AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37173


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37173.t1 MTR_6g016270 89.177 462 34 1 1 446 1 462 0.0 796
MS.gene37173.t1 MTR_6g016295 82.119 453 65 1 9 445 4 456 0.0 726
MS.gene37173.t1 MTR_6g016245 79.418 447 76 1 16 446 9 455 0.0 720
MS.gene37173.t1 MTR_6g016275 78.834 463 79 3 1 447 1 460 0.0 719
MS.gene37173.t1 MTR_7g017630 70.259 464 119 3 1 446 1 463 0.0 655
MS.gene37173.t1 MTR_6g016245 73.086 431 64 1 16 446 9 387 0.0 633
MS.gene37173.t1 MTR_5g083760 43.852 431 222 4 29 439 11 441 3.90e-123 365
MS.gene37173.t1 MTR_5g083770 42.824 432 222 4 27 441 5 428 1.45e-116 348
MS.gene37173.t1 MTR_3g072110 43.510 416 215 4 48 445 25 438 4.92e-115 345
MS.gene37173.t1 MTR_2g104180 43.333 420 214 5 45 445 73 487 7.71e-110 333
MS.gene37173.t1 MTR_6g024240 62.963 270 29 3 194 447 38 252 4.08e-98 295
MS.gene37173.t1 MTR_1396s0010 54.511 266 83 3 198 447 1 244 1.24e-92 280
MS.gene37173.t1 MTR_1396s0010 57.214 201 69 2 178 362 1 200 1.87e-73 229
MS.gene37173.t1 MTR_8g065630 49.254 201 88 2 16 202 6 206 2.17e-54 181
MS.gene37173.t1 MTR_8g065650 50.761 197 83 2 16 198 6 202 6.01e-51 182
MS.gene37173.t1 MTR_0658s0030 58.537 123 50 1 325 447 1 122 1.68e-43 149
MS.gene37173.t1 MTR_3g072105 43.678 87 49 0 48 134 23 109 1.71e-18 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37173.t1 AT5G38820 61.074 447 149 5 20 445 13 455 0.0 553
MS.gene37173.t1 AT5G38820 61.074 447 149 5 20 445 8 450 0.0 552
MS.gene37173.t1 AT5G38820 61.074 447 149 5 20 445 8 450 0.0 552
MS.gene37173.t1 AT3G30390 60.626 447 157 3 17 445 11 456 0.0 549
MS.gene37173.t1 AT3G30390 60.626 447 157 3 17 445 11 456 0.0 549
MS.gene37173.t1 AT3G30390 60.626 447 157 3 17 445 11 456 0.0 549
MS.gene37173.t1 AT3G56200 42.191 429 226 4 30 441 9 432 5.30e-108 327
MS.gene37173.t1 AT2G40420 43.488 430 223 4 27 439 6 432 2.55e-104 317
MS.gene37173.t1 AT1G80510 39.709 481 227 8 14 445 22 488 1.31e-98 304
MS.gene37173.t1 AT2G41190 24.279 416 275 10 46 446 146 536 1.30e-14 76.3
MS.gene37173.t1 AT4G38250 22.759 435 268 14 26 427 22 421 2.69e-11 65.9
MS.gene37173.t1 AT5G02180 22.870 446 299 14 17 444 129 547 3.53e-11 65.5
MS.gene37173.t1 AT5G02180 22.870 446 299 14 17 444 129 547 3.53e-11 65.5

Find 87 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTGGTTTCCTTCTATT+TGG 0.154747 6.2:+11203295 MS.gene37173:CDS
AATTTGTCCACCACAATTAT+TGG 0.180714 6.2:+11201036 MS.gene37173:CDS
GCTGAGTTTCATGAATTTAA+TGG 0.194062 6.2:+11200988 MS.gene37173:CDS
ATTGTAGGTGATGTGATTTC+TGG 0.204897 6.2:+11201459 MS.gene37173:intron
TTCTTCCTATGGAAGTCTTA+TGG 0.207163 6.2:+11201194 MS.gene37173:CDS
CAATAATGCTGTTAGGATTA+TGG 0.267951 6.2:-11201121 None:intergenic
CAAATTTCATACCGAACATT+TGG 0.283518 6.2:+11203569 MS.gene37173:CDS
TCTTCCTATGGAAGTCTTAT+GGG 0.289755 6.2:+11201195 MS.gene37173:CDS
ACTTGCTGTGTTTGGACCTT+TGG 0.292291 6.2:+11201578 MS.gene37173:CDS
TTTACTACACTTGCTGTGTT+TGG 0.303084 6.2:+11201570 MS.gene37173:CDS
ATTGTTTACATGATCATTAT+TGG 0.304311 6.2:+11201288 MS.gene37173:CDS
TGCAAAACCAAGGAAGAAAA+AGG 0.318197 6.2:+11200915 MS.gene37173:CDS
TACGTACTGACAAGCTTCTT+TGG 0.325327 6.2:+11203280 MS.gene37173:CDS
CTCAATGCATAGAAAATTAC+AGG 0.336695 6.2:-11203436 None:intergenic
TTTAATGGAGCTTCATTTCC+TGG 0.343179 6.2:+11201003 MS.gene37173:CDS
CTTGTTGTCATTGTCTTCCT+CGG 0.361098 6.2:+11203544 MS.gene37173:CDS
GTGATTTCTGGAACGACTTC+AGG 0.369597 6.2:+11201471 MS.gene37173:CDS
TCTCTCTCAATAATGCTGTT+AGG 0.371946 6.2:-11201128 None:intergenic
TTCACATCTGCATTATCAAT+TGG 0.372056 6.2:+11202594 MS.gene37173:CDS
TTCCAGCTGCAATCGCTCTA+AGG 0.372710 6.2:+11203644 MS.gene37173:CDS
TCCACCACAATTATTGGTGC+TGG 0.373408 6.2:+11201042 MS.gene37173:CDS
CACCTGTTGCTCCAGTGAAT+TGG 0.376723 6.2:-11203600 None:intergenic
AGTCTTATGGGAGATACCTT+TGG 0.377085 6.2:+11201207 MS.gene37173:CDS
TTTGGTGTTCATTGGTGGAC+TGG 0.377433 6.2:+11201528 MS.gene37173:CDS
TTCCAATTCACTGGAGCAAC+AGG 0.378767 6.2:+11203598 MS.gene37173:CDS
AAGGATGGTTTGGTGTTCAT+TGG 0.379522 6.2:+11201520 MS.gene37173:CDS
AATTATTGGTGCTGGGATCA+TGG 0.383153 6.2:+11201050 MS.gene37173:CDS
TTCCTCATCAAGAAGGCCTT+TGG 0.387053 6.2:+11203483 MS.gene37173:CDS
GTCTTATGGGAGATACCTTT+GGG 0.394756 6.2:+11201208 MS.gene37173:CDS
AAATTTCATACCGAACATTT+GGG 0.400729 6.2:+11203570 MS.gene37173:CDS
TTGGTCAGCTTAAAGCGAAT+TGG 0.402046 6.2:+11201597 MS.gene37173:CDS
TTGGTGTTCATTGGTGGACT+GGG 0.417340 6.2:+11201529 MS.gene37173:CDS
GCATTAGCTACAAGAGCATC+AGG 0.419568 6.2:-11200895 None:intergenic
CACCATCCTGGTATCCTTGA+AGG 0.427798 6.2:+11201501 MS.gene37173:CDS
GCAGGGAATCTTTCTTCCTA+TGG 0.437556 6.2:+11201183 MS.gene37173:CDS
GGAGATACCTTTGGGAAATA+CGG 0.437934 6.2:+11201216 MS.gene37173:CDS
GAGTTCCTTCACCAAATAGA+AGG 0.445347 6.2:-11203306 None:intergenic
CACCTTAGAGCGATTGCAGC+TGG 0.449891 6.2:-11203646 None:intergenic
AACTAAAACAGATACGATTC+TGG 0.460597 6.2:+11203783 MS.gene37173:CDS
GAACACCAAACCATCCTTCA+AGG 0.462796 6.2:-11201515 None:intergenic
GGTATCCTTGAAGGATGGTT+TGG 0.466861 6.2:+11201510 MS.gene37173:CDS
GATGGTTTGGTGTTCATTGG+TGG 0.473669 6.2:+11201523 MS.gene37173:CDS
GGTTTCCTTCTATTTGGTGA+AGG 0.479278 6.2:+11203301 MS.gene37173:CDS
AGGCAATTGAGTTCATGATC+AGG 0.483659 6.2:+11201151 MS.gene37173:CDS
TTAATGGAGCTTCATTTCCT+GGG 0.487705 6.2:+11201004 MS.gene37173:CDS
ATTATTGGTGCTGGGATCAT+GGG 0.488448 6.2:+11201051 MS.gene37173:CDS
TCATAACATTGATAATGAAC+TGG 0.495103 6.2:+11203198 MS.gene37173:CDS
GGCTGTCCTTATGATAGTGC+TGG 0.498510 6.2:+11203804 MS.gene37173:CDS
GCATTGAGGTTCAACGTAGA+TGG 0.498672 6.2:+11203451 MS.gene37173:CDS
GAGGATTCCTCACGGATGCG+TGG 0.508056 6.2:+11203220 MS.gene37173:CDS
TGGAAAATAACCCAAATGTT+CGG 0.513300 6.2:-11203580 None:intergenic
AGGATTCCTCACGGATGCGT+GGG 0.514657 6.2:+11203221 MS.gene37173:CDS
ATACTGAAGAGCATAGAGTA+AGG 0.520555 6.2:-11203258 None:intergenic
CCACCACAATTATTGGTGCT+GGG 0.526070 6.2:+11201043 MS.gene37173:CDS
GCATCTGTTTCTTGACACAT+AGG 0.538575 6.2:-11200967 None:intergenic
TGTGTTATAATCACTAATGT+TGG 0.545556 6.2:+11201258 MS.gene37173:CDS
AAACTGCCAGCACTATCATA+AGG 0.546321 6.2:-11203810 None:intergenic
AGGATTATGGCAAGAAGACC+AGG 0.549978 6.2:-11201108 None:intergenic
GACAAATTGAAAACAGCCCC+AGG 0.556593 6.2:-11201021 None:intergenic
TCAGGTGGAATTCACCATCC+TGG 0.566685 6.2:+11201489 MS.gene37173:CDS
AACCAAAGGCCTTCTTGATG+AGG 0.573378 6.2:-11203485 None:intergenic
TCATTAAGAGTAGAACCAAA+AGG 0.575531 6.2:-11203370 None:intergenic
ATCTCCCATAAGACTTCCAT+AGG 0.579026 6.2:-11201199 None:intergenic
CGAGGAAGACAATGACAACA+AGG 0.579561 6.2:-11203543 None:intergenic
ATTTCTGGAACGACTTCAGG+TGG 0.580424 6.2:+11201474 MS.gene37173:CDS
AACCATCCTTCAAGGATACC+AGG 0.580545 6.2:-11201507 None:intergenic
AACAGCATTATTGAGAGAGA+AGG 0.582939 6.2:+11201131 MS.gene37173:CDS
ATCCTGGTATCCTTGAAGGA+TGG 0.589559 6.2:+11201505 MS.gene37173:CDS
TACTGAAGAGCATAGAGTAA+GGG 0.597984 6.2:-11203257 None:intergenic
TAATGGAGCTTCATTTCCTG+GGG 0.598538 6.2:+11201005 MS.gene37173:CDS
TGGGAAATACGGAAAAGCAC+TGG 0.598996 6.2:+11201227 MS.gene37173:CDS
CCCAGCACCAATAATTGTGG+TGG 0.600660 6.2:-11201043 None:intergenic
ATGTAAGCTGTCATCAGCAC+AGG 0.604612 6.2:-11202750 None:intergenic
TAACATTGATAATGAACTGG+AGG 0.604897 6.2:+11203201 MS.gene37173:CDS
AAATCCCACCAGCAATGACA+AGG 0.625030 6.2:-11202632 None:intergenic
GATCCCAGCACCAATAATTG+TGG 0.627398 6.2:-11201046 None:intergenic
ATTCGCTTTAAGCTGACCAA+AGG 0.630059 6.2:-11201594 None:intergenic
CTGTAGTTATCAACAACCAA+AGG 0.632662 6.2:-11203499 None:intergenic
TCTTGACACATAGGTAACAA+AGG 0.635888 6.2:-11200958 None:intergenic
GCTTACATCTGTCACTACAA+TGG 0.643311 6.2:+11202765 MS.gene37173:CDS
ATCCTTCAAGGATACCAGGA+TGG 0.644563 6.2:-11201503 None:intergenic
GGATTCCTCACGGATGCGTG+GGG 0.652593 6.2:+11203222 MS.gene37173:CDS
ATGAACTGGAGGATTCCTCA+CGG 0.679968 6.2:+11203212 MS.gene37173:CDS
GAGGAAGACAATGACAACAA+GGG 0.687094 6.2:-11203542 None:intergenic
CACAACCCCACGCATCCGTG+AGG 0.689700 6.2:-11203227 None:intergenic
TTGTAGCTAATGCAAAACCA+AGG 0.695452 6.2:+11200905 MS.gene37173:CDS
TCGGTATGAAATTTGCTCCG+AGG 0.700660 6.2:-11203561 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTGTAAATTGAAAAAAA+TGG + chr6.2:11201784-11201803 MS.gene37173:intron 10.0%
!! TGATTAATGATTATATATTT+GGG + chr6.2:11202228-11202247 MS.gene37173:intron 10.0%
!! ATATAATCATTAATCAGTAT+AGG - chr6.2:11202224-11202243 None:intergenic 15.0%
!! CTGATTAATGATTATATATT+TGG + chr6.2:11202227-11202246 MS.gene37173:intron 15.0%
!! GATTAATGATTATATATTTG+GGG + chr6.2:11202229-11202248 MS.gene37173:intron 15.0%
!! TCAATTTACAAATAATGAAA+TGG - chr6.2:11201778-11201797 None:intergenic 15.0%
!!! AGATTATTTTAGTTAATTTC+TGG + chr6.2:11203074-11203093 MS.gene37173:intron 15.0%
!! AAATTCAAAATGCATATACT+CGG + chr6.2:11202006-11202025 MS.gene37173:intron 20.0%
!! ATTGTTTACATGATCATTAT+TGG + chr6.2:11201288-11201307 MS.gene37173:CDS 20.0%
!! ATTGTTTGATCATAAGAAAT+AGG - chr6.2:11201906-11201925 None:intergenic 20.0%
!! GAAGTAGTAATTTATTCATT+TGG - chr6.2:11202360-11202379 None:intergenic 20.0%
!! GAGTAAAAACATTAAAACAA+GGG - chr6.2:11202828-11202847 None:intergenic 20.0%
!! TCAATTATCAAGATTATTAG+TGG + chr6.2:11202654-11202673 MS.gene37173:intron 20.0%
!! TGAGTAAAAACATTAAAACA+AGG - chr6.2:11202829-11202848 None:intergenic 20.0%
!!! AGAAAACATGATTTTATACT+AGG - chr6.2:11202315-11202334 None:intergenic 20.0%
! AAACATTAAAACAAGGGAAA+CGG - chr6.2:11202822-11202841 None:intergenic 25.0%
! AAATTTCATACCGAACATTT+GGG + chr6.2:11203570-11203589 MS.gene37173:CDS 25.0%
! AAGATTATTAGTGGAAACAT+TGG + chr6.2:11202663-11202682 MS.gene37173:intron 25.0%
! AATCTACATCAGTAATGATA+GGG - chr6.2:11202704-11202723 None:intergenic 25.0%
! AATTGAAAAAAATGGTCACA+AGG + chr6.2:11201792-11201811 MS.gene37173:intron 25.0%
! AGAAAAATAGAGATGTCATA+TGG + chr6.2:11201858-11201877 MS.gene37173:intron 25.0%
! AGATTATTAGTGGAAACATT+GGG + chr6.2:11202664-11202683 MS.gene37173:intron 25.0%
! ATAGATTAGATGACAATGTT+AGG + chr6.2:11201714-11201733 MS.gene37173:intron 25.0%
! TAATCAACTAAAACAGAAAC+TGG - chr6.2:11201376-11201395 None:intergenic 25.0%
! TCATAAAACATGTAAAACCA+AGG - chr6.2:11202467-11202486 None:intergenic 25.0%
! TGTGTTATAATCACTAATGT+TGG + chr6.2:11201258-11201277 MS.gene37173:CDS 25.0%
! TTATAAAAAGTTGACATGCA+TGG - chr6.2:11202970-11202989 None:intergenic 25.0%
! TTATGCTTATTAGGTACAAA+TGG + chr6.2:11202253-11202272 MS.gene37173:intron 25.0%
!! ACTAAAATTTGTTTGCTTCA+TGG + chr6.2:11203125-11203144 MS.gene37173:intron 25.0%
!! CTTTTCAAATTAGTTGGAAA+TGG - chr6.2:11202944-11202963 None:intergenic 25.0%
!! TATTTTTCTTCACCCAATTT+GGG - chr6.2:11201847-11201866 None:intergenic 25.0%
!! TGGTTTCTTTTCAAATTAGT+TGG - chr6.2:11202950-11202969 None:intergenic 25.0%
!!! GCAAATTTTGATACTGATTT+TGG + chr6.2:11203343-11203362 MS.gene37173:CDS 25.0%
!!! GTGAAATTCTAAGTTTGTTA+TGG + chr6.2:11202859-11202878 MS.gene37173:intron 25.0%
!!! TCATAACATTGATAATGAAC+TGG + chr6.2:11203198-11203217 MS.gene37173:CDS 25.0%
!!! TTTGGTTTTGTTTGTATTGT+AGG + chr6.2:11201444-11201463 MS.gene37173:intron 25.0%
!!! TTTTTTCTGTTTTTGTACCT+TGG + chr6.2:11202447-11202466 MS.gene37173:intron 25.0%
AACTAAAACAGATACGATTC+TGG + chr6.2:11203783-11203802 MS.gene37173:CDS 30.0%
AATTTGTCCACCACAATTAT+TGG + chr6.2:11201036-11201055 MS.gene37173:CDS 30.0%
ACTTGAGCAAAAATACGAAA+AGG - chr6.2:11202386-11202405 None:intergenic 30.0%
CAAATTTCATACCGAACATT+TGG + chr6.2:11203569-11203588 MS.gene37173:CDS 30.0%
CAATAATGCTGTTAGGATTA+TGG - chr6.2:11201124-11201143 None:intergenic 30.0%
CTCAATGCATAGAAAATTAC+AGG - chr6.2:11203439-11203458 None:intergenic 30.0%
CTGAACATAACATTGCATAA+AGG - chr6.2:11202095-11202114 None:intergenic 30.0%
CTTGAGCAAAAATACGAAAA+GGG - chr6.2:11202385-11202404 None:intergenic 30.0%
CTTTATGCAATGTTATGTTC+AGG + chr6.2:11202093-11202112 MS.gene37173:intron 30.0%
GAATCTACATCAGTAATGAT+AGG - chr6.2:11202705-11202724 None:intergenic 30.0%
GCATAAAGGATTCAATTTGT+TGG - chr6.2:11202081-11202100 None:intergenic 30.0%
GCTGAGTTTCATGAATTTAA+TGG + chr6.2:11200988-11201007 MS.gene37173:CDS 30.0%
TCATTAAGAGTAGAACCAAA+AGG - chr6.2:11203373-11203392 None:intergenic 30.0%
TCTGTTTAGACCAAAACTTA+AGG + chr6.2:11201408-11201427 MS.gene37173:intron 30.0%
TGGAAAATAACCCAAATGTT+CGG - chr6.2:11203583-11203602 None:intergenic 30.0%
TTCACATCTGCATTATCAAT+TGG + chr6.2:11202594-11202613 MS.gene37173:CDS 30.0%
TTGAGCAAAAATACGAAAAG+GGG - chr6.2:11202384-11202403 None:intergenic 30.0%
! AAGCATTTTCTTTTCCTACA+GGG + chr6.2:11203744-11203763 MS.gene37173:intron 30.0%
! AATCATGCAACCTTAAGTTT+TGG - chr6.2:11201421-11201440 None:intergenic 30.0%
! ATTTGGGGTTTATGCTTATT+AGG + chr6.2:11202244-11202263 MS.gene37173:intron 30.0%
! CTAGCACTGAAAAATTTGTA+TGG + chr6.2:11201330-11201349 MS.gene37173:intron 30.0%
! CTGTAATTTTCTATGCATTG+AGG + chr6.2:11203437-11203456 MS.gene37173:CDS 30.0%
! TAAGCATTTTCTTTTCCTAC+AGG + chr6.2:11203743-11203762 MS.gene37173:intron 30.0%
! TGATATTTTCCTCATCAAGA+AGG + chr6.2:11203476-11203495 MS.gene37173:CDS 30.0%
! TGTTTTCTTGCTAAGTTGTT+TGG + chr6.2:11202327-11202346 MS.gene37173:intron 30.0%
! TTATGTTCAGGTTATGTGAT+AGG + chr6.2:11202105-11202124 MS.gene37173:intron 30.0%
! TTCTTGCATTACAGCAATTT+TGG + chr6.2:11201631-11201650 MS.gene37173:intron 30.0%
! TTCTTTGGTTTCCTTCTATT+TGG + chr6.2:11203295-11203314 MS.gene37173:CDS 30.0%
!! CTATTTTTCTTCACCCAATT+TGG - chr6.2:11201848-11201867 None:intergenic 30.0%
!! TAACATTGATAATGAACTGG+AGG + chr6.2:11203201-11203220 MS.gene37173:CDS 30.0%
!!! ACTGATTTTGGAATTCCTTT+TGG + chr6.2:11203355-11203374 MS.gene37173:CDS 30.0%
AAATTCAGCTGCATTATCTG+TGG + chr6.2:11202551-11202570 MS.gene37173:intron 35.0%
AACAGCATTATTGAGAGAGA+AGG + chr6.2:11201131-11201150 MS.gene37173:CDS 35.0%
AGTAATGATAGGGAAGAGTT+AGG - chr6.2:11202694-11202713 None:intergenic 35.0%
ATGATATTGATGCCTTTGCA+CGG + chr6.2:11202996-11203015 MS.gene37173:intron 35.0%
ATTGTAGGTGATGTGATTTC+TGG + chr6.2:11201459-11201478 MS.gene37173:intron 35.0%
CACTGAAAAATTTGTATGGC+TGG + chr6.2:11201334-11201353 MS.gene37173:intron 35.0%
CAGTGCTAGACTTAAGAATA+AGG - chr6.2:11201319-11201338 None:intergenic 35.0%
CTGTAGTTATCAACAACCAA+AGG - chr6.2:11203502-11203521 None:intergenic 35.0%
GTAATGATAGGGAAGAGTTA+GGG - chr6.2:11202693-11202712 None:intergenic 35.0%
GTACTTGAGTGATGAGTAAT+GGG - chr6.2:11202286-11202305 None:intergenic 35.0%
GTCTAACCACTGATATAGTT+AGG + chr6.2:11202140-11202159 MS.gene37173:intron 35.0%
GTTATGGATTTCCATGAAGA+AGG + chr6.2:11202875-11202894 MS.gene37173:intron 35.0%
TAAGGTTGCATGATTCAGTT+TGG + chr6.2:11201426-11201445 MS.gene37173:intron 35.0%
TCTCTCTCAATAATGCTGTT+AGG - chr6.2:11201131-11201150 None:intergenic 35.0%
TCTTGACACATAGGTAACAA+AGG - chr6.2:11200961-11200980 None:intergenic 35.0%
TGCAAAACCAAGGAAGAAAA+AGG + chr6.2:11200915-11200934 MS.gene37173:CDS 35.0%
TGCTTCATGGATTTATTGTC+TGG + chr6.2:11203138-11203157 MS.gene37173:intron 35.0%
TGTACTTGAGTGATGAGTAA+TGG - chr6.2:11202287-11202306 None:intergenic 35.0%
TTAATGGAGCTTCATTTCCT+GGG + chr6.2:11201004-11201023 MS.gene37173:CDS 35.0%
TTCATGGATTTATTGTCTGG+TGG + chr6.2:11203141-11203160 MS.gene37173:intron 35.0%
TTCTTCCTATGGAAGTCTTA+TGG + chr6.2:11201194-11201213 MS.gene37173:CDS 35.0%
TTGATCAGCTTAAAGCGATT+TGG + chr6.2:11201658-11201677 MS.gene37173:intron 35.0%
TTGGAAATGGAATGAAGTGA+TGG - chr6.2:11202931-11202950 None:intergenic 35.0%
TTGTAGCTAATGCAAAACCA+AGG + chr6.2:11200905-11200924 MS.gene37173:CDS 35.0%
TTTAATGGAGCTTCATTTCC+TGG + chr6.2:11201003-11201022 MS.gene37173:CDS 35.0%
! AAATCGCTTTAAGCTGATCA+AGG - chr6.2:11201659-11201678 None:intergenic 35.0%
! AATCGCTTTAAGCTGATCAA+GGG - chr6.2:11201658-11201677 None:intergenic 35.0%
! ACAACTTCCTTTTTCTTCCT+TGG - chr6.2:11200925-11200944 None:intergenic 35.0%
! ATACTGAAGAGCATAGAGTA+AGG - chr6.2:11203261-11203280 None:intergenic 35.0%
! TACTGAAGAGCATAGAGTAA+GGG - chr6.2:11203260-11203279 None:intergenic 35.0%
! TCTTCCTATGGAAGTCTTAT+GGG + chr6.2:11201195-11201214 MS.gene37173:CDS 35.0%
! TTAGAGTACTCATGCAACAT+AGG - chr6.2:11202180-11202199 None:intergenic 35.0%
!! TCATGCAACATAGGTTTTAG+AGG - chr6.2:11202171-11202190 None:intergenic 35.0%
!! TGGGTTATTTTCCAATTCAC+TGG + chr6.2:11203589-11203608 MS.gene37173:CDS 35.0%
!! TTTACTACACTTGCTGTGTT+TGG + chr6.2:11201570-11201589 MS.gene37173:CDS 35.0%
!! TTTGTTAAAGAAGTGTCGCA+TGG - chr6.2:11202534-11202553 None:intergenic 35.0%
AAAAAGTTGGGAATGGTACC+TGG + chr6.2:11201090-11201109 MS.gene37173:CDS 40.0%
AAAAGACTAATGCCGTGCAA+AGG - chr6.2:11203011-11203030 None:intergenic 40.0%
AAACTGCCAGCACTATCATA+AGG - chr6.2:11203813-11203832 None:intergenic 40.0%
AAGATGACTCAAACACTGGA+TGG + chr6.2:11201737-11201756 MS.gene37173:intron 40.0%
AGGCAATTGAGTTCATGATC+AGG + chr6.2:11201151-11201170 MS.gene37173:CDS 40.0%
ATCTCCCATAAGACTTCCAT+AGG - chr6.2:11201202-11201221 None:intergenic 40.0%
ATGGAATGAAGTGATGGTTG+TGG - chr6.2:11202925-11202944 None:intergenic 40.0%
GAGGAAGACAATGACAACAA+GGG - chr6.2:11203545-11203564 None:intergenic 40.0%
GAGTTCCTTCACCAAATAGA+AGG - chr6.2:11203309-11203328 None:intergenic 40.0%
GATGAGCCTAACTATATCAG+TGG - chr6.2:11202149-11202168 None:intergenic 40.0%
GATTTCCATGAAGAAGGTTG+AGG + chr6.2:11202881-11202900 MS.gene37173:intron 40.0%
GCTTACATCTGTCACTACAA+TGG + chr6.2:11202765-11202784 MS.gene37173:CDS 40.0%
GTCTTATGGGAGATACCTTT+GGG + chr6.2:11201208-11201227 MS.gene37173:CDS 40.0%
TAATGGAGCTTCATTTCCTG+GGG + chr6.2:11201005-11201024 MS.gene37173:CDS 40.0%
TACACTGCCTGTATCAATAC+CGG + chr6.2:11202495-11202514 MS.gene37173:intron 40.0%
TAGGAAGATGACTCAAACAC+TGG + chr6.2:11201733-11201752 MS.gene37173:intron 40.0%
TATTGATACAGGCAGTGTAC+AGG - chr6.2:11202494-11202513 None:intergenic 40.0%
TCGGTCACTGAATTCATACA+GGG + chr6.2:11203672-11203691 MS.gene37173:intron 40.0%
TTCGGTCACTGAATTCATAC+AGG + chr6.2:11203671-11203690 MS.gene37173:intron 40.0%
TTGCGTCAAAAAGTTGGGAA+TGG + chr6.2:11201083-11201102 MS.gene37173:CDS 40.0%
TTGGTCAGCTTAAAGCGAAT+TGG + chr6.2:11201597-11201616 MS.gene37173:CDS 40.0%
TTTCTTCACCCAATTTGGGA+CGG - chr6.2:11201843-11201862 None:intergenic 40.0%
! AGTCTTATGGGAGATACCTT+TGG + chr6.2:11201207-11201226 MS.gene37173:CDS 40.0%
! AGTTCATGATCAGGTTTTCG+AGG + chr6.2:11201160-11201179 MS.gene37173:CDS 40.0%
! ATTCGCTTTAAGCTGACCAA+AGG - chr6.2:11201597-11201616 None:intergenic 40.0%
! CTTGTTGTCATTGTCTTCCT+CGG + chr6.2:11203544-11203563 MS.gene37173:CDS 40.0%
! GCATCTGTTTCTTGACACAT+AGG - chr6.2:11200970-11200989 None:intergenic 40.0%
! GGAGATACCTTTGGGAAATA+CGG + chr6.2:11201216-11201235 MS.gene37173:CDS 40.0%
! GGTTTCCTTCTATTTGGTGA+AGG + chr6.2:11203301-11203320 MS.gene37173:CDS 40.0%
! GTTCATGATCAGGTTTTCGA+GGG + chr6.2:11201161-11201180 MS.gene37173:CDS 40.0%
! GTTCTTTTCCTTGTCATTGC+TGG + chr6.2:11202624-11202643 MS.gene37173:CDS 40.0%
! TACGTACTGACAAGCTTCTT+TGG + chr6.2:11203280-11203299 MS.gene37173:CDS 40.0%
! TATGTTGTATCGATCCCTGT+AGG - chr6.2:11203761-11203780 None:intergenic 40.0%
! TGCTTTTCCGTATTTCCCAA+AGG - chr6.2:11201226-11201245 None:intergenic 40.0%
! TGTTCAGGTTATGTGATAGG+AGG + chr6.2:11202108-11202127 MS.gene37173:intron 40.0%
! TTTTCCTTGTCATTGCTGGT+GGG + chr6.2:11202628-11202647 MS.gene37173:CDS 40.0%
!! AAGGATGGTTTGGTGTTCAT+TGG + chr6.2:11201520-11201539 MS.gene37173:CDS 40.0%
!! AATTATTGGTGCTGGGATCA+TGG + chr6.2:11201050-11201069 MS.gene37173:CDS 40.0%
!! ATTATTGGTGCTGGGATCAT+GGG + chr6.2:11201051-11201070 MS.gene37173:CDS 40.0%
!! GGGAAACGGTTTTTAAGCAA+AGG - chr6.2:11202808-11202827 None:intergenic 40.0%
AAATCCCACCAGCAATGACA+AGG - chr6.2:11202635-11202654 None:intergenic 45.0%
AACCAAAGGCCTTCTTGATG+AGG - chr6.2:11203488-11203507 None:intergenic 45.0%
AACCATCCTTCAAGGATACC+AGG - chr6.2:11201510-11201529 None:intergenic 45.0%
AACGACCTCAACCTTCTTCA+TGG - chr6.2:11202889-11202908 None:intergenic 45.0%
AGGATTATGGCAAGAAGACC+AGG - chr6.2:11201111-11201130 None:intergenic 45.0%
ATCCTGGTATCCTTGAAGGA+TGG + chr6.2:11201505-11201524 MS.gene37173:CDS 45.0%
ATCCTTCAAGGATACCAGGA+TGG - chr6.2:11201506-11201525 None:intergenic 45.0%
ATGAACTGGAGGATTCCTCA+CGG + chr6.2:11203212-11203231 MS.gene37173:CDS 45.0%
ATGTAAGCTGTCATCAGCAC+AGG - chr6.2:11202753-11202772 None:intergenic 45.0%
CAGGTTATGTGATAGGAGGA+TGG + chr6.2:11202112-11202131 MS.gene37173:intron 45.0%
CCTGCTTGCGTCAAAAAGTT+GGG + chr6.2:11201078-11201097 MS.gene37173:CDS 45.0%
CGAGGAAGACAATGACAACA+AGG - chr6.2:11203546-11203565 None:intergenic 45.0%
GAACACCAAACCATCCTTCA+AGG - chr6.2:11201518-11201537 None:intergenic 45.0%
GACAAATTGAAAACAGCCCC+AGG - chr6.2:11201024-11201043 None:intergenic 45.0%
GACTCAAACACTGGATGGTA+TGG + chr6.2:11201742-11201761 MS.gene37173:intron 45.0%
GATCCCAGCACCAATAATTG+TGG - chr6.2:11201049-11201068 None:intergenic 45.0%
GATTCCTTCCGTCCCAAATT+GGG + chr6.2:11201832-11201851 MS.gene37173:intron 45.0%
GCAGGGAATCTTTCTTCCTA+TGG + chr6.2:11201183-11201202 MS.gene37173:CDS 45.0%
GCATTGAGGTTCAACGTAGA+TGG + chr6.2:11203451-11203470 MS.gene37173:CDS 45.0%
GCTTAAAGCGAATTGGTGAG+TGG + chr6.2:11201604-11201623 MS.gene37173:intron 45.0%
GGTATCCTTGAAGGATGGTT+TGG + chr6.2:11201510-11201529 MS.gene37173:CDS 45.0%
TCCACCACAATTATTGGTGC+TGG + chr6.2:11201042-11201061 MS.gene37173:CDS 45.0%
TCTGGTTGTGTACCCTTAGT+CGG + chr6.2:11203092-11203111 MS.gene37173:intron 45.0%
TGATTCCTTCCGTCCCAAAT+TGG + chr6.2:11201831-11201850 MS.gene37173:intron 45.0%
TTCCAATTCACTGGAGCAAC+AGG + chr6.2:11203598-11203617 MS.gene37173:CDS 45.0%
TTCCTCATCAAGAAGGCCTT+TGG + chr6.2:11203483-11203502 MS.gene37173:CDS 45.0%
! CCACCACAATTATTGGTGCT+GGG + chr6.2:11201043-11201062 MS.gene37173:CDS 45.0%
! CTTTTCCTTGTCATTGCTGG+TGG + chr6.2:11202627-11202646 MS.gene37173:CDS 45.0%
! TCGGTATGAAATTTGCTCCG+AGG - chr6.2:11203564-11203583 None:intergenic 45.0%
! TGGGAAATACGGAAAAGCAC+TGG + chr6.2:11201227-11201246 MS.gene37173:CDS 45.0%
!! ACTTGCTGTGTTTGGACCTT+TGG + chr6.2:11201578-11201597 MS.gene37173:CDS 45.0%
!! ATTTCTGGAACGACTTCAGG+TGG + chr6.2:11201474-11201493 MS.gene37173:CDS 45.0%
!! CAATCGCTCTAAGGTGAGTT+CGG + chr6.2:11203653-11203672 MS.gene37173:intron 45.0%
!! GATGGTTTGGTGTTCATTGG+TGG + chr6.2:11201523-11201542 MS.gene37173:CDS 45.0%
!! GCATTAGCTACAAGAGCATC+AGG - chr6.2:11200898-11200917 None:intergenic 45.0%
!! GGCAGTTTTGTCAAATGCTG+TGG + chr6.2:11203825-11203844 MS.gene37173:CDS 45.0%
!! GTGATTTCTGGAACGACTTC+AGG + chr6.2:11201471-11201490 MS.gene37173:CDS 45.0%
!! TTGAGCACCGGTATTGATAC+AGG - chr6.2:11202505-11202524 None:intergenic 45.0%
!! TTGGTGTTCATTGGTGGACT+GGG + chr6.2:11201529-11201548 MS.gene37173:CDS 45.0%
!! TTTGGTGTTCATTGGTGGAC+TGG + chr6.2:11201528-11201547 MS.gene37173:CDS 45.0%
!! CAAATTAAAAAAAAAAAAAA+TGG + chr6.2:11201983-11202002 MS.gene37173:intron 5.0%
!!! TTTTTTTTTTTTTAATTTGT+TGG - chr6.2:11201982-11202001 None:intergenic 5.0%
AGTCTTCCCAGTTCCGACTA+AGG - chr6.2:11203108-11203127 None:intergenic 50.0%
CACCATCCTGGTATCCTTGA+AGG + chr6.2:11201501-11201520 MS.gene37173:CDS 50.0%
CACCTGTTGCTCCAGTGAAT+TGG - chr6.2:11203603-11203622 None:intergenic 50.0%
CCCAGCACCAATAATTGTGG+TGG - chr6.2:11201046-11201065 None:intergenic 50.0%
GCATGGACATAGTTGAGCAC+CGG - chr6.2:11202517-11202536 None:intergenic 50.0%
GCCTGCTTGCGTCAAAAAGT+TGG + chr6.2:11201077-11201096 MS.gene37173:CDS 50.0%
GTCTTCCCAGTTCCGACTAA+GGG - chr6.2:11203107-11203126 None:intergenic 50.0%
GTGTACCCTTAGTCGGAACT+GGG + chr6.2:11203099-11203118 MS.gene37173:intron 50.0%
TCAGGTGGAATTCACCATCC+TGG + chr6.2:11201489-11201508 MS.gene37173:CDS 50.0%
TGTGTACCCTTAGTCGGAAC+TGG + chr6.2:11203098-11203117 MS.gene37173:intron 50.0%
TTCCAGCTGCAATCGCTCTA+AGG + chr6.2:11203644-11203663 MS.gene37173:CDS 50.0%
! CCCAACTTTTTGACGCAAGC+AGG - chr6.2:11201081-11201100 None:intergenic 50.0%
! GGCTGTCCTTATGATAGTGC+TGG + chr6.2:11203804-11203823 MS.gene37173:CDS 50.0%
! TTCACCCAATTTGGGACGGA+AGG - chr6.2:11201839-11201858 None:intergenic 50.0%
!! ATGATCAGGTTTTCGAGGGC+AGG + chr6.2:11201165-11201184 MS.gene37173:CDS 50.0%
!! TGATCAGGTTTTCGAGGGCA+GGG + chr6.2:11201166-11201185 MS.gene37173:CDS 50.0%
AGGATTCCTCACGGATGCGT+GGG + chr6.2:11203221-11203240 MS.gene37173:CDS 55.0%
CACCTTAGAGCGATTGCAGC+TGG - chr6.2:11203649-11203668 None:intergenic 55.0%
GAGGATTCCTCACGGATGCG+TGG + chr6.2:11203220-11203239 MS.gene37173:CDS 60.0%
GGATTCCTCACGGATGCGTG+GGG + chr6.2:11203222-11203241 MS.gene37173:CDS 60.0%
CACAACCCCACGCATCCGTG+AGG - chr6.2:11203230-11203249 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 11200874 11203894 11200874 ID=MS.gene37173
chr6.2 mRNA 11200874 11203894 11200874 ID=MS.gene37173.t1;Parent=MS.gene37173
chr6.2 exon 11200874 11201309 11200874 ID=MS.gene37173.t1.exon1;Parent=MS.gene37173.t1
chr6.2 CDS 11200874 11201309 11200874 ID=cds.MS.gene37173.t1;Parent=MS.gene37173.t1
chr6.2 exon 11201466 11201618 11201466 ID=MS.gene37173.t1.exon2;Parent=MS.gene37173.t1
chr6.2 CDS 11201466 11201618 11201466 ID=cds.MS.gene37173.t1;Parent=MS.gene37173.t1
chr6.2 exon 11202583 11202672 11202583 ID=MS.gene37173.t1.exon3;Parent=MS.gene37173.t1
chr6.2 CDS 11202583 11202672 11202583 ID=cds.MS.gene37173.t1;Parent=MS.gene37173.t1
chr6.2 exon 11202721 11202786 11202721 ID=MS.gene37173.t1.exon4;Parent=MS.gene37173.t1
chr6.2 CDS 11202721 11202786 11202721 ID=cds.MS.gene37173.t1;Parent=MS.gene37173.t1
chr6.2 exon 11203197 11203665 11203197 ID=MS.gene37173.t1.exon5;Parent=MS.gene37173.t1
chr6.2 CDS 11203197 11203665 11203197 ID=cds.MS.gene37173.t1;Parent=MS.gene37173.t1
chr6.2 exon 11203765 11203894 11203765 ID=MS.gene37173.t1.exon6;Parent=MS.gene37173.t1
chr6.2 CDS 11203765 11203894 11203765 ID=cds.MS.gene37173.t1;Parent=MS.gene37173.t1
Gene Sequence

>MS.gene37173

ATGACAATTGGATCTCTTGCACCTGATGCTCTTGTAGCTAATGCAAAACCAAGGAAGAAAAAGGAAGTTGTTGATGAAAATGCACCTTTGTTACCTATGTGTCAAGAAACAGATGCTGAGTTTCATGAATTTAATGGAGCTTCATTTCCTGGGGCTGTTTTCAATTTGTCCACCACAATTATTGGTGCTGGGATCATGGGCTTGCCTGCTTGCGTCAAAAAGTTGGGAATGGTACCTGGTCTTCTTGCCATAATCCTAACAGCATTATTGAGAGAGAAGGCAATTGAGTTCATGATCAGGTTTTCGAGGGCAGGGAATCTTTCTTCCTATGGAAGTCTTATGGGAGATACCTTTGGGAAATACGGAAAAGCACTGGTAGAGATATGTGTTATAATCACTAATGTTGGTATTCTGATTGTTTACATGATCATTATTGGTGAGACCTTATTCTTAAGTCTAGCACTGAAAAATTTGTATGGCTGGACTTTTACTGTTATTACCAGTTTCTGTTTTAGTTGATTACTCATCATTTGATCTGTTTAGACCAAAACTTAAGGTTGCATGATTCAGTTTGGTTTTGTTTGTATTGTAGGTGATGTGATTTCTGGAACGACTTCAGGTGGAATTCACCATCCTGGTATCCTTGAAGGATGGTTTGGTGTTCATTGGTGGACTGGGCGCACATTTGTTGTTGTTTTTACTACACTTGCTGTGTTTGGACCTTTGGTCAGCTTAAAGCGAATTGGTGAGTGGACTTTTCTTGCATTACAGCAATTTTGGACCCTTGATCAGCTTAAAGCGATTTGGTGAGTGTACTTTTCTTGCATTACAGCAATGATGATAGATTAGATGACAATGTTAGGAAGATGACTCAAACACTGGATGGTATGGATGAAAGTTTCCATTTCATTATTTGTAAATTGAAAAAAATGGTCACAAGGTCAATAAACAATCTGTTGATTCCTTCCGTCCCAAATTGGGTGAAGAAAAATAGAGATGTCATATGGAAGAGATTTCATTCTGTTTCATCCTATTTCTTATGATCAAACAATTATAAGTTTGACAGTCTATTAGTTTGAAACTTCATTCATGTTGCAATTTGATACCAACAAATTAAAAAAAAAAAAAATGGAAATTCAAAATGCATATACTCGGTATTCAGCATTCTATTGCTTTGAAACTTGATACATGTTGCATTTTCATACCAACAAATTGAATCCTTTATGCAATGTTATGTTCAGGTTATGTGATAGGAGGATGGTAGTTGTCTAACCACTGATATAGTTAGGCTCATCCTCTAAAACCTATGTTGCATGAGTACTCTAAACTCTTGAAGTAGTTGTTGTACCTATACTGATTAATGATTATATATTTGGGGTTTATGCTTATTAGGTACAAATGGTTATGTTCCCATTACTCATCACTCAAGTACAAATAGCCTAGTATAAAATCATGTTTTCTTGCTAAGTTGTTTGGTTTGTTACCAAATGAATAAATTACTACTTCACCCCTTTTCGTATTTTTGCTCAAGTGAGTTAGAACAATAGATTTATATTATGATTATAATACTTACTTTTTTCTGTTTTTGTACCTTGGTTTTACATGTTTTATGATACACCTGTACACTGCCTGTATCAATACCGGTGCTCAACTATGTCCATGCGACACTTCTTTAACAAATTCAGCTGCATTATCTGTGGTTGATGCAGATTCGTTGAGATTCACATCTGCATTATCAATTGGATTAGCAGTTCTTTTCCTTGTCATTGCTGGTGGGATTTCAATTATCAAGATTATTAGTGGAAACATTGGGATGCCCTAACTCTTCCCTATCATTACTGATGTAGATTCTGTTTTTGATCTATTCACTGTAGTTCCTGTGCTGATGACAGCTTACATCTGTCACTACAATGGTATGAAATTGTTTGAAACCTTTGCTTAAAAACCGTTTCCCTTGTTTTAATGTTTTTACTCAGAATAGATTTGTGAAATTCTAAGTTTGTTATGGATTTCCATGAAGAAGGTTGAGGTCGTTCTGACTACTTATTCCACAACCATCACTTCATTCCATTTCCAACTAATTTGAAAAGAAACCATGCATGTCAACTTTTTATAAGCTATAATGATATTGATGCCTTTGCACGGCATTAGTCTTTTATCAAAAAATAAATAATTTTATGAGCTAAAAAAATTGAAATTCAGATTATTTTAGTTAATTTCTGGTTGTGTACCCTTAGTCGGAACTGGGAAGACTAAAATTTGTTTGCTTCATGGATTTATTGTCTGGTGGTTGCATTAATTTTTGTGTTTTTTTTATCTGCAGTTCATAACATTGATAATGAACTGGAGGATTCCTCACGGATGCGTGGGGTTGTGCGTACTTCCCTTACTCTATGCTCTTCAGTATACGTACTGACAAGCTTCTTTGGTTTCCTTCTATTTGGTGAAGGAACTCTTGATGATGTGCTTGCAAATTTTGATACTGATTTTGGAATTCCTTTTGGTTCTACTCTTAATGATGCTGTTCGTTTTAGCTATGTTGCGCATCTTGTGCTTGTATTTCCTGTAATTTTCTATGCATTGAGGTTCAACGTAGATGGTCTGATATTTTCCTCATCAAGAAGGCCTTTGGTTGTTGATAACTACAGATTTGCATCAGTTACTATTGCCCTTGTTGTCATTGTCTTCCTCGGAGCAAATTTCATACCGAACATTTGGGTTATTTTCCAATTCACTGGAGCAACAGGTGCTGTTTGTATAGCATTCATATTTCCAGCTGCAATCGCTCTAAGGTGAGTTCGGTCACTGAATTCATACAGGGATTCTTTACATGTTTTTGCATATGATTAATCAACTCAACAGTTATCATTAAGCATTTTCTTTTCCTACAGGGATCGATACAACATAGCAACTAAAACAGATACGATTCTGGCTGTCCTTATGATAGTGCTGGCAGTTTTGTCAAATGCTGTGGCTATATACAGTGATGCTTATGCTTTGATCAACAAGAACAAAGCTTAA

Protein sequence

>MS.gene37173.t1

MTIGSLAPDALVANAKPRKKKEVVDENAPLLPMCQETDAEFHEFNGASFPGAVFNLSTTIIGAGIMGLPACVKKLGMVPGLLAIILTALLREKAIEFMIRFSRAGNLSSYGSLMGDTFGKYGKALVEICVIITNVGILIVYMIIIGDVISGTTSGGIHHPGILEGWFGVHWWTGRTFVVVFTTLAVFGPLVSLKRIDSLRFTSALSIGLAVLFLVIAGGISIIKIINSVFDLFTVVPVLMTAYICHYNVHNIDNELEDSSRMRGVVRTSLTLCSSVYVLTSFFGFLLFGEGTLDDVLANFDTDFGIPFGSTLNDAVRFSYVAHLVLVFPVIFYALRFNVDGLIFSSSRRPLVVDNYRFASVTIALVVIVFLGANFIPNIWVIFQFTGATGAVCIAFIFPAAIALRDRYNIATKTDTILAVLMIVLAVLSNAVAIYSDAYALINKNKA