AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82418

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82418.t1 MTR_4g083570 96.620 355 6 2 1 354 1 350 0.0 689
MS.gene82418.t1 MTR_8g105030 55.952 336 146 2 13 348 14 347 1.59e-127 371
MS.gene82418.t1 MTR_2g064310 48.169 355 182 1 2 354 4 358 6.22e-115 338
MS.gene82418.t1 MTR_3g082050 52.260 354 147 6 10 354 9 349 8.25e-111 327
MS.gene82418.t1 MTR_3g081640 48.774 367 169 5 1 354 1 361 2.37e-110 326
MS.gene82418.t1 MTR_3g082050 54.294 326 131 5 38 354 56 372 2.04e-109 324
MS.gene82418.t1 MTR_3g082050 54.294 326 131 5 38 354 61 377 2.80e-109 324
MS.gene82418.t1 MTR_3g081580 50.430 349 164 4 14 354 11 358 1.06e-105 314
MS.gene82418.t1 MTR_3g081690 51.988 327 135 6 10 327 9 322 2.80e-100 300
MS.gene82418.t1 MTR_3g081690 54.181 299 119 5 38 327 56 345 6.02e-99 297
MS.gene82418.t1 MTR_3g104400 42.500 360 173 4 29 354 6 365 1.64e-89 273
MS.gene82418.t1 MTR_6g007687 41.667 324 180 2 29 351 29 344 2.31e-86 265
MS.gene82418.t1 MTR_1g016120 39.837 369 175 6 27 354 12 374 2.75e-82 255
MS.gene82418.t1 MTR_5g071990 41.390 331 158 9 35 354 13 318 4.28e-76 237
MS.gene82418.t1 MTR_3g081690 50.926 216 88 5 121 327 25 231 2.17e-56 184
MS.gene82418.t1 MTR_3g081690 61.429 140 52 1 188 327 50 187 1.02e-53 176
MS.gene82418.t1 MTR_3g081690 61.429 140 52 1 188 327 72 209 6.18e-53 175
MS.gene82418.t1 MTR_3g058630 25.180 278 179 8 87 353 89 348 1.28e-17 83.2
MS.gene82418.t1 MTR_4g006710 37.778 90 55 1 37 126 25 113 4.00e-13 65.9
MS.gene82418.t1 MTR_3g081630 55.556 54 24 0 77 130 17 70 9.59e-13 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82418.t1 AT1G31260 63.905 338 115 4 23 354 28 364 7.96e-152 432
MS.gene82418.t1 AT4G19690 59.155 355 129 3 4 354 5 347 4.54e-146 417
MS.gene82418.t1 AT4G19680 55.966 352 143 4 9 354 5 350 5.56e-134 386
MS.gene82418.t1 AT2G04032 51.507 365 166 4 1 354 1 365 2.66e-127 370
MS.gene82418.t1 AT1G05300 49.405 336 158 5 27 354 29 360 1.17e-103 309
MS.gene82418.t1 AT2G32270 47.401 327 150 3 28 354 35 339 9.28e-100 298
MS.gene82418.t1 AT3G12750 46.499 357 178 6 3 354 7 355 9.93e-99 296
MS.gene82418.t1 AT5G62160 43.855 358 189 6 3 354 4 355 1.84e-92 280
MS.gene82418.t1 AT4G19680 54.941 253 102 4 9 255 5 251 3.11e-90 271
MS.gene82418.t1 AT1G10970 41.096 365 176 2 29 354 10 374 1.33e-88 271
MS.gene82418.t1 AT1G10970 41.096 365 176 2 29 354 10 374 1.33e-88 271
MS.gene82418.t1 AT1G60960 39.737 380 175 5 29 354 36 415 2.49e-82 256
MS.gene82418.t1 AT1G60960 39.737 380 175 5 29 354 46 425 3.85e-82 256
MS.gene82418.t1 AT4G33020 36.745 381 187 5 21 354 18 391 2.73e-76 240
MS.gene82418.t1 AT2G30080 40.000 345 162 8 36 354 16 341 5.67e-73 230
MS.gene82418.t1 AT4G33020 37.536 349 164 5 53 354 3 344 1.00e-70 224
MS.gene82418.t1 AT1G05300 47.699 239 113 5 23 253 25 259 1.62e-60 196
MS.gene82418.t1 AT4G19690 50.244 205 86 3 4 204 5 197 3.40e-60 193
MS.gene82418.t1 AT1G60960 36.905 168 89 2 29 181 46 211 1.39e-26 107

Find 81 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATGTCTCTCATGGCTAAA+TGG 0.207478 4.2:+26042132 MS.gene82418:CDS
TTCGCGGCTGGTATTATTCT+TGG 0.240329 4.2:+26040855 MS.gene82418:CDS
CTGCTGATTTCATGAGTAAA+AGG 0.266636 4.2:+26042048 MS.gene82418:CDS
GAGATTGGTGATGTTAATAT+TGG 0.296837 4.2:+26041092 MS.gene82418:CDS
AGTTGCTAAGATTGAGAATA+TGG 0.306889 4.2:-26040745 None:intergenic
AATAATACGTGCTCAATAAA+AGG 0.315250 4.2:+26041553 MS.gene82418:CDS
GTAGTTCATTCAGTGGTAAT+AGG 0.316286 4.2:+26041511 MS.gene82418:CDS
CCATGCCTTCAAACATTTGA+TGG 0.321997 4.2:-26041597 None:intergenic
CACAACATCTCGTACGAATC+AGG 0.323449 4.2:-26040900 None:intergenic
TCGCGGCTGGTATTATTCTT+GGG 0.375353 4.2:+26040856 MS.gene82418:CDS
ATTATGAAAAGATCTCCTTC+TGG 0.382856 4.2:-26040822 None:intergenic
TTCTCAATTACAACACCTCT+TGG 0.401281 4.2:+26041897 MS.gene82418:CDS
GATGTTGTGGAGTGATTGTT+TGG 0.410026 4.2:+26040914 MS.gene82418:CDS
TCTTGAACCCATGATGAATA+TGG 0.411099 4.2:-26041133 None:intergenic
ACACCTCTTGGAATTGCAAT+AGG 0.413916 4.2:+26041909 MS.gene82418:CDS
TTTGTTGTTGCAACTGTTTG+TGG 0.418785 4.2:-26040694 None:intergenic
CTCCTTCTGGGCTTAAAGCC+GGG 0.423076 4.2:-26040809 None:intergenic
CATTCAGTGGTAATAGGACT+TGG 0.426048 4.2:+26041517 MS.gene82418:CDS
ATCTTAGCAACTAGTGTGAT+TGG 0.426800 4.2:+26040756 MS.gene82418:CDS
CCATCAAATGTTTGAAGGCA+TGG 0.429134 4.2:+26041597 MS.gene82418:CDS
TTATGAAAAGATCTCCTTCT+GGG 0.444575 4.2:-26040821 None:intergenic
TGCTTCCATCAAATGTTTGA+AGG 0.446007 4.2:+26041592 MS.gene82418:CDS
TCATCTCCACCATTGCTCTC+TGG 0.458056 4.2:-26041065 None:intergenic
TACTAGTTATTATAGTAAGA+AGG 0.459307 4.2:+26041022 MS.gene82418:CDS
GCTGGTATTATTCTTGGGAC+CGG 0.460618 4.2:+26040861 MS.gene82418:CDS
CATAGCCACAAGTCCCGAAA+AGG 0.460897 4.2:-26040961 None:intergenic
CCAACGGTGATTAGTGCTAC+TGG 0.463209 4.2:-26041966 None:intergenic
AATGTCTCTCATGGCTAAAT+GGG 0.469779 4.2:+26042133 MS.gene82418:CDS
TCTTGGTGGCTGCATTCTCC+AGG 0.469784 4.2:+26041621 MS.gene82418:CDS
TCTCCTTCTGGGCTTAAAGC+CGG 0.479091 4.2:-26040810 None:intergenic
TTGCTTAATGCATCATCTGC+TGG 0.479417 4.2:+26041990 MS.gene82418:CDS
CTGGTATTATTCTTGGGACC+GGG 0.483697 4.2:+26040862 MS.gene82418:CDS
TATTGAGCACGTATTATTGG+AGG 0.484451 4.2:-26041548 None:intergenic
GATTGGTGTGTGTTTACCCT+TGG 0.492007 4.2:+26040773 MS.gene82418:CDS
TATAGTAAGAAGGGTAAGAG+TGG 0.492096 4.2:+26041032 MS.gene82418:CDS
GTTCTTAAAGAATGCAATGT+TGG 0.492455 4.2:+26041866 MS.gene82418:CDS
CATCAAATGTTTGAAGGCAT+GGG 0.494735 4.2:+26041598 MS.gene82418:CDS
ATGTTTGAAGGCATGGGTCT+TGG 0.494950 4.2:+26041604 MS.gene82418:CDS
TTTGAAGGCATGGGTCTTGG+TGG 0.502758 4.2:+26041607 MS.gene82418:CDS
CTCTTTGTAACTCGTTGACA+TGG 0.505121 4.2:-26041937 None:intergenic
CATAATCGTGAAATGTTTCG+CGG 0.505305 4.2:+26040839 MS.gene82418:CDS
ACGTTATCGCGTAGTGGTCA+TGG 0.509828 4.2:+26041184 MS.gene82418:CDS
GTAGCAGTATTCCTTGGTGC+TGG 0.511964 4.2:+26042107 MS.gene82418:CDS
TTTCATGAGTAAAAGGATGC+AGG 0.512721 4.2:+26042055 MS.gene82418:CDS
AAAATACAGGTATTAGAACT+TGG 0.513674 4.2:+26041484 MS.gene82418:intron
GGTGGTCACCATATTCATCA+TGG 0.520218 4.2:+26041125 MS.gene82418:CDS
CTTGGCGACACGTTCAATCC+CGG 0.523996 4.2:+26040791 MS.gene82418:CDS
TCTTATGTAGCAGTATTCCT+TGG 0.528829 4.2:+26042101 MS.gene82418:CDS
AGTGGTAATAGGACTTGGAA+TGG 0.532560 4.2:+26041522 MS.gene82418:CDS
ATCGTGAAATGTTTCGCGGC+TGG 0.535387 4.2:+26040843 MS.gene82418:CDS
GCAGTATTCCTTGGTGCTGG+TGG 0.536079 4.2:+26042110 MS.gene82418:CDS
ACTAGTTATTATAGTAAGAA+GGG 0.546690 4.2:+26041023 MS.gene82418:CDS
CTGATTCGTACGAGATGTTG+TGG 0.549620 4.2:+26040901 MS.gene82418:CDS
GGTGGAGATGATCAAGAGAT+TGG 0.555287 4.2:+26041077 MS.gene82418:CDS
CCAGTAGCACTAATCACCGT+TGG 0.563157 4.2:+26041966 MS.gene82418:CDS
TGCTGGTGGAATGTCTCTCA+TGG 0.563652 4.2:+26042124 MS.gene82418:CDS
TGGAATTGTAGTTCATTCAG+TGG 0.570042 4.2:+26041504 MS.gene82418:CDS
CGGGATTGAACGTGTCGCCA+AGG 0.570970 4.2:-26040790 None:intergenic
CTCCGCGGTGATCACAATGA+TGG 0.573156 4.2:+26040986 MS.gene82418:CDS
GTGGTAATAGGACTTGGAAT+GGG 0.573923 4.2:+26041523 MS.gene82418:CDS
ACAACATCTCGTACGAATCA+GGG 0.576077 4.2:-26040899 None:intergenic
TTCATGAGTAAAAGGATGCA+GGG 0.578472 4.2:+26042056 MS.gene82418:CDS
GTGGTCACCATATTCATCAT+GGG 0.584783 4.2:+26041126 MS.gene82418:CDS
ATAGCCACAAGTCCCGAAAA+GGG 0.585128 4.2:-26040960 None:intergenic
ATCCCGGCTTTAAGCCCAGA+AGG 0.597081 4.2:+26040807 MS.gene82418:CDS
GGGATTGAACGTGTCGCCAA+GGG 0.597907 4.2:-26040789 None:intergenic
GTGATTCCAGAGAGCAATGG+TGG 0.601721 4.2:+26041059 MS.gene82418:CDS
AGGGAGTACATGCATGAACC+CGG 0.608876 4.2:-26040880 None:intergenic
GAAAAGGGAAACTCGCGCCA+TGG 0.616977 4.2:-26040945 None:intergenic
ACGCGATAACGTAGAAGTTG+TGG 0.620330 4.2:-26041173 None:intergenic
AAACATTTGATGGAAGCACA+TGG 0.651723 4.2:-26041587 None:intergenic
TGATGCATTAAGCAATCCAA+CGG 0.658064 4.2:-26041982 None:intergenic
ACTTCTACGTTATCGCGTAG+TGG 0.669693 4.2:+26041178 MS.gene82418:CDS
AATATTGGACATTCACATGG+TGG 0.690269 4.2:+26041107 MS.gene82418:CDS
GTTAATATTGGACATTCACA+TGG 0.691186 4.2:+26041104 MS.gene82418:CDS
AGTCCTATTGCAATTCCAAG+AGG 0.705793 4.2:-26041912 None:intergenic
GAGACATTCCACCAGCACCA+AGG 0.709438 4.2:-26042118 None:intergenic
ATTGTTTGGATGAGAAACCA+TGG 0.713002 4.2:+26040928 MS.gene82418:CDS
GTTGTGATTCCAGAGAGCAA+TGG 0.732938 4.2:+26041056 MS.gene82418:CDS
ACTTGTGGCTATGTTCTCCG+CGG 0.748611 4.2:+26040971 MS.gene82418:CDS
GACCATCATTGTGATCACCG+CGG 0.808072 4.2:-26040988 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAATTAATTGAATATATA+TGG - chr4.2:26041670-26041689 None:intergenic 10.0%
!! CTAATTTGATATTAAAATAC+AGG + chr4.2:26041471-26041490 MS.gene82418:intron 15.0%
!! AAATATTGAATCAAATTACC+TGG - chr4.2:26041642-26041661 None:intergenic 20.0%
!! AATGTTAGAGACATTAAATT+TGG - chr4.2:26041362-26041381 None:intergenic 20.0%
!! ACTAGTTATTATAGTAAGAA+GGG + chr4.2:26041023-26041042 MS.gene82418:CDS 20.0%
!! TACTAGTTATTATAGTAAGA+AGG + chr4.2:26041022-26041041 MS.gene82418:CDS 20.0%
!! TTTATCAACGAAATTAAAGA+TGG + chr4.2:26041380-26041399 MS.gene82418:intron 20.0%
! AAAATACAGGTATTAGAACT+TGG + chr4.2:26041484-26041503 MS.gene82418:intron 25.0%
! AACACTTCAATCTTTATAAC+AGG + chr4.2:26041833-26041852 MS.gene82418:intron 25.0%
! AATAATACGTGCTCAATAAA+AGG + chr4.2:26041553-26041572 MS.gene82418:CDS 25.0%
! AATTAGAAGAAGCTGAAATA+AGG + chr4.2:26041314-26041333 MS.gene82418:intron 25.0%
!! TTTTATTGAGCACGTATTAT+TGG - chr4.2:26041554-26041573 None:intergenic 25.0%
AGTTGCTAAGATTGAGAATA+TGG - chr4.2:26040748-26040767 None:intergenic 30.0%
ATTACCTTCAATTCATCGAA+GGG + chr4.2:26041403-26041422 MS.gene82418:intron 30.0%
ATTATGAAAAGATCTCCTTC+TGG - chr4.2:26040825-26040844 None:intergenic 30.0%
GTTAATATTGGACATTCACA+TGG + chr4.2:26041104-26041123 MS.gene82418:CDS 30.0%
GTTCTTAAAGAATGCAATGT+TGG + chr4.2:26041866-26041885 MS.gene82418:CDS 30.0%
TACCAAACGTATTACTAACA+CGG - chr4.2:26041779-26041798 None:intergenic 30.0%
TTATGAAAAGATCTCCTTCT+GGG - chr4.2:26040824-26040843 None:intergenic 30.0%
! TCTTTTAATCTACATGGCTT+TGG + chr4.2:26042013-26042032 MS.gene82418:CDS 30.0%
!! AATATGGCTATGAGTTTTAG+AGG - chr4.2:26040732-26040751 None:intergenic 30.0%
!! GAGATTGGTGATGTTAATAT+TGG + chr4.2:26041092-26041111 MS.gene82418:CDS 30.0%
AATATTGGACATTCACATGG+TGG + chr4.2:26041107-26041126 MS.gene82418:CDS 35.0%
AATGTCTCTCATGGCTAAAT+GGG + chr4.2:26042133-26042152 MS.gene82418:CDS 35.0%
AATTCATCGAAGGGTAATGT+AGG + chr4.2:26041412-26041431 MS.gene82418:intron 35.0%
ACCAAACGTATTACTAACAC+GGG - chr4.2:26041778-26041797 None:intergenic 35.0%
AGAAGAAGCTGAAATAAGGA+CGG + chr4.2:26041318-26041337 MS.gene82418:intron 35.0%
ATCTTAGCAACTAGTGTGAT+TGG + chr4.2:26040756-26040775 MS.gene82418:CDS 35.0%
ATGTCTTCGATTAGAGGAAT+CGG - chr4.2:26041751-26041770 None:intergenic 35.0%
ATTACCCTTCGATGAATTGA+AGG - chr4.2:26041410-26041429 None:intergenic 35.0%
ATTGTTTGGATGAGAAACCA+TGG + chr4.2:26040928-26040947 MS.gene82418:CDS 35.0%
CATAATCGTGAAATGTTTCG+CGG + chr4.2:26040839-26040858 MS.gene82418:CDS 35.0%
GATTACCTTCAATTCATCGA+AGG + chr4.2:26041402-26041421 MS.gene82418:intron 35.0%
GTAGTTCATTCAGTGGTAAT+AGG + chr4.2:26041511-26041530 MS.gene82418:CDS 35.0%
TATAGTAAGAAGGGTAAGAG+TGG + chr4.2:26041032-26041051 MS.gene82418:CDS 35.0%
TATTGAGCACGTATTATTGG+AGG - chr4.2:26041551-26041570 None:intergenic 35.0%
TCTTATGTAGCAGTATTCCT+TGG + chr4.2:26042101-26042120 MS.gene82418:CDS 35.0%
TCTTGAACCCATGATGAATA+TGG - chr4.2:26041136-26041155 None:intergenic 35.0%
TGATGCATTAAGCAATCCAA+CGG - chr4.2:26041985-26042004 None:intergenic 35.0%
TGCTTCCATCAAATGTTTGA+AGG + chr4.2:26041592-26041611 MS.gene82418:CDS 35.0%
TGGAATTGTAGTTCATTCAG+TGG + chr4.2:26041504-26041523 MS.gene82418:CDS 35.0%
TTCATGAGTAAAAGGATGCA+GGG + chr4.2:26042056-26042075 MS.gene82418:CDS 35.0%
TTCTCAATTACAACACCTCT+TGG + chr4.2:26041897-26041916 MS.gene82418:CDS 35.0%
TTTCATGAGTAAAAGGATGC+AGG + chr4.2:26042055-26042074 MS.gene82418:CDS 35.0%
! AAACATTTGATGGAAGCACA+TGG - chr4.2:26041590-26041609 None:intergenic 35.0%
! CATCAAATGTTTGAAGGCAT+GGG + chr4.2:26041598-26041617 MS.gene82418:CDS 35.0%
!! CTGCTGATTTCATGAGTAAA+AGG + chr4.2:26042048-26042067 MS.gene82418:CDS 35.0%
!! TTTGTTGTTGCAACTGTTTG+TGG - chr4.2:26040697-26040716 None:intergenic 35.0%
!!! TGCTGGTCTTTTAATCTACA+TGG + chr4.2:26042007-26042026 MS.gene82418:CDS 35.0%
ACAACATCTCGTACGAATCA+GGG - chr4.2:26040902-26040921 None:intergenic 40.0%
ACACCTCTTGGAATTGCAAT+AGG + chr4.2:26041909-26041928 MS.gene82418:CDS 40.0%
ACCCGTGTTAGTAATACGTT+TGG + chr4.2:26041774-26041793 MS.gene82418:intron 40.0%
AGTCCTATTGCAATTCCAAG+AGG - chr4.2:26041915-26041934 None:intergenic 40.0%
AGTGGTAATAGGACTTGGAA+TGG + chr4.2:26041522-26041541 MS.gene82418:CDS 40.0%
CATTCAGTGGTAATAGGACT+TGG + chr4.2:26041517-26041536 MS.gene82418:CDS 40.0%
CCATCAAATGTTTGAAGGCA+TGG + chr4.2:26041597-26041616 MS.gene82418:CDS 40.0%
CCATGCCTTCAAACATTTGA+TGG - chr4.2:26041600-26041619 None:intergenic 40.0%
CTCACAGTATCATGGTAGTA+AGG - chr4.2:26041443-26041462 None:intergenic 40.0%
CTCTTTGTAACTCGTTGACA+TGG - chr4.2:26041940-26041959 None:intergenic 40.0%
GAATGTCTCTCATGGCTAAA+TGG + chr4.2:26042132-26042151 MS.gene82418:CDS 40.0%
GATGTTGTGGAGTGATTGTT+TGG + chr4.2:26040914-26040933 MS.gene82418:CDS 40.0%
GGTAACATGTCTTCGATTAG+AGG - chr4.2:26041757-26041776 None:intergenic 40.0%
GTGGTAATAGGACTTGGAAT+GGG + chr4.2:26041523-26041542 MS.gene82418:CDS 40.0%
GTGGTCACCATATTCATCAT+GGG + chr4.2:26041126-26041145 MS.gene82418:CDS 40.0%
TTGCTTAATGCATCATCTGC+TGG + chr4.2:26041990-26042009 MS.gene82418:CDS 40.0%
!! TAGAGGAATCGGTGTTGAAT+AGG - chr4.2:26041740-26041759 None:intergenic 40.0%
ACGCGATAACGTAGAAGTTG+TGG - chr4.2:26041176-26041195 None:intergenic 45.0%
ACTTCTACGTTATCGCGTAG+TGG + chr4.2:26041178-26041197 MS.gene82418:CDS 45.0%
ATAGCCACAAGTCCCGAAAA+GGG - chr4.2:26040963-26040982 None:intergenic 45.0%
CACAACATCTCGTACGAATC+AGG - chr4.2:26040903-26040922 None:intergenic 45.0%
CACACTCACTCACAGTATCA+TGG - chr4.2:26041451-26041470 None:intergenic 45.0%
CTGGTATTATTCTTGGGACC+GGG + chr4.2:26040862-26040881 MS.gene82418:CDS 45.0%
GATTGGTGTGTGTTTACCCT+TGG + chr4.2:26040773-26040792 MS.gene82418:CDS 45.0%
GCTGGTATTATTCTTGGGAC+CGG + chr4.2:26040861-26040880 MS.gene82418:CDS 45.0%
GGTGGAGATGATCAAGAGAT+TGG + chr4.2:26041077-26041096 MS.gene82418:CDS 45.0%
GGTGGTCACCATATTCATCA+TGG + chr4.2:26041125-26041144 MS.gene82418:CDS 45.0%
GTTGTGATTCCAGAGAGCAA+TGG + chr4.2:26041056-26041075 MS.gene82418:CDS 45.0%
TCGCGGCTGGTATTATTCTT+GGG + chr4.2:26040856-26040875 MS.gene82418:CDS 45.0%
TTCGCGGCTGGTATTATTCT+TGG + chr4.2:26040855-26040874 MS.gene82418:CDS 45.0%
! ATGTTTGAAGGCATGGGTCT+TGG + chr4.2:26041604-26041623 MS.gene82418:CDS 45.0%
! CTGATTCGTACGAGATGTTG+TGG + chr4.2:26040901-26040920 MS.gene82418:CDS 45.0%
ACGTTATCGCGTAGTGGTCA+TGG + chr4.2:26041184-26041203 MS.gene82418:CDS 50.0%
ACTTGTGGCTATGTTCTCCG+CGG + chr4.2:26040971-26040990 MS.gene82418:CDS 50.0%
ATCGTGAAATGTTTCGCGGC+TGG + chr4.2:26040843-26040862 MS.gene82418:CDS 50.0%
CATAGCCACAAGTCCCGAAA+AGG - chr4.2:26040964-26040983 None:intergenic 50.0%
CCAACGGTGATTAGTGCTAC+TGG - chr4.2:26041969-26041988 None:intergenic 50.0%
CCAGTAGCACTAATCACCGT+TGG + chr4.2:26041966-26041985 MS.gene82418:CDS 50.0%
GACCATCATTGTGATCACCG+CGG - chr4.2:26040991-26041010 None:intergenic 50.0%
GTGATTCCAGAGAGCAATGG+TGG + chr4.2:26041059-26041078 MS.gene82418:CDS 50.0%
TCATCTCCACCATTGCTCTC+TGG - chr4.2:26041068-26041087 None:intergenic 50.0%
TCTCCTTCTGGGCTTAAAGC+CGG - chr4.2:26040813-26040832 None:intergenic 50.0%
TGCTGGTGGAATGTCTCTCA+TGG + chr4.2:26042124-26042143 MS.gene82418:CDS 50.0%
! AGGGAGTACATGCATGAACC+CGG - chr4.2:26040883-26040902 None:intergenic 50.0%
! ATGGCGCGAGTTTCCCTTTT+CGG + chr4.2:26040947-26040966 MS.gene82418:CDS 50.0%
! GTAGCAGTATTCCTTGGTGC+TGG + chr4.2:26042107-26042126 MS.gene82418:CDS 50.0%
! TTTGAAGGCATGGGTCTTGG+TGG + chr4.2:26041607-26041626 MS.gene82418:CDS 50.0%
!! GTTTCCCTTTTCGGGACTTG+TGG + chr4.2:26040956-26040975 MS.gene82418:CDS 50.0%
CTCCGCGGTGATCACAATGA+TGG + chr4.2:26040986-26041005 MS.gene82418:CDS 55.0%
CTCCTTCTGGGCTTAAAGCC+GGG - chr4.2:26040812-26040831 None:intergenic 55.0%
CTTGGCGACACGTTCAATCC+CGG + chr4.2:26040791-26040810 MS.gene82418:CDS 55.0%
GAAAAGGGAAACTCGCGCCA+TGG - chr4.2:26040948-26040967 None:intergenic 55.0%
GAGACATTCCACCAGCACCA+AGG - chr4.2:26042121-26042140 None:intergenic 55.0%
GGGATTGAACGTGTCGCCAA+GGG - chr4.2:26040792-26040811 None:intergenic 55.0%
! TCTTGGTGGCTGCATTCTCC+AGG + chr4.2:26041621-26041640 MS.gene82418:CDS 55.0%
! TGGCGCGAGTTTCCCTTTTC+GGG + chr4.2:26040948-26040967 MS.gene82418:CDS 55.0%
!! ATCCCGGCTTTAAGCCCAGA+AGG + chr4.2:26040807-26040826 MS.gene82418:CDS 55.0%
!! GCAGTATTCCTTGGTGCTGG+TGG + chr4.2:26042110-26042129 MS.gene82418:CDS 55.0%
CGGGATTGAACGTGTCGCCA+AGG - chr4.2:26040793-26040812 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 26040597 26042160 26040597 ID=MS.gene82418
chr4.2 mRNA 26040597 26042160 26040597 ID=MS.gene82418.t1;Parent=MS.gene82418
chr4.2 exon 26040597 26041205 26040597 ID=MS.gene82418.t1.exon1;Parent=MS.gene82418.t1
chr4.2 CDS 26040597 26041205 26040597 ID=cds.MS.gene82418.t1;Parent=MS.gene82418.t1
chr4.2 exon 26041493 26041642 26041493 ID=MS.gene82418.t1.exon2;Parent=MS.gene82418.t1
chr4.2 CDS 26041493 26041642 26041493 ID=cds.MS.gene82418.t1;Parent=MS.gene82418.t1
chr4.2 exon 26041855 26042160 26041855 ID=MS.gene82418.t1.exon3;Parent=MS.gene82418.t1
chr4.2 CDS 26041855 26042160 26041855 ID=cds.MS.gene82418.t1;Parent=MS.gene82418.t1
Gene Sequence

>MS.gene82418

ATGGCTTATTCAGTAACTATACACAAAGCAATCTTCATTGTTTTCATCTTAATCACTTTTTTAACATCACAAGCACTAGCTGATTGTGAAAGTGAATCCACAAACAGTTGCAACAACAAAGAAAAAGCTCAGCCTCTAAAACTCATAGCCATATTCTCAATCTTAGCAACTAGTGTGATTGGTGTGTGTTTACCCTTGGCGACACGTTCAATCCCGGCTTTAAGCCCAGAAGGAGATCTTTTCATAATCGTGAAATGTTTCGCGGCTGGTATTATTCTTGGGACCGGGTTCATGCATGTACTCCCTGATTCGTACGAGATGTTGTGGAGTGATTGTTTGGATGAGAAACCATGGCGCGAGTTTCCCTTTTCGGGACTTGTGGCTATGTTCTCCGCGGTGATCACAATGATGGTCGATTCTATAGCTACTAGTTATTATAGTAAGAAGGGTAAGAGTGGAGTTGTGATTCCAGAGAGCAATGGTGGAGATGATCAAGAGATTGGTGATGTTAATATTGGACATTCACATGGTGGTCACCATATTCATCATGGGTTCAAGACAGATGAAAGTGACGAGCCACAACTTCTACGTTATCGCGTAGTGGTCATGGTATAATATATATACTTCTTCTATATGATATTAATTTTGAATGCAAAATAATTTGTTAAAAAATATAATATATGTATGCTTTCAATAATGATCAAATCAAACATGTTCAATTAGAAGAAGCTGAAATAAGGACGGAAAATATAAAACTTGCGACCAAATTTAATGTCTCTAACATTTATCAACGAAATTAAAGATGGATTACCTTCAATTCATCGAAGGGTAATGTAGGTCTCACCTTACTACCATGATACTGTGAGTGAGTGTGCTAATTTGATATTAAAATACAGGTATTAGAACTTGGAATTGTAGTTCATTCAGTGGTAATAGGACTTGGAATGGGAGCCTCCAATAATACGTGCTCAATAAAAGGTCTTATAGCAGCCATGTGCTTCCATCAAATGTTTGAAGGCATGGGTCTTGGTGGCTGCATTCTCCAGGTAATTTGATTCAATATTTTTACTCCATATATATTCAATTAATTAACTTTATTAATTAAATTACTTTATTGTGTAATAATATTGAGAAAATTAACCTATTCAACACCGATTCCTCTAATCGAAGACATGTTACCCGTGTTAGTAATACGTTTGGTATTTTATTTATGTGTGTTAATAATTTATAGAAATTAACACTTCAATCTTTATAACAGGCAAAGTACAAGTTCTTAAAGAATGCAATGTTGGTATTCTTCTTCTCAATTACAACACCTCTTGGAATTGCAATAGGACTTGCCATGTCAACGAGTTACAAAGAGAATAGTCCAGTAGCACTAATCACCGTTGGATTGCTTAATGCATCATCTGCTGGTCTTTTAATCTACATGGCTTTGGTTGACTTATTAGCTGCTGATTTCATGAGTAAAAGGATGCAGGGTAGTATTAAGCTTCAATTAAAATCTTATGTAGCAGTATTCCTTGGTGCTGGTGGAATGTCTCTCATGGCTAAATGGGCTTAA
Protein sequence

>MS.gene82418.t1

MAYSVTIHKAIFIVFILITFLTSQALADCESESTNSCNNKEKAQPLKLIAIFSILATSVIGVCLPLATRSIPALSPEGDLFIIVKCFAAGIILGTGFMHVLPDSYEMLWSDCLDEKPWREFPFSGLVAMFSAVITMMVDSIATSYYSKKGKSGVVIPESNGGDDQEIGDVNIGHSHGGHHIHHGFKTDESDEPQLLRYRVVVMVLELGIVVHSVVIGLGMGASNNTCSIKGLIAAMCFHQMFEGMGLGGCILQAKYKFLKNAMLVFFFSITTPLGIAIGLAMSTSYKENSPVALITVGLLNASSAGLLIYMALVDLLAADFMSKRMQGSIKLQLKSYVAVFLGAGGMSLMAKWA