Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018243.t1 | RHN50300.1 | 93.3 | 460 | 31 | 0 | 1 | 460 | 1 | 460 | 7.60E-225 | 789.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018243.t1 | Q9LI61 | 64.2 | 433 | 153 | 2 | 26 | 457 | 24 | 455 | 8.9e-150 | 531.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018243.t1 | A0A396HAI1 | 93.3 | 460 | 31 | 0 | 1 | 460 | 1 | 460 | 5.5e-225 | 789.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene30955 | MS.gene018243 | PPI |
| MS.gene021114 | MS.gene018243 | PPI |
| MS.gene018243 | MS.gene86432 | PPI |
| MS.gene004045 | MS.gene018243 | PPI |
| MS.gene071169 | MS.gene018243 | PPI |
| MS.gene75991 | MS.gene018243 | PPI |
| MS.gene022024 | MS.gene018243 | PPI |
| MS.gene018234 | MS.gene018243 | PPI |
| MS.gene37165 | MS.gene018243 | PPI |
| MS.gene86947 | MS.gene018243 | PPI |
| MS.gene45489 | MS.gene018243 | PPI |
| MS.gene31156 | MS.gene018243 | PPI |
| MS.gene018235 | MS.gene018243 | PPI |
| MS.gene44762 | MS.gene018243 | PPI |
| MS.gene052122 | MS.gene018243 | PPI |
| MS.gene018243 | MS.gene37173 | PPI |
| MS.gene83556 | MS.gene018243 | PPI |
| MS.gene62008 | MS.gene018243 | PPI |
| MS.gene018243 | MS.gene41176 | PPI |
| MS.gene018243 | MS.gene37166 | PPI |
| MS.gene067430 | MS.gene018243 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018243.t1 | MTR_6g016275 | 95.000 | 460 | 23 | 0 | 1 | 460 | 1 | 460 | 0.0 | 845 |
| MS.gene018243.t1 | MTR_6g016295 | 83.964 | 449 | 71 | 1 | 11 | 458 | 8 | 456 | 0.0 | 744 |
| MS.gene018243.t1 | MTR_6g016245 | 82.889 | 450 | 76 | 1 | 11 | 459 | 6 | 455 | 0.0 | 737 |
| MS.gene018243.t1 | MTR_6g016270 | 80.952 | 462 | 85 | 2 | 1 | 459 | 1 | 462 | 0.0 | 706 |
| MS.gene018243.t1 | MTR_7g017630 | 71.983 | 464 | 124 | 3 | 1 | 459 | 1 | 463 | 0.0 | 675 |
| MS.gene018243.t1 | MTR_6g024240 | 76.296 | 270 | 9 | 2 | 191 | 460 | 38 | 252 | 9.68e-130 | 375 |
| MS.gene018243.t1 | MTR_5g083760 | 42.404 | 441 | 247 | 4 | 18 | 452 | 2 | 441 | 1.09e-125 | 372 |
| MS.gene018243.t1 | MTR_5g083770 | 43.287 | 432 | 235 | 4 | 25 | 454 | 5 | 428 | 8.45e-123 | 364 |
| MS.gene018243.t1 | MTR_3g072110 | 41.648 | 437 | 245 | 4 | 25 | 459 | 10 | 438 | 3.73e-117 | 350 |
| MS.gene018243.t1 | MTR_2g104180 | 44.076 | 422 | 225 | 6 | 43 | 460 | 73 | 487 | 1.51e-111 | 338 |
| MS.gene018243.t1 | MTR_6g016245 | 82.828 | 198 | 34 | 0 | 262 | 459 | 190 | 387 | 1.35e-110 | 332 |
| MS.gene018243.t1 | MTR_6g016245 | 79.348 | 184 | 37 | 1 | 11 | 193 | 6 | 189 | 1.56e-103 | 314 |
| MS.gene018243.t1 | MTR_1396s0010 | 57.143 | 266 | 92 | 2 | 195 | 460 | 1 | 244 | 3.73e-101 | 303 |
| MS.gene018243.t1 | MTR_1396s0010 | 61.194 | 201 | 77 | 1 | 175 | 375 | 1 | 200 | 1.65e-82 | 253 |
| MS.gene018243.t1 | MTR_8g065630 | 48.276 | 203 | 91 | 3 | 11 | 199 | 4 | 206 | 2.65e-51 | 173 |
| MS.gene018243.t1 | MTR_8g065650 | 57.407 | 162 | 68 | 1 | 35 | 195 | 41 | 202 | 9.52e-49 | 176 |
| MS.gene018243.t1 | MTR_0658s0030 | 57.724 | 123 | 51 | 1 | 338 | 460 | 1 | 122 | 3.65e-42 | 145 |
| MS.gene018243.t1 | MTR_3g072105 | 46.667 | 75 | 40 | 0 | 46 | 120 | 23 | 97 | 2.27e-16 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018243.t1 | AT3G30390 | 64.719 | 445 | 154 | 3 | 16 | 458 | 13 | 456 | 0.0 | 578 |
| MS.gene018243.t1 | AT3G30390 | 64.719 | 445 | 154 | 3 | 16 | 458 | 13 | 456 | 0.0 | 578 |
| MS.gene018243.t1 | AT3G30390 | 64.719 | 445 | 154 | 3 | 16 | 458 | 13 | 456 | 0.0 | 578 |
| MS.gene018243.t1 | AT5G38820 | 63.265 | 441 | 158 | 3 | 21 | 458 | 11 | 450 | 0.0 | 569 |
| MS.gene018243.t1 | AT5G38820 | 63.265 | 441 | 158 | 3 | 21 | 458 | 11 | 450 | 0.0 | 569 |
| MS.gene018243.t1 | AT5G38820 | 63.265 | 441 | 158 | 3 | 21 | 458 | 16 | 455 | 0.0 | 568 |
| MS.gene018243.t1 | AT3G56200 | 42.890 | 429 | 238 | 4 | 28 | 454 | 9 | 432 | 1.94e-114 | 343 |
| MS.gene018243.t1 | AT2G40420 | 44.884 | 430 | 232 | 5 | 25 | 452 | 6 | 432 | 1.90e-112 | 338 |
| MS.gene018243.t1 | AT1G80510 | 43.405 | 417 | 226 | 5 | 43 | 454 | 73 | 484 | 2.65e-99 | 306 |
| MS.gene018243.t1 | AT2G41190 | 22.222 | 468 | 313 | 11 | 14 | 459 | 98 | 536 | 3.12e-11 | 65.9 |
Find 94 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTATTGGTGCTGGAATTA+TGG | 0.156418 | 6.3:+11363366 | MS.gene018243:CDS |
| AATTTATCAACCACAATTAT+TGG | 0.168967 | 6.3:+11363352 | MS.gene018243:CDS |
| TTCTTTGGGTTCCTACTATT+TGG | 0.194546 | 6.3:+11364995 | MS.gene018243:CDS |
| ACATCACTTTCTTGTGTCTT+AGG | 0.206909 | 6.3:-11363283 | None:intergenic |
| TTCTTCCTATGGAAGTCTTA+TGG | 0.214598 | 6.3:+11363510 | MS.gene018243:CDS |
| TACTTACTGACAAGCTTCTT+TGG | 0.226981 | 6.3:+11364980 | MS.gene018243:CDS |
| GTTAAGTTTGATGAATTTAA+TGG | 0.259661 | 6.3:+11363304 | MS.gene018243:CDS |
| TTTATAGGTGATGTGATTTC+CGG | 0.262265 | 6.3:+11363711 | MS.gene018243:intron |
| CAAATTTCATACCTAACATT+TGG | 0.283528 | 6.3:+11365269 | MS.gene018243:CDS |
| TCTTCCTATGGAAGTCTTAT+GGG | 0.297191 | 6.3:+11363511 | MS.gene018243:CDS |
| TCCAAGATCAGTATCAAAAT+TGG | 0.300073 | 6.3:-11365044 | None:intergenic |
| AGCCAGAATCGTATCTGTTT+TGG | 0.319124 | 6.3:-11365485 | None:intergenic |
| ATTTGCTGTGGTTGCACCTT+TGG | 0.320327 | 6.3:+11363830 | MS.gene018243:CDS |
| ATTATTGGTGCTGGAATTAT+GGG | 0.320496 | 6.3:+11363367 | MS.gene018243:CDS |
| CTCAATGCATAGAAAATTAC+AGG | 0.336695 | 6.3:-11365136 | None:intergenic |
| TTCCAGCTGCAATTGCTCTA+AGG | 0.340826 | 6.3:+11365344 | MS.gene018243:CDS |
| ACTTACTGACAAGCTTCTTT+GGG | 0.347899 | 6.3:+11364981 | MS.gene018243:CDS |
| AGTAATGACCGGGAAGAGTC+TGG | 0.349168 | 6.3:-11364327 | None:intergenic |
| AGTCTTATGGGAGATGCCTT+TGG | 0.349887 | 6.3:+11363523 | MS.gene018243:CDS |
| AGTCAATTGATTTCATAATC+AGG | 0.357461 | 6.3:+11363467 | MS.gene018243:CDS |
| TTTGGTGTCCATTGGTGGAC+TGG | 0.358328 | 6.3:+11363780 | MS.gene018243:CDS |
| TGGGATGCCCAGACTCTTCC+CGG | 0.371056 | 6.3:+11364319 | MS.gene018243:CDS |
| AATTCCACTTGAAGTTGTTC+CGG | 0.372859 | 6.3:-11363730 | None:intergenic |
| AAATTTCATACCTAACATTT+GGG | 0.375847 | 6.3:+11365270 | MS.gene018243:CDS |
| CACCTGTTGCTCCAGTGAAT+TGG | 0.376723 | 6.3:-11365300 | None:intergenic |
| TTCCAATTCACTGGAGCAAC+AGG | 0.378767 | 6.3:+11365298 | MS.gene018243:CDS |
| TTCCTCATCAAGAAGGCCTT+TGG | 0.387053 | 6.3:+11365183 | MS.gene018243:CDS |
| TTCACGTCTGCATTATCAAT+TGG | 0.388144 | 6.3:+11364230 | MS.gene018243:CDS |
| GTCTTATGGGAGATGCCTTT+GGG | 0.388574 | 6.3:+11363524 | MS.gene018243:CDS |
| TGGAAAATAACCCAAATGTT+AGG | 0.406406 | 6.3:-11365280 | None:intergenic |
| TCAACCACAATTATTGGTGC+TGG | 0.417512 | 6.3:+11363358 | MS.gene018243:CDS |
| TTGGTGTCCATTGGTGGACT+GGG | 0.426711 | 6.3:+11363781 | MS.gene018243:CDS |
| CTTGTTGTCATTATCTTCCT+CGG | 0.427841 | 6.3:+11365244 | MS.gene018243:CDS |
| TCAATTATCAAGATTATTAG+TGG | 0.428815 | 6.3:+11364290 | MS.gene018243:CDS |
| AGATTATTAGTGGCGGCATT+GGG | 0.432282 | 6.3:+11364300 | MS.gene018243:CDS |
| GCAGGGAAACTTTCTTCCTA+TGG | 0.440225 | 6.3:+11363499 | MS.gene018243:CDS |
| AAGATTATTAGTGGCGGCAT+TGG | 0.440911 | 6.3:+11364299 | MS.gene018243:CDS |
| ACTGATCTTGGAATTCCCTT+CGG | 0.448477 | 6.3:+11365055 | MS.gene018243:CDS |
| AGATCCCTCCGGCAATGATA+AGG | 0.461338 | 6.3:-11364268 | None:intergenic |
| GGTGTCCTTGAAGGATGGTT+TGG | 0.463689 | 6.3:+11363762 | MS.gene018243:CDS |
| GGAGATGCCTTTGGGAAATA+CGG | 0.464058 | 6.3:+11363532 | MS.gene018243:CDS |
| GGCTGTCTTTATGATAGTGC+TGG | 0.470252 | 6.3:+11365504 | MS.gene018243:CDS |
| TTGGTCAGCTTTAAGCGGAT+TGG | 0.477571 | 6.3:+11363849 | MS.gene018243:CDS |
| AAGGATGGTTTGGTGTCCAT+TGG | 0.478302 | 6.3:+11363772 | MS.gene018243:CDS |
| GAACTCCTTCACCAAATAGT+AGG | 0.481003 | 6.3:-11365006 | None:intergenic |
| CACCTTAGAGCAATTGCAGC+TGG | 0.482017 | 6.3:-11365346 | None:intergenic |
| CACCATGCTGGTGTCCTTGA+AGG | 0.483204 | 6.3:+11363753 | MS.gene018243:CDS |
| GATGGTTTGGTGTCCATTGG+TGG | 0.485337 | 6.3:+11363775 | MS.gene018243:CDS |
| TCAAAGCATAGAGAATGAAC+TGG | 0.495561 | 6.3:+11364898 | MS.gene018243:CDS |
| GAAATACGGAAAAGCGTCGT+TGG | 0.497510 | 6.3:+11363546 | MS.gene018243:CDS |
| AACCAAAACAGATACGATTC+TGG | 0.498667 | 6.3:+11365483 | MS.gene018243:CDS |
| GCATTGAGGTTCAACGTAGA+TGG | 0.498672 | 6.3:+11365151 | MS.gene018243:CDS |
| GGGTTCCTACTATTTGGTGA+AGG | 0.499413 | 6.3:+11365001 | MS.gene018243:CDS |
| ATCATGTACATGATCATTGT+TGG | 0.510416 | 6.3:+11363601 | MS.gene018243:CDS |
| GGACACCAAACCATCCTTCA+AGG | 0.514169 | 6.3:-11363767 | None:intergenic |
| ATCATTGAGCGCAGAACCGA+AGG | 0.528664 | 6.3:-11365071 | None:intergenic |
| TACTTTCGCAACATTTGCTG+TGG | 0.536955 | 6.3:+11363818 | MS.gene018243:CDS |
| ACACCGACGAGCATAGAGTA+AGG | 0.537017 | 6.3:-11364958 | None:intergenic |
| CACCTTTGGTCAGCTTTAAG+CGG | 0.542192 | 6.3:+11363844 | MS.gene018243:CDS |
| GAAGCTGCATCAGTAATGAC+CGG | 0.543219 | 6.3:-11364338 | None:intergenic |
| TCTTGTGTCTTAGGTAACAA+AGG | 0.569279 | 6.3:-11363274 | None:intergenic |
| AACCAAAGGCCTTCTTGATG+AGG | 0.573378 | 6.3:-11365185 | None:intergenic |
| CGAGGAAGATAATGACAACA+AGG | 0.577653 | 6.3:-11365243 | None:intergenic |
| ATGTACGCCCAGTCCACCAA+TGG | 0.578995 | 6.3:-11363788 | None:intergenic |
| TTCCCTTACTCTATGCTCGT+CGG | 0.581558 | 6.3:+11364955 | MS.gene018243:CDS |
| ATTTCCGGAACAACTTCAAG+TGG | 0.582092 | 6.3:+11363726 | MS.gene018243:CDS |
| AATTCCAGCACCAATAATTG+TGG | 0.583355 | 6.3:-11363362 | None:intergenic |
| GTAATGACCGGGAAGAGTCT+GGG | 0.583465 | 6.3:-11364326 | None:intergenic |
| ATGCTGGTGTCCTTGAAGGA+TGG | 0.583854 | 6.3:+11363757 | MS.gene018243:CDS |
| TCAAGTGGAATTCACCATGC+TGG | 0.586016 | 6.3:+11363741 | MS.gene018243:CDS |
| ATCTCCCATAAGACTTCCAT+AGG | 0.587673 | 6.3:-11363515 | None:intergenic |
| CTTGATAATTGAGATCCCTC+CGG | 0.592592 | 6.3:-11364279 | None:intergenic |
| GAGGATTCCTCACGGATACG+TGG | 0.599496 | 6.3:+11364920 | MS.gene018243:CDS |
| AGGATTCCTCACGGATACGT+GGG | 0.602701 | 6.3:+11364921 | MS.gene018243:CDS |
| ACGTAGGCTGTCATCAGCAC+AGG | 0.604612 | 6.3:-11364386 | None:intergenic |
| CTGAAGTTATCAACAACCAA+AGG | 0.615882 | 6.3:-11365199 | None:intergenic |
| CACCGACGAGCATAGAGTAA+GGG | 0.621195 | 6.3:-11364957 | None:intergenic |
| AAGCTGCATCAGTAATGACC+GGG | 0.624108 | 6.3:-11364337 | None:intergenic |
| ATTATCAAGATTATTAGTGG+CGG | 0.630417 | 6.3:+11364293 | MS.gene018243:CDS |
| ATCCTTCAAGGACACCAGCA+TGG | 0.632142 | 6.3:-11363755 | None:intergenic |
| TGAAAAGTGAAAATGACTAG+TGG | 0.635089 | 6.3:+11363184 | None:intergenic |
| ATCCGCTTAAAGCTGACCAA+AGG | 0.647778 | 6.3:-11363846 | None:intergenic |
| AAGCATAGAGAATGAACTGG+AGG | 0.650959 | 6.3:+11364901 | MS.gene018243:CDS |
| ATGAACTGGAGGATTCCTCA+CGG | 0.655141 | 6.3:+11364912 | MS.gene018243:CDS |
| GGATTCCTCACGGATACGTG+GGG | 0.661899 | 6.3:+11364922 | MS.gene018243:CDS |
| TGTCTTTATGATAGTGCTGG+CGG | 0.665069 | 6.3:+11365507 | MS.gene018243:CDS |
| GTACATGATCAGACTACCGA+TGG | 0.672010 | 6.3:-11363587 | None:intergenic |
| TCATTGAGCGCAGAACCGAA+GGG | 0.672577 | 6.3:-11365070 | None:intergenic |
| GAGGAAGATAATGACAACAA+GGG | 0.679413 | 6.3:-11365242 | None:intergenic |
| TAGGTATGAAATTTGCTCCG+AGG | 0.690029 | 6.3:-11365261 | None:intergenic |
| AGAACTATGACAATAAGACC+AGG | 0.702162 | 6.3:-11363424 | None:intergenic |
| GCCTACGTATGTCACTACAA+TGG | 0.703299 | 6.3:+11364401 | MS.gene018243:CDS |
| CACAACCCCACGTATCCGTG+AGG | 0.715105 | 6.3:-11364927 | None:intergenic |
| ACCATTGTAGTGACATACGT+AGG | 0.770551 | 6.3:-11364402 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGATTTTCAGATTATTT+TGG | + | chr6.3:11364598-11364617 | MS.gene018243:intron | 15.0% |
| !!! | TTGTTTTTGTTTGTATTTAT+AGG | + | chr6.3:11363696-11363715 | MS.gene018243:intron | 15.0% |
| !! | AAATTTCATACCTAACATTT+GGG | + | chr6.3:11365270-11365289 | MS.gene018243:CDS | 20.0% |
| !! | AATTTATCAACCACAATTAT+TGG | + | chr6.3:11363352-11363371 | MS.gene018243:CDS | 20.0% |
| !! | AGACTTGTATAATTATAAGT+TGG | + | chr6.3:11364472-11364491 | MS.gene018243:intron | 20.0% |
| !! | CGTTTGTAAATTAAGAAAAA+TGG | + | chr6.3:11363991-11364010 | MS.gene018243:intron | 20.0% |
| !! | GTTAAGTTTGATGAATTTAA+TGG | + | chr6.3:11363304-11363323 | MS.gene018243:CDS | 20.0% |
| !! | TAATAAAAACATTAAGAGAG+AGG | - | chr6.3:11364444-11364463 | None:intergenic | 20.0% |
| !! | TATCATTAGAGAAGAATTTA+AGG | + | chr6.3:11363658-11363677 | MS.gene018243:intron | 20.0% |
| !! | TCAATTATCAAGATTATTAG+TGG | + | chr6.3:11364290-11364309 | MS.gene018243:CDS | 20.0% |
| !! | TGCTTCATAGATTTATTATA+TGG | + | chr6.3:11364845-11364864 | MS.gene018243:intron | 20.0% |
| !! | TTAATTTACAAACGATGAAA+TGG | - | chr6.3:11363985-11364004 | None:intergenic | 20.0% |
| !!! | GATTAATAGTATACATTTTG+TGG | + | chr6.3:11364714-11364733 | MS.gene018243:intron | 20.0% |
| !!! | GTATAATTATAAGTTGGTTA+TGG | + | chr6.3:11364478-11364497 | MS.gene018243:intron | 20.0% |
| !!! | TTACAGATTAGTTAATCTTA+TGG | - | chr6.3:11364543-11364562 | None:intergenic | 20.0% |
| ! | AAAGTCTAGACTTAAGAATA+TGG | - | chr6.3:11363632-11363651 | None:intergenic | 25.0% |
| ! | AAGATCAATAAACAACTAGT+TGG | + | chr6.3:11364019-11364038 | MS.gene018243:intron | 25.0% |
| ! | ATTATCAAGATTATTAGTGG+CGG | + | chr6.3:11364293-11364312 | MS.gene018243:CDS | 25.0% |
| ! | ATTTGGTACACATGATTATT+TGG | + | chr6.3:11364063-11364082 | MS.gene018243:intron | 25.0% |
| ! | CAAATTTCATACCTAACATT+TGG | + | chr6.3:11365269-11365288 | MS.gene018243:CDS | 25.0% |
| !! | AGTCAATTGATTTCATAATC+AGG | + | chr6.3:11363467-11363486 | MS.gene018243:CDS | 25.0% |
| !! | ATTTCATAATCAGGTTTTCT+AGG | + | chr6.3:11363476-11363495 | MS.gene018243:CDS | 25.0% |
| !! | TAGTATACATTTTGTGGTTT+AGG | + | chr6.3:11364720-11364739 | MS.gene018243:intron | 25.0% |
| !! | TTTCATAATCAGGTTTTCTA+GGG | + | chr6.3:11363477-11363496 | MS.gene018243:CDS | 25.0% |
| !!! | AGATTATTTTGGTTAATTCC+TGG | + | chr6.3:11364609-11364628 | MS.gene018243:intron | 25.0% |
| !!! | AGGAAGTGTTTTTATATACT+TGG | + | chr6.3:11364664-11364683 | MS.gene018243:intron | 25.0% |
| !!! | ATATGTGTTTTAAGTACCAT+CGG | + | chr6.3:11363571-11363590 | MS.gene018243:CDS | 25.0% |
| AAATCTATGAAGCAAACAAG+TGG | - | chr6.3:11364839-11364858 | None:intergenic | 30.0% | |
| ATAGATTAGACAACCATGTT+AGG | + | chr6.3:11363920-11363939 | MS.gene018243:intron | 30.0% | |
| ATCATGTACATGATCATTGT+TGG | + | chr6.3:11363601-11363620 | MS.gene018243:CDS | 30.0% | |
| ATGTGTGAAAAAGTTAGGAA+TGG | + | chr6.3:11363399-11363418 | MS.gene018243:CDS | 30.0% | |
| CATGGTTATTGATGCTTATT+TGG | + | chr6.3:11364046-11364065 | MS.gene018243:intron | 30.0% | |
| CTCAATGCATAGAAAATTAC+AGG | - | chr6.3:11365139-11365158 | None:intergenic | 30.0% | |
| GATTTGCATGAAGAAGATTA+AGG | + | chr6.3:11364500-11364519 | MS.gene018243:intron | 30.0% | |
| TATACTATTAATCGTCGTGT+TGG | - | chr6.3:11364707-11364726 | None:intergenic | 30.0% | |
| TCCAAGATCAGTATCAAAAT+TGG | - | chr6.3:11365047-11365066 | None:intergenic | 30.0% | |
| TGGAAAATAACCCAAATGTT+AGG | - | chr6.3:11365283-11365302 | None:intergenic | 30.0% | |
| TTTATAGGTGATGTGATTTC+CGG | + | chr6.3:11363711-11363730 | MS.gene018243:intron | 30.0% | |
| ! | AGTTGTTTCATTTACCGAAA+CGG | + | chr6.3:11363895-11363914 | MS.gene018243:intron | 30.0% |
| ! | CTGTAATTTTCTATGCATTG+AGG | + | chr6.3:11365137-11365156 | MS.gene018243:CDS | 30.0% |
| ! | TGATATTTTCCTCATCAAGA+AGG | + | chr6.3:11365176-11365195 | MS.gene018243:CDS | 30.0% |
| ! | TTTAATGGAGCTTCATTTTC+TGG | + | chr6.3:11363319-11363338 | MS.gene018243:CDS | 30.0% |
| ! | TTTTTCACTCGAGTACAAAT+TGG | + | chr6.3:11364098-11364117 | MS.gene018243:intron | 30.0% |
| !! | AATTATTGGTGCTGGAATTA+TGG | + | chr6.3:11363366-11363385 | MS.gene018243:CDS | 30.0% |
| !! | ATTATTGGTGCTGGAATTAT+GGG | + | chr6.3:11363367-11363386 | MS.gene018243:CDS | 30.0% |
| !! | TTTGTCATAGAAGTGTTACA+TGG | - | chr6.3:11364170-11364189 | None:intergenic | 30.0% |
| !!! | AGTTTTGTTGCGAAGTTATT+TGG | + | chr6.3:11364137-11364156 | MS.gene018243:intron | 30.0% |
| !!! | GATTTTTTCTTCTCTGCATT+AGG | - | chr6.3:11363220-11363239 | None:intergenic | 30.0% |
| !!! | TCCTAACTTTTTCACACATA+CGG | - | chr6.3:11363398-11363417 | None:intergenic | 30.0% |
| AACCAAAACAGATACGATTC+TGG | + | chr6.3:11365483-11365502 | MS.gene018243:CDS | 35.0% | |
| AATTCCACTTGAAGTTGTTC+CGG | - | chr6.3:11363733-11363752 | None:intergenic | 35.0% | |
| AATTCCAGCACCAATAATTG+TGG | - | chr6.3:11363365-11363384 | None:intergenic | 35.0% | |
| ACATCACTTTCTTGTGTCTT+AGG | - | chr6.3:11363286-11363305 | None:intergenic | 35.0% | |
| ACTTACTGACAAGCTTCTTT+GGG | + | chr6.3:11364981-11365000 | MS.gene018243:CDS | 35.0% | |
| AGAACTATGACAATAAGACC+AGG | - | chr6.3:11363427-11363446 | None:intergenic | 35.0% | |
| CACCACGTACTAATAAACAT+CGG | + | chr6.3:11364784-11364803 | MS.gene018243:intron | 35.0% | |
| CGAGTGAAAAAAGTGAGTAT+TGG | - | chr6.3:11364089-11364108 | None:intergenic | 35.0% | |
| CTGAAGTTATCAACAACCAA+AGG | - | chr6.3:11365202-11365221 | None:intergenic | 35.0% | |
| GAGGAAGATAATGACAACAA+GGG | - | chr6.3:11365245-11365264 | None:intergenic | 35.0% | |
| GTGCATCATTAGTCAAAACA+CGG | + | chr6.3:11364634-11364653 | MS.gene018243:intron | 35.0% | |
| TACTTACTGACAAGCTTCTT+TGG | + | chr6.3:11364980-11364999 | MS.gene018243:CDS | 35.0% | |
| TCAAAGCATAGAGAATGAAC+TGG | + | chr6.3:11364898-11364917 | MS.gene018243:CDS | 35.0% | |
| TCGTAAAAAATTGACAGACG+TGG | - | chr6.3:11364571-11364590 | None:intergenic | 35.0% | |
| TCTTGTGTCTTAGGTAACAA+AGG | - | chr6.3:11363277-11363296 | None:intergenic | 35.0% | |
| TGTCTAATCTATAGCCGTTT+CGG | - | chr6.3:11363912-11363931 | None:intergenic | 35.0% | |
| TTCACGTCTGCATTATCAAT+TGG | + | chr6.3:11364230-11364249 | MS.gene018243:CDS | 35.0% | |
| TTCTTCCTATGGAAGTCTTA+TGG | + | chr6.3:11363510-11363529 | MS.gene018243:CDS | 35.0% | |
| TTTGAGTCATCTTCCTAACA+TGG | - | chr6.3:11363936-11363955 | None:intergenic | 35.0% | |
| ! | AAACAACTAGTTGGTACACA+TGG | + | chr6.3:11364028-11364047 | MS.gene018243:intron | 35.0% |
| ! | AAGCATTTTCTTTTCCGACA+GGG | + | chr6.3:11365444-11365463 | MS.gene018243:intron | 35.0% |
| ! | CTTGTTGTCATTATCTTCCT+CGG | + | chr6.3:11365244-11365263 | MS.gene018243:CDS | 35.0% |
| ! | GATTGGTGAGTGATTTTTCT+TGG | + | chr6.3:11363866-11363885 | MS.gene018243:intron | 35.0% |
| ! | GTTCTTTTCCTTATCATTGC+CGG | + | chr6.3:11364260-11364279 | MS.gene018243:CDS | 35.0% |
| ! | TAAGCATTTTCTTTTCCGAC+AGG | + | chr6.3:11365443-11365462 | MS.gene018243:intron | 35.0% |
| ! | TCTTCCTATGGAAGTCTTAT+GGG | + | chr6.3:11363511-11363530 | MS.gene018243:CDS | 35.0% |
| ! | TTCTTTGGGTTCCTACTATT+TGG | + | chr6.3:11364995-11365014 | MS.gene018243:CDS | 35.0% |
| !! | CAATTGCTCTAAGGTGAATT+CGG | + | chr6.3:11365353-11365372 | MS.gene018243:intron | 35.0% |
| !! | GCCAATTTTGATACTGATCT+TGG | + | chr6.3:11365043-11365062 | MS.gene018243:CDS | 35.0% |
| !! | TGGGTTATTTTCCAATTCAC+TGG | + | chr6.3:11365289-11365308 | MS.gene018243:CDS | 35.0% |
| !!! | CCTAACTTTTTCACACATAC+GGG | - | chr6.3:11363397-11363416 | None:intergenic | 35.0% |
| AAAAAGTTAGGAATGGTGCC+TGG | + | chr6.3:11363406-11363425 | MS.gene018243:CDS | 40.0% | |
| AAGATTATTAGTGGCGGCAT+TGG | + | chr6.3:11364299-11364318 | MS.gene018243:CDS | 40.0% | |
| AAGCATAGAGAATGAACTGG+AGG | + | chr6.3:11364901-11364920 | MS.gene018243:CDS | 40.0% | |
| ACCATTGTAGTGACATACGT+AGG | - | chr6.3:11364405-11364424 | None:intergenic | 40.0% | |
| ACTGATCTTGGAATTCCCTT+CGG | + | chr6.3:11365055-11365074 | MS.gene018243:CDS | 40.0% | |
| AGATTATTAGTGGCGGCATT+GGG | + | chr6.3:11364300-11364319 | MS.gene018243:CDS | 40.0% | |
| AGTCAAAACACGGAACACTA+AGG | + | chr6.3:11364644-11364663 | MS.gene018243:intron | 40.0% | |
| ATCTCCCATAAGACTTCCAT+AGG | - | chr6.3:11363518-11363537 | None:intergenic | 40.0% | |
| ATTTCCGGAACAACTTCAAG+TGG | + | chr6.3:11363726-11363745 | MS.gene018243:CDS | 40.0% | |
| CCCGTATGTGTGAAAAAGTT+AGG | + | chr6.3:11363394-11363413 | MS.gene018243:CDS | 40.0% | |
| CGAGGAAGATAATGACAACA+AGG | - | chr6.3:11365246-11365265 | None:intergenic | 40.0% | |
| CGATGTTTATTAGTACGTGG+TGG | - | chr6.3:11364786-11364805 | None:intergenic | 40.0% | |
| GAACTCCTTCACCAAATAGT+AGG | - | chr6.3:11365009-11365028 | None:intergenic | 40.0% | |
| TCAACCACAATTATTGGTGC+TGG | + | chr6.3:11363358-11363377 | MS.gene018243:CDS | 40.0% | |
| TGCCGATGTTTATTAGTACG+TGG | - | chr6.3:11364789-11364808 | None:intergenic | 40.0% | |
| TTAGGAAGATGACTCAAACG+CGG | + | chr6.3:11363938-11363957 | MS.gene018243:intron | 40.0% | |
| TTGACTAATGATGCACAACC+AGG | - | chr6.3:11364630-11364649 | None:intergenic | 40.0% | |
| ! | AGCCAGAATCGTATCTGTTT+TGG | - | chr6.3:11365488-11365507 | None:intergenic | 40.0% |
| ! | CTTGATAATTGAGATCCCTC+CGG | - | chr6.3:11364282-11364301 | None:intergenic | 40.0% |
| ! | TACATTTTGTGGTTTAGGCC+TGG | + | chr6.3:11364725-11364744 | MS.gene018243:intron | 40.0% |
| ! | TACTTTCGCAACATTTGCTG+TGG | + | chr6.3:11363818-11363837 | MS.gene018243:CDS | 40.0% |
| ! | TAGGTATGAAATTTGCTCCG+AGG | - | chr6.3:11365264-11365283 | None:intergenic | 40.0% |
| ! | TATGTTGTATCGATCCCTGT+CGG | - | chr6.3:11365461-11365480 | None:intergenic | 40.0% |
| ! | TGTCTTTATGATAGTGCTGG+CGG | + | chr6.3:11365507-11365526 | MS.gene018243:CDS | 40.0% |
| ! | TTTTCCTTATCATTGCCGGA+GGG | + | chr6.3:11364264-11364283 | MS.gene018243:CDS | 40.0% |
| !!! | ATAATCAGGTTTTCTAGGGC+AGG | + | chr6.3:11363481-11363500 | MS.gene018243:CDS | 40.0% |
| !!! | TAATCAGGTTTTCTAGGGCA+GGG | + | chr6.3:11363482-11363501 | MS.gene018243:CDS | 40.0% |
| AACCAAAGGCCTTCTTGATG+AGG | - | chr6.3:11365188-11365207 | None:intergenic | 45.0% | |
| AAGCTGCATCAGTAATGACC+GGG | - | chr6.3:11364340-11364359 | None:intergenic | 45.0% | |
| AGATGACTCAAACGCGGTAA+TGG | + | chr6.3:11363944-11363963 | MS.gene018243:intron | 45.0% | |
| ATCCGCTTAAAGCTGACCAA+AGG | - | chr6.3:11363849-11363868 | None:intergenic | 45.0% | |
| ATGAACTGGAGGATTCCTCA+CGG | + | chr6.3:11364912-11364931 | MS.gene018243:CDS | 45.0% | |
| GAAGCTGCATCAGTAATGAC+CGG | - | chr6.3:11364341-11364360 | None:intergenic | 45.0% | |
| GCAGGGAAACTTTCTTCCTA+TGG | + | chr6.3:11363499-11363518 | MS.gene018243:CDS | 45.0% | |
| GCATTGAGGTTCAACGTAGA+TGG | + | chr6.3:11365151-11365170 | MS.gene018243:CDS | 45.0% | |
| GCCTACGTATGTCACTACAA+TGG | + | chr6.3:11364401-11364420 | MS.gene018243:CDS | 45.0% | |
| GTACATGATCAGACTACCGA+TGG | - | chr6.3:11363590-11363609 | None:intergenic | 45.0% | |
| GTCTTATGGGAGATGCCTTT+GGG | + | chr6.3:11363524-11363543 | MS.gene018243:CDS | 45.0% | |
| TACAACCACATCAAGCAACC+AGG | - | chr6.3:11364746-11364765 | None:intergenic | 45.0% | |
| TCAAGTGGAATTCACCATGC+TGG | + | chr6.3:11363741-11363760 | MS.gene018243:CDS | 45.0% | |
| TTCCAATTCACTGGAGCAAC+AGG | + | chr6.3:11365298-11365317 | MS.gene018243:CDS | 45.0% | |
| TTCCAGCTGCAATTGCTCTA+AGG | + | chr6.3:11365344-11365363 | MS.gene018243:CDS | 45.0% | |
| TTCCCTTACTCTATGCTCGT+CGG | + | chr6.3:11364955-11364974 | MS.gene018243:CDS | 45.0% | |
| TTCCTCATCAAGAAGGCCTT+TGG | + | chr6.3:11365183-11365202 | MS.gene018243:CDS | 45.0% | |
| ! | ACTCAAACGCGGTAATGGTA+TGG | + | chr6.3:11363949-11363968 | MS.gene018243:intron | 45.0% |
| ! | AGTCTTATGGGAGATGCCTT+TGG | + | chr6.3:11363523-11363542 | MS.gene018243:CDS | 45.0% |
| ! | CGCTTTTCCGTATTTCCCAA+AGG | - | chr6.3:11363542-11363561 | None:intergenic | 45.0% |
| ! | CTTTTCCTTATCATTGCCGG+AGG | + | chr6.3:11364263-11364282 | MS.gene018243:CDS | 45.0% |
| ! | GGAGATGCCTTTGGGAAATA+CGG | + | chr6.3:11363532-11363551 | MS.gene018243:CDS | 45.0% |
| ! | GGCTGTCTTTATGATAGTGC+TGG | + | chr6.3:11365504-11365523 | MS.gene018243:CDS | 45.0% |
| ! | GGGTTCCTACTATTTGGTGA+AGG | + | chr6.3:11365001-11365020 | MS.gene018243:CDS | 45.0% |
| !! | AAGGATGGTTTGGTGTCCAT+TGG | + | chr6.3:11363772-11363791 | MS.gene018243:CDS | 45.0% |
| !! | ATTTGCTGTGGTTGCACCTT+TGG | + | chr6.3:11363830-11363849 | MS.gene018243:CDS | 45.0% |
| !! | CACCTTTGGTCAGCTTTAAG+CGG | + | chr6.3:11363844-11363863 | MS.gene018243:CDS | 45.0% |
| !! | GAAATACGGAAAAGCGTCGT+TGG | + | chr6.3:11363546-11363565 | MS.gene018243:CDS | 45.0% |
| !! | TTGGTCAGCTTTAAGCGGAT+TGG | + | chr6.3:11363849-11363868 | MS.gene018243:CDS | 45.0% |
| ACACCGACGAGCATAGAGTA+AGG | - | chr6.3:11364961-11364980 | None:intergenic | 50.0% | |
| AGATCCCTCCGGCAATGATA+AGG | - | chr6.3:11364271-11364290 | None:intergenic | 50.0% | |
| AGGATTCCTCACGGATACGT+GGG | + | chr6.3:11364921-11364940 | MS.gene018243:CDS | 50.0% | |
| AGTAATGACCGGGAAGAGTC+TGG | - | chr6.3:11364330-11364349 | None:intergenic | 50.0% | |
| ATCATTGAGCGCAGAACCGA+AGG | - | chr6.3:11365074-11365093 | None:intergenic | 50.0% | |
| ATCCTTCAAGGACACCAGCA+TGG | - | chr6.3:11363758-11363777 | None:intergenic | 50.0% | |
| ATGCTGGTGTCCTTGAAGGA+TGG | + | chr6.3:11363757-11363776 | MS.gene018243:CDS | 50.0% | |
| CACCGACGAGCATAGAGTAA+GGG | - | chr6.3:11364960-11364979 | None:intergenic | 50.0% | |
| CACCTGTTGCTCCAGTGAAT+TGG | - | chr6.3:11365303-11365322 | None:intergenic | 50.0% | |
| CACCTTAGAGCAATTGCAGC+TGG | - | chr6.3:11365349-11365368 | None:intergenic | 50.0% | |
| GGACACCAAACCATCCTTCA+AGG | - | chr6.3:11363770-11363789 | None:intergenic | 50.0% | |
| GGTGTCCTTGAAGGATGGTT+TGG | + | chr6.3:11363762-11363781 | MS.gene018243:CDS | 50.0% | |
| GTAATGACCGGGAAGAGTCT+GGG | - | chr6.3:11364329-11364348 | None:intergenic | 50.0% | |
| TCATTGAGCGCAGAACCGAA+GGG | - | chr6.3:11365073-11365092 | None:intergenic | 50.0% | |
| TTAGGCCTGGTTGCTTGATG+TGG | + | chr6.3:11364738-11364757 | MS.gene018243:intron | 50.0% | |
| ! | TACGTGGTGGAATCAGCTTG+TGG | - | chr6.3:11364773-11364792 | None:intergenic | 50.0% |
| !! | GATGGTTTGGTGTCCATTGG+TGG | + | chr6.3:11363775-11363794 | MS.gene018243:CDS | 50.0% |
| !! | GGCGGTTTTGTCAAATGCTG+TGG | + | chr6.3:11365525-11365544 | MS.gene018243:CDS | 50.0% |
| !! | TTGGTGTCCATTGGTGGACT+GGG | + | chr6.3:11363781-11363800 | MS.gene018243:CDS | 50.0% |
| !! | TTTGGTGTCCATTGGTGGAC+TGG | + | chr6.3:11363780-11363799 | MS.gene018243:CDS | 50.0% |
| ACGTAGGCTGTCATCAGCAC+AGG | - | chr6.3:11364389-11364408 | None:intergenic | 55.0% | |
| ATGTACGCCCAGTCCACCAA+TGG | - | chr6.3:11363791-11363810 | None:intergenic | 55.0% | |
| CACCATGCTGGTGTCCTTGA+AGG | + | chr6.3:11363753-11363772 | MS.gene018243:CDS | 55.0% | |
| GAGGATTCCTCACGGATACG+TGG | + | chr6.3:11364920-11364939 | MS.gene018243:CDS | 55.0% | |
| GGATTCCTCACGGATACGTG+GGG | + | chr6.3:11364922-11364941 | MS.gene018243:CDS | 55.0% | |
| CACAACCCCACGTATCCGTG+AGG | - | chr6.3:11364930-11364949 | None:intergenic | 60.0% | |
| TGGGATGCCCAGACTCTTCC+CGG | + | chr6.3:11364319-11364338 | MS.gene018243:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 11363196 | 11365594 | 11363196 | ID=MS.gene018243 |
| chr6.3 | mRNA | 11363196 | 11365594 | 11363196 | ID=MS.gene018243.t1;Parent=MS.gene018243 |
| chr6.3 | exon | 11363196 | 11363622 | 11363196 | ID=MS.gene018243.t1.exon1;Parent=MS.gene018243.t1 |
| chr6.3 | CDS | 11363196 | 11363622 | 11363196 | ID=cds.MS.gene018243.t1;Parent=MS.gene018243.t1 |
| chr6.3 | exon | 11363718 | 11363870 | 11363718 | ID=MS.gene018243.t1.exon2;Parent=MS.gene018243.t1 |
| chr6.3 | CDS | 11363718 | 11363870 | 11363718 | ID=cds.MS.gene018243.t1;Parent=MS.gene018243.t1 |
| chr6.3 | exon | 11364219 | 11364422 | 11364219 | ID=MS.gene018243.t1.exon3;Parent=MS.gene018243.t1 |
| chr6.3 | CDS | 11364219 | 11364422 | 11364219 | ID=cds.MS.gene018243.t1;Parent=MS.gene018243.t1 |
| chr6.3 | exon | 11364897 | 11365365 | 11364897 | ID=MS.gene018243.t1.exon4;Parent=MS.gene018243.t1 |
| chr6.3 | CDS | 11364897 | 11365365 | 11364897 | ID=cds.MS.gene018243.t1;Parent=MS.gene018243.t1 |
| chr6.3 | exon | 11365465 | 11365594 | 11365465 | ID=MS.gene018243.t1.exon5;Parent=MS.gene018243.t1 |
| chr6.3 | CDS | 11365465 | 11365594 | 11365465 | ID=cds.MS.gene018243.t1;Parent=MS.gene018243.t1 |
| Gene Sequence |
| Protein sequence |
