Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83175.t1 | XP_024638675.1 | 96.6 | 290 | 10 | 0 | 1 | 290 | 1 | 290 | 8.90E-147 | 529.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83175.t1 | O49460 | 83.9 | 286 | 46 | 0 | 4 | 289 | 2 | 287 | 1.2e-131 | 470.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83175.t1 | G7JSU6 | 96.6 | 290 | 10 | 0 | 1 | 290 | 4 | 293 | 6.4e-147 | 529.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene83175 | 0.815621 | 8.42E-52 | -1.69E-46 |
| MS.gene050252 | MS.gene83175 | 0.815234 | 1.03E-51 | -1.69E-46 |
| MS.gene057272 | MS.gene83175 | 0.839208 | 1.82E-57 | -1.69E-46 |
| MS.gene057643 | MS.gene83175 | 0.805991 | 1.02E-49 | -1.69E-46 |
| MS.gene060483 | MS.gene83175 | 0.842847 | 2.01E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83175.t1 | MTR_4g078200 | 96.552 | 290 | 10 | 0 | 1 | 290 | 4 | 293 | 0.0 | 569 |
| MS.gene83175.t1 | MTR_2g090760 | 86.063 | 287 | 40 | 0 | 3 | 289 | 1 | 287 | 0.0 | 501 |
| MS.gene83175.t1 | MTR_4g078200 | 96.970 | 231 | 7 | 0 | 60 | 290 | 2 | 232 | 1.83e-162 | 451 |
| MS.gene83175.t1 | MTR_8g046300 | 53.689 | 244 | 112 | 1 | 28 | 270 | 22 | 265 | 1.03e-89 | 268 |
| MS.gene83175.t1 | MTR_3g008250 | 50.943 | 265 | 128 | 2 | 17 | 279 | 10 | 274 | 3.87e-89 | 267 |
| MS.gene83175.t1 | MTR_5g093030 | 32.143 | 168 | 112 | 2 | 28 | 194 | 22 | 188 | 6.97e-25 | 99.0 |
| MS.gene83175.t1 | MTR_6g004320 | 34.483 | 145 | 57 | 1 | 98 | 242 | 1 | 107 | 4.69e-18 | 78.2 |
| MS.gene83175.t1 | MTR_5g093040 | 33.684 | 95 | 57 | 1 | 28 | 122 | 18 | 106 | 1.36e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83175.t1 | AT4G28510 | 83.624 | 287 | 47 | 0 | 3 | 289 | 1 | 287 | 5.34e-168 | 467 |
| MS.gene83175.t1 | AT1G03860 | 80.351 | 285 | 54 | 1 | 1 | 285 | 1 | 283 | 3.13e-167 | 465 |
| MS.gene83175.t1 | AT1G03860 | 80.351 | 285 | 54 | 1 | 1 | 285 | 1 | 283 | 3.13e-167 | 465 |
| MS.gene83175.t1 | AT2G20530 | 80.345 | 290 | 53 | 1 | 1 | 290 | 1 | 286 | 7.60e-167 | 464 |
| MS.gene83175.t1 | AT2G20530 | 80.345 | 290 | 53 | 1 | 1 | 290 | 1 | 286 | 7.60e-167 | 464 |
| MS.gene83175.t1 | AT5G44140 | 73.741 | 278 | 73 | 0 | 3 | 280 | 1 | 278 | 2.38e-151 | 424 |
| MS.gene83175.t1 | AT1G03860 | 85.780 | 218 | 31 | 0 | 68 | 285 | 1 | 218 | 1.29e-129 | 367 |
| MS.gene83175.t1 | AT3G27280 | 50.189 | 265 | 130 | 2 | 17 | 279 | 11 | 275 | 2.25e-89 | 267 |
| MS.gene83175.t1 | AT3G27280 | 50.189 | 265 | 130 | 2 | 17 | 279 | 11 | 275 | 2.25e-89 | 267 |
| MS.gene83175.t1 | AT5G40770 | 51.765 | 255 | 122 | 1 | 17 | 270 | 11 | 265 | 3.55e-88 | 264 |
| MS.gene83175.t1 | AT5G14300 | 45.339 | 236 | 102 | 2 | 36 | 270 | 22 | 231 | 2.31e-69 | 215 |
Find 72 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAATCAATTGAGCACTTT+TGG | 0.231448 | 4.2:-31828988 | None:intergenic |
| CTTGGTGGACTTGCTGTCTA+TGG | 0.237252 | 4.2:+31825714 | MS.gene83175:CDS |
| TTGATTAAAGTTAGCATTCT+TGG | 0.252178 | 4.2:+31825696 | MS.gene83175:CDS |
| GAATCTCCAGGATTTAAAAT+TGG | 0.279612 | 4.2:+31829133 | MS.gene83175:CDS |
| TTCGATAGACCGTTGGTAAT+TGG | 0.291628 | 4.2:-31827999 | None:intergenic |
| CATTTAGTGGAGAGCACTTC+AGG | 0.305741 | 4.2:+31827012 | MS.gene83175:CDS |
| CATCCAGTGCAATGTTGAAT+TGG | 0.307846 | 4.2:-31828364 | None:intergenic |
| CCACCACCACCGGGAACCTT+TGG | 0.317038 | 4.2:-31825663 | None:intergenic |
| TCTATCACAAGTTTGACTTT+TGG | 0.348882 | 4.2:+31828392 | MS.gene83175:CDS |
| ATCATAATATGTGTTCCTTC+AGG | 0.372217 | 4.2:-31826943 | None:intergenic |
| TGCATTCAAGAAAACCTTGT+TGG | 0.399906 | 4.2:-31829096 | None:intergenic |
| GTCTATAAATGCAGGGTTGT+TGG | 0.403645 | 4.2:-31829021 | None:intergenic |
| CACCACCACCGGGAACCTTT+GGG | 0.411013 | 4.2:-31825662 | None:intergenic |
| GTCAAGATCCCAAAGGTTCC+CGG | 0.419171 | 4.2:+31825654 | MS.gene83175:CDS |
| TTCCTCAAGTCTATAAATGC+AGG | 0.423117 | 4.2:-31829029 | None:intergenic |
| ATTGTCTTTAACCGTGTTGT+TGG | 0.431088 | 4.2:+31825780 | MS.gene83175:CDS |
| ATCCCAAAGGTTCCCGGTGG+TGG | 0.434393 | 4.2:+31825660 | MS.gene83175:CDS |
| GCCAAAAGTGCTCAATTGAT+TGG | 0.439483 | 4.2:+31828987 | MS.gene83175:CDS |
| AGGCTGTTAGTCGAGAAATA+AGG | 0.442888 | 4.2:+31828318 | MS.gene83175:intron |
| TTCTTGAGCAGCAACCTGCT+TGG | 0.447199 | 4.2:-31828441 | None:intergenic |
| TCGTGCACGACCTCATTTAG+TGG | 0.454933 | 4.2:+31826999 | MS.gene83175:CDS |
| AGCGTTTCATGTATAATAGA+AGG | 0.462263 | 4.2:-31828054 | None:intergenic |
| ATCCAGTGCAATGTTGAATT+GGG | 0.464199 | 4.2:-31828363 | None:intergenic |
| CCAAAGGTTCCCGGTGGTGG+TGG | 0.465351 | 4.2:+31825663 | MS.gene83175:CDS |
| AACACTTTGTATAATGTTGA+GGG | 0.467807 | 4.2:+31825744 | MS.gene83175:CDS |
| GGATCTCTTGCTGAATCTCC+AGG | 0.469133 | 4.2:+31829121 | MS.gene83175:CDS |
| TGTTGTTGGTGTCAAGGATA+AGG | 0.472048 | 4.2:+31825794 | MS.gene83175:CDS |
| ATCACAGGCCTCTCAAACCA+TGG | 0.472479 | 4.2:-31826967 | None:intergenic |
| ACATAACTATTTCTTTCCAC+TGG | 0.472566 | 4.2:-31829159 | None:intergenic |
| AGCAGAAATTCCACCACCAC+CGG | 0.480850 | 4.2:-31825673 | None:intergenic |
| AGCTGCAATTGAAGCCAAGC+AGG | 0.481447 | 4.2:+31828427 | MS.gene83175:CDS |
| ACCAACGGTCTATCGAACTC+TGG | 0.482518 | 4.2:+31828005 | MS.gene83175:CDS |
| TAAGGAAGATATTGACTGAA+AGG | 0.495116 | 4.2:+31828336 | MS.gene83175:CDS |
| TAGACCGTTGGTAATTGGTC+TGG | 0.503898 | 4.2:-31827994 | None:intergenic |
| TAACCGTGTTGTTGGTGTCA+AGG | 0.506383 | 4.2:+31825788 | MS.gene83175:CDS |
| ATTAAAGTTAGCATTCTTGG+TGG | 0.509506 | 4.2:+31825699 | MS.gene83175:CDS |
| AAGGAAGATATTGACTGAAA+GGG | 0.510989 | 4.2:+31828337 | MS.gene83175:CDS |
| AAATTACCATTTGGAGATCA+CGG | 0.515095 | 4.2:-31827038 | None:intergenic |
| TGGGTGAGAATTATAATGAA+AGG | 0.516327 | 4.2:+31828025 | MS.gene83175:CDS |
| GAGGAAAATTGAAGCTGCTA+GGG | 0.523704 | 4.2:+31829046 | MS.gene83175:CDS |
| GGGTGAGAATTATAATGAAA+GGG | 0.533630 | 4.2:+31828026 | MS.gene83175:CDS |
| AAACACTTTGTATAATGTTG+AGG | 0.536366 | 4.2:+31825743 | MS.gene83175:CDS |
| ACCCTGCATTTATAGACTTG+AGG | 0.536732 | 4.2:+31829027 | MS.gene83175:CDS |
| AAGTGCTATTATTAGAGCAC+AGG | 0.538979 | 4.2:+31828511 | MS.gene83175:CDS |
| GTTGGTAATTGGTCTGGCAC+GGG | 0.547210 | 4.2:-31827988 | None:intergenic |
| TCCTCAAGTCTATAAATGCA+GGG | 0.549653 | 4.2:-31829028 | None:intergenic |
| TGAGGAAAATTGAAGCTGCT+AGG | 0.555994 | 4.2:+31829045 | MS.gene83175:CDS |
| CGTTGGTAATTGGTCTGGCA+CGG | 0.557172 | 4.2:-31827989 | None:intergenic |
| CTCCCAATTCAACATTGCAC+TGG | 0.559449 | 4.2:+31828361 | MS.gene83175:CDS |
| TTATGATCCCATGGTTTGAG+AGG | 0.566462 | 4.2:+31826959 | MS.gene83175:CDS |
| AATTGCAAATTCTGCCAACA+AGG | 0.567716 | 4.2:+31829082 | MS.gene83175:CDS |
| AGGAAGCCGTGATCTCCAAA+TGG | 0.568285 | 4.2:+31827032 | MS.gene83175:CDS |
| TATATGCAGGTCTATCCTGA+AGG | 0.571690 | 4.2:+31826928 | MS.gene83175:intron |
| CCAACGGTCTATCGAACTCT+GGG | 0.576164 | 4.2:+31828006 | MS.gene83175:CDS |
| GAAGTGCTCTCCACTAAATG+AGG | 0.579441 | 4.2:-31827009 | None:intergenic |
| AGCTGCTAGGGAAATCGCTA+AGG | 0.579747 | 4.2:+31829058 | MS.gene83175:CDS |
| GAACACATATTATGATCCCA+TGG | 0.591378 | 4.2:+31826950 | MS.gene83175:CDS |
| TTTCATGTATAATAGAAGGC+AGG | 0.592510 | 4.2:-31828050 | None:intergenic |
| GATTTAAAATTGGAGTCCAG+TGG | 0.610027 | 4.2:+31829143 | MS.gene83175:CDS |
| CCCAGAGTTCGATAGACCGT+TGG | 0.613107 | 4.2:-31828006 | None:intergenic |
| TCACAGGCCTCTCAAACCAT+GGG | 0.623389 | 4.2:-31826966 | None:intergenic |
| CAGTGCAATGTTGAATTGGG+AGG | 0.624755 | 4.2:-31828360 | None:intergenic |
| GCACGAACATCATAGATCAC+AGG | 0.624896 | 4.2:-31826982 | None:intergenic |
| GCAGAAATTCCACCACCACC+GGG | 0.625221 | 4.2:-31825672 | None:intergenic |
| ACATGAAACGCTCAAATCTG+TGG | 0.625780 | 4.2:+31828065 | MS.gene83175:CDS |
| TCAGCTCATTACTCAGAGAG+AGG | 0.636764 | 4.2:+31828107 | MS.gene83175:CDS |
| TATCCTTGACACCAACAACA+CGG | 0.647254 | 4.2:-31825791 | None:intergenic |
| CAACAACGTCAAGATCCCAA+AGG | 0.651733 | 4.2:+31825647 | MS.gene83175:CDS |
| ACTTTGTATAATGTTGAGGG+TGG | 0.664841 | 4.2:+31825747 | MS.gene83175:CDS |
| TCTCTGAGTAATGAGCTGAC+TGG | 0.669211 | 4.2:-31828103 | None:intergenic |
| CGTGCCAGACCAATTACCAA+CGG | 0.684962 | 4.2:+31827990 | MS.gene83175:CDS |
| AAGATCCCAAAGGTTCCCGG+TGG | 0.741647 | 4.2:+31825657 | MS.gene83175:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGAAACATATTAAAAT+AGG | - | chr4.2:31826834-31826853 | None:intergenic | 10.0% |
| !! | ATAATAATGAATATGAATTA+TGG | - | chr4.2:31827715-31827734 | None:intergenic | 10.0% |
| !! | TAATAATGAATATGAATTAT+GGG | - | chr4.2:31827714-31827733 | None:intergenic | 10.0% |
| !!! | TAATTTTATTTTGTATGATT+TGG | - | chr4.2:31828629-31828648 | None:intergenic | 10.0% |
| !!! | TTTTTTAATAAGTCAATTTT+GGG | - | chr4.2:31826105-31826124 | None:intergenic | 10.0% |
| !!! | TTTTTTTAATAAGTCAATTT+TGG | - | chr4.2:31826106-31826125 | None:intergenic | 10.0% |
| !! | CAATAATATGATAAAAATGA+CGG | - | chr4.2:31826406-31826425 | None:intergenic | 15.0% |
| !! | CATATTAAAATAGGTTTAAT+AGG | - | chr4.2:31826825-31826844 | None:intergenic | 15.0% |
| !!! | CTACTTTAATTTATTATGAT+GGG | - | chr4.2:31827467-31827486 | None:intergenic | 15.0% |
| !!! | TCTACTTTAATTTATTATGA+TGG | - | chr4.2:31827468-31827487 | None:intergenic | 15.0% |
| !!! | TTTTTAATAAGTCAATTTTG+GGG | - | chr4.2:31826104-31826123 | None:intergenic | 15.0% |
| !! | AAAAAGCTTCTATACTAAAA+AGG | - | chr4.2:31826455-31826474 | None:intergenic | 20.0% |
| !! | AAACAAAAGAAATTACCATT+TGG | - | chr4.2:31827050-31827069 | None:intergenic | 20.0% |
| !! | AGTGTACATAGTAATAATTA+GGG | + | chr4.2:31827506-31827525 | MS.gene83175:intron | 20.0% |
| !! | CAACATTAAAATGACTTTAA+TGG | - | chr4.2:31827203-31827222 | None:intergenic | 20.0% |
| !! | CATAAACTGAACTAAAAAAT+AGG | + | chr4.2:31826658-31826677 | MS.gene83175:intron | 20.0% |
| !! | TAGTGTACATAGTAATAATT+AGG | + | chr4.2:31827505-31827524 | MS.gene83175:intron | 20.0% |
| !! | TATATTGATATACTACAACA+AGG | - | chr4.2:31826897-31826916 | None:intergenic | 20.0% |
| !! | TTTGAGAAAAAAGTTCAATA+GGG | - | chr4.2:31828897-31828916 | None:intergenic | 20.0% |
| !!! | AACTAACAATTCAGTTTTTT+AGG | + | chr4.2:31826734-31826753 | MS.gene83175:intron | 20.0% |
| !!! | AGAATATCATTTTAGATGAT+TGG | + | chr4.2:31826172-31826191 | MS.gene83175:intron | 20.0% |
| !!! | CTATTTTAATATGTTTCGTT+AGG | + | chr4.2:31826848-31826867 | MS.gene83175:intron | 20.0% |
| !!! | GAATATCATTTTAGATGATT+GGG | + | chr4.2:31826173-31826192 | MS.gene83175:intron | 20.0% |
| !!! | TCTAAAATGATCCAAATTAT+AGG | + | chr4.2:31828298-31828317 | MS.gene83175:intron | 20.0% |
| !!! | TTTAATCTTCTTCTTTGTTT+AGG | + | chr4.2:31826244-31826263 | MS.gene83175:intron | 20.0% |
| !!! | TTTAGTATAGAAGCTTTTTA+GGG | + | chr4.2:31826456-31826475 | MS.gene83175:intron | 20.0% |
| !!! | TTTTAGTATAGAAGCTTTTT+AGG | + | chr4.2:31826455-31826474 | MS.gene83175:intron | 20.0% |
| !!! | TTTTGAGAAAAAAGTTCAAT+AGG | - | chr4.2:31828898-31828917 | None:intergenic | 20.0% |
| ! | AAAAAGTAACTCCTATGTAT+TGG | - | chr4.2:31828922-31828941 | None:intergenic | 25.0% |
| ! | AAAAGTAACTCCTATGTATT+GGG | - | chr4.2:31828921-31828940 | None:intergenic | 25.0% |
| ! | AAAATGAATCACAATCATAC+AGG | + | chr4.2:31828261-31828280 | MS.gene83175:intron | 25.0% |
| ! | AAACACTTTGTATAATGTTG+AGG | + | chr4.2:31825743-31825762 | MS.gene83175:CDS | 25.0% |
| ! | AACACTTTGTATAATGTTGA+GGG | + | chr4.2:31825744-31825763 | MS.gene83175:CDS | 25.0% |
| ! | AACATAAATTTCGAATTCCA+TGG | - | chr4.2:31827773-31827792 | None:intergenic | 25.0% |
| ! | AAGATCCATAATAGATTACA+TGG | - | chr4.2:31827926-31827945 | None:intergenic | 25.0% |
| ! | AATGTGATACAATTGAGAAT+TGG | - | chr4.2:31827670-31827689 | None:intergenic | 25.0% |
| ! | ACACAGTAATAAAGTTAGAA+TGG | - | chr4.2:31827832-31827851 | None:intergenic | 25.0% |
| ! | ACTTTAGTACACTTGATTAT+AGG | + | chr4.2:31827109-31827128 | MS.gene83175:intron | 25.0% |
| ! | ATTGTGCATAAGAAAAATGT+GGG | - | chr4.2:31827871-31827890 | None:intergenic | 25.0% |
| ! | CAACTAATACTGGATTAATT+GGG | + | chr4.2:31828164-31828183 | MS.gene83175:intron | 25.0% |
| ! | CATTTCCATGTAATCTATTA+TGG | + | chr4.2:31827918-31827937 | MS.gene83175:intron | 25.0% |
| ! | CTGATTCTAAATTGAAAGTT+CGG | + | chr4.2:31826695-31826714 | MS.gene83175:intron | 25.0% |
| ! | GTGTACATAGTAATAATTAG+GGG | + | chr4.2:31827507-31827526 | MS.gene83175:intron | 25.0% |
| ! | TAAAGTAGAATATGATGCTT+TGG | + | chr4.2:31827479-31827498 | MS.gene83175:intron | 25.0% |
| ! | TAACTAACAGTGAATGAAAA+TGG | - | chr4.2:31825825-31825844 | None:intergenic | 25.0% |
| ! | TAACTTTATTACTGTGTAGA+CGG | + | chr4.2:31827835-31827854 | MS.gene83175:intron | 25.0% |
| ! | TAAGAACAAGAAAAAATAGC+AGG | - | chr4.2:31827075-31827094 | None:intergenic | 25.0% |
| ! | TAGTAAAAATGTAATGTCCT+TGG | - | chr4.2:31827415-31827434 | None:intergenic | 25.0% |
| ! | TATGTGTGTAAAAACCTTAA+AGG | - | chr4.2:31827370-31827389 | None:intergenic | 25.0% |
| ! | TATTGTGCATAAGAAAAATG+TGG | - | chr4.2:31827872-31827891 | None:intergenic | 25.0% |
| ! | TCAACTAATACTGGATTAAT+TGG | + | chr4.2:31828163-31828182 | MS.gene83175:intron | 25.0% |
| ! | TGTACATAGTAATAATTAGG+GGG | + | chr4.2:31827508-31827527 | MS.gene83175:intron | 25.0% |
| ! | TTCAACTTCTCATTACTTAA+TGG | + | chr4.2:31828940-31828959 | MS.gene83175:intron | 25.0% |
| ! | TTGAGAAAAAAGTTCAATAG+GGG | - | chr4.2:31828896-31828915 | None:intergenic | 25.0% |
| ! | TTGATTAAAGTTAGCATTCT+TGG | + | chr4.2:31825696-31825715 | MS.gene83175:CDS | 25.0% |
| !!! | ATGGTTTATTTTTGACATAC+AGG | + | chr4.2:31828959-31828978 | MS.gene83175:intron | 25.0% |
| !!! | TGGTTTATTTTTGACATACA+GGG | + | chr4.2:31828960-31828979 | MS.gene83175:intron | 25.0% |
| !!! | TTTAATGGACTAAACTGAAA+GGG | - | chr4.2:31827188-31827207 | None:intergenic | 25.0% |
| AAATGCAATAATGTTGTCCA+AGG | + | chr4.2:31827395-31827414 | MS.gene83175:intron | 30.0% | |
| AAATTACCATTTGGAGATCA+CGG | - | chr4.2:31827041-31827060 | None:intergenic | 30.0% | |
| AATGTTACAATCTATGACCA+TGG | + | chr4.2:31827753-31827772 | MS.gene83175:intron | 30.0% | |
| ACTAAATTGAAAAGCGAGAA+TGG | + | chr4.2:31827551-31827570 | MS.gene83175:intron | 30.0% | |
| AGCGTTTCATGTATAATAGA+AGG | - | chr4.2:31828057-31828076 | None:intergenic | 30.0% | |
| ATCAAGTGTACTAAAGTACA+TGG | - | chr4.2:31827106-31827125 | None:intergenic | 30.0% | |
| ATCATAATATGTGTTCCTTC+AGG | - | chr4.2:31826946-31826965 | None:intergenic | 30.0% | |
| ATCTTCTGTTCAACTAATAC+TGG | + | chr4.2:31828154-31828173 | MS.gene83175:intron | 30.0% | |
| ATTAAAGTTAGCATTCTTGG+TGG | + | chr4.2:31825699-31825718 | MS.gene83175:CDS | 30.0% | |
| ATTCCAACTGATATGTAAAG+AGG | - | chr4.2:31828196-31828215 | None:intergenic | 30.0% | |
| ATTCTATCATCTCTACAGTA+GGG | - | chr4.2:31826157-31826176 | None:intergenic | 30.0% | |
| GATATAAACTCTGGATAATC+AGG | + | chr4.2:31828703-31828722 | MS.gene83175:intron | 30.0% | |
| GGGTGAGAATTATAATGAAA+GGG | + | chr4.2:31828026-31828045 | MS.gene83175:CDS | 30.0% | |
| GTATTAGTTGAACAGAAGAT+AGG | - | chr4.2:31828154-31828173 | None:intergenic | 30.0% | |
| TATTCTATCATCTCTACAGT+AGG | - | chr4.2:31826158-31826177 | None:intergenic | 30.0% | |
| TCATGTTTCCATAACATAGA+CGG | - | chr4.2:31826347-31826366 | None:intergenic | 30.0% | |
| TGAAACTGTGATACAGATTA+TGG | - | chr4.2:31827900-31827919 | None:intergenic | 30.0% | |
| TGGGTGAGAATTATAATGAA+AGG | + | chr4.2:31828025-31828044 | MS.gene83175:CDS | 30.0% | |
| TGTTTGAGTGATATAAACTC+TGG | + | chr4.2:31828694-31828713 | MS.gene83175:intron | 30.0% | |
| TTATGAACCATCTCATATGT+AGG | - | chr4.2:31828555-31828574 | None:intergenic | 30.0% | |
| TTCAAAATGAGTGTCCTTTA+AGG | + | chr4.2:31827353-31827372 | MS.gene83175:intron | 30.0% | |
| TTGTGCATAAGAAAAATGTG+GGG | - | chr4.2:31827870-31827889 | None:intergenic | 30.0% | |
| TTTCATGTATAATAGAAGGC+AGG | - | chr4.2:31828053-31828072 | None:intergenic | 30.0% | |
| TTTCTCAAAACCCAATACAT+AGG | + | chr4.2:31828908-31828927 | MS.gene83175:intron | 30.0% | |
| ! | AAGGAAGATATTGACTGAAA+GGG | + | chr4.2:31828337-31828356 | MS.gene83175:CDS | 30.0% |
| ! | GAATCTCCAGGATTTAAAAT+TGG | + | chr4.2:31829133-31829152 | MS.gene83175:CDS | 30.0% |
| ! | GATAATAGCAACTTGTCTTT+TGG | + | chr4.2:31827131-31827150 | MS.gene83175:intron | 30.0% |
| ! | TAAGGAAGATATTGACTGAA+AGG | + | chr4.2:31828336-31828355 | MS.gene83175:CDS | 30.0% |
| ! | TAGTATGCCTTTTTATATGC+AGG | + | chr4.2:31826915-31826934 | MS.gene83175:intron | 30.0% |
| ! | TTTAGTTCACAGTTTCAGTT+TGG | + | chr4.2:31826768-31826787 | MS.gene83175:intron | 30.0% |
| !! | AAACGACACTCATTTTGAAA+TGG | + | chr4.2:31827608-31827627 | MS.gene83175:intron | 30.0% |
| !! | AAAGGACACTCATTTTGAAA+CGG | - | chr4.2:31827352-31827371 | None:intergenic | 30.0% |
| !! | CTATCACAAGTTTGACTTTT+GGG | + | chr4.2:31828393-31828412 | MS.gene83175:CDS | 30.0% |
| !! | CTTTAATGGACTAAACTGAA+AGG | - | chr4.2:31827189-31827208 | None:intergenic | 30.0% |
| !! | TCTATCACAAGTTTGACTTT+TGG | + | chr4.2:31828392-31828411 | MS.gene83175:CDS | 30.0% |
| !! | TTATTTTGCCAGGTGAAAAT+TGG | + | chr4.2:31827946-31827965 | MS.gene83175:intron | 30.0% |
| !! | TTTGTTTTCAGTCTCATGAT+CGG | + | chr4.2:31826305-31826324 | MS.gene83175:intron | 30.0% |
| !!! | TATGGATCTTTTATTTTGCC+AGG | + | chr4.2:31827936-31827955 | MS.gene83175:intron | 30.0% |
| AAAAATCTTCTGCTCTGGTT+GGG | - | chr4.2:31826380-31826399 | None:intergenic | 35.0% | |
| AAATGAAAAGATCGCTGCAA+TGG | + | chr4.2:31828655-31828674 | MS.gene83175:intron | 35.0% | |
| AAATGCATCAATAGGTAACG+AGG | - | chr4.2:31827444-31827463 | None:intergenic | 35.0% | |
| AATTGCAAATTCTGCCAACA+AGG | + | chr4.2:31829082-31829101 | MS.gene83175:CDS | 35.0% | |
| ACAAGGTTACTAGTCAACAT+AGG | - | chr4.2:31826880-31826899 | None:intergenic | 35.0% | |
| ACACATCTTCAATAAGTGTC+AGG | + | chr4.2:31825892-31825911 | MS.gene83175:intron | 35.0% | |
| ACACTTATTGAAGATGTGTC+CGG | - | chr4.2:31825891-31825910 | None:intergenic | 35.0% | |
| ACATCTTCAATAAGTGTCAG+GGG | + | chr4.2:31825894-31825913 | MS.gene83175:intron | 35.0% | |
| ACTTGAACTCTATCGAAGTT+TGG | - | chr4.2:31826619-31826638 | None:intergenic | 35.0% | |
| ACTTTGTATAATGTTGAGGG+TGG | + | chr4.2:31825747-31825766 | MS.gene83175:CDS | 35.0% | |
| AGATGAAGTGACAGTTGTAT+TGG | - | chr4.2:31826570-31826589 | None:intergenic | 35.0% | |
| ATAAATCACGCCATCTATGT+GGG | + | chr4.2:31827253-31827272 | MS.gene83175:intron | 35.0% | |
| ATATGATACATAAGCCCACA+AGG | - | chr4.2:31827286-31827305 | None:intergenic | 35.0% | |
| ATCCAGTGCAATGTTGAATT+GGG | - | chr4.2:31828366-31828385 | None:intergenic | 35.0% | |
| ATGCCTCTTTACATATCAGT+TGG | + | chr4.2:31828190-31828209 | MS.gene83175:intron | 35.0% | |
| ATTGTCTTTAACCGTGTTGT+TGG | + | chr4.2:31825780-31825799 | MS.gene83175:CDS | 35.0% | |
| ATTTCATGCCGTCTATGTTA+TGG | + | chr4.2:31826336-31826355 | MS.gene83175:intron | 35.0% | |
| CACATCTTCAATAAGTGTCA+GGG | + | chr4.2:31825893-31825912 | MS.gene83175:intron | 35.0% | |
| CATAGATGGCGTGATTTATA+TGG | - | chr4.2:31827252-31827271 | None:intergenic | 35.0% | |
| GAACACATATTATGATCCCA+TGG | + | chr4.2:31826950-31826969 | MS.gene83175:CDS | 35.0% | |
| GGATAGACCTGCATATAAAA+AGG | - | chr4.2:31826925-31826944 | None:intergenic | 35.0% | |
| GTCAAATAGGTTCATTCAAG+AGG | - | chr4.2:31828816-31828835 | None:intergenic | 35.0% | |
| GTGATACAATTGAGAATTGG+TGG | - | chr4.2:31827667-31827686 | None:intergenic | 35.0% | |
| GTTCATTCAAGAGGAAAAAG+TGG | - | chr4.2:31828807-31828826 | None:intergenic | 35.0% | |
| TATAAATCACGCCATCTATG+TGG | + | chr4.2:31827252-31827271 | MS.gene83175:intron | 35.0% | |
| TCCTCAAGTCTATAAATGCA+GGG | - | chr4.2:31829031-31829050 | None:intergenic | 35.0% | |
| TCGACTAACAGCCTATAATT+TGG | - | chr4.2:31828312-31828331 | None:intergenic | 35.0% | |
| TGCATTCAAGAAAACCTTGT+TGG | - | chr4.2:31829099-31829118 | None:intergenic | 35.0% | |
| TTCCTCAAGTCTATAAATGC+AGG | - | chr4.2:31829032-31829051 | None:intergenic | 35.0% | |
| ! | AAGTGCTATTATTAGAGCAC+AGG | + | chr4.2:31828511-31828530 | MS.gene83175:CDS | 35.0% |
| ! | ACCAATCAATTGAGCACTTT+TGG | - | chr4.2:31828991-31829010 | None:intergenic | 35.0% |
| ! | ATGATGGGAAATGCATCAAT+AGG | - | chr4.2:31827452-31827471 | None:intergenic | 35.0% |
| ! | CTTCTTTGTTTAGGTTCTCA+TGG | + | chr4.2:31826253-31826272 | MS.gene83175:intron | 35.0% |
| ! | GATTTAAAATTGGAGTCCAG+TGG | + | chr4.2:31829143-31829162 | MS.gene83175:CDS | 35.0% |
| ! | GCTAATTTAAAGTGAGTTGC+AGG | + | chr4.2:31825957-31825976 | MS.gene83175:intron | 35.0% |
| ! | TGGACTCCAATTTTAAATCC+TGG | - | chr4.2:31829142-31829161 | None:intergenic | 35.0% |
| !! | TAATAATTAGGGGGTACTGT+TGG | + | chr4.2:31827517-31827536 | MS.gene83175:intron | 35.0% |
| !!! | AAGGACACTCATTTTGAAAC+GGG | - | chr4.2:31827351-31827370 | None:intergenic | 35.0% |
| !!! | CAGTTTTTTAGGTTCAGTTC+TGG | + | chr4.2:31826745-31826764 | MS.gene83175:intron | 35.0% |
| !!! | CTTGTCTTTTGGTTTGAAGT+TGG | + | chr4.2:31827142-31827161 | MS.gene83175:intron | 35.0% |
| !!! | GACACTCATTTTGAAATGGA+GGG | + | chr4.2:31827612-31827631 | MS.gene83175:intron | 35.0% |
| AAACTGAAAGGGTAAGGTGA+GGG | - | chr4.2:31827177-31827196 | None:intergenic | 40.0% | |
| ACATGAAACGCTCAAATCTG+TGG | + | chr4.2:31828065-31828084 | MS.gene83175:CDS | 40.0% | |
| ACCCTGCATTTATAGACTTG+AGG | + | chr4.2:31829027-31829046 | MS.gene83175:CDS | 40.0% | |
| AGGCTGTTAGTCGAGAAATA+AGG | + | chr4.2:31828318-31828337 | MS.gene83175:intron | 40.0% | |
| CAAAAATCTTCTGCTCTGGT+TGG | - | chr4.2:31826381-31826400 | None:intergenic | 40.0% | |
| CATCCAGTGCAATGTTGAAT+TGG | - | chr4.2:31828367-31828386 | None:intergenic | 40.0% | |
| CATCTTCAATAAGTGTCAGG+GGG | + | chr4.2:31825895-31825914 | MS.gene83175:intron | 40.0% | |
| CATGGATAAGTTGTCAAGGA+AGG | + | chr4.2:31828847-31828866 | MS.gene83175:intron | 40.0% | |
| CCATCTCATATGTAGGAATC+AGG | - | chr4.2:31828548-31828567 | None:intergenic | 40.0% | |
| CCTGATTCCTACATATGAGA+TGG | + | chr4.2:31828545-31828564 | MS.gene83175:intron | 40.0% | |
| GAATGAACCTATTTGACGAC+TGG | + | chr4.2:31828819-31828838 | MS.gene83175:intron | 40.0% | |
| GAGGAAAATTGAAGCTGCTA+GGG | + | chr4.2:31829046-31829065 | MS.gene83175:CDS | 40.0% | |
| GATGATTGGGTCATGTATGA+AGG | + | chr4.2:31826186-31826205 | MS.gene83175:intron | 40.0% | |
| GATGCATGGATAAGTTGTCA+AGG | + | chr4.2:31828843-31828862 | MS.gene83175:intron | 40.0% | |
| GGTTCAAAAATCTTCTGCTC+TGG | - | chr4.2:31826385-31826404 | None:intergenic | 40.0% | |
| GTCTATAAATGCAGGGTTGT+TGG | - | chr4.2:31829024-31829043 | None:intergenic | 40.0% | |
| TAAACTGAAAGGGTAAGGTG+AGG | - | chr4.2:31827178-31827197 | None:intergenic | 40.0% | |
| TATATGCAGGTCTATCCTGA+AGG | + | chr4.2:31826928-31826947 | MS.gene83175:intron | 40.0% | |
| TATCCTTGACACCAACAACA+CGG | - | chr4.2:31825794-31825813 | None:intergenic | 40.0% | |
| TGAGGAAAATTGAAGCTGCT+AGG | + | chr4.2:31829045-31829064 | MS.gene83175:CDS | 40.0% | |
| TGGACTAAACTGAAAGGGTA+AGG | - | chr4.2:31827183-31827202 | None:intergenic | 40.0% | |
| TTATGATCCCATGGTTTGAG+AGG | + | chr4.2:31826959-31826978 | MS.gene83175:CDS | 40.0% | |
| TTCAAGAGGAAAAAGTGGAG+AGG | - | chr4.2:31828802-31828821 | None:intergenic | 40.0% | |
| TTCAATAGGGGTCATGTTGA+AGG | - | chr4.2:31828884-31828903 | None:intergenic | 40.0% | |
| ! | CAAGGTTTTCTTGAATGCAG+AGG | + | chr4.2:31829100-31829119 | MS.gene83175:CDS | 40.0% |
| ! | CTCTAAGTCCAATTTTCACC+TGG | - | chr4.2:31827957-31827976 | None:intergenic | 40.0% |
| !! | CACAAGTTTGACTTTTGGGA+GGG | + | chr4.2:31828397-31828416 | MS.gene83175:CDS | 40.0% |
| !! | GCCAAAAGTGCTCAATTGAT+TGG | + | chr4.2:31828987-31829006 | MS.gene83175:CDS | 40.0% |
| !! | TCACAAGTTTGACTTTTGGG+AGG | + | chr4.2:31828396-31828415 | MS.gene83175:CDS | 40.0% |
| !! | TGTTGTTGGTGTCAAGGATA+AGG | + | chr4.2:31825794-31825813 | MS.gene83175:CDS | 40.0% |
| !! | TTCGATAGACCGTTGGTAAT+TGG | - | chr4.2:31828002-31828021 | None:intergenic | 40.0% |
| !!! | AGGACACTCATTTTGAAACG+GGG | - | chr4.2:31827350-31827369 | None:intergenic | 40.0% |
| !!! | CGACACTCATTTTGAAATGG+AGG | + | chr4.2:31827611-31827630 | MS.gene83175:intron | 40.0% |
| ACTCCAAAGACCTGCATACT+TGG | + | chr4.2:31826542-31826561 | MS.gene83175:intron | 45.0% | |
| AGAGGAAAAAGTGGAGAGGA+AGG | - | chr4.2:31828798-31828817 | None:intergenic | 45.0% | |
| ATCGCTGCAATGGTATTTGC+TGG | + | chr4.2:31828665-31828684 | MS.gene83175:intron | 45.0% | |
| CAACAACGTCAAGATCCCAA+AGG | + | chr4.2:31825647-31825666 | MS.gene83175:CDS | 45.0% | |
| CAGTGCAATGTTGAATTGGG+AGG | - | chr4.2:31828363-31828382 | None:intergenic | 45.0% | |
| CTCCAAAGACCTGCATACTT+GGG | + | chr4.2:31826543-31826562 | MS.gene83175:intron | 45.0% | |
| CTCCCAATTCAACATTGCAC+TGG | + | chr4.2:31828361-31828380 | MS.gene83175:CDS | 45.0% | |
| GAGGAAAAAGTGGAGAGGAA+GGG | - | chr4.2:31828797-31828816 | None:intergenic | 45.0% | |
| GCACGAACATCATAGATCAC+AGG | - | chr4.2:31826985-31827004 | None:intergenic | 45.0% | |
| TCAGCTCATTACTCAGAGAG+AGG | + | chr4.2:31828107-31828126 | MS.gene83175:CDS | 45.0% | |
| TCTCTGAGTAATGAGCTGAC+TGG | - | chr4.2:31828106-31828125 | None:intergenic | 45.0% | |
| TGCATCACCAGTCGTCAAAT+AGG | - | chr4.2:31828829-31828848 | None:intergenic | 45.0% | |
| TGTATTGGACCCAAGTATGC+AGG | - | chr4.2:31826555-31826574 | None:intergenic | 45.0% | |
| ! | ACGGGGGGAGTATATGAAAT+AGG | - | chr4.2:31827333-31827352 | None:intergenic | 45.0% |
| ! | ATTTGACGACTGGTGATGCA+TGG | + | chr4.2:31828829-31828848 | MS.gene83175:intron | 45.0% |
| ! | GAAGTGCTCTCCACTAAATG+AGG | - | chr4.2:31827012-31827031 | None:intergenic | 45.0% |
| ! | GAGAATTGGTGGTTCAGTTC+AGG | - | chr4.2:31827656-31827675 | None:intergenic | 45.0% |
| !! | CATTTAGTGGAGAGCACTTC+AGG | + | chr4.2:31827012-31827031 | MS.gene83175:CDS | 45.0% |
| !! | TAACCGTGTTGTTGGTGTCA+AGG | + | chr4.2:31825788-31825807 | MS.gene83175:CDS | 45.0% |
| !! | TAGACCGTTGGTAATTGGTC+TGG | - | chr4.2:31827997-31828016 | None:intergenic | 45.0% |
| !!! | GACACTCATTTTGAAACGGG+GGG | - | chr4.2:31827348-31827367 | None:intergenic | 45.0% |
| !!! | GGACACTCATTTTGAAACGG+GGG | - | chr4.2:31827349-31827368 | None:intergenic | 45.0% |
| !!! | TATATTTTTTTAAAAAACAA+CGG | - | chr4.2:31828596-31828615 | None:intergenic | 5.0% |
| ACCAACGGTCTATCGAACTC+TGG | + | chr4.2:31828005-31828024 | MS.gene83175:CDS | 50.0% | |
| AGCAGAAATTCCACCACCAC+CGG | - | chr4.2:31825676-31825695 | None:intergenic | 50.0% | |
| AGCTGCAATTGAAGCCAAGC+AGG | + | chr4.2:31828427-31828446 | MS.gene83175:CDS | 50.0% | |
| AGCTGCTAGGGAAATCGCTA+AGG | + | chr4.2:31829058-31829077 | MS.gene83175:CDS | 50.0% | |
| AGGAAGCCGTGATCTCCAAA+TGG | + | chr4.2:31827032-31827051 | MS.gene83175:CDS | 50.0% | |
| AGGTCAACAGCCCACATAGA+TGG | - | chr4.2:31827266-31827285 | None:intergenic | 50.0% | |
| ATCACAGGCCTCTCAAACCA+TGG | - | chr4.2:31826970-31826989 | None:intergenic | 50.0% | |
| CCAACGGTCTATCGAACTCT+GGG | + | chr4.2:31828006-31828025 | MS.gene83175:CDS | 50.0% | |
| CGTGCCAGACCAATTACCAA+CGG | + | chr4.2:31827990-31828009 | MS.gene83175:CDS | 50.0% | |
| GACCCAAGTATGCAGGTCTT+TGG | - | chr4.2:31826548-31826567 | None:intergenic | 50.0% | |
| GGATCTCTTGCTGAATCTCC+AGG | + | chr4.2:31829121-31829140 | MS.gene83175:CDS | 50.0% | |
| GTCAAGATCCCAAAGGTTCC+CGG | + | chr4.2:31825654-31825673 | MS.gene83175:CDS | 50.0% | |
| TCACAGGCCTCTCAAACCAT+GGG | - | chr4.2:31826969-31826988 | None:intergenic | 50.0% | |
| TCGTGCACGACCTCATTTAG+TGG | + | chr4.2:31826999-31827018 | MS.gene83175:CDS | 50.0% | |
| TGAAAGGGTAAGGTGAGGGA+AGG | - | chr4.2:31827173-31827192 | None:intergenic | 50.0% | |
| TTCTTGAGCAGCAACCTGCT+TGG | - | chr4.2:31828444-31828463 | None:intergenic | 50.0% | |
| TTGAAGATGTGTCCGGTGTC+TGG | - | chr4.2:31825884-31825903 | None:intergenic | 50.0% | |
| ! | ATGTGGGCTGTTGACCTTGT+GGG | + | chr4.2:31827269-31827288 | MS.gene83175:intron | 50.0% |
| ! | TATGTGGGCTGTTGACCTTG+TGG | + | chr4.2:31827268-31827287 | MS.gene83175:intron | 50.0% |
| !! | CGTTGGTAATTGGTCTGGCA+CGG | - | chr4.2:31827992-31828011 | None:intergenic | 50.0% |
| !! | CTTGGTGGACTTGCTGTCTA+TGG | + | chr4.2:31825714-31825733 | MS.gene83175:CDS | 50.0% |
| !! | GTTGGTAATTGGTCTGGCAC+GGG | - | chr4.2:31827991-31828010 | None:intergenic | 50.0% |
| AAAGTGGAGAGGAAGGGAGC+AGG | - | chr4.2:31828791-31828810 | None:intergenic | 55.0% | |
| AAGATCCCAAAGGTTCCCGG+TGG | + | chr4.2:31825657-31825676 | MS.gene83175:CDS | 55.0% | |
| AAGTGGAGAGGAAGGGAGCA+GGG | - | chr4.2:31828790-31828809 | None:intergenic | 55.0% | |
| CCCAGAGTTCGATAGACCGT+TGG | - | chr4.2:31828009-31828028 | None:intergenic | 55.0% | |
| GCAGAAATTCCACCACCACC+GGG | - | chr4.2:31825675-31825694 | None:intergenic | 55.0% | |
| ATCCCAAAGGTTCCCGGTGG+TGG | + | chr4.2:31825660-31825679 | MS.gene83175:CDS | 60.0% | |
| CACCACCACCGGGAACCTTT+GGG | - | chr4.2:31825665-31825684 | None:intergenic | 60.0% | |
| CACGCATCAGTGCCAGACAC+CGG | + | chr4.2:31825869-31825888 | MS.gene83175:intron | 60.0% | |
| CCACCACCACCGGGAACCTT+TGG | - | chr4.2:31825666-31825685 | None:intergenic | 65.0% | |
| ! | CCAAAGGTTCCCGGTGGTGG+TGG | + | chr4.2:31825663-31825682 | MS.gene83175:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 31825639 | 31829175 | 31825639 | ID=MS.gene83175 |
| chr4.2 | mRNA | 31825639 | 31829175 | 31825639 | ID=MS.gene83175.t1;Parent=MS.gene83175 |
| chr4.2 | exon | 31825639 | 31825815 | 31825639 | ID=MS.gene83175.t1.exon1;Parent=MS.gene83175.t1 |
| chr4.2 | CDS | 31825639 | 31825815 | 31825639 | ID=cds.MS.gene83175.t1;Parent=MS.gene83175.t1 |
| chr4.2 | exon | 31826937 | 31827053 | 31826937 | ID=MS.gene83175.t1.exon2;Parent=MS.gene83175.t1 |
| chr4.2 | CDS | 31826937 | 31827053 | 31826937 | ID=cds.MS.gene83175.t1;Parent=MS.gene83175.t1 |
| chr4.2 | exon | 31827958 | 31828128 | 31827958 | ID=MS.gene83175.t1.exon3;Parent=MS.gene83175.t1 |
| chr4.2 | CDS | 31827958 | 31828128 | 31827958 | ID=cds.MS.gene83175.t1;Parent=MS.gene83175.t1 |
| chr4.2 | exon | 31828320 | 31828532 | 31828320 | ID=MS.gene83175.t1.exon4;Parent=MS.gene83175.t1 |
| chr4.2 | CDS | 31828320 | 31828532 | 31828320 | ID=cds.MS.gene83175.t1;Parent=MS.gene83175.t1 |
| chr4.2 | exon | 31828981 | 31829175 | 31828981 | ID=MS.gene83175.t1.exon5;Parent=MS.gene83175.t1 |
| chr4.2 | CDS | 31828981 | 31829175 | 31828981 | ID=cds.MS.gene83175.t1;Parent=MS.gene83175.t1 |
| Gene Sequence |
| Protein sequence |
