Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82614.t1 | XP_024626487.1 | 81.8 | 362 | 33 | 2 | 1 | 332 | 1 | 359 | 7.30E-161 | 576.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82614.t1 | A0A072U1T4 | 81.8 | 362 | 33 | 2 | 1 | 332 | 1 | 359 | 5.2e-161 | 576.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene82614 | 0.827548 | 1.47E-54 | -1.69E-46 |
| MS.gene050026 | MS.gene82614 | 0.801578 | 8.43E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene82614 | 0.805683 | 1.19E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene82614 | 0.806649 | 7.42E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene82614 | 0.815583 | 8.58E-52 | -1.69E-46 |
| MS.gene05422 | MS.gene82614 | 0.805976 | 1.03E-49 | -1.69E-46 |
| MS.gene05423 | MS.gene82614 | 0.819422 | 1.17E-52 | -1.69E-46 |
| MS.gene054775 | MS.gene82614 | 0.810472 | 1.13E-50 | -1.69E-46 |
| MS.gene054991 | MS.gene82614 | 0.843539 | 1.32E-58 | -1.69E-46 |
| MS.gene056272 | MS.gene82614 | 0.800854 | 1.19E-48 | -1.69E-46 |
| MS.gene059276 | MS.gene82614 | 0.815481 | 9.05E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene82614 | 0.822345 | 2.49E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82614.t1 | MTR_7g066880 | 81.768 | 362 | 33 | 2 | 1 | 332 | 1 | 359 | 0.0 | 591 |
| MS.gene82614.t1 | MTR_7g066890 | 53.994 | 363 | 131 | 4 | 1 | 328 | 2 | 363 | 4.27e-120 | 350 |
| MS.gene82614.t1 | MTR_7g066890 | 48.250 | 400 | 134 | 4 | 1 | 328 | 67 | 465 | 4.51e-112 | 333 |
| MS.gene82614.t1 | MTR_8g098880 | 33.080 | 263 | 120 | 5 | 1 | 209 | 1 | 261 | 1.41e-34 | 128 |
| MS.gene82614.t1 | MTR_7g067580 | 34.659 | 176 | 80 | 3 | 69 | 209 | 9 | 184 | 1.26e-25 | 102 |
| MS.gene82614.t1 | MTR_7g066920 | 61.644 | 73 | 28 | 0 | 145 | 217 | 1 | 73 | 8.44e-25 | 96.7 |
| MS.gene82614.t1 | MTR_7g066970 | 37.755 | 196 | 85 | 2 | 41 | 209 | 66 | 251 | 4.49e-23 | 97.1 |
| MS.gene82614.t1 | MTR_7g078120 | 27.511 | 229 | 128 | 7 | 114 | 310 | 312 | 534 | 5.73e-12 | 67.0 |
| MS.gene82614.t1 | MTR_7g078120 | 27.434 | 226 | 132 | 6 | 114 | 310 | 312 | 534 | 5.90e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene82614.t1 | AT5G04110 | 32.432 | 185 | 89 | 3 | 168 | 316 | 340 | 524 | 3.59e-24 | 103 |
| MS.gene82614.t1 | AT5G04110 | 32.432 | 185 | 89 | 3 | 168 | 316 | 340 | 524 | 3.59e-24 | 103 |
| MS.gene82614.t1 | AT5G04110 | 32.432 | 185 | 89 | 3 | 168 | 316 | 341 | 525 | 3.70e-24 | 103 |
| MS.gene82614.t1 | AT5G04110 | 32.121 | 165 | 76 | 3 | 168 | 296 | 340 | 504 | 1.63e-18 | 86.7 |
Find 52 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATCCATGCTAGAGATTTAA+TGG | 0.190959 | 3.1:+36304317 | MS.gene82614:CDS |
| TGACTTTGATGATTCTATTA+AGG | 0.192630 | 3.1:+36304260 | MS.gene82614:CDS |
| TTCAAGCTGAAGTTCGTAAA+TGG | 0.225040 | 3.1:+36304487 | MS.gene82614:CDS |
| TGAGTTCCTTCTTTGATCTT+TGG | 0.253488 | 3.1:-36304112 | None:intergenic |
| TTAACACAATTAAATAATTC+AGG | 0.258749 | 3.1:-36304564 | None:intergenic |
| GACTTTGATGATTCTATTAA+GGG | 0.305104 | 3.1:+36304261 | MS.gene82614:CDS |
| ACTTACCATCATTTATGTAT+TGG | 0.365830 | 3.1:-36304038 | None:intergenic |
| CTAGGTCCAATGGGAATAAC+TGG | 0.367656 | 3.1:-36304462 | None:intergenic |
| GTCTCTATACTCATACATCT+AGG | 0.386269 | 3.1:-36304834 | None:intergenic |
| TCATCATGCTCGTCATAGAT+TGG | 0.403542 | 3.1:-36304788 | None:intergenic |
| AAGAATATGCTTTAAAATCA+TGG | 0.406708 | 3.1:+36304667 | MS.gene82614:CDS |
| ATGATAAAGATACGATGATA+TGG | 0.421547 | 3.1:+36301697 | None:intergenic |
| CCAATGGGAATAACTGGTCT+TGG | 0.436450 | 3.1:-36304456 | None:intergenic |
| AACTGCACCTAAGGGAGATC+TGG | 0.441097 | 3.1:-36304856 | None:intergenic |
| AGCTAGAGAATGCTTAAAAT+CGG | 0.441855 | 3.1:+36304602 | MS.gene82614:CDS |
| TCAAGCTGAAGTTCGTAAAT+GGG | 0.444773 | 3.1:+36304488 | MS.gene82614:CDS |
| CGAACTTCAGCTTGAAACCT+AGG | 0.456711 | 3.1:-36304480 | None:intergenic |
| CCAAGACCAGTTATTCCCAT+TGG | 0.466479 | 3.1:+36304456 | MS.gene82614:CDS |
| CATCATGCTCGTCATAGATT+GGG | 0.471583 | 3.1:-36304787 | None:intergenic |
| TTCACGATCAACTGCACCTA+AGG | 0.479534 | 3.1:-36304865 | None:intergenic |
| TCTATCATGTTCTGCACTAT+CGG | 0.487951 | 3.1:+36304143 | MS.gene82614:CDS |
| TTAAAATCGGATATTGATAC+CGG | 0.497549 | 3.1:+36304615 | MS.gene82614:CDS |
| GCGAGTAATCGATATTTGTA+TGG | 0.505491 | 3.1:+36304339 | MS.gene82614:CDS |
| TTGCATTGTCATTTAGAGAA+GGG | 0.520249 | 3.1:-36304197 | None:intergenic |
| ATCGGTAAAGAGAAATATAG+TGG | 0.522648 | 3.1:+36304081 | MS.gene82614:CDS |
| TTTAACCAATACATAAATGA+TGG | 0.525857 | 3.1:+36304033 | MS.gene82614:CDS |
| TAGAATCATCAAAGTCACTT+AGG | 0.526045 | 3.1:-36304254 | None:intergenic |
| TTCTAGTTCTAAAGATCCAC+AGG | 0.529202 | 3.1:+36301809 | MS.gene82614:CDS |
| AGCTTGAAACCTAGGTCCAA+TGG | 0.530844 | 3.1:-36304472 | None:intergenic |
| GAATAACTGGTCTTGGAAGA+TGG | 0.535998 | 3.1:-36304449 | None:intergenic |
| GCTTGAAACCTAGGTCCAAT+GGG | 0.536651 | 3.1:-36304471 | None:intergenic |
| TTTGCATTGTCATTTAGAGA+AGG | 0.540742 | 3.1:-36304198 | None:intergenic |
| CAGTTATTCCCATTGGACCT+AGG | 0.541236 | 3.1:+36304463 | MS.gene82614:CDS |
| AAAATGCCAAAGATCAAAGA+AGG | 0.541347 | 3.1:+36304106 | MS.gene82614:CDS |
| TGCATTGTCATTTAGAGAAG+GGG | 0.543570 | 3.1:-36304196 | None:intergenic |
| ATAGAGACCAGATCTCCCTT+AGG | 0.562925 | 3.1:+36304849 | MS.gene82614:CDS |
| GATAGTGCAGAACATGATAG+AGG | 0.563241 | 3.1:-36304141 | None:intergenic |
| GGAATCAAAAGAAGAAGACA+TGG | 0.565129 | 3.1:+36304383 | MS.gene82614:CDS |
| GAGCATAGCATGTTTCATGT+TGG | 0.569427 | 3.1:-36304520 | None:intergenic |
| TATAGCTTTCAAACCTTGTG+AGG | 0.569964 | 3.1:+36301728 | MS.gene82614:CDS |
| TCTCTATACTCATACATCTA+GGG | 0.574198 | 3.1:-36304833 | None:intergenic |
| TCGCCATTAAATCTCTAGCA+TGG | 0.577892 | 3.1:-36304320 | None:intergenic |
| GCATTGTCATTTAGAGAAGG+GGG | 0.603152 | 3.1:-36304195 | None:intergenic |
| TGTGATGACTTCTCCTCACA+AGG | 0.606079 | 3.1:-36301741 | None:intergenic |
| TCACGATCAACTGCACCTAA+GGG | 0.610761 | 3.1:-36304864 | None:intergenic |
| GCTGAAGTTCGTAAATGGGA+TGG | 0.617058 | 3.1:+36304492 | MS.gene82614:CDS |
| ATGCTCGTCATAGATTGGGA+TGG | 0.629267 | 3.1:-36304783 | None:intergenic |
| TGCTTTAAAATCATGGACAG+TGG | 0.637188 | 3.1:+36304674 | MS.gene82614:CDS |
| TAAAGCTATCTTGATTCACA+AGG | 0.681765 | 3.1:-36304293 | None:intergenic |
| TGGTATCGAGACATCAATCG+AGG | 0.698738 | 3.1:+36304359 | MS.gene82614:CDS |
| GCACTATCGGATGAAACACA+AGG | 0.704712 | 3.1:+36304156 | MS.gene82614:CDS |
| TATCGAGACATCAATCGAGG+AGG | 0.729882 | 3.1:+36304362 | MS.gene82614:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAAATTGAAATTATTTA+GGG | - | chr3.1:36302549-36302568 | None:intergenic | 10.0% |
| !!! | AAATAATAATTTTGATTCTT+AGG | - | chr3.1:36303988-36304007 | None:intergenic | 10.0% |
| !!! | AAATGATGATTTTTTTTTAA+TGG | + | chr3.1:36302468-36302487 | MS.gene82614:intron | 10.0% |
| !!! | TAAAGTATAATTTTCTAAAA+AGG | + | chr3.1:36303897-36303916 | MS.gene82614:intron | 10.0% |
| !!! | TTTATTTTTGAGAAAATTTA+TGG | + | chr3.1:36302815-36302834 | MS.gene82614:intron | 10.0% |
| !!! | TTTTTAATTAAAAATCTATG+TGG | + | chr3.1:36302371-36302390 | MS.gene82614:intron | 10.0% |
| !! | AGTTTAACATAATCATATAA+TGG | + | chr3.1:36303178-36303197 | MS.gene82614:intron | 15.0% |
| !! | ATATTAGACAAAATACATTA+TGG | - | chr3.1:36302422-36302441 | None:intergenic | 15.0% |
| !! | CATCTAAATTGAAATTATTT+AGG | - | chr3.1:36302550-36302569 | None:intergenic | 15.0% |
| !! | CTCTAAATTGAAATTATTTA+GGG | - | chr3.1:36302313-36302332 | None:intergenic | 15.0% |
| !! | GATAAAAAATAAAGAAGTAA+AGG | - | chr3.1:36301937-36301956 | None:intergenic | 15.0% |
| !! | TAAAAAAAAAAAAAGGTGAA+GGG | + | chr3.1:36302957-36302976 | MS.gene82614:intron | 15.0% |
| !! | TTAAAAAAAAAAAAAGGTGA+AGG | + | chr3.1:36302956-36302975 | MS.gene82614:intron | 15.0% |
| !! | TTAACACAATTAAATAATTC+AGG | - | chr3.1:36304567-36304586 | None:intergenic | 15.0% |
| !! | TTATAAAAACAAACAACTTA+TGG | - | chr3.1:36303411-36303430 | None:intergenic | 15.0% |
| !!! | CAGTCTTTTAAATTATAAAA+TGG | + | chr3.1:36301961-36301980 | MS.gene82614:intron | 15.0% |
| !!! | TATAATTTTCTAAAAAGGTA+AGG | + | chr3.1:36303902-36303921 | MS.gene82614:intron | 15.0% |
| !!! | TTTTTTTTTTATATCAGAAG+AGG | + | chr3.1:36304007-36304026 | MS.gene82614:intron | 15.0% |
| !! | AAAAAAAAAAAAAGGTGAAG+GGG | + | chr3.1:36302958-36302977 | MS.gene82614:intron | 20.0% |
| !! | AAAAATATAGTTACGCTTTA+TGG | - | chr3.1:36303527-36303546 | None:intergenic | 20.0% |
| !! | AAATTTACTAGTATTCCTTT+AGG | - | chr3.1:36302773-36302792 | None:intergenic | 20.0% |
| !! | AATAAATACGTCAATTCAAA+CGG | + | chr3.1:36303500-36303519 | MS.gene82614:intron | 20.0% |
| !! | CCTAAATAATTTCAATTTAG+AGG | + | chr3.1:36302311-36302330 | MS.gene82614:intron | 20.0% |
| !! | CCTCTAAATTGAAATTATTT+AGG | - | chr3.1:36302314-36302333 | None:intergenic | 20.0% |
| !! | GAAACTTAAAAACAAAGTAA+CGG | - | chr3.1:36301992-36302011 | None:intergenic | 20.0% |
| !! | GATATAACAAATATATCATG+CGG | + | chr3.1:36301879-36301898 | MS.gene82614:intron | 20.0% |
| !! | TATAGAATTGAACATTAGAA+GGG | - | chr3.1:36302917-36302936 | None:intergenic | 20.0% |
| !! | TTTAACCAATACATAAATGA+TGG | + | chr3.1:36304033-36304052 | MS.gene82614:CDS | 20.0% |
| !!! | AAAAATGAATATTTTGTCCA+TGG | + | chr3.1:36303656-36303675 | MS.gene82614:intron | 20.0% |
| !!! | AAAATGAATATTTTGTCCAT+GGG | + | chr3.1:36303657-36303676 | MS.gene82614:intron | 20.0% |
| !!! | AAAGCGTAACTATATTTTTA+AGG | + | chr3.1:36303528-36303547 | MS.gene82614:intron | 20.0% |
| !!! | AACTTTTGAAATGATTTCAA+AGG | - | chr3.1:36303796-36303815 | None:intergenic | 20.0% |
| !!! | AAGAATATGCTTTAAAATCA+TGG | + | chr3.1:36304667-36304686 | MS.gene82614:CDS | 20.0% |
| !!! | AAGCGTAACTATATTTTTAA+GGG | + | chr3.1:36303529-36303548 | MS.gene82614:intron | 20.0% |
| !!! | AGTAAAATTCTTCTAAAATG+AGG | - | chr3.1:36303222-36303241 | None:intergenic | 20.0% |
| !!! | ATTCAAATTTCTCTAAAAAG+TGG | - | chr3.1:36302883-36302902 | None:intergenic | 20.0% |
| !!! | ATTTTAATGGTTCAATTTCT+TGG | + | chr3.1:36302245-36302264 | MS.gene82614:intron | 20.0% |
| !!! | CGAAATTTTTTTAACACATT+TGG | + | chr3.1:36302680-36302699 | MS.gene82614:intron | 20.0% |
| !!! | GAATGTAGTTTTAATATCAT+TGG | + | chr3.1:36303556-36303575 | MS.gene82614:intron | 20.0% |
| !!! | TAAAGTTGATGTGTATATAA+CGG | + | chr3.1:36302028-36302047 | MS.gene82614:intron | 20.0% |
| !!! | TAAGCAATTTTTGATAGAAA+TGG | + | chr3.1:36302656-36302675 | MS.gene82614:intron | 20.0% |
| ! | AATTGTGTTAAAAAACGCAT+TGG | + | chr3.1:36304576-36304595 | MS.gene82614:CDS | 25.0% |
| ! | ACTTACCATCATTTATGTAT+TGG | - | chr3.1:36304041-36304060 | None:intergenic | 25.0% |
| ! | CATAATTACTTCTCAAGATA+AGG | - | chr3.1:36303086-36303105 | None:intergenic | 25.0% |
| ! | GTATAGAATTGAACATTAGA+AGG | - | chr3.1:36302918-36302937 | None:intergenic | 25.0% |
| ! | GTCTAATATGATGAATTCAA+TGG | + | chr3.1:36302203-36302222 | MS.gene82614:intron | 25.0% |
| ! | TCTCAAAGACAATTGTAAAA+TGG | + | chr3.1:36303738-36303757 | MS.gene82614:intron | 25.0% |
| ! | TTAAAATCGGATATTGATAC+CGG | + | chr3.1:36304615-36304634 | MS.gene82614:CDS | 25.0% |
| ! | TTGAAATGATTTCAAAGGTA+AGG | - | chr3.1:36303791-36303810 | None:intergenic | 25.0% |
| ! | TTGACATATGAGCATAAAAA+AGG | + | chr3.1:36302396-36302415 | MS.gene82614:intron | 25.0% |
| !! | AAAAGGTAAGGATTAACTTT+TGG | + | chr3.1:36303914-36303933 | MS.gene82614:intron | 25.0% |
| !! | AAATGAATATTTTGTCCATG+GGG | + | chr3.1:36303658-36303677 | MS.gene82614:intron | 25.0% |
| !! | AAGAACTTTTTACTTTCTAG+GGG | + | chr3.1:36304423-36304442 | MS.gene82614:CDS | 25.0% |
| !! | CAAGAACTTTTTACTTTCTA+GGG | + | chr3.1:36304422-36304441 | MS.gene82614:CDS | 25.0% |
| !! | CATTATTCAAGTCTTATCTA+AGG | + | chr3.1:36301840-36301859 | MS.gene82614:intron | 25.0% |
| !! | GACTTTGATGATTCTATTAA+GGG | + | chr3.1:36304261-36304280 | MS.gene82614:CDS | 25.0% |
| !! | GATTGGAATGATGATTTTAA+TGG | + | chr3.1:36302232-36302251 | MS.gene82614:intron | 25.0% |
| !! | TCAAGAACTTTTTACTTTCT+AGG | + | chr3.1:36304421-36304440 | MS.gene82614:CDS | 25.0% |
| !! | TGACTTTGATGATTCTATTA+AGG | + | chr3.1:36304260-36304279 | MS.gene82614:CDS | 25.0% |
| !! | TTATGTCTCTAAAAGTTACA+AGG | - | chr3.1:36303709-36303728 | None:intergenic | 25.0% |
| !!! | GGTCGTTAATTTTATTTACA+AGG | + | chr3.1:36303759-36303778 | MS.gene82614:intron | 25.0% |
| !!! | GTAACTATATTTTTAAGGGA+GGG | + | chr3.1:36303533-36303552 | MS.gene82614:intron | 25.0% |
| !!! | TAACTATATTTTTAAGGGAG+GGG | + | chr3.1:36303534-36303553 | MS.gene82614:intron | 25.0% |
| !!! | TAGTTTTAATATCATTGGAG+AGG | + | chr3.1:36303561-36303580 | MS.gene82614:intron | 25.0% |
| AAAAGACCGCAAAATGTATT+TGG | + | chr3.1:36302747-36302766 | MS.gene82614:intron | 30.0% | |
| AAAATGCCAAAGATCAAAGA+AGG | + | chr3.1:36304106-36304125 | MS.gene82614:CDS | 30.0% | |
| ACCAATTGAGATGATTTCAA+AGG | + | chr3.1:36303832-36303851 | MS.gene82614:intron | 30.0% | |
| ACCTCGAATAAAAATTGACT+AGG | + | chr3.1:36302124-36302143 | MS.gene82614:intron | 30.0% | |
| AGCTAGAGAATGCTTAAAAT+CGG | + | chr3.1:36304602-36304621 | MS.gene82614:CDS | 30.0% | |
| ATCGGTAAAGAGAAATATAG+TGG | + | chr3.1:36304081-36304100 | MS.gene82614:CDS | 30.0% | |
| GTCTAATATGACGATTTCAA+TGG | + | chr3.1:36302433-36302452 | MS.gene82614:intron | 30.0% | |
| TAAAGCTATCTTGATTCACA+AGG | - | chr3.1:36304296-36304315 | None:intergenic | 30.0% | |
| TAATGGTTCAATTTCTTGGT+TGG | + | chr3.1:36302249-36302268 | MS.gene82614:intron | 30.0% | |
| TAGAATCATCAAAGTCACTT+AGG | - | chr3.1:36304257-36304276 | None:intergenic | 30.0% | |
| TATCCATGCTAGAGATTTAA+TGG | + | chr3.1:36304317-36304336 | MS.gene82614:CDS | 30.0% | |
| TCTCTATACTCATACATCTA+GGG | - | chr3.1:36304836-36304855 | None:intergenic | 30.0% | |
| TTGAGATGATTTCAAAGGTA+AGG | + | chr3.1:36303837-36303856 | MS.gene82614:intron | 30.0% | |
| TTTCTCTCAAGCATCTTTAA+AGG | - | chr3.1:36303130-36303149 | None:intergenic | 30.0% | |
| ! | AATGACAATGCAAAGTTTTG+TGG | + | chr3.1:36304207-36304226 | MS.gene82614:CDS | 30.0% |
| ! | CTAAGGTATCTCAAGTTAAA+AGG | + | chr3.1:36301857-36301876 | MS.gene82614:intron | 30.0% |
| ! | TTGCATTGTCATTTAGAGAA+GGG | - | chr3.1:36304200-36304219 | None:intergenic | 30.0% |
| ! | TTTAGGCCAAATACATTTTG+CGG | - | chr3.1:36302756-36302775 | None:intergenic | 30.0% |
| ! | TTTGCATTGTCATTTAGAGA+AGG | - | chr3.1:36304201-36304220 | None:intergenic | 30.0% |
| ! | TTTTGATGCTCATAGTCATA+TGG | - | chr3.1:36302628-36302647 | None:intergenic | 30.0% |
| !! | ACCTTTGAAATCATCTCAAT+TGG | - | chr3.1:36303836-36303855 | None:intergenic | 30.0% |
| !! | CGTAACTATATTTTTAAGGG+AGG | + | chr3.1:36303532-36303551 | MS.gene82614:intron | 30.0% |
| AAGATAAGGTGATAGCTCAA+TGG | - | chr3.1:36303072-36303091 | None:intergenic | 35.0% | |
| AAGATACCTTGACAAGCTTA+TGG | + | chr3.1:36303429-36303448 | MS.gene82614:intron | 35.0% | |
| AGAATTGAACATTAGAAGGG+AGG | - | chr3.1:36302914-36302933 | None:intergenic | 35.0% | |
| ATCAGCTGTGAAACATTCAT+CGG | - | chr3.1:36303009-36303028 | None:intergenic | 35.0% | |
| CAGAAGAAGGTTAAAGAAGA+AGG | - | chr3.1:36302154-36302173 | None:intergenic | 35.0% | |
| GAATAATGTGTACATACCTG+TGG | - | chr3.1:36301828-36301847 | None:intergenic | 35.0% | |
| GAATTCAATGGATCGTAGAT+TGG | + | chr3.1:36302215-36302234 | MS.gene82614:intron | 35.0% | |
| GCAAAATGTATTTGGCCTAA+AGG | + | chr3.1:36302755-36302774 | MS.gene82614:intron | 35.0% | |
| GCGAGTAATCGATATTTGTA+TGG | + | chr3.1:36304339-36304358 | MS.gene82614:CDS | 35.0% | |
| GGAATCAAAAGAAGAAGACA+TGG | + | chr3.1:36304383-36304402 | MS.gene82614:CDS | 35.0% | |
| GTCTCTATACTCATACATCT+AGG | - | chr3.1:36304837-36304856 | None:intergenic | 35.0% | |
| TATAGCTTTCAAACCTTGTG+AGG | + | chr3.1:36301728-36301747 | MS.gene82614:CDS | 35.0% | |
| TATGATCCATAAGCTTGTCA+AGG | - | chr3.1:36303438-36303457 | None:intergenic | 35.0% | |
| TCAAGCTGAAGTTCGTAAAT+GGG | + | chr3.1:36304488-36304507 | MS.gene82614:CDS | 35.0% | |
| TCTATCATGTTCTGCACTAT+CGG | + | chr3.1:36304143-36304162 | MS.gene82614:CDS | 35.0% | |
| TGAGTTCCTTCTTTGATCTT+TGG | - | chr3.1:36304115-36304134 | None:intergenic | 35.0% | |
| TTCAAGCTGAAGTTCGTAAA+TGG | + | chr3.1:36304487-36304506 | MS.gene82614:CDS | 35.0% | |
| ! | AAAATTTTCGAAGCTCGTCA+TGG | + | chr3.1:36304752-36304771 | MS.gene82614:CDS | 35.0% |
| ! | AAACTTCCGACTTGAAAAAC+CGG | - | chr3.1:36304637-36304656 | None:intergenic | 35.0% |
| ! | GCCTAGTCAATTTTTATTCG+AGG | - | chr3.1:36302128-36302147 | None:intergenic | 35.0% |
| ! | TGCATTGTCATTTAGAGAAG+GGG | - | chr3.1:36304199-36304218 | None:intergenic | 35.0% |
| !! | TGCTTTAAAATCATGGACAG+TGG | + | chr3.1:36304674-36304693 | MS.gene82614:CDS | 35.0% |
| !! | TTCTAGTTCTAAAGATCCAC+AGG | + | chr3.1:36301809-36301828 | MS.gene82614:CDS | 35.0% |
| !!! | GCTACTAGTTTTGAACTCAT+CGG | + | chr3.1:36304063-36304082 | MS.gene82614:CDS | 35.0% |
| !!! | TTGATACCGGTTTTTCAAGT+CGG | + | chr3.1:36304628-36304647 | MS.gene82614:CDS | 35.0% |
| ACTACGAAAGTTGCAGAAGA+AGG | - | chr3.1:36302167-36302186 | None:intergenic | 40.0% | |
| CATCATGCTCGTCATAGATT+GGG | - | chr3.1:36304790-36304809 | None:intergenic | 40.0% | |
| GAGCATAGCATGTTTCATGT+TGG | - | chr3.1:36304523-36304542 | None:intergenic | 40.0% | |
| GATAGTGCAGAACATGATAG+AGG | - | chr3.1:36304144-36304163 | None:intergenic | 40.0% | |
| TCATCATGCTCGTCATAGAT+TGG | - | chr3.1:36304791-36304810 | None:intergenic | 40.0% | |
| TCGCCATTAAATCTCTAGCA+TGG | - | chr3.1:36304323-36304342 | None:intergenic | 40.0% | |
| ! | CTCTCAAGCATCTTTAAAGG+AGG | - | chr3.1:36303127-36303146 | None:intergenic | 40.0% |
| ! | GCATTGTCATTTAGAGAAGG+GGG | - | chr3.1:36304198-36304217 | None:intergenic | 40.0% |
| !! | GAATAACTGGTCTTGGAAGA+TGG | - | chr3.1:36304452-36304471 | None:intergenic | 40.0% |
| AGCTTGAAACCTAGGTCCAA+TGG | - | chr3.1:36304475-36304494 | None:intergenic | 45.0% | |
| ATAGAGACCAGATCTCCCTT+AGG | + | chr3.1:36304849-36304868 | MS.gene82614:CDS | 45.0% | |
| ATGCTCGTCATAGATTGGGA+TGG | - | chr3.1:36304786-36304805 | None:intergenic | 45.0% | |
| CAGTTATTCCCATTGGACCT+AGG | + | chr3.1:36304463-36304482 | MS.gene82614:CDS | 45.0% | |
| CCAAGACCAGTTATTCCCAT+TGG | + | chr3.1:36304456-36304475 | MS.gene82614:CDS | 45.0% | |
| CGAACTTCAGCTTGAAACCT+AGG | - | chr3.1:36304483-36304502 | None:intergenic | 45.0% | |
| CTAGGTCCAATGGGAATAAC+TGG | - | chr3.1:36304465-36304484 | None:intergenic | 45.0% | |
| GCACTATCGGATGAAACACA+AGG | + | chr3.1:36304156-36304175 | MS.gene82614:CDS | 45.0% | |
| GCTGAAGTTCGTAAATGGGA+TGG | + | chr3.1:36304492-36304511 | MS.gene82614:CDS | 45.0% | |
| GCTTGAAACCTAGGTCCAAT+GGG | - | chr3.1:36304474-36304493 | None:intergenic | 45.0% | |
| TATCGAGACATCAATCGAGG+AGG | + | chr3.1:36304362-36304381 | MS.gene82614:CDS | 45.0% | |
| TCACGATCAACTGCACCTAA+GGG | - | chr3.1:36304867-36304886 | None:intergenic | 45.0% | |
| TGTGATGACTTCTCCTCACA+AGG | - | chr3.1:36301744-36301763 | None:intergenic | 45.0% | |
| TTCACGATCAACTGCACCTA+AGG | - | chr3.1:36304868-36304887 | None:intergenic | 45.0% | |
| ! | CCAATGGGAATAACTGGTCT+TGG | - | chr3.1:36304459-36304478 | None:intergenic | 45.0% |
| ! | GTACTGACGTGACAATGACA+AGG | + | chr3.1:36302050-36302069 | MS.gene82614:intron | 45.0% |
| ! | TCCATGGGGTGCAAATTTTG+CGG | + | chr3.1:36303672-36303691 | MS.gene82614:intron | 45.0% |
| ! | TGGTATCGAGACATCAATCG+AGG | + | chr3.1:36304359-36304378 | MS.gene82614:CDS | 45.0% |
| !! | AGTAATTTAAAAAAAAAAAA+AGG | + | chr3.1:36302950-36302969 | MS.gene82614:intron | 5.0% |
| AACTGCACCTAAGGGAGATC+TGG | - | chr3.1:36304859-36304878 | None:intergenic | 50.0% | |
| ACCGCAAAATTTGCACCCCA+TGG | - | chr3.1:36303676-36303695 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 36301711 | 36304902 | 36301711 | ID=MS.gene82614 |
| chr3.1 | mRNA | 36301711 | 36304902 | 36301711 | ID=MS.gene82614.t1;Parent=MS.gene82614 |
| chr3.1 | exon | 36301711 | 36301830 | 36301711 | ID=MS.gene82614.t1.exon1;Parent=MS.gene82614.t1 |
| chr3.1 | CDS | 36301711 | 36301830 | 36301711 | ID=cds.MS.gene82614.t1;Parent=MS.gene82614.t1 |
| chr3.1 | exon | 36304024 | 36304902 | 36304024 | ID=MS.gene82614.t1.exon2;Parent=MS.gene82614.t1 |
| chr3.1 | CDS | 36304024 | 36304902 | 36304024 | ID=cds.MS.gene82614.t1;Parent=MS.gene82614.t1 |
| Gene Sequence |
| Protein sequence |
