Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82275.t1 | XP_013459167.1 | 97.5 | 366 | 8 | 1 | 1 | 366 | 1 | 365 | 5.70E-199 | 703.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82275.t1 | A0A072V4V0 | 97.5 | 366 | 8 | 1 | 1 | 366 | 1 | 365 | 4.1e-199 | 703.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene82275 | 0.836994 | 6.75E-57 | -1.69E-46 |
| MS.gene050297 | MS.gene82275 | 0.820629 | 6.20E-53 | -1.69E-46 |
| MS.gene051629 | MS.gene82275 | 0.808014 | 3.81E-50 | -1.69E-46 |
| MS.gene052367 | MS.gene82275 | 0.817513 | 3.17E-52 | -1.69E-46 |
| MS.gene055957 | MS.gene82275 | 0.822314 | 2.53E-53 | -1.69E-46 |
| MS.gene056041 | MS.gene82275 | 0.814473 | 1.51E-51 | -1.69E-46 |
| MS.gene056042 | MS.gene82275 | 0.822089 | 2.85E-53 | -1.69E-46 |
| MS.gene058196 | MS.gene82275 | 0.839015 | 2.04E-57 | -1.69E-46 |
| MS.gene058197 | MS.gene82275 | 0.83333 | 5.68E-56 | -1.69E-46 |
| MS.gene058198 | MS.gene82275 | 0.83546 | 1.66E-56 | -1.69E-46 |
| MS.gene059300 | MS.gene82275 | 0.828119 | 1.07E-54 | -1.69E-46 |
| MS.gene060473 | MS.gene82275 | 0.803321 | 3.69E-49 | -1.69E-46 |
| MS.gene060565 | MS.gene82275 | 0.804504 | 2.09E-49 | -1.69E-46 |
| MS.gene06057 | MS.gene82275 | 0.833807 | 4.31E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82275.t1 | MTR_3g028600 | 97.541 | 366 | 8 | 1 | 1 | 366 | 1 | 365 | 0.0 | 720 |
| MS.gene82275.t1 | MTR_7g092270 | 35.165 | 273 | 132 | 9 | 1 | 247 | 1 | 254 | 2.54e-27 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82275.t1 | AT3G52110 | 42.246 | 374 | 161 | 13 | 1 | 362 | 1 | 331 | 2.96e-69 | 221 |
| MS.gene82275.t1 | AT3G52110 | 39.303 | 402 | 161 | 13 | 1 | 362 | 1 | 359 | 1.28e-65 | 212 |
| MS.gene82275.t1 | AT3G52110 | 40.950 | 337 | 129 | 9 | 1 | 298 | 1 | 306 | 1.02e-59 | 196 |
| MS.gene82275.t1 | AT3G52110 | 42.955 | 291 | 125 | 8 | 1 | 281 | 1 | 260 | 1.11e-55 | 183 |
Find 75 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAAATCCTCTGCTGTTT+TGG | 0.155399 | 3.4:-22529320 | None:intergenic |
| ACAAGTACCTTCTAATTATT+TGG | 0.160340 | 3.4:-22529781 | None:intergenic |
| TGAAAACCAAAATCCGAATT+TGG | 0.214237 | 3.4:+22529986 | MS.gene82275:CDS |
| TTGGAGGGGATGTGTGTTAA+AGG | 0.219732 | 3.4:+22530371 | MS.gene82275:CDS |
| CAAAAGCCTTGGACATGTTT+TGG | 0.224647 | 3.4:+22531717 | MS.gene82275:CDS |
| GAGTAACCAAATTCGGATTT+TGG | 0.233277 | 3.4:-22529992 | None:intergenic |
| TGAATCTGAATTTATCATCT+TGG | 0.294904 | 3.4:-22529953 | None:intergenic |
| TGACTTGATCAAAGACTTCA+TGG | 0.311170 | 3.4:-22530027 | None:intergenic |
| CAGATCACCAAGTCCTTTCA+AGG | 0.337664 | 3.4:+22529342 | MS.gene82275:CDS |
| AATTGAGGAGTAACCAAATT+CGG | 0.341390 | 3.4:-22529999 | None:intergenic |
| AAGGAAACCATTGCTTGAAA+TGG | 0.343999 | 3.4:+22530334 | MS.gene82275:CDS |
| GAATCTGAATTTATCATCTT+GGG | 0.347711 | 3.4:-22529952 | None:intergenic |
| TCTTCTTCTTTACTCTCTAC+AGG | 0.348257 | 3.4:-22530242 | None:intergenic |
| TTCTCCAAGTCAAGAGTTAT+AGG | 0.377448 | 3.4:-22531029 | None:intergenic |
| AGCTTCATCGTCATTGTTGT+TGG | 0.394893 | 3.4:-22528899 | None:intergenic |
| AGGTTCCAGATCCCGGCTAA+TGG | 0.435543 | 3.4:+22531151 | MS.gene82275:CDS |
| TCTGTGATTTGATTCAGAAT+AGG | 0.438456 | 3.4:-22530152 | None:intergenic |
| ACATACCATTAGCCGGGATC+TGG | 0.445431 | 3.4:-22531156 | None:intergenic |
| TGGATAGAAGAGAGAAAGAA+AGG | 0.449130 | 3.4:+22530315 | MS.gene82275:CDS |
| AGGAAACCATTGCTTGAAAT+GGG | 0.454113 | 3.4:+22530335 | MS.gene82275:CDS |
| GAAAGAGTTGATTTCAATGA+AGG | 0.454599 | 3.4:-22530104 | None:intergenic |
| AGACAAGAAGTCGACAAACT+TGG | 0.455479 | 3.4:-22528863 | None:intergenic |
| TTGAAAACCTTGAAAGGACT+TGG | 0.458556 | 3.4:-22529349 | None:intergenic |
| TGGAGGGGATGTGTGTTAAA+GGG | 0.467012 | 3.4:+22530372 | MS.gene82275:CDS |
| CTTCTTCTTTACTCTCTACA+GGG | 0.471523 | 3.4:-22530241 | None:intergenic |
| GCCTTACCCATTTCAAGCAA+TGG | 0.476077 | 3.4:-22530341 | None:intergenic |
| AATGGGTAAGGCTGAAAGGT+TGG | 0.476335 | 3.4:+22530352 | MS.gene82275:CDS |
| AGAGACTGGCATTAAGAGCT+AGG | 0.485226 | 3.4:+22530192 | MS.gene82275:CDS |
| GACCTCGCCGGTGAACGCTT+TGG | 0.485298 | 3.4:+22530286 | MS.gene82275:CDS |
| CCTCAAAAGGTTCCAGATCC+CGG | 0.489613 | 3.4:+22531144 | MS.gene82275:CDS |
| GAGATGGGAAAATCAAAAGA+AGG | 0.491493 | 3.4:+22529904 | MS.gene82275:intron |
| TGGAGAATGTGAGGCAAAAG+AGG | 0.511335 | 3.4:+22531045 | MS.gene82275:CDS |
| GGTGAACGCTTTGGCAGAGT+TGG | 0.511955 | 3.4:+22530295 | MS.gene82275:CDS |
| GACTTCATGGACTTAAATTG+AGG | 0.512386 | 3.4:-22530014 | None:intergenic |
| AACTCTGCCAAAGCGTTCAC+CGG | 0.518508 | 3.4:-22530293 | None:intergenic |
| TGGAACCCGCGAAAATCGAT+TGG | 0.518768 | 3.4:+22528785 | MS.gene82275:CDS |
| CTGCAATGAATTGAAGAGAC+TGG | 0.520098 | 3.4:+22530178 | MS.gene82275:CDS |
| TTGGGGAGAAGATGATGAAA+GGG | 0.527318 | 3.4:-22529934 | None:intergenic |
| CTAATTATTTGGTCACCACT+TGG | 0.527403 | 3.4:-22529770 | None:intergenic |
| TGGAAGAGAAACAAAAGCCT+TGG | 0.531913 | 3.4:+22531706 | MS.gene82275:CDS |
| ACAACAATGACGATGAAGCT+TGG | 0.532137 | 3.4:+22528902 | MS.gene82275:CDS |
| ACCATTGCTTGAAATGGGTA+AGG | 0.532730 | 3.4:+22530340 | MS.gene82275:CDS |
| GGGTAAGGCTGAAAGGTTGG+AGG | 0.534211 | 3.4:+22530355 | MS.gene82275:CDS |
| GTGGTGACCAAATAATTAGA+AGG | 0.535372 | 3.4:+22529774 | MS.gene82275:CDS |
| CAAGAATTGAAAACCTTGAA+AGG | 0.537468 | 3.4:-22529355 | None:intergenic |
| TGTAGAGAGTAAAGAAGAAG+AGG | 0.537526 | 3.4:+22530244 | MS.gene82275:CDS |
| GGTTAGGACATACCATTAGC+CGG | 0.538912 | 3.4:-22531163 | None:intergenic |
| AATAACCCTAACCCCTCAAA+AGG | 0.543271 | 3.4:+22531131 | MS.gene82275:CDS |
| GATGCCTATAACTCTTGACT+TGG | 0.544195 | 3.4:+22531025 | MS.gene82275:CDS |
| GACAAGAAGTCGACAAACTT+GGG | 0.549866 | 3.4:-22528862 | None:intergenic |
| CTTGGGGAGAAGATGATGAA+AGG | 0.552832 | 3.4:-22529935 | None:intergenic |
| GAGACTGGCATTAAGAGCTA+GGG | 0.555156 | 3.4:+22530193 | MS.gene82275:CDS |
| AATCTGAATTTATCATCTTG+GGG | 0.559370 | 3.4:-22529951 | None:intergenic |
| CAGCTTGATAATGTTGTGCA+AGG | 0.574727 | 3.4:-22531749 | None:intergenic |
| GTTAGGACATACCATTAGCC+GGG | 0.576783 | 3.4:-22531162 | None:intergenic |
| CTCTTGACTTGGAGAATGTG+AGG | 0.588746 | 3.4:+22531036 | MS.gene82275:CDS |
| CGACAAACTTGGGTGCGTTG+AGG | 0.594070 | 3.4:-22528852 | None:intergenic |
| AGATGGGAAAATCAAAAGAA+GGG | 0.599458 | 3.4:+22529905 | MS.gene82275:CDS |
| GGAGAATGTGAGGCAAAAGA+GGG | 0.601146 | 3.4:+22531046 | MS.gene82275:CDS |
| GGTAAGGCTGAAAGGTTGGA+GGG | 0.606044 | 3.4:+22530356 | MS.gene82275:CDS |
| TGACACATTGCAAGACAGTA+CGG | 0.610797 | 3.4:+22530076 | MS.gene82275:CDS |
| GCAAAACAAGGAAGTTGCAA+AGG | 0.614584 | 3.4:+22531643 | MS.gene82275:CDS |
| TTGAAATGGGTAAGGCTGAA+AGG | 0.620447 | 3.4:+22530348 | MS.gene82275:CDS |
| AGGGTTATCATGCAGGAGAG+AGG | 0.624181 | 3.4:+22531602 | MS.gene82275:intron |
| GAAGAACCAAAACATGTCCA+AGG | 0.624877 | 3.4:-22531723 | None:intergenic |
| TGCCAAAGCGTTCACCGGCG+AGG | 0.627171 | 3.4:-22530288 | None:intergenic |
| TTATCAGAAAATCTTCCAAG+TGG | 0.629968 | 3.4:+22529755 | MS.gene82275:CDS |
| GTAAGGCTGAAAGGTTGGAG+GGG | 0.641584 | 3.4:+22530357 | MS.gene82275:CDS |
| TGGGGAGAAGATGATGAAAG+GGG | 0.644916 | 3.4:-22529933 | None:intergenic |
| TAAAGAAGTTGAGCAAAACA+AGG | 0.647922 | 3.4:+22531631 | MS.gene82275:CDS |
| CAATCACCCCAAAACAGCAG+AGG | 0.670196 | 3.4:+22529312 | MS.gene82275:CDS |
| GGAGAAGATGATGAAAGGGG+TGG | 0.706516 | 3.4:-22529930 | None:intergenic |
| TGTGCACGAGAAGACCTCGC+CGG | 0.712375 | 3.4:+22530274 | MS.gene82275:CDS |
| ATTGTGCAGAAGACCTGACG+AGG | 0.713526 | 3.4:+22530995 | MS.gene82275:intron |
| CACATTGCAAGACAGTACGG+AGG | 0.751329 | 3.4:+22530079 | MS.gene82275:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTATAAAATTTTAGCT+AGG | + | chr3.4:22531384-22531403 | MS.gene82275:intron | 10.0% |
| !!! | TTTCTATTAATTTTTGTTTT+GGG | + | chr3.4:22529697-22529716 | MS.gene82275:intron | 10.0% |
| !! | GATTAAACTATTCATATTTA+TGG | + | chr3.4:22531191-22531210 | MS.gene82275:intron | 15.0% |
| !! | TATGAATAGTTTAATCTTAT+AGG | - | chr3.4:22531187-22531206 | None:intergenic | 15.0% |
| !!! | AAGTTTTGATTTTTCTTAAT+TGG | + | chr3.4:22529213-22529232 | MS.gene82275:intron | 15.0% |
| !!! | AGATTTTCTGATAAATAAAA+TGG | - | chr3.4:22529749-22529768 | None:intergenic | 15.0% |
| !!! | AGTTTTGATTTTTCTTAATT+GGG | + | chr3.4:22529214-22529233 | MS.gene82275:intron | 15.0% |
| !!! | ATTGTTTGGATTTTAATTAA+TGG | + | chr3.4:22529243-22529262 | MS.gene82275:intron | 15.0% |
| !!! | CTTTCTATTAATTTTTGTTT+TGG | + | chr3.4:22529696-22529715 | MS.gene82275:intron | 15.0% |
| !!! | TTGTTTGGATTTTAATTAAT+GGG | + | chr3.4:22529244-22529263 | MS.gene82275:intron | 15.0% |
| !! | AAAAATATTACAATCTCTGA+TGG | + | chr3.4:22531686-22531705 | MS.gene82275:CDS | 20.0% |
| !! | AAACTATTTAATGTGTCAAT+TGG | + | chr3.4:22531415-22531434 | MS.gene82275:intron | 20.0% |
| !! | ATAAAGAAACACAGATTATA+AGG | - | chr3.4:22530429-22530448 | None:intergenic | 20.0% |
| !! | ATAGTTTAATCTTATAGGTT+AGG | - | chr3.4:22531182-22531201 | None:intergenic | 20.0% |
| !! | TAAAGAAACACAGATTATAA+GGG | - | chr3.4:22530428-22530447 | None:intergenic | 20.0% |
| !! | TATACAAAAATGATTAACCA+AGG | - | chr3.4:22530967-22530986 | None:intergenic | 20.0% |
| !! | TTTAATATTGCTATAGAGAT+GGG | + | chr3.4:22529889-22529908 | MS.gene82275:intron | 20.0% |
| !!! | AAAGTTTGGATTTTTATTAG+TGG | + | chr3.4:22529129-22529148 | MS.gene82275:intron | 20.0% |
| !!! | AAGTTTGGATTTTTAGTAAT+TGG | + | chr3.4:22529047-22529066 | MS.gene82275:intron | 20.0% |
| !!! | AAGTTTGGATTTTTATTAGT+GGG | + | chr3.4:22529130-22529149 | MS.gene82275:intron | 20.0% |
| !!! | AATTTTGCATTTTTCTCAAT+TGG | + | chr3.4:22528964-22528983 | MS.gene82275:intron | 20.0% |
| !!! | AGTTTGGATTTTTAGTAATT+GGG | + | chr3.4:22529048-22529067 | MS.gene82275:intron | 20.0% |
| !!! | ATTTTGCATTTTTCTCAATT+GGG | + | chr3.4:22528965-22528984 | MS.gene82275:intron | 20.0% |
| !!! | CTTAGTTATTTTATAGCTTA+TGG | + | chr3.4:22529515-22529534 | MS.gene82275:intron | 20.0% |
| !!! | GCATTTTAGAAGATTATAAA+GGG | - | chr3.4:22531535-22531554 | None:intergenic | 20.0% |
| !!! | TGCATTTTAGAAGATTATAA+AGG | - | chr3.4:22531536-22531555 | None:intergenic | 20.0% |
| ! | AATCTGAATTTATCATCTTG+GGG | - | chr3.4:22529954-22529973 | None:intergenic | 25.0% |
| ! | ACAAGTACCTTCTAATTATT+TGG | - | chr3.4:22529784-22529803 | None:intergenic | 25.0% |
| ! | AGATAATTTCGTATCTAACT+TGG | - | chr3.4:22530796-22530815 | None:intergenic | 25.0% |
| ! | AGCAAAATCTCAAATTTCTA+TGG | - | chr3.4:22529837-22529856 | None:intergenic | 25.0% |
| ! | ATAGAAAGCAACATAGAAAA+AGG | - | chr3.4:22529609-22529628 | None:intergenic | 25.0% |
| ! | ATAGTTTGAGCTTCTAATTA+TGG | + | chr3.4:22529405-22529424 | MS.gene82275:intron | 25.0% |
| ! | CAACACTTAAACTAAGATAA+CGG | - | chr3.4:22530714-22530733 | None:intergenic | 25.0% |
| ! | GAATCTGAATTTATCATCTT+GGG | - | chr3.4:22529955-22529974 | None:intergenic | 25.0% |
| ! | GTTAGATACGAAATTATCTT+TGG | + | chr3.4:22530797-22530816 | MS.gene82275:intron | 25.0% |
| ! | GTTTAATATTGCTATAGAGA+TGG | + | chr3.4:22529888-22529907 | MS.gene82275:intron | 25.0% |
| ! | TAGAAAGCAACATAGAAAAA+GGG | - | chr3.4:22529608-22529627 | None:intergenic | 25.0% |
| ! | TCTCAAATTTCTATGGAAAA+AGG | - | chr3.4:22529830-22529849 | None:intergenic | 25.0% |
| ! | TGAATCTGAATTTATCATCT+TGG | - | chr3.4:22529956-22529975 | None:intergenic | 25.0% |
| ! | TTATCTTTGTATAACTTCAG+TGG | + | chr3.4:22530827-22530846 | MS.gene82275:intron | 25.0% |
| !! | AATTATGGTGTTAATTTAGC+TGG | + | chr3.4:22529420-22529439 | MS.gene82275:intron | 25.0% |
| !! | AGATTGCATTTTTCTCAATT+GGG | + | chr3.4:22529017-22529036 | MS.gene82275:intron | 25.0% |
| !! | ATGGATTATTTACAAGACAA+TGG | + | chr3.4:22531210-22531229 | MS.gene82275:intron | 25.0% |
| !! | TAGATTGCATTTTTCTCAAT+TGG | + | chr3.4:22529016-22529035 | MS.gene82275:intron | 25.0% |
| !! | TGATTGCATTTTTCACAATT+GGG | + | chr3.4:22529183-22529202 | MS.gene82275:intron | 25.0% |
| !! | TTGATTGCATTTTTCACAAT+TGG | + | chr3.4:22529182-22529201 | MS.gene82275:intron | 25.0% |
| !!! | ATAGTTCTGAGCTTTATTTA+TGG | + | chr3.4:22529486-22529505 | MS.gene82275:intron | 25.0% |
| !!! | ATATTTTTGTTGTTTTGTGC+TGG | - | chr3.4:22531674-22531693 | None:intergenic | 25.0% |
| !!! | TAATTGGGTTTGTTATTGTT+TGG | + | chr3.4:22529229-22529248 | MS.gene82275:intron | 25.0% |
| AAAACCAAAGTTAGAAACTG+AGG | - | chr3.4:22529647-22529666 | None:intergenic | 30.0% | |
| AATTGAGGAGTAACCAAATT+CGG | - | chr3.4:22530002-22530021 | None:intergenic | 30.0% | |
| AGATGGGAAAATCAAAAGAA+GGG | + | chr3.4:22529905-22529924 | MS.gene82275:CDS | 30.0% | |
| ATCCATCAATGAATCTCTTT+AGG | - | chr3.4:22531289-22531308 | None:intergenic | 30.0% | |
| CAAGAATTGAAAACCTTGAA+AGG | - | chr3.4:22529358-22529377 | None:intergenic | 30.0% | |
| CAAGGAAATAGTACAAGAAT+TGG | - | chr3.4:22530949-22530968 | None:intergenic | 30.0% | |
| CAATTCTTGTACTATTTCCT+TGG | + | chr3.4:22530947-22530966 | MS.gene82275:intron | 30.0% | |
| GATTTCATGAACTGACATTA+AGG | + | chr3.4:22531306-22531325 | MS.gene82275:intron | 30.0% | |
| TAAAGAAGTTGAGCAAAACA+AGG | + | chr3.4:22531631-22531650 | MS.gene82275:CDS | 30.0% | |
| TCGATTGGAAAAATCTAGAA+TGG | + | chr3.4:22528800-22528819 | MS.gene82275:CDS | 30.0% | |
| TCTGTGATTTGATTCAGAAT+AGG | - | chr3.4:22530155-22530174 | None:intergenic | 30.0% | |
| TGAAAACCAAAATCCGAATT+TGG | + | chr3.4:22529986-22530005 | MS.gene82275:CDS | 30.0% | |
| TTATCAGAAAATCTTCCAAG+TGG | + | chr3.4:22529755-22529774 | MS.gene82275:CDS | 30.0% | |
| TTTAATGTGTCAATTGGAAG+AGG | + | chr3.4:22531421-22531440 | MS.gene82275:intron | 30.0% | |
| TTTACGATCAAAATCGATGT+AGG | + | chr3.4:22530527-22530546 | MS.gene82275:intron | 30.0% | |
| ! | ACATTACTACTTCTCTAAAG+AGG | - | chr3.4:22531560-22531579 | None:intergenic | 30.0% |
| ! | CATTACTACTTCTCTAAAGA+GGG | - | chr3.4:22531559-22531578 | None:intergenic | 30.0% |
| ! | GAAAGAGTTGATTTCAATGA+AGG | - | chr3.4:22530107-22530126 | None:intergenic | 30.0% |
| !! | ATTTTTCCAATCGATTTTCG+CGG | - | chr3.4:22528794-22528813 | None:intergenic | 30.0% |
| !!! | AGATTGCTTTTTTCTCAACT+GGG | + | chr3.4:22529100-22529119 | MS.gene82275:intron | 30.0% |
| !!! | TAGATTGCTTTTTTCTCAAC+TGG | + | chr3.4:22529099-22529118 | MS.gene82275:intron | 30.0% |
| AACCTATAAAACACTGACAC+TGG | - | chr3.4:22530752-22530771 | None:intergenic | 35.0% | |
| AAGGAAACCATTGCTTGAAA+TGG | + | chr3.4:22530334-22530353 | MS.gene82275:CDS | 35.0% | |
| AAGGTAGTTGCTCCATATTA+AGG | + | chr3.4:22531325-22531344 | MS.gene82275:intron | 35.0% | |
| ACCACGTTTAATGTGTCAAT+TGG | + | chr3.4:22531456-22531475 | MS.gene82275:intron | 35.0% | |
| ACTATGAACACCAGCTAAAT+TGG | - | chr3.4:22529471-22529490 | None:intergenic | 35.0% | |
| AGCCTAAAGAGATTCATTGA+TGG | + | chr3.4:22531284-22531303 | MS.gene82275:intron | 35.0% | |
| AGGAAACCATTGCTTGAAAT+GGG | + | chr3.4:22530335-22530354 | MS.gene82275:CDS | 35.0% | |
| AGGTAGTTGCTCCATATTAA+GGG | + | chr3.4:22531326-22531345 | MS.gene82275:intron | 35.0% | |
| ATAAAACACTGACACTGGTA+TGG | - | chr3.4:22530747-22530766 | None:intergenic | 35.0% | |
| CAATTGGGTTTGTCAAAGTT+TGG | + | chr3.4:22529032-22529051 | MS.gene82275:intron | 35.0% | |
| CTAATTATTTGGTCACCACT+TGG | - | chr3.4:22529773-22529792 | None:intergenic | 35.0% | |
| CTATGAACACCAGCTAAATT+GGG | - | chr3.4:22529470-22529489 | None:intergenic | 35.0% | |
| CTTCTTCTTTACTCTCTACA+GGG | - | chr3.4:22530244-22530263 | None:intergenic | 35.0% | |
| GACTTCATGGACTTAAATTG+AGG | - | chr3.4:22530017-22530036 | None:intergenic | 35.0% | |
| GAGATGGGAAAATCAAAAGA+AGG | + | chr3.4:22529904-22529923 | MS.gene82275:intron | 35.0% | |
| GTGGTGACCAAATAATTAGA+AGG | + | chr3.4:22529774-22529793 | MS.gene82275:CDS | 35.0% | |
| GTTGCTAAGGTATGTAATCT+AGG | + | chr3.4:22530769-22530788 | MS.gene82275:intron | 35.0% | |
| TAGTACAAGAATTGGAGTAC+TGG | - | chr3.4:22530941-22530960 | None:intergenic | 35.0% | |
| TATGAACACCAGCTAAATTG+GGG | - | chr3.4:22529469-22529488 | None:intergenic | 35.0% | |
| TCCAATTGACACATTAAACG+TGG | - | chr3.4:22531460-22531479 | None:intergenic | 35.0% | |
| TCTTCTTCTTTACTCTCTAC+AGG | - | chr3.4:22530245-22530264 | None:intergenic | 35.0% | |
| TGACTTGATCAAAGACTTCA+TGG | - | chr3.4:22530030-22530049 | None:intergenic | 35.0% | |
| TGGATAGAAGAGAGAAAGAA+AGG | + | chr3.4:22530315-22530334 | MS.gene82275:CDS | 35.0% | |
| TGTAGAGAGTAAAGAAGAAG+AGG | + | chr3.4:22530244-22530263 | MS.gene82275:CDS | 35.0% | |
| TTCTCCAAGTCAAGAGTTAT+AGG | - | chr3.4:22531032-22531051 | None:intergenic | 35.0% | |
| TTCTGATAGACCCCTTAATA+TGG | - | chr3.4:22531340-22531359 | None:intergenic | 35.0% | |
| TTGAAAACCTTGAAAGGACT+TGG | - | chr3.4:22529352-22529371 | None:intergenic | 35.0% | |
| TTGTCCTCAGTTTCTAACTT+TGG | + | chr3.4:22529640-22529659 | MS.gene82275:intron | 35.0% | |
| ! | CAGTGTTTTATAGGTTGCTA+AGG | + | chr3.4:22530756-22530775 | MS.gene82275:intron | 35.0% |
| ! | CTTTATTTCCCCAATTTAGC+TGG | + | chr3.4:22529458-22529477 | MS.gene82275:intron | 35.0% |
| ! | GAAAAGAGATCTGATGATGA+GGG | + | chr3.4:22531583-22531602 | MS.gene82275:intron | 35.0% |
| ! | GAGTAACCAAATTCGGATTT+TGG | - | chr3.4:22529995-22530014 | None:intergenic | 35.0% |
| ! | TACCAGTGTCAGTGTTTTAT+AGG | + | chr3.4:22530747-22530766 | MS.gene82275:intron | 35.0% |
| ! | TGAAAAGAGATCTGATGATG+AGG | + | chr3.4:22531582-22531601 | MS.gene82275:intron | 35.0% |
| !! | CAACTGGGTTTGTTAAAGTT+TGG | + | chr3.4:22529115-22529134 | MS.gene82275:intron | 35.0% |
| !! | CGAAGAATTTGTTTTCGAGA+CGG | + | chr3.4:22530129-22530148 | MS.gene82275:CDS | 35.0% |
| !! | TTGGGTTTTTCCGTTTTTGA+AGG | + | chr3.4:22529715-22529734 | MS.gene82275:intron | 35.0% |
| !! | TTTTTCCAATCGATTTTCGC+GGG | - | chr3.4:22528793-22528812 | None:intergenic | 35.0% |
| !!! | AGAAAATCCTCTGCTGTTTT+GGG | - | chr3.4:22529322-22529341 | None:intergenic | 35.0% |
| AATAACCCTAACCCCTCAAA+AGG | + | chr3.4:22531131-22531150 | MS.gene82275:CDS | 40.0% | |
| ACAACAATGACGATGAAGCT+TGG | + | chr3.4:22528902-22528921 | MS.gene82275:CDS | 40.0% | |
| ACCATTGCTTGAAATGGGTA+AGG | + | chr3.4:22530340-22530359 | MS.gene82275:CDS | 40.0% | |
| AGACAAGAAGTCGACAAACT+TGG | - | chr3.4:22528866-22528885 | None:intergenic | 40.0% | |
| AGCTTCATCGTCATTGTTGT+TGG | - | chr3.4:22528902-22528921 | None:intergenic | 40.0% | |
| CTGCAATGAATTGAAGAGAC+TGG | + | chr3.4:22530178-22530197 | MS.gene82275:CDS | 40.0% | |
| GAAGAACCAAAACATGTCCA+AGG | - | chr3.4:22531726-22531745 | None:intergenic | 40.0% | |
| GACAAGAAGTCGACAAACTT+GGG | - | chr3.4:22528865-22528884 | None:intergenic | 40.0% | |
| GATGCCTATAACTCTTGACT+TGG | + | chr3.4:22531025-22531044 | MS.gene82275:CDS | 40.0% | |
| GATGTAGGACATAAGACGTA+CGG | + | chr3.4:22530542-22530561 | MS.gene82275:intron | 40.0% | |
| GCAAAACAAGGAAGTTGCAA+AGG | + | chr3.4:22531643-22531662 | MS.gene82275:CDS | 40.0% | |
| GGACTTCTTGCCTTCAAAAA+CGG | - | chr3.4:22529728-22529747 | None:intergenic | 40.0% | |
| GGTAGTTGCTCCATATTAAG+GGG | + | chr3.4:22531327-22531346 | MS.gene82275:intron | 40.0% | |
| TGACACATTGCAAGACAGTA+CGG | + | chr3.4:22530076-22530095 | MS.gene82275:CDS | 40.0% | |
| TGGAAGAGAAACAAAAGCCT+TGG | + | chr3.4:22531706-22531725 | MS.gene82275:CDS | 40.0% | |
| TTGAAATGGGTAAGGCTGAA+AGG | + | chr3.4:22530348-22530367 | MS.gene82275:CDS | 40.0% | |
| TTGGGGAGAAGATGATGAAA+GGG | - | chr3.4:22529937-22529956 | None:intergenic | 40.0% | |
| ! | ACCTGGTCAGTTTTCTCAAT+TGG | + | chr3.4:22528933-22528952 | MS.gene82275:intron | 40.0% |
| ! | CAAAAGCCTTGGACATGTTT+TGG | + | chr3.4:22531717-22531736 | MS.gene82275:CDS | 40.0% |
| ! | CCTGGTCAGTTTTCTCAATT+GGG | + | chr3.4:22528934-22528953 | MS.gene82275:intron | 40.0% |
| !! | CAGCTTGATAATGTTGTGCA+AGG | - | chr3.4:22531752-22531771 | None:intergenic | 40.0% |
| !! | GAGAAAATCCTCTGCTGTTT+TGG | - | chr3.4:22529323-22529342 | None:intergenic | 40.0% |
| !!! | GAAAATCCTCTGCTGTTTTG+GGG | - | chr3.4:22529321-22529340 | None:intergenic | 40.0% |
| AATGGGTAAGGCTGAAAGGT+TGG | + | chr3.4:22530352-22530371 | MS.gene82275:CDS | 45.0% | |
| ACGCCTTCGAACTAAAGTGT+CGG | - | chr3.4:22530605-22530624 | None:intergenic | 45.0% | |
| AGAGACTGGCATTAAGAGCT+AGG | + | chr3.4:22530192-22530211 | MS.gene82275:CDS | 45.0% | |
| ATGTCTAACACCAACGCATG+CGG | + | chr3.4:22530649-22530668 | MS.gene82275:intron | 45.0% | |
| CAGATCACCAAGTCCTTTCA+AGG | + | chr3.4:22529342-22529361 | MS.gene82275:CDS | 45.0% | |
| CCCAATTGAGAAAACTGACC+AGG | - | chr3.4:22528937-22528956 | None:intergenic | 45.0% | |
| CTTGGGGAGAAGATGATGAA+AGG | - | chr3.4:22529938-22529957 | None:intergenic | 45.0% | |
| GAAAAACACTGAGGAGAAGG+AGG | - | chr3.4:22531101-22531120 | None:intergenic | 45.0% | |
| GAGACTGGCATTAAGAGCTA+GGG | + | chr3.4:22530193-22530212 | MS.gene82275:CDS | 45.0% | |
| GATGATGAGGGTTATCATGC+AGG | + | chr3.4:22531595-22531614 | MS.gene82275:intron | 45.0% | |
| GCAGAAAAACACTGAGGAGA+AGG | - | chr3.4:22531104-22531123 | None:intergenic | 45.0% | |
| GCCTTACCCATTTCAAGCAA+TGG | - | chr3.4:22530344-22530363 | None:intergenic | 45.0% | |
| GGAGAATGTGAGGCAAAAGA+GGG | + | chr3.4:22531046-22531065 | MS.gene82275:CDS | 45.0% | |
| GGTTAGGACATACCATTAGC+CGG | - | chr3.4:22531166-22531185 | None:intergenic | 45.0% | |
| GTTAGGACATACCATTAGCC+GGG | - | chr3.4:22531165-22531184 | None:intergenic | 45.0% | |
| TGGAGAATGTGAGGCAAAAG+AGG | + | chr3.4:22531045-22531064 | MS.gene82275:CDS | 45.0% | |
| TGGAGGGGATGTGTGTTAAA+GGG | + | chr3.4:22530372-22530391 | MS.gene82275:CDS | 45.0% | |
| TGGGGAGAAGATGATGAAAG+GGG | - | chr3.4:22529936-22529955 | None:intergenic | 45.0% | |
| TTGGAGGGGATGTGTGTTAA+AGG | + | chr3.4:22530371-22530390 | MS.gene82275:CDS | 45.0% | |
| ! | ACACCGACACTTTAGTTCGA+AGG | + | chr3.4:22530599-22530618 | MS.gene82275:intron | 45.0% |
| ! | CTCCTCAGTGTTTTTCTGCT+GGG | + | chr3.4:22531105-22531124 | MS.gene82275:CDS | 45.0% |
| ! | TCTCCTCAGTGTTTTTCTGC+TGG | + | chr3.4:22531104-22531123 | MS.gene82275:CDS | 45.0% |
| !! | CTCTTGACTTGGAGAATGTG+AGG | + | chr3.4:22531036-22531055 | MS.gene82275:CDS | 45.0% |
| !! | TGGAACCTTTTGAGGGGTTA+GGG | - | chr3.4:22531139-22531158 | None:intergenic | 45.0% |
| !!! | GAAGCTTGGTTTTGCAAACC+TGG | + | chr3.4:22528916-22528935 | MS.gene82275:CDS | 45.0% |
| ACATACCATTAGCCGGGATC+TGG | - | chr3.4:22531159-22531178 | None:intergenic | 50.0% | |
| ACTGACACTGGTATGGACAC+TGG | - | chr3.4:22530740-22530759 | None:intergenic | 50.0% | |
| AGCCCAGCAGAAAAACACTG+AGG | - | chr3.4:22531110-22531129 | None:intergenic | 50.0% | |
| AGGGTTATCATGCAGGAGAG+AGG | + | chr3.4:22531602-22531621 | MS.gene82275:intron | 50.0% | |
| ATTGTGCAGAAGACCTGACG+AGG | + | chr3.4:22530995-22531014 | MS.gene82275:intron | 50.0% | |
| CAATCACCCCAAAACAGCAG+AGG | + | chr3.4:22529312-22529331 | MS.gene82275:CDS | 50.0% | |
| CACATTGCAAGACAGTACGG+AGG | + | chr3.4:22530079-22530098 | MS.gene82275:CDS | 50.0% | |
| CCTCAAAAGGTTCCAGATCC+CGG | + | chr3.4:22531144-22531163 | MS.gene82275:CDS | 50.0% | |
| GGAGAAGATGATGAAAGGGG+TGG | - | chr3.4:22529933-22529952 | None:intergenic | 50.0% | |
| GGTAAGGCTGAAAGGTTGGA+GGG | + | chr3.4:22530356-22530375 | MS.gene82275:CDS | 50.0% | |
| GTAAGGCTGAAAGGTTGGAG+GGG | + | chr3.4:22530357-22530376 | MS.gene82275:CDS | 50.0% | |
| TGGAACCCGCGAAAATCGAT+TGG | + | chr3.4:22528785-22528804 | MS.gene82275:CDS | 50.0% | |
| TGTCTAACACCAACGCATGC+GGG | + | chr3.4:22530650-22530669 | MS.gene82275:intron | 50.0% | |
| ! | AACTCTGCCAAAGCGTTCAC+CGG | - | chr3.4:22530296-22530315 | None:intergenic | 50.0% |
| ! | TCGAAGGCGTGTCTTAAGTC+TGG | + | chr3.4:22530615-22530634 | MS.gene82275:intron | 50.0% |
| !! | CGGGATCTGGAACCTTTTGA+GGG | - | chr3.4:22531146-22531165 | None:intergenic | 50.0% |
| !! | CTGGAACCTTTTGAGGGGTT+AGG | - | chr3.4:22531140-22531159 | None:intergenic | 50.0% |
| !! | GGGATCTGGAACCTTTTGAG+GGG | - | chr3.4:22531145-22531164 | None:intergenic | 50.0% |
| AGGTTCCAGATCCCGGCTAA+TGG | + | chr3.4:22531151-22531170 | MS.gene82275:CDS | 55.0% | |
| ATGTAACCACCCGCATGCGT+TGG | - | chr3.4:22530662-22530681 | None:intergenic | 55.0% | |
| CGACAAACTTGGGTGCGTTG+AGG | - | chr3.4:22528855-22528874 | None:intergenic | 55.0% | |
| GGGTAAGGCTGAAAGGTTGG+AGG | + | chr3.4:22530355-22530374 | MS.gene82275:CDS | 55.0% | |
| GGTGAACGCTTTGGCAGAGT+TGG | + | chr3.4:22530295-22530314 | MS.gene82275:CDS | 55.0% | |
| ! | GGCATCTTTTCTGCCTCGTC+AGG | - | chr3.4:22531011-22531030 | None:intergenic | 55.0% |
| !! | CCGGGATCTGGAACCTTTTG+AGG | - | chr3.4:22531147-22531166 | None:intergenic | 55.0% |
| CTAACACCAACGCATGCGGG+TGG | + | chr3.4:22530653-22530672 | MS.gene82275:intron | 60.0% | |
| TGTGCACGAGAAGACCTCGC+CGG | + | chr3.4:22530274-22530293 | MS.gene82275:CDS | 60.0% | |
| GACCTCGCCGGTGAACGCTT+TGG | + | chr3.4:22530286-22530305 | MS.gene82275:CDS | 65.0% | |
| ! | TGCCAAAGCGTTCACCGGCG+AGG | - | chr3.4:22530291-22530310 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 22528784 | 22531772 | 22528784 | ID=MS.gene82275 |
| chr3.4 | mRNA | 22528784 | 22531772 | 22528784 | ID=MS.gene82275.t1;Parent=MS.gene82275 |
| chr3.4 | exon | 22528784 | 22528937 | 22528784 | ID=MS.gene82275.t1.exon1;Parent=MS.gene82275.t1 |
| chr3.4 | CDS | 22528784 | 22528937 | 22528784 | ID=cds.MS.gene82275.t1;Parent=MS.gene82275.t1 |
| chr3.4 | exon | 22529308 | 22529363 | 22529308 | ID=MS.gene82275.t1.exon2;Parent=MS.gene82275.t1 |
| chr3.4 | CDS | 22529308 | 22529363 | 22529308 | ID=cds.MS.gene82275.t1;Parent=MS.gene82275.t1 |
| chr3.4 | exon | 22529737 | 22529795 | 22529737 | ID=MS.gene82275.t1.exon3;Parent=MS.gene82275.t1 |
| chr3.4 | CDS | 22529737 | 22529795 | 22529737 | ID=cds.MS.gene82275.t1;Parent=MS.gene82275.t1 |
| chr3.4 | exon | 22529905 | 22530411 | 22529905 | ID=MS.gene82275.t1.exon4;Parent=MS.gene82275.t1 |
| chr3.4 | CDS | 22529905 | 22530411 | 22529905 | ID=cds.MS.gene82275.t1;Parent=MS.gene82275.t1 |
| chr3.4 | exon | 22531004 | 22531172 | 22531004 | ID=MS.gene82275.t1.exon5;Parent=MS.gene82275.t1 |
| chr3.4 | CDS | 22531004 | 22531172 | 22531004 | ID=cds.MS.gene82275.t1;Parent=MS.gene82275.t1 |
| chr3.4 | exon | 22531617 | 22531772 | 22531617 | ID=MS.gene82275.t1.exon6;Parent=MS.gene82275.t1 |
| chr3.4 | CDS | 22531617 | 22531772 | 22531617 | ID=cds.MS.gene82275.t1;Parent=MS.gene82275.t1 |
| Gene Sequence |
| Protein sequence |
