AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83556

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83556.t1 MTR_2g104180 98.357 487 8 0 1 487 1 487 0.0 966
MS.gene83556.t1 MTR_7g017630 45.433 416 218 4 73 483 47 458 6.25e-118 354
MS.gene83556.t1 MTR_6g016245 44.762 420 224 4 73 487 38 454 1.41e-112 340
MS.gene83556.t1 MTR_6g016295 43.961 414 224 4 79 487 46 456 8.75e-107 325
MS.gene83556.t1 MTR_6g016275 44.313 422 224 6 73 487 43 460 1.11e-106 325
MS.gene83556.t1 MTR_5g083770 40.749 427 245 5 62 483 5 428 6.88e-106 322
MS.gene83556.t1 MTR_3g072110 39.070 430 253 5 64 487 12 438 6.84e-103 315
MS.gene83556.t1 MTR_6g016270 43.095 420 231 4 73 487 45 461 1.02e-102 315
MS.gene83556.t1 MTR_5g083760 38.679 424 247 7 69 485 28 445 1.95e-95 296
MS.gene83556.t1 MTR_1396s0010 41.509 265 131 3 222 486 1 241 2.21e-59 196
MS.gene83556.t1 MTR_1396s0010 45.320 203 109 1 202 404 1 201 1.29e-51 174
MS.gene83556.t1 MTR_6g016245 45.000 200 106 3 289 487 190 386 1.08e-42 156
MS.gene83556.t1 MTR_6g016245 46.053 152 78 1 73 220 38 189 5.80e-36 137
MS.gene83556.t1 MTR_8g065630 40.212 189 109 1 47 231 23 211 5.91e-38 138
MS.gene83556.t1 MTR_6g024240 35.424 271 116 5 219 487 39 252 1.06e-36 136
MS.gene83556.t1 MTR_8g065650 49.020 153 74 1 79 227 55 207 2.02e-36 142
MS.gene83556.t1 MTR_0658s0030 43.636 110 61 1 367 476 1 109 4.80e-21 89.0
MS.gene83556.t1 MTR_3g072105 40.217 92 54 1 71 162 19 109 6.37e-17 77.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83556.t1 AT1G80510 71.779 489 129 3 6 487 2 488 0.0 677
MS.gene83556.t1 AT3G30390 45.107 419 223 3 73 487 41 456 5.34e-123 367
MS.gene83556.t1 AT3G30390 45.107 419 223 3 73 487 41 456 5.34e-123 367
MS.gene83556.t1 AT3G30390 45.107 419 223 3 73 487 41 456 5.34e-123 367
MS.gene83556.t1 AT5G38820 45.238 420 221 4 73 486 33 449 5.06e-121 362
MS.gene83556.t1 AT5G38820 45.238 420 221 4 73 486 33 449 5.06e-121 362
MS.gene83556.t1 AT5G38820 45.238 420 221 4 73 486 38 454 5.68e-121 362
MS.gene83556.t1 AT3G56200 39.618 419 246 3 72 486 20 435 4.30e-100 308
MS.gene83556.t1 AT2G40420 38.186 419 250 5 72 485 22 436 5.93e-89 279

Find 104 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCGGTTCGGTTCATCATTT+AGG 0.170468 2.2:+714483 MS.gene83556:CDS
AATTGTTTATTTGATTATAA+TGG 0.179616 2.2:+714449 MS.gene83556:CDS
ATTTGACTACTACTATTATT+GGG 0.217290 2.2:+714199 MS.gene83556:CDS
AATTTGACTACTACTATTAT+TGG 0.222548 2.2:+714198 MS.gene83556:CDS
AGTTGATGGGGAATGGGGTT+TGG 0.254515 2.2:+714517 MS.gene83556:CDS
TATTATTGGGGCAGGAATTA+TGG 0.256792 2.2:+714212 MS.gene83556:CDS
CCGGTTCGGTTCATCATTTA+GGG 0.262632 2.2:+714484 MS.gene83556:CDS
ATTGTTTATTTGATTATAAT+GGG 0.268720 2.2:+714450 MS.gene83556:CDS
CCTGCTACCATGAAAGTTCT+TGG 0.277184 2.2:+714240 MS.gene83556:CDS
CTCTTCCTACTTTCTGATAA+AGG 0.295674 2.2:-715122 None:intergenic
GCTTGTGATTCTTGTTGTTA+TGG 0.306594 2.2:+714551 MS.gene83556:CDS
GTTGATGGGGAATGGGGTTT+GGG 0.307539 2.2:+714518 MS.gene83556:CDS
GATAATTATCCTCTTGTTGT+TGG 0.311646 2.2:+714132 MS.gene83556:CDS
CTGTCCGGTTACCTATTATT+CGG 0.316049 2.2:+714921 MS.gene83556:CDS
TTGATCAGTTGATGGGGAAT+GGG 0.317412 2.2:+714511 MS.gene83556:CDS
TTAAAAGCTGTCCAGATGTT+TGG 0.318283 2.2:-715203 None:intergenic
CGTAGTGAGAAATGAATAAC+AGG 0.324473 2.2:-715062 None:intergenic
TGTCCGGTTACCTATTATTC+GGG 0.327444 2.2:+714922 MS.gene83556:CDS
CAGTATCATCCCCGAATAAT+AGG 0.328662 2.2:-714932 None:intergenic
ACATATGCATTTGTCATGAT+TGG 0.339398 2.2:-714780 None:intergenic
TTTGATCAGTTGATGGGGAA+TGG 0.352760 2.2:+714510 MS.gene83556:CDS
GCTGTGACTGTTAGCATTGT+AGG 0.358697 2.2:+715353 MS.gene83556:CDS
TGCAATAAGATTAAGTCATC+AGG 0.366366 2.2:+715280 MS.gene83556:CDS
CTGTTGGTTCTCATATATAT+CGG 0.366555 2.2:+715167 MS.gene83556:CDS
GTCATGGTTAATGTTGGTAT+TGG 0.367428 2.2:+715331 MS.gene83556:CDS
GGTACACCAGACCCGTGATT+TGG 0.370920 2.2:-714162 None:intergenic
AACAACACCAAGAACTTTCA+TGG 0.378312 2.2:-714247 None:intergenic
ATGTGTAAAGCGTCATCTTA+TGG 0.399986 2.2:+714345 MS.gene83556:CDS
CCGATATACAACGAGCTTGA+AGG 0.427017 2.2:+714822 MS.gene83556:CDS
TCTTGGAATCCGGTTTAGTT+CGG 0.429060 2.2:+714986 MS.gene83556:CDS
GTGGATACTTTGGTATTTGA+GGG 0.430206 2.2:+715092 MS.gene83556:CDS
TGTCCAGATGTTTGGAATCA+TGG 0.438941 2.2:-715195 None:intergenic
AGTGGATACTTTGGTATTTG+AGG 0.440264 2.2:+715091 MS.gene83556:CDS
TGATCAGTTGATGGGGAATG+GGG 0.440283 2.2:+714512 MS.gene83556:CDS
CCTTCAAGCTCGTTGTATAT+CGG 0.440630 2.2:-714822 None:intergenic
AAATATGATGAAGAACTAAC+AGG 0.441010 2.2:-713988 None:intergenic
GGAATGGGGTTTGGGATCAG+AGG 0.442360 2.2:+714526 MS.gene83556:CDS
AGTTCAAGGCCGAACTAAAC+CGG 0.446759 2.2:-714995 None:intergenic
GTACCATGATTCCAAACATC+TGG 0.451690 2.2:+715192 MS.gene83556:CDS
CCAGACCCGTGATTTGGAAT+AGG 0.454182 2.2:-714156 None:intergenic
GCAACAACGGCTGTTTCGTT+AGG 0.456316 2.2:+715236 MS.gene83556:CDS
CTAAAATCAGGAACCATCCT+AGG 0.459986 2.2:-714720 None:intergenic
CAGGGAAAACAAGTATCAAA+TGG 0.460714 2.2:-715043 None:intergenic
GTTAGCATTGTAGGAGTTGT+CGG 0.463076 2.2:+715362 MS.gene83556:CDS
TTGATAAGGATCTTGGAATC+CGG 0.468353 2.2:+714976 MS.gene83556:CDS
ATGCTATGGGTAGGCCTGCT+AGG 0.468880 2.2:+714382 MS.gene83556:CDS
CCCTAAATGATGAACCGAAC+CGG 0.471664 2.2:-714484 None:intergenic
GGAAATTAGTGTCGAATTGT+TGG 0.479421 2.2:+714308 MS.gene83556:CDS
ATACCAAAGTATCCACTGTT+TGG 0.479637 2.2:-715085 None:intergenic
GAGCTTGACTTCAGCTGCAT+CGG 0.488598 2.2:+714620 MS.gene83556:CDS
TATGCTGCAACGGCACTGTC+CGG 0.495004 2.2:+714906 MS.gene83556:CDS
ATCCCCGAATAATAGGTAAC+CGG 0.498976 2.2:-714925 None:intergenic
GAAAGTAGGAAGAGATCGCT+AGG 0.504058 2.2:+715131 MS.gene83556:CDS
TGTTTATTTGATTATAATGG+GGG 0.506452 2.2:+714452 MS.gene83556:CDS
GTTGGTCCTATTCCAAATCA+CGG 0.506802 2.2:+714150 MS.gene83556:CDS
CCTATTCCAAATCACGGGTC+TGG 0.511638 2.2:+714156 MS.gene83556:CDS
GACTCGAACGATATAGTTCA+AGG 0.512418 2.2:-715009 None:intergenic
GAGATTTGAGCCGCGTAGAA+CGG 0.523045 2.2:+715303 MS.gene83556:CDS
CCAAGAACTTTCATGGTAGC+AGG 0.523622 2.2:-714240 None:intergenic
AGGGCTGACTGCAATTCTGT+TGG 0.526397 2.2:+715151 MS.gene83556:CDS
CTTGACTTCAGCTGCATCGG+TGG 0.528392 2.2:+714623 MS.gene83556:CDS
ACGCCAAACAGTGGATACTT+TGG 0.531176 2.2:+715082 MS.gene83556:CDS
ATCTCAGATAAAATCCTAGC+AGG 0.533652 2.2:-714396 None:intergenic
AATCACGGGTCTGGTGTACC+TGG 0.537363 2.2:+714165 MS.gene83556:CDS
TTGTTTATTTGATTATAATG+GGG 0.537532 2.2:+714451 MS.gene83556:CDS
ATCTAAGGTTGATGATGATG+AGG 0.540722 2.2:+714086 MS.gene83556:CDS
AATCTTATTGCAACAAGAGG+TGG 0.543383 2.2:-715269 None:intergenic
ACTACTACTATTATTGGGGC+AGG 0.544363 2.2:+714204 MS.gene83556:CDS
TGAGGTTGTTCAACATGCTA+TGG 0.553920 2.2:+714368 MS.gene83556:CDS
AGATGACGCTTTACACATAA+CGG 0.555189 2.2:-714340 None:intergenic
TTGGTCCTATTCCAAATCAC+GGG 0.557232 2.2:+714151 MS.gene83556:CDS
TGTGATTCTTGTTGTTATGG+TGG 0.559947 2.2:+714554 MS.gene83556:CDS
TTGTAGTGACCCTTCCTACT+CGG 0.560230 2.2:-714866 None:intergenic
AAGGAAAGATTGATGCTCCT+AGG 0.564135 2.2:+714703 MS.gene83556:CDS
CACCTCCTTTATCAGAAAGT+AGG 0.564200 2.2:+715117 MS.gene83556:CDS
CATCATGGTTTATGCTGCAA+CGG 0.568976 2.2:+714896 MS.gene83556:CDS
AGAAGATGAACCGAGTAGGA+AGG 0.574177 2.2:+714856 MS.gene83556:CDS
CAAATAAACAATTAAAACAC+CGG 0.582905 2.2:-714439 None:intergenic
TTTGACTACTACTATTATTG+GGG 0.583048 2.2:+714200 MS.gene83556:CDS
CTTAATCTTATTGCAACAAG+AGG 0.584381 2.2:-715272 None:intergenic
AAAGATTGATGCTCCTAGGA+TGG 0.587388 2.2:+714707 MS.gene83556:CDS
GAGGTTGTTCAACATGCTAT+GGG 0.595730 2.2:+714369 MS.gene83556:CDS
GAAGATGAACCGAGTAGGAA+GGG 0.598449 2.2:+714857 MS.gene83556:CDS
GCAATAAGATTAAGTCATCA+GGG 0.602082 2.2:+715281 MS.gene83556:CDS
GGAATAGGACCAACAACAAG+AGG 0.604623 2.2:-714141 None:intergenic
TGTCGGCAATGTCTATAGCA+TGG 0.606367 2.2:+715379 MS.gene83556:CDS
TTGTTCAACATGCTATGGGT+AGG 0.614131 2.2:+714373 MS.gene83556:CDS
TAAGGTTGATGATGATGAGG+AGG 0.622414 2.2:+714089 MS.gene83556:CDS
GTCAAATTAAACACAGCACC+AGG 0.622692 2.2:-714183 None:intergenic
TTTCTCACTACGCCAAACAG+TGG 0.625897 2.2:+715073 MS.gene83556:CDS
CCTACTCGGTTCATCTTCTG+CGG 0.628118 2.2:-714852 None:intergenic
TAAGTTCACAGGTGCAACAA+CGG 0.628689 2.2:+715223 MS.gene83556:CDS
TTCCTACTTTCTGATAAAGG+AGG 0.633147 2.2:-715119 None:intergenic
TTAGTGTCGAATTGTTGGTG+AGG 0.634170 2.2:+714313 MS.gene83556:CDS
AAAGTAGGAAGAGATCGCTA+GGG 0.636934 2.2:+715132 MS.gene83556:CDS
GTCCGGTTACCTATTATTCG+GGG 0.637678 2.2:+714923 MS.gene83556:CDS
CGGTTCGGTTCATCATTTAG+GGG 0.639831 2.2:+714485 MS.gene83556:CDS
CCGCAGAAGATGAACCGAGT+AGG 0.645116 2.2:+714852 MS.gene83556:CDS
ATCTTATCAAGCGAACAAAG+TGG 0.658267 2.2:-714588 None:intergenic
TATACAACGAGCTTGAAGGT+AGG 0.669040 2.2:+714826 MS.gene83556:CDS
TTGAACTATATCGTTCGAGT+CGG 0.681194 2.2:+715011 MS.gene83556:CDS
TAAAGCGTCATCTTATGGTG+AGG 0.735180 2.2:+714350 MS.gene83556:CDS
ATGACAAAATCCGTTCTACG+CGG 0.759656 2.2:-715313 None:intergenic
GTAGTGAGAAATGAATAACA+GGG 0.781956 2.2:-715061 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGTTTATTTGATTATAA+TGG + chr2.2:714449-714468 MS.gene83556:CDS 10.0%
!! ATTGTTTATTTGATTATAAT+GGG + chr2.2:714450-714469 MS.gene83556:CDS 10.0%
!! TTGTTTATTTGATTATAATG+GGG + chr2.2:714451-714470 MS.gene83556:CDS 15.0%
!! AATTTGACTACTACTATTAT+TGG + chr2.2:714198-714217 MS.gene83556:CDS 20.0%
!! ATTTGACTACTACTATTATT+GGG + chr2.2:714199-714218 MS.gene83556:CDS 20.0%
!! CAAATAAACAATTAAAACAC+CGG - chr2.2:714442-714461 None:intergenic 20.0%
!! TGTTTATTTGATTATAATGG+GGG + chr2.2:714452-714471 MS.gene83556:CDS 20.0%
!!! ATTGTCTTGATTATTTTGAT+GGG + chr2.2:714276-714295 MS.gene83556:CDS 20.0%
!!! TGTTTTGACTAATTTTGATA+AGG + chr2.2:714962-714981 MS.gene83556:CDS 20.0%
! AAATATGATGAAGAACTAAC+AGG - chr2.2:713991-714010 None:intergenic 25.0%
! TTTGACTACTACTATTATTG+GGG + chr2.2:714200-714219 MS.gene83556:CDS 25.0%
!! CAAAGATTATCTTTTGATGA+GGG + chr2.2:714048-714067 MS.gene83556:CDS 25.0%
!! TCAAAGATTATCTTTTGATG+AGG + chr2.2:714047-714066 MS.gene83556:CDS 25.0%
!!! ACTAATTTTGATAAGGATCT+TGG + chr2.2:714969-714988 MS.gene83556:CDS 25.0%
!!! GATTGTCTTGATTATTTTGA+TGG + chr2.2:714275-714294 MS.gene83556:CDS 25.0%
!!! TGTATTATTTTGAACAATGC+CGG + chr2.2:714420-714439 MS.gene83556:CDS 25.0%
!!! TTGTCTTGATTATTTTGATG+GGG + chr2.2:714277-714296 MS.gene83556:CDS 25.0%
ACATATGCATTTGTCATGAT+TGG - chr2.2:714783-714802 None:intergenic 30.0%
CTTAATCTTATTGCAACAAG+AGG - chr2.2:715275-715294 None:intergenic 30.0%
GCAATAAGATTAAGTCATCA+GGG + chr2.2:715281-715300 MS.gene83556:CDS 30.0%
GTAGTGAGAAATGAATAACA+GGG - chr2.2:715064-715083 None:intergenic 30.0%
TGCAATAAGATTAAGTCATC+AGG + chr2.2:715280-715299 MS.gene83556:CDS 30.0%
! GATAATTATCCTCTTGTTGT+TGG + chr2.2:714132-714151 MS.gene83556:CDS 30.0%
! GATTTTGTCATGGTTAATGT+TGG + chr2.2:715325-715344 MS.gene83556:CDS 30.0%
!! CTGTTGGTTCTCATATATAT+CGG + chr2.2:715167-715186 MS.gene83556:CDS 30.0%
!! GATTTTGATGAATCATTCTG+TGG - chr2.2:714024-714043 None:intergenic 30.0%
!!! AAAGTTCTTGGTGTTGTTTT+AGG + chr2.2:714252-714271 MS.gene83556:CDS 30.0%
!!! AAGTTCTTGGTGTTGTTTTA+GGG + chr2.2:714253-714272 MS.gene83556:CDS 30.0%
!!! GCTTTTATTAAGCTTGTTGA+AGG + chr2.2:714684-714703 MS.gene83556:CDS 30.0%
!!! TATTTTGATGGGGATTTTGT+CGG + chr2.2:714287-714306 MS.gene83556:CDS 30.0%
AACAACACCAAGAACTTTCA+TGG - chr2.2:714250-714269 None:intergenic 35.0%
AATCTTATTGCAACAAGAGG+TGG - chr2.2:715272-715291 None:intergenic 35.0%
AGATGACGCTTTACACATAA+CGG - chr2.2:714343-714362 None:intergenic 35.0%
AGTGGATACTTTGGTATTTG+AGG + chr2.2:715091-715110 MS.gene83556:CDS 35.0%
ATCTCAGATAAAATCCTAGC+AGG - chr2.2:714399-714418 None:intergenic 35.0%
ATCTTATCAAGCGAACAAAG+TGG - chr2.2:714591-714610 None:intergenic 35.0%
CAGGGAAAACAAGTATCAAA+TGG - chr2.2:715046-715065 None:intergenic 35.0%
CGTAGTGAGAAATGAATAAC+AGG - chr2.2:715065-715084 None:intergenic 35.0%
CTCTTCCTACTTTCTGATAA+AGG - chr2.2:715125-715144 None:intergenic 35.0%
GTCATGGTTAATGTTGGTAT+TGG + chr2.2:715331-715350 MS.gene83556:CDS 35.0%
GTGGATACTTTGGTATTTGA+GGG + chr2.2:715092-715111 MS.gene83556:CDS 35.0%
TATTATTGGGGCAGGAATTA+TGG + chr2.2:714212-714231 MS.gene83556:CDS 35.0%
TTAAAAGCTGTCCAGATGTT+TGG - chr2.2:715206-715225 None:intergenic 35.0%
TTCCTACTTTCTGATAAAGG+AGG - chr2.2:715122-715141 None:intergenic 35.0%
TTGAACTATATCGTTCGAGT+CGG + chr2.2:715011-715030 MS.gene83556:CDS 35.0%
TTGATAAGGATCTTGGAATC+CGG + chr2.2:714976-714995 MS.gene83556:CDS 35.0%
! AGATTATCTTTTGATGAGGG+TGG + chr2.2:714051-714070 MS.gene83556:CDS 35.0%
! ATACCAAAGTATCCACTGTT+TGG - chr2.2:715088-715107 None:intergenic 35.0%
! ATGTGTAAAGCGTCATCTTA+TGG + chr2.2:714345-714364 MS.gene83556:CDS 35.0%
! CACTACAATTTTGTGCATCA+TGG + chr2.2:714881-714900 MS.gene83556:CDS 35.0%
! GGAAATTAGTGTCGAATTGT+TGG + chr2.2:714308-714327 MS.gene83556:CDS 35.0%
!! ATCTAAGGTTGATGATGATG+AGG + chr2.2:714086-714105 MS.gene83556:CDS 35.0%
!! GCTTGTGATTCTTGTTGTTA+TGG + chr2.2:714551-714570 MS.gene83556:CDS 35.0%
!! TGTGATTCTTGTTGTTATGG+TGG + chr2.2:714554-714573 MS.gene83556:CDS 35.0%
!!! TCCTGATTTTAGCTCGAAAA+AGG + chr2.2:714731-714750 MS.gene83556:CDS 35.0%
AAAGATTGATGCTCCTAGGA+TGG + chr2.2:714707-714726 MS.gene83556:CDS 40.0%
AAAGTAGGAAGAGATCGCTA+GGG + chr2.2:715132-715151 MS.gene83556:CDS 40.0%
AAGGAAAGATTGATGCTCCT+AGG + chr2.2:714703-714722 MS.gene83556:CDS 40.0%
ACTACTACTATTATTGGGGC+AGG + chr2.2:714204-714223 MS.gene83556:CDS 40.0%
ATCCCCGAATAATAGGTAAC+CGG - chr2.2:714928-714947 None:intergenic 40.0%
ATGACAAAATCCGTTCTACG+CGG - chr2.2:715316-715335 None:intergenic 40.0%
CACCTCCTTTATCAGAAAGT+AGG + chr2.2:715117-715136 MS.gene83556:CDS 40.0%
CAGTATCATCCCCGAATAAT+AGG - chr2.2:714935-714954 None:intergenic 40.0%
CATCATGGTTTATGCTGCAA+CGG + chr2.2:714896-714915 MS.gene83556:CDS 40.0%
CCTTCAAGCTCGTTGTATAT+CGG - chr2.2:714825-714844 None:intergenic 40.0%
CTAAAATCAGGAACCATCCT+AGG - chr2.2:714723-714742 None:intergenic 40.0%
CTGTCCGGTTACCTATTATT+CGG + chr2.2:714921-714940 MS.gene83556:CDS 40.0%
GACTCGAACGATATAGTTCA+AGG - chr2.2:715012-715031 None:intergenic 40.0%
GAGGTTGTTCAACATGCTAT+GGG + chr2.2:714369-714388 MS.gene83556:CDS 40.0%
GTACCATGATTCCAAACATC+TGG + chr2.2:715192-715211 MS.gene83556:CDS 40.0%
GTCAAATTAAACACAGCACC+AGG - chr2.2:714186-714205 None:intergenic 40.0%
GTTAGCATTGTAGGAGTTGT+CGG + chr2.2:715362-715381 MS.gene83556:CDS 40.0%
GTTGGTCCTATTCCAAATCA+CGG + chr2.2:714150-714169 MS.gene83556:CDS 40.0%
TAAGTTCACAGGTGCAACAA+CGG + chr2.2:715223-715242 MS.gene83556:CDS 40.0%
TAGCTCGAAAAAGGCTATCT+TGG + chr2.2:714740-714759 MS.gene83556:CDS 40.0%
TATACAACGAGCTTGAAGGT+AGG + chr2.2:714826-714845 MS.gene83556:CDS 40.0%
TCTTGGAATCCGGTTTAGTT+CGG + chr2.2:714986-715005 MS.gene83556:CDS 40.0%
TGAGGTTGTTCAACATGCTA+TGG + chr2.2:714368-714387 MS.gene83556:CDS 40.0%
TGTCCGGTTACCTATTATTC+GGG + chr2.2:714922-714941 MS.gene83556:CDS 40.0%
TTGGTCCTATTCCAAATCAC+GGG + chr2.2:714151-714170 MS.gene83556:CDS 40.0%
TTGTTCAACATGCTATGGGT+AGG + chr2.2:714373-714392 MS.gene83556:CDS 40.0%
! AGGGGTTTTTGATCAGTTGA+TGG + chr2.2:714503-714522 MS.gene83556:CDS 40.0%
! ATAATGGGGGATGTTATGTC+CGG + chr2.2:714465-714484 MS.gene83556:CDS 40.0%
! GGGGTTTTTGATCAGTTGAT+GGG + chr2.2:714504-714523 MS.gene83556:CDS 40.0%
! TAAAGCGTCATCTTATGGTG+AGG + chr2.2:714350-714369 MS.gene83556:CDS 40.0%
! TATCTTTTGATGAGGGTGGT+GGG + chr2.2:714055-714074 MS.gene83556:CDS 40.0%
! TGTCCAGATGTTTGGAATCA+TGG - chr2.2:715198-715217 None:intergenic 40.0%
! TTAGTGTCGAATTGTTGGTG+AGG + chr2.2:714313-714332 MS.gene83556:CDS 40.0%
! TTATCTTTTGATGAGGGTGG+TGG + chr2.2:714054-714073 MS.gene83556:CDS 40.0%
!! GGGTTTTTGATCAGTTGATG+GGG + chr2.2:714505-714524 MS.gene83556:CDS 40.0%
!! TAAGGTTGATGATGATGAGG+AGG + chr2.2:714089-714108 MS.gene83556:CDS 40.0%
!! TTGATCAGTTGATGGGGAAT+GGG + chr2.2:714511-714530 MS.gene83556:CDS 40.0%
!! TTTGATCAGTTGATGGGGAA+TGG + chr2.2:714510-714529 MS.gene83556:CDS 40.0%
!!! GCCTTTTTCGAGCTAAAATC+AGG - chr2.2:714735-714754 None:intergenic 40.0%
!!! TGGACAGCTTTTAAGTTCAC+AGG + chr2.2:715212-715231 MS.gene83556:CDS 40.0%
!!! TGGTGGGTTTTTAGGATCTA+AGG + chr2.2:714071-714090 MS.gene83556:CDS 40.0%
ACGCCAAACAGTGGATACTT+TGG + chr2.2:715082-715101 MS.gene83556:CDS 45.0%
AGAAGATGAACCGAGTAGGA+AGG + chr2.2:714856-714875 MS.gene83556:CDS 45.0%
AGTTCAAGGCCGAACTAAAC+CGG - chr2.2:714998-715017 None:intergenic 45.0%
CCAAGAACTTTCATGGTAGC+AGG - chr2.2:714243-714262 None:intergenic 45.0%
CCCTAAATGATGAACCGAAC+CGG - chr2.2:714487-714506 None:intergenic 45.0%
CCGATATACAACGAGCTTGA+AGG + chr2.2:714822-714841 MS.gene83556:CDS 45.0%
CCTGCTACCATGAAAGTTCT+TGG + chr2.2:714240-714259 MS.gene83556:CDS 45.0%
GAAAGTAGGAAGAGATCGCT+AGG + chr2.2:715131-715150 MS.gene83556:CDS 45.0%
GAAGATGAACCGAGTAGGAA+GGG + chr2.2:714857-714876 MS.gene83556:CDS 45.0%
GCTGTGACTGTTAGCATTGT+AGG + chr2.2:715353-715372 MS.gene83556:CDS 45.0%
GGAATAGGACCAACAACAAG+AGG - chr2.2:714144-714163 None:intergenic 45.0%
GTCCGGTTACCTATTATTCG+GGG + chr2.2:714923-714942 MS.gene83556:CDS 45.0%
TGTCGGCAATGTCTATAGCA+TGG + chr2.2:715379-715398 MS.gene83556:CDS 45.0%
TTGTAGTGACCCTTCCTACT+CGG - chr2.2:714869-714888 None:intergenic 45.0%
TTTCTCACTACGCCAAACAG+TGG + chr2.2:715073-715092 MS.gene83556:CDS 45.0%
!! CCGGTTCGGTTCATCATTTA+GGG + chr2.2:714484-714503 MS.gene83556:CDS 45.0%
!! CGGTTCGGTTCATCATTTAG+GGG + chr2.2:714485-714504 MS.gene83556:CDS 45.0%
!! GCGTAGAACGGATTTTGTCA+TGG + chr2.2:715315-715334 MS.gene83556:CDS 45.0%
!! TCCGGTTCGGTTCATCATTT+AGG + chr2.2:714483-714502 MS.gene83556:CDS 45.0%
!! TGATCAGTTGATGGGGAATG+GGG + chr2.2:714512-714531 MS.gene83556:CDS 45.0%
AGGGCTGACTGCAATTCTGT+TGG + chr2.2:715151-715170 MS.gene83556:CDS 50.0%
CCTACTCGGTTCATCTTCTG+CGG - chr2.2:714855-714874 None:intergenic 50.0%
CCTATTCCAAATCACGGGTC+TGG + chr2.2:714156-714175 MS.gene83556:CDS 50.0%
GAGATTTGAGCCGCGTAGAA+CGG + chr2.2:715303-715322 MS.gene83556:CDS 50.0%
GAGCTTGACTTCAGCTGCAT+CGG + chr2.2:714620-714639 MS.gene83556:CDS 50.0%
! CCAGACCCGTGATTTGGAAT+AGG - chr2.2:714159-714178 None:intergenic 50.0%
! GCAACAACGGCTGTTTCGTT+AGG + chr2.2:715236-715255 MS.gene83556:CDS 50.0%
! GTTGATGGGGAATGGGGTTT+GGG + chr2.2:714518-714537 MS.gene83556:CDS 50.0%
!! AGTTGATGGGGAATGGGGTT+TGG + chr2.2:714517-714536 MS.gene83556:CDS 50.0%
!!! GATGAGGGTGGTGGGTTTTT+AGG + chr2.2:714063-714082 MS.gene83556:CDS 50.0%
AATCACGGGTCTGGTGTACC+TGG + chr2.2:714165-714184 MS.gene83556:CDS 55.0%
ATGCTATGGGTAGGCCTGCT+AGG + chr2.2:714382-714401 MS.gene83556:CDS 55.0%
CCGCAGAAGATGAACCGAGT+AGG + chr2.2:714852-714871 MS.gene83556:CDS 55.0%
CTTGACTTCAGCTGCATCGG+TGG + chr2.2:714623-714642 MS.gene83556:CDS 55.0%
GGGGGATGTTATGTCCGGTT+CGG + chr2.2:714470-714489 MS.gene83556:CDS 55.0%
GGTACACCAGACCCGTGATT+TGG - chr2.2:714165-714184 None:intergenic 55.0%
TATGCTGCAACGGCACTGTC+CGG + chr2.2:714906-714925 MS.gene83556:CDS 55.0%
! GGAATGGGGTTTGGGATCAG+AGG + chr2.2:714526-714545 MS.gene83556:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 713952 715415 713952 ID=MS.gene83556
chr2.2 mRNA 713952 715415 713952 ID=MS.gene83556.t1;Parent=MS.gene83556
chr2.2 exon 713952 715415 713952 ID=MS.gene83556.t1.exon1;Parent=MS.gene83556.t1
chr2.2 CDS 713952 715415 713952 ID=cds.MS.gene83556.t1;Parent=MS.gene83556.t1
Gene Sequence

>MS.gene83556

ATGTCTCATAAGAATGATTCTAATTACACTTCAATACCTGTTAGTTCTTCATCATATTTAGAATTACAGCCACAGAATGATTCATCAAAATCTTTTCAAAGATTATCTTTTGATGAGGGTGGTGGGTTTTTAGGATCTAAGGTTGATGATGATGAGGAGGATGATTTTGAAATTGATATTGATAATTATCCTCTTGTTGTTGGTCCTATTCCAAATCACGGGTCTGGTGTACCTGGTGCTGTGTTTAATTTGACTACTACTATTATTGGGGCAGGAATTATGGCTCTTCCTGCTACCATGAAAGTTCTTGGTGTTGTTTTAGGGATTGTCTTGATTATTTTGATGGGGATTTTGTCGGAAATTAGTGTCGAATTGTTGGTGAGGTTTTCCGTTATGTGTAAAGCGTCATCTTATGGTGAGGTTGTTCAACATGCTATGGGTAGGCCTGCTAGGATTTTATCTGAGATTTGTATTATTTTGAACAATGCCGGTGTTTTAATTGTTTATTTGATTATAATGGGGGATGTTATGTCCGGTTCGGTTCATCATTTAGGGGTTTTTGATCAGTTGATGGGGAATGGGGTTTGGGATCAGAGGAAGCTTGTGATTCTTGTTGTTATGGTGGTTTTTCTTGCGCCACTTTGTTCGCTTGATAAGATTGATTCGTTGAGCTTGACTTCAGCTGCATCGGTGGCTCTTGCTATCTTGTTTGTTGTTGTCGCTTTCACTGTTGCTTTTATTAAGCTTGTTGAAGGAAAGATTGATGCTCCTAGGATGGTTCCTGATTTTAGCTCGAAAAAGGCTATCTTGGATTTGCTTGTTGTGATTCCAATCATGACAAATGCATATGTTTGTCATTTTAATGTGCAGCCGATATACAACGAGCTTGAAGGTAGGTCACCGCAGAAGATGAACCGAGTAGGAAGGGTCACTACAATTTTGTGCATCATGGTTTATGCTGCAACGGCACTGTCCGGTTACCTATTATTCGGGGATGATACTGAGTCTGATGTTTTGACTAATTTTGATAAGGATCTTGGAATCCGGTTTAGTTCGGCCTTGAACTATATCGTTCGAGTCGGCTACATTCTCCATTTGATACTTGTTTTCCCTGTTATTCATTTCTCACTACGCCAAACAGTGGATACTTTGGTATTTGAGGGATCACCTCCTTTATCAGAAAGTAGGAAGAGATCGCTAGGGCTGACTGCAATTCTGTTGGTTCTCATATATATCGGATGTACCATGATTCCAAACATCTGGACAGCTTTTAAGTTCACAGGTGCAACAACGGCTGTTTCGTTAGGTTTCATATTTCCACCTCTTGTTGCAATAAGATTAAGTCATCAGGGAGATTTGAGCCGCGTAGAACGGATTTTGTCATGGTTAATGTTGGTATTGGCTGTGACTGTTAGCATTGTAGGAGTTGTCGGCAATGTCTATAGCATGGAGAGTAAGTCTTAG
Protein sequence

>MS.gene83556.t1

MSHKNDSNYTSIPVSSSSYLELQPQNDSSKSFQRLSFDEGGGFLGSKVDDDEEDDFEIDIDNYPLVVGPIPNHGSGVPGAVFNLTTTIIGAGIMALPATMKVLGVVLGIVLIILMGILSEISVELLVRFSVMCKASSYGEVVQHAMGRPARILSEICIILNNAGVLIVYLIIMGDVMSGSVHHLGVFDQLMGNGVWDQRKLVILVVMVVFLAPLCSLDKIDSLSLTSAASVALAILFVVVAFTVAFIKLVEGKIDAPRMVPDFSSKKAILDLLVVIPIMTNAYVCHFNVQPIYNELEGRSPQKMNRVGRVTTILCIMVYAATALSGYLLFGDDTESDVLTNFDKDLGIRFSSALNYIVRVGYILHLILVFPVIHFSLRQTVDTLVFEGSPPLSESRKRSLGLTAILLVLIYIGCTMIPNIWTAFKFTGATTAVSLGFIFPPLVAIRLSHQGDLSRVERILSWLMLVLAVTVSIVGVVGNVYSMESKS