1 | 333 | 74 | 411 | 1.21e-160 | 455 |
| MS.gene81959.t1 | AT5G16230 | 62.500 | 336 | 120 | 4 | 3 | 333 | 67 | 401 | 5.74e-159 | 451 |
| MS.gene81959.t1 | AT3G02620 | 61.652 | 339 | 123 | 3 | 1 | 333 | 69 | 406 | 2.60e-157 | 446 |
| MS.gene81959.t1 | AT3G02620 | 61.652 | 339 | 123 | 3 | 1 | 333 | 66 | 403 | 3.39e-157 | 446 |
| MS.gene81959.t1 | AT5G16230 | 62.270 | 326 | 118 | 3 | 12 | 333 | 1 | 325 | 2.95e-155 | 438 |
| MS.gene81959.t1 | AT3G02620 | 62.195 | 328 | 117 | 3 | 12 | 333 | 1 | 327 | 1.55e-153 | 434 |
Find 83 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATGATTATCTTGTGGTTT+TGG | 0.271084 | 3.2:-76352226 | MS.gene81959:CDS |
| AATCTTGTGCTGCATCATTT+TGG | 0.271325 | 3.2:+76350667 | None:intergenic |
| CCAACTTGTTTATCCATGTT+TGG | 0.336928 | 3.2:+76352166 | None:intergenic |
| GTCTCACACCATGGGCTATA+TGG | 0.350432 | 3.2:-76352116 | MS.gene81959:CDS |
| GTGGACTTGCACCTAGATTA+AGG | 0.352719 | 3.2:-76350451 | MS.gene81959:CDS |
| CTCTCAGGGCCTGCACTTGA+TGG | 0.353548 | 3.2:+76352268 | None:intergenic |
| TTGTTCATGGTGTAGGATTT+GGG | 0.366166 | 3.2:-76350917 | MS.gene81959:intron |
| GGGCTATATGGTCACGCTCT+TGG | 0.370720 | 3.2:-76352104 | MS.gene81959:CDS |
| TGCCAGCTCCAATCAAATAT+TGG | 0.374430 | 3.2:+76351992 | None:intergenic |
| TGTTCAAATCACTAGAGAAA+TGG | 0.385450 | 3.2:-76352389 | MS.gene81959:CDS |
| CTTGATTAGACGATGGAGAT+TGG | 0.392791 | 3.2:-76350525 | MS.gene81959:CDS |
| AAGACTATCCAATATTTGAT+TGG | 0.400329 | 3.2:-76352000 | MS.gene81959:CDS |
| GCTCAGCCGTTCGATCTCTC+AGG | 0.408301 | 3.2:+76352253 | None:intergenic |
| GTTCAAATCACTAGAGAAAT+GGG | 0.415788 | 3.2:-76352388 | MS.gene81959:CDS |
| TCTGCGGTGGCACAACGTAT+TGG | 0.420320 | 3.2:-76350587 | MS.gene81959:CDS |
| GGCTGCCAGCATTCCTCCAC+AGG | 0.422913 | 3.2:+76352336 | None:intergenic |
| GTGTACACAAAACCCATGTA+TGG | 0.438769 | 3.2:+76350881 | None:intergenic |
| TCTTCTAGTTTCCTTAATCT+AGG | 0.439715 | 3.2:+76350440 | None:intergenic |
| GATGGAGTTGGCGACGAGAC+TGG | 0.447459 | 3.2:-76352144 | MS.gene81959:CDS |
| AGATCAACAACAAATTTACT+TGG | 0.459272 | 3.2:-76350394 | MS.gene81959:CDS |
| ATCCAATATTTGATTGGAGC+TGG | 0.463614 | 3.2:-76351994 | MS.gene81959:CDS |
| TACCGAAAACAACCCATACA+TGG | 0.467155 | 3.2:-76350894 | MS.gene81959:CDS |
| CTCGTACTTGCACGCGTATG+CGG | 0.473722 | 3.2:-76350788 | MS.gene81959:CDS |
| AGTGGATCCCACCGAGGCTA+TGG | 0.482931 | 3.2:-76350699 | MS.gene81959:CDS |
| GGCTATGGCCACCATAGCCT+CGG | 0.489653 | 3.2:+76350688 | None:intergenic |
| TGGAGATTGGAGAAGCTTGA+GGG | 0.490817 | 3.2:-76350512 | MS.gene81959:CDS |
| TCTCTTTAGCCAACCTACCT+AGG | 0.494048 | 3.2:+76350819 | None:intergenic |
| TTCACAAAATGTGTTGCCAT+TGG | 0.497194 | 3.2:-76352364 | MS.gene81959:CDS |
| AAAACCACAAGATAATCATC+TGG | 0.498146 | 3.2:+76352228 | None:intergenic |
| TTTATCCATGTTTGGTACGT+AGG | 0.501588 | 3.2:+76352174 | None:intergenic |
| AATGTCTCCTCAAAAGAAAG+AGG | 0.507824 | 3.2:-76352412 | MS.gene81959:CDS |
| TCGTACTTGCACGCGTATGC+GGG | 0.518633 | 3.2:-76350787 | MS.gene81959:CDS |
| TCGGAAGGTAGTGATGAGTC+TGG | 0.523237 | 3.2:+76352300 | None:intergenic |
| GCTTCCAGATGATTATCTTG+TGG | 0.527931 | 3.2:-76352232 | MS.gene81959:CDS |
| CCCGCTCACTTGATGCATGA+TGG | 0.529067 | 3.2:-76350638 | MS.gene81959:CDS |
| CCAAACATGGATAAACAAGT+TGG | 0.530351 | 3.2:-76352166 | MS.gene81959:CDS |
| CATTGCCTACGTACCAAACA+TGG | 0.538689 | 3.2:-76352179 | MS.gene81959:CDS |
| ATATTTGATTGGAGCTGGCA+TGG | 0.538813 | 3.2:-76351989 | MS.gene81959:intron |
| TTAAACCTGTGGAGGAATGC+TGG | 0.548548 | 3.2:-76352341 | MS.gene81959:CDS |
| CCATCATGCATCAAGTGAGC+GGG | 0.549039 | 3.2:+76350638 | None:intergenic |
| AAAACTTATCTCTATCTCTC+CGG | 0.550395 | 3.2:-76352048 | MS.gene81959:CDS |
| AAATGTGGCTCGCTCTTGAA+AGG | 0.555847 | 3.2:+76350856 | None:intergenic |
| ATAAACAAGTTGGATGGAGT+TGG | 0.559959 | 3.2:-76352156 | MS.gene81959:CDS |
| GGATCCCACCGAGGCTATGG+TGG | 0.562827 | 3.2:-76350696 | MS.gene81959:CDS |
| ATGGAGATTGGAGAAGCTTG+AGG | 0.564413 | 3.2:-76350513 | MS.gene81959:CDS |
| CATGCACATATCAACTCTAC+CGG | 0.564833 | 3.2:+76352029 | None:intergenic |
| TGTGGAAAAGCTTCTAGAAG+TGG | 0.566245 | 3.2:-76350717 | MS.gene81959:CDS |
| TGAGTTCATCCATCAAGTGC+AGG | 0.567672 | 3.2:-76352277 | MS.gene81959:CDS |
| TCCTCCACAGGTTTAACCAA+TGG | 0.568150 | 3.2:+76352348 | None:intergenic |
| TATGGCCACCATAGCCTCGG+TGG | 0.570103 | 3.2:+76350691 | None:intergenic |
| ACATGGATAAACAAGTTGGA+TGG | 0.572710 | 3.2:-76352162 | MS.gene81959:CDS |
| CTCAGCCGTTCGATCTCTCA+GGG | 0.579284 | 3.2:+76352254 | None:intergenic |
| CTTGAGGGTTTGACAAGCGA+AGG | 0.581134 | 3.2:-76350497 | MS.gene81959:CDS |
| CGCATACGCGTGCAAGTACG+AGG | 0.584480 | 3.2:+76350789 | None:intergenic |
| ACACGGAAACCTAGGTAGGT+TGG | 0.591464 | 3.2:-76350828 | MS.gene81959:CDS |
| TTTGTATCACACGGAAACCT+AGG | 0.594979 | 3.2:-76350836 | MS.gene81959:CDS |
| TGGTTCAAGTCTCACACCAT+GGG | 0.600203 | 3.2:-76352124 | MS.gene81959:CDS |
| TAGAGTTCTTGATTAGACGA+TGG | 0.605110 | 3.2:-76350532 | MS.gene81959:CDS |
| TCCATCATGCATCAAGTGAG+CGG | 0.608659 | 3.2:+76350637 | None:intergenic |
| CTGGTTCAAGTCTCACACCA+TGG | 0.612232 | 3.2:-76352125 | MS.gene81959:CDS |
| GCAGGCCCTGAGAGATCGAA+CGG | 0.616767 | 3.2:-76352259 | MS.gene81959:CDS |
| ATGGCCACCATAGCCTCGGT+GGG | 0.619166 | 3.2:+76350692 | None:intergenic |
| CGAGCCACATTTGTATCACA+CGG | 0.623581 | 3.2:-76350845 | MS.gene81959:CDS |
| GAGCGTGACCATATAGCCCA+TGG | 0.625365 | 3.2:+76352108 | None:intergenic |
| ACCGAAAACAACCCATACAT+GGG | 0.628237 | 3.2:-76350893 | MS.gene81959:CDS |
| GCCATTGGTTAAACCTGTGG+AGG | 0.632502 | 3.2:-76352349 | MS.gene81959:CDS |
| GGTAGGTTGGCTAAAGAGAG+AGG | 0.635441 | 3.2:-76350815 | MS.gene81959:CDS |
| TCCTCACATATGCATTCTCG+TGG | 0.635762 | 3.2:+76350741 | None:intergenic |
| TGTACACAAAACCCATGTAT+GGG | 0.636404 | 3.2:+76350882 | None:intergenic |
| TATCACACGGAAACCTAGGT+AGG | 0.636743 | 3.2:-76350832 | MS.gene81959:CDS |
| CTCGTGGCGCTTCTCATCAG+CGG | 0.641370 | 3.2:+76350757 | None:intergenic |
| GAATGCATATGTGAGGATTG+TGG | 0.642224 | 3.2:-76350735 | MS.gene81959:CDS |
| GTTGCCATTGGTTAAACCTG+TGG | 0.644205 | 3.2:-76352352 | MS.gene81959:CDS |
| CATGCACAAGAGTTCGTGTG+TGG | 0.649922 | 3.2:-76350470 | MS.gene81959:CDS |
| GGCGGCTATAAAACTTCACA+AGG | 0.650138 | 3.2:+76350352 | None:intergenic |
| GAGTCTGGCAACAAATTATG+TGG | 0.650290 | 3.2:+76352315 | None:intergenic |
| CACTTGATGGATGAACTCAT+CGG | 0.663477 | 3.2:+76352281 | None:intergenic |
| ACCGCTGAAGAAAATAGACA+TGG | 0.664992 | 3.2:-76352081 | MS.gene81959:CDS |
| GCCACGAGAATGCATATGTG+AGG | 0.667191 | 3.2:-76350742 | MS.gene81959:CDS |
| TGATGGATGAACTCATCGGA+AGG | 0.673548 | 3.2:+76352285 | None:intergenic |
| GTTTCCGTGTGATACAAATG+TGG | 0.700218 | 3.2:+76350841 | None:intergenic |
| TCTAGAAGTGGATCCCACCG+AGG | 0.721401 | 3.2:-76350705 | MS.gene81959:CDS |
| GGTTGGTAGCATGATCACTG+AGG | 0.753309 | 3.2:-76352205 | MS.gene81959:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAAAATTTTAATTTTTTT+TGG | - | chr3.2:76351567-76351586 | MS.gene81959:intron | 0.0% |
| !! | AATTTATGAAAAATGTTATT+TGG | + | chr3.2:76351835-76351854 | None:intergenic | 10.0% |
| !!! | ACAAAAATTAACTTTAAAAT+AGG | - | chr3.2:76351641-76351660 | MS.gene81959:intron | 10.0% |
| !!! | ATATGATTTTACTTTAAAAT+AGG | + | chr3.2:76351391-76351410 | None:intergenic | 10.0% |
| !!! | CAAAAATTAACTTTAAAATA+GGG | - | chr3.2:76351642-76351661 | MS.gene81959:intron | 10.0% |
| !!! | TATGATTTTACTTTAAAATA+GGG | + | chr3.2:76351390-76351409 | None:intergenic | 10.0% |
| !! | ATAAATTATTTGATTGTTCA+TGG | - | chr3.2:76351848-76351867 | MS.gene81959:intron | 15.0% |
| !! | GAAAATTTGGTATATTTATA+GGG | + | chr3.2:76351299-76351318 | None:intergenic | 15.0% |
| !! | TGAAAATTTGGTATATTTAT+AGG | + | chr3.2:76351300-76351319 | None:intergenic | 15.0% |
| !!! | GAAAAGTTGATATATTTATA+AGG | - | chr3.2:76351733-76351752 | MS.gene81959:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | - | chr3.2:76351673-76351692 | MS.gene81959:intron | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr3.2:76351692-76351673 | None:intergenic | 15.0% |
| !! | TGTAATAAATCATATGTGTA+TGG | + | chr3.2:76351109-76351128 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr3.2:76351363-76351382 | MS.gene81959:intron | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | + | chr3.2:76351382-76351363 | None:intergenic | 20.0% |
| !!! | AAGTTGAAGGAAAATTTTAA+AGG | - | chr3.2:76351701-76351720 | MS.gene81959:intron | 20.0% |
| !!! | AGTTGAAGGAAAATTTTAAA+GGG | - | chr3.2:76351702-76351721 | MS.gene81959:intron | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | - | chr3.2:76351672-76351691 | MS.gene81959:intron | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr3.2:76351691-76351672 | None:intergenic | 20.0% |
| ! | AAACTAACGAGAATAACAAA+TGG | - | chr3.2:76351008-76351027 | MS.gene81959:intron | 25.0% |
| ! | AAGACTATCCAATATTTGAT+TGG | - | chr3.2:76350778-76350797 | MS.gene81959:CDS | 25.0% |
| ! | AGATCAACAACAAATTTACT+TGG | - | chr3.2:76352384-76352403 | MS.gene81959:CDS | 25.0% |
| ! | ATAACATGTGATAGATAGAA+AGG | + | chr3.2:76351776-76351795 | None:intergenic | 25.0% |
| ! | TTATAGGGATTAAAAGTTGA+AGG | - | chr3.2:76351688-76351707 | MS.gene81959:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+CGG | + | chr3.2:76351331-76351350 | None:intergenic | 25.0% |
| !! | ATGTCATTTGTAATACTATG+TGG | + | chr3.2:76351079-76351098 | None:intergenic | 25.0% |
| !! | TAAAAGACACCTTCATATTT+TGG | - | chr3.2:76350885-76350904 | MS.gene81959:CDS | 25.0% |
| !! | TGTCATTTGTAATACTATGT+GGG | + | chr3.2:76351078-76351097 | None:intergenic | 25.0% |
| !!! | TCTAGGGTTAAATATGTTTT+TGG | - | chr3.2:76351272-76351291 | MS.gene81959:intron | 25.0% |
| AAAACCACAAGATAATCATC+TGG | + | chr3.2:76350553-76350572 | None:intergenic | 30.0% | |
| AAAACTTATCTCTATCTCTC+CGG | - | chr3.2:76350730-76350749 | MS.gene81959:CDS | 30.0% | |
| AACGACTGTTAAAAAAACAG+AGG | + | chr3.2:76351199-76351218 | None:intergenic | 30.0% | |
| ATAAACGAGCCAAAATATGA+AGG | + | chr3.2:76350897-76350916 | None:intergenic | 30.0% | |
| ATCACCAACATATTCTATCT+AGG | - | chr3.2:76351255-76351274 | MS.gene81959:intron | 30.0% | |
| GTTCAAATCACTAGAGAAAT+GGG | - | chr3.2:76350390-76350409 | MS.gene81959:CDS | 30.0% | |
| TAACCCTAGATAGAATATGT+TGG | + | chr3.2:76351262-76351281 | None:intergenic | 30.0% | |
| TATTTGATTGTTCATGGTGT+AGG | - | chr3.2:76351854-76351873 | MS.gene81959:intron | 30.0% | |
| TCACCAACATATTCTATCTA+GGG | - | chr3.2:76351256-76351275 | MS.gene81959:intron | 30.0% | |
| TGTTCAAATCACTAGAGAAA+TGG | - | chr3.2:76350389-76350408 | MS.gene81959:CDS | 30.0% | |
| TTAGTTTCAGGCAAATGTAT+TGG | + | chr3.2:76350995-76351014 | None:intergenic | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr3.2:76351344-76351363 | None:intergenic | 30.0% | |
| ! | AGATGATTATCTTGTGGTTT+TGG | - | chr3.2:76350552-76350571 | MS.gene81959:CDS | 30.0% |
| ! | TTCTATTTCTTTCTCCTTCA+AGG | - | chr3.2:76351796-76351815 | MS.gene81959:intron | 30.0% |
| ! | TTGTTATTCTCGTTAGTTTC+AGG | + | chr3.2:76351007-76351026 | None:intergenic | 30.0% |
| !! | AGTTGAAGGAAAATTTTAGC+GGG | + | chr3.2:76351330-76351349 | None:intergenic | 30.0% |
| !! | TCTTCTAGTTTCCTTAATCT+AGG | + | chr3.2:76352341-76352360 | None:intergenic | 30.0% |
| ATCCAATATTTGATTGGAGC+TGG | - | chr3.2:76350784-76350803 | MS.gene81959:CDS | 35.0% | |
| ATTGTTCATGGTGTAGGATT+TGG | - | chr3.2:76351860-76351879 | MS.gene81959:intron | 35.0% | |
| CCAAACATGGATAAACAAGT+TGG | - | chr3.2:76350612-76350631 | MS.gene81959:CDS | 35.0% | |
| GACATATGCATAAACCTTGA+AGG | + | chr3.2:76351813-76351832 | None:intergenic | 35.0% | |
| GCGGGACTAAAATGAAAATT+TGG | + | chr3.2:76351312-76351331 | None:intergenic | 35.0% | |
| TAGAGTTCTTGATTAGACGA+TGG | - | chr3.2:76352246-76352265 | MS.gene81959:CDS | 35.0% | |
| TGTACACAAAACCCATGTAT+GGG | + | chr3.2:76351899-76351918 | None:intergenic | 35.0% | |
| TTCACAAAATGTGTTGCCAT+TGG | - | chr3.2:76350414-76350433 | MS.gene81959:CDS | 35.0% | |
| TTGTTCATGGTGTAGGATTT+GGG | - | chr3.2:76351861-76351880 | MS.gene81959:intron | 35.0% | |
| TTTATCCATGTTTGGTACGT+AGG | + | chr3.2:76350607-76350626 | None:intergenic | 35.0% | |
| ! | AAAAATGATCGAAGAAGCGT+GGG | + | chr3.2:76352172-76352191 | None:intergenic | 35.0% |
| ! | AATCTTGTGCTGCATCATTT+TGG | + | chr3.2:76352114-76352133 | None:intergenic | 35.0% |
| ! | ACATGGATAAACAAGTTGGA+TGG | - | chr3.2:76350616-76350635 | MS.gene81959:CDS | 35.0% |
| ! | ATAAACAAGTTGGATGGAGT+TGG | - | chr3.2:76350622-76350641 | MS.gene81959:CDS | 35.0% |
| ! | CCAACTTGTTTATCCATGTT+TGG | + | chr3.2:76350615-76350634 | None:intergenic | 35.0% |
| ! | TCCATGTCTATTTTCTTCAG+CGG | + | chr3.2:76350701-76350720 | None:intergenic | 35.0% |
| ! | TTGAACACCTCTTTCTTTTG+AGG | + | chr3.2:76350376-76350395 | None:intergenic | 35.0% |
| !! | CTTCTTCGATCATTTTTCTG+CGG | - | chr3.2:76352175-76352194 | MS.gene81959:CDS | 35.0% |
| !!! | GATTATCTTGTGGTTTTGGT+TGG | - | chr3.2:76350556-76350575 | MS.gene81959:CDS | 35.0% |
| ACCGAAAACAACCCATACAT+GGG | - | chr3.2:76351885-76351904 | MS.gene81959:intron | 40.0% | |
| ACCGCTGAAGAAAATAGACA+TGG | - | chr3.2:76350697-76350716 | MS.gene81959:CDS | 40.0% | |
| ATATTTGATTGGAGCTGGCA+TGG | - | chr3.2:76350789-76350808 | MS.gene81959:CDS | 40.0% | |
| CATGCACATATCAACTCTAC+CGG | + | chr3.2:76350752-76350771 | None:intergenic | 40.0% | |
| CTTGATTAGACGATGGAGAT+TGG | - | chr3.2:76352253-76352272 | MS.gene81959:CDS | 40.0% | |
| GAAAAATGATCGAAGAAGCG+TGG | + | chr3.2:76352173-76352192 | None:intergenic | 40.0% | |
| GAATGCATATGTGAGGATTG+TGG | - | chr3.2:76352043-76352062 | MS.gene81959:CDS | 40.0% | |
| GAGTCTGGCAACAAATTATG+TGG | + | chr3.2:76350466-76350485 | None:intergenic | 40.0% | |
| GCTTCCAGATGATTATCTTG+TGG | - | chr3.2:76350546-76350565 | MS.gene81959:CDS | 40.0% | |
| GTGTACACAAAACCCATGTA+TGG | + | chr3.2:76351900-76351919 | None:intergenic | 40.0% | |
| GTTTCCGTGTGATACAAATG+TGG | + | chr3.2:76351940-76351959 | None:intergenic | 40.0% | |
| TACCGAAAACAACCCATACA+TGG | - | chr3.2:76351884-76351903 | MS.gene81959:intron | 40.0% | |
| TGCCAGCTCCAATCAAATAT+TGG | + | chr3.2:76350789-76350808 | None:intergenic | 40.0% | |
| TTTGTATCACACGGAAACCT+AGG | - | chr3.2:76351942-76351961 | MS.gene81959:intron | 40.0% | |
| ! | CACTTGATGGATGAACTCAT+CGG | + | chr3.2:76350500-76350519 | None:intergenic | 40.0% |
| ! | TGTGGAAAAGCTTCTAGAAG+TGG | - | chr3.2:76352061-76352080 | MS.gene81959:CDS | 40.0% |
| !! | ACCCATGTATGGGTTGTTTT+CGG | + | chr3.2:76351889-76351908 | None:intergenic | 40.0% |
| AAATGTGGCTCGCTCTTGAA+AGG | + | chr3.2:76351925-76351944 | None:intergenic | 45.0% | |
| ATGGAGATTGGAGAAGCTTG+AGG | - | chr3.2:76352265-76352284 | MS.gene81959:CDS | 45.0% | |
| CATTGCCTACGTACCAAACA+TGG | - | chr3.2:76350599-76350618 | MS.gene81959:CDS | 45.0% | |
| CGAGCCACATTTGTATCACA+CGG | - | chr3.2:76351933-76351952 | MS.gene81959:intron | 45.0% | |
| GTGGACTTGCACCTAGATTA+AGG | - | chr3.2:76352327-76352346 | MS.gene81959:CDS | 45.0% | |
| TATCACACGGAAACCTAGGT+AGG | - | chr3.2:76351946-76351965 | MS.gene81959:intron | 45.0% | |
| TCCATCATGCATCAAGTGAG+CGG | + | chr3.2:76352144-76352163 | None:intergenic | 45.0% | |
| TCCTCACATATGCATTCTCG+TGG | + | chr3.2:76352040-76352059 | None:intergenic | 45.0% | |
| TCCTCCACAGGTTTAACCAA+TGG | + | chr3.2:76350433-76350452 | None:intergenic | 45.0% | |
| TCTCTTTAGCCAACCTACCT+AGG | + | chr3.2:76351962-76351981 | None:intergenic | 45.0% | |
| TGAGTTCATCCATCAAGTGC+AGG | - | chr3.2:76350501-76350520 | MS.gene81959:CDS | 45.0% | |
| TGGAGATTGGAGAAGCTTGA+GGG | - | chr3.2:76352266-76352285 | MS.gene81959:CDS | 45.0% | |
| TGGTTCAAGTCTCACACCAT+GGG | - | chr3.2:76350654-76350673 | MS.gene81959:CDS | 45.0% | |
| TTAAACCTGTGGAGGAATGC+TGG | - | chr3.2:76350437-76350456 | MS.gene81959:CDS | 45.0% | |
| ! | GTTGCCATTGGTTAAACCTG+TGG | - | chr3.2:76350426-76350445 | MS.gene81959:CDS | 45.0% |
| ! | TGATGGATGAACTCATCGGA+AGG | + | chr3.2:76350496-76350515 | None:intergenic | 45.0% |
| !! | CTTCGATCATTTTTCTGCGG+TGG | - | chr3.2:76352178-76352197 | MS.gene81959:CDS | 45.0% |
| !!! | GTGCTGCATCATTTTGGCTA+TGG | + | chr3.2:76352108-76352127 | None:intergenic | 45.0% |
| !!! | AAAAAATTCTAAATTTTTTT+GGG | + | chr3.2:76351475-76351494 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+TGG | - | chr3.2:76351514-76351533 | MS.gene81959:intron | 5.0% |
| !!! | TAAAAAATTCTAAATTTTTT+TGG | + | chr3.2:76351476-76351495 | None:intergenic | 5.0% |
| ACACGGAAACCTAGGTAGGT+TGG | - | chr3.2:76351950-76351969 | MS.gene81959:intron | 50.0% | |
| CATGCACAAGAGTTCGTGTG+TGG | - | chr3.2:76352308-76352327 | MS.gene81959:CDS | 50.0% | |
| CCATCATGCATCAAGTGAGC+GGG | + | chr3.2:76352143-76352162 | None:intergenic | 50.0% | |
| CTGGTTCAAGTCTCACACCA+TGG | - | chr3.2:76350653-76350672 | MS.gene81959:CDS | 50.0% | |
| CTTGAGGGTTTGACAAGCGA+AGG | - | chr3.2:76352281-76352300 | MS.gene81959:CDS | 50.0% | |
| GCCACGAGAATGCATATGTG+AGG | - | chr3.2:76352036-76352055 | MS.gene81959:CDS | 50.0% | |
| TCGGAAGGTAGTGATGAGTC+TGG | + | chr3.2:76350481-76350500 | None:intergenic | 50.0% | |
| ! | GCCATTGGTTAAACCTGTGG+AGG | - | chr3.2:76350429-76350448 | MS.gene81959:CDS | 50.0% |
| ! | GGTAGGTTGGCTAAAGAGAG+AGG | - | chr3.2:76351963-76351982 | MS.gene81959:intron | 50.0% |
| ! | GTCTCACACCATGGGCTATA+TGG | - | chr3.2:76350662-76350681 | MS.gene81959:CDS | 50.0% |
| !! | GGTTGGTAGCATGATCACTG+AGG | - | chr3.2:76350573-76350592 | MS.gene81959:CDS | 50.0% |
| CCCGCTCACTTGATGCATGA+TGG | - | chr3.2:76352140-76352159 | MS.gene81959:CDS | 55.0% | |
| CTCAGCCGTTCGATCTCTCA+GGG | + | chr3.2:76350527-76350546 | None:intergenic | 55.0% | |
| CTCGTACTTGCACGCGTATG+CGG | - | chr3.2:76351990-76352009 | MS.gene81959:CDS | 55.0% | |
| GAGCGTGACCATATAGCCCA+TGG | + | chr3.2:76350673-76350692 | None:intergenic | 55.0% | |
| GGGCTATATGGTCACGCTCT+TGG | - | chr3.2:76350674-76350693 | MS.gene81959:CDS | 55.0% | |
| TCGTACTTGCACGCGTATGC+GGG | - | chr3.2:76351991-76352010 | MS.gene81959:CDS | 55.0% | |
| TCTAGAAGTGGATCCCACCG+AGG | - | chr3.2:76352073-76352092 | MS.gene81959:CDS | 55.0% | |
| TCTGCGGTGGCACAACGTAT+TGG | - | chr3.2:76352191-76352210 | MS.gene81959:CDS | 55.0% | |
| AGTGGATCCCACCGAGGCTA+TGG | - | chr3.2:76352079-76352098 | MS.gene81959:CDS | 60.0% | |
| ATGGCCACCATAGCCTCGGT+GGG | + | chr3.2:76352089-76352108 | None:intergenic | 60.0% | |
| CGCATACGCGTGCAAGTACG+AGG | + | chr3.2:76351992-76352011 | None:intergenic | 60.0% | |
| CTCGTGGCGCTTCTCATCAG+CGG | + | chr3.2:76352024-76352043 | None:intergenic | 60.0% | |
| CTCTCAGGGCCTGCACTTGA+TGG | + | chr3.2:76350513-76350532 | None:intergenic | 60.0% | |
| GATGGAGTTGGCGACGAGAC+TGG | - | chr3.2:76350634-76350653 | MS.gene81959:CDS | 60.0% | |
| GCAGGCCCTGAGAGATCGAA+CGG | - | chr3.2:76350519-76350538 | MS.gene81959:CDS | 60.0% | |
| GCTCAGCCGTTCGATCTCTC+AGG | + | chr3.2:76350528-76350547 | None:intergenic | 60.0% | |
| GGCTATGGCCACCATAGCCT+CGG | + | chr3.2:76352093-76352112 | None:intergenic | 60.0% | |
| TATGGCCACCATAGCCTCGG+TGG | + | chr3.2:76352090-76352109 | None:intergenic | 60.0% | |
| GGATCCCACCGAGGCTATGG+TGG | - | chr3.2:76352082-76352101 | MS.gene81959:CDS | 65.0% | |
| GGCTGCCAGCATTCCTCCAC+AGG | + | chr3.2:76350445-76350464 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 76350367 | 76352433 | 76350367 | ID=MS.gene81959 |
| chr3.2 | mRNA | 76350367 | 76352433 | 76350367 | ID=MS.gene81959.t1;Parent=MS.gene81959 |
| chr3.2 | exon | 76351990 | 76352433 | 76351990 | ID=MS.gene81959.t1.exon1;Parent=MS.gene81959.t1 |
| chr3.2 | CDS | 76351990 | 76352433 | 76351990 | ID=cds.MS.gene81959.t1;Parent=MS.gene81959.t1 |
| chr3.2 | exon | 76350367 | 76350924 | 76350367 | ID=MS.gene81959.t1.exon2;Parent=MS.gene81959.t1 |
| chr3.2 | CDS | 76350367 | 76350924 | 76350367 | ID=cds.MS.gene81959.t1;Parent=MS.gene81959.t1 |
| Gene Sequence |
| Protein sequence |
