Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018234.t1 | RHN50300.1 | 95.2 | 460 | 22 | 0 | 1 | 460 | 1 | 460 | 1.70E-224 | 788.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018234.t1 | Q9LI61 | 64.8 | 412 | 143 | 2 | 26 | 436 | 24 | 434 | 3.9e-145 | 516.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018234.t1 | A0A396HAI1 | 95.2 | 460 | 22 | 0 | 1 | 460 | 1 | 460 | 1.2e-224 | 788.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31156 | MS.gene018234 | PPI |
| MS.gene022024 | MS.gene018234 | PPI |
| MS.gene018234 | MS.gene37173 | PPI |
| MS.gene37165 | MS.gene018234 | PPI |
| MS.gene018234 | MS.gene44762 | PPI |
| MS.gene018234 | MS.gene41176 | PPI |
| MS.gene45489 | MS.gene018234 | PPI |
| MS.gene018234 | MS.gene86947 | PPI |
| MS.gene018234 | MS.gene018243 | PPI |
| MS.gene018235 | MS.gene018234 | PPI |
| MS.gene44762 | MS.gene018234 | PPI |
| MS.gene067430 | MS.gene018234 | PPI |
| MS.gene018234 | MS.gene37166 | PPI |
| MS.gene018234 | MS.gene86432 | PPI |
| MS.gene83556 | MS.gene018234 | PPI |
| MS.gene018234 | MS.gene052122 | PPI |
| MS.gene62008 | MS.gene018234 | PPI |
| MS.gene018234 | MS.gene071169 | PPI |
| MS.gene021114 | MS.gene018234 | PPI |
| MS.gene004045 | MS.gene018234 | PPI |
| MS.gene75991 | MS.gene018234 | PPI |
| MS.gene30955 | MS.gene018234 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018234.t1 | MTR_6g016275 | 95.000 | 460 | 23 | 0 | 1 | 460 | 1 | 460 | 0.0 | 847 |
| MS.gene018234.t1 | MTR_6g016295 | 83.964 | 449 | 71 | 1 | 11 | 458 | 8 | 456 | 0.0 | 745 |
| MS.gene018234.t1 | MTR_6g016245 | 82.444 | 450 | 78 | 1 | 11 | 459 | 6 | 455 | 0.0 | 736 |
| MS.gene018234.t1 | MTR_6g016270 | 80.087 | 462 | 89 | 2 | 1 | 459 | 1 | 462 | 0.0 | 704 |
| MS.gene018234.t1 | MTR_7g017630 | 71.767 | 464 | 125 | 3 | 1 | 459 | 1 | 463 | 0.0 | 679 |
| MS.gene018234.t1 | MTR_6g024240 | 76.667 | 270 | 8 | 2 | 191 | 460 | 38 | 252 | 2.86e-131 | 379 |
| MS.gene018234.t1 | MTR_5g083760 | 43.287 | 432 | 238 | 4 | 27 | 452 | 11 | 441 | 3.09e-126 | 374 |
| MS.gene018234.t1 | MTR_5g083770 | 43.056 | 432 | 236 | 4 | 25 | 454 | 5 | 428 | 4.46e-123 | 365 |
| MS.gene018234.t1 | MTR_3g072110 | 41.419 | 437 | 246 | 4 | 25 | 459 | 10 | 438 | 4.70e-118 | 353 |
| MS.gene018234.t1 | MTR_2g104180 | 44.787 | 422 | 222 | 6 | 43 | 460 | 73 | 487 | 1.46e-113 | 343 |
| MS.gene018234.t1 | MTR_6g016245 | 82.323 | 198 | 35 | 0 | 262 | 459 | 190 | 387 | 5.02e-110 | 331 |
| MS.gene018234.t1 | MTR_6g016245 | 78.804 | 184 | 38 | 1 | 11 | 193 | 6 | 189 | 8.41e-103 | 312 |
| MS.gene018234.t1 | MTR_1396s0010 | 57.143 | 266 | 92 | 2 | 195 | 460 | 1 | 244 | 2.34e-101 | 303 |
| MS.gene018234.t1 | MTR_1396s0010 | 61.692 | 201 | 76 | 1 | 175 | 375 | 1 | 200 | 1.12e-82 | 253 |
| MS.gene018234.t1 | MTR_8g065630 | 49.261 | 203 | 89 | 3 | 11 | 199 | 4 | 206 | 2.18e-53 | 179 |
| MS.gene018234.t1 | MTR_8g065650 | 50.754 | 199 | 84 | 3 | 11 | 195 | 4 | 202 | 2.95e-50 | 181 |
| MS.gene018234.t1 | MTR_0658s0030 | 57.724 | 123 | 51 | 1 | 338 | 460 | 1 | 122 | 1.10e-42 | 147 |
| MS.gene018234.t1 | MTR_3g072105 | 46.667 | 75 | 40 | 0 | 46 | 120 | 23 | 97 | 4.32e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018234.t1 | AT3G30390 | 64.126 | 446 | 156 | 3 | 16 | 458 | 12 | 456 | 0.0 | 579 |
| MS.gene018234.t1 | AT3G30390 | 64.126 | 446 | 156 | 3 | 16 | 458 | 12 | 456 | 0.0 | 579 |
| MS.gene018234.t1 | AT3G30390 | 64.126 | 446 | 156 | 3 | 16 | 458 | 12 | 456 | 0.0 | 579 |
| MS.gene018234.t1 | AT5G38820 | 63.039 | 441 | 159 | 3 | 21 | 458 | 16 | 455 | 0.0 | 570 |
| MS.gene018234.t1 | AT5G38820 | 63.039 | 441 | 159 | 3 | 21 | 458 | 11 | 450 | 0.0 | 570 |
| MS.gene018234.t1 | AT5G38820 | 63.039 | 441 | 159 | 3 | 21 | 458 | 11 | 450 | 0.0 | 570 |
| MS.gene018234.t1 | AT3G56200 | 42.890 | 429 | 238 | 4 | 28 | 454 | 9 | 432 | 1.64e-115 | 346 |
| MS.gene018234.t1 | AT2G40420 | 44.651 | 430 | 233 | 5 | 25 | 452 | 6 | 432 | 3.74e-114 | 343 |
| MS.gene018234.t1 | AT1G80510 | 43.885 | 417 | 224 | 5 | 43 | 454 | 73 | 484 | 3.31e-101 | 311 |
| MS.gene018234.t1 | AT2G41190 | 22.363 | 474 | 316 | 12 | 8 | 459 | 93 | 536 | 4.17e-11 | 65.5 |
Find 92 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTATTGGTGCTGGAATTA+TGG | 0.156418 | 6.3:+11490423 | MS.gene018234:CDS |
| AATTTATCAACCACAATTAT+TGG | 0.168967 | 6.3:+11490409 | MS.gene018234:CDS |
| TTCTTTGGGTTCCTACTATT+TGG | 0.194546 | 6.3:+11492083 | MS.gene018234:CDS |
| ACATCACTTTCTTGTGTCTT+AGG | 0.206909 | 6.3:-11490340 | None:intergenic |
| TTCTTCCTATGGAAGTCTTA+TGG | 0.214598 | 6.3:+11490567 | MS.gene018234:CDS |
| TACTTACTGACAAGCTTCTT+TGG | 0.226981 | 6.3:+11492068 | MS.gene018234:CDS |
| ATTGTAGGTGATGTGATTTC+TGG | 0.229977 | 6.3:+11490774 | MS.gene018234:intron |
| GGAGATGCCTATGGGAAATA+TGG | 0.268974 | 6.3:+11490589 | MS.gene018234:CDS |
| GTTAAGCTTGATGAGTTTAA+TGG | 0.269532 | 6.3:+11490361 | MS.gene018234:CDS |
| CAAATTTCATACCTAACATT+TGG | 0.283528 | 6.3:+11492357 | MS.gene018234:CDS |
| TCTTCCTATGGAAGTCTTAT+GGG | 0.297191 | 6.3:+11490568 | MS.gene018234:CDS |
| TCCAAGATCAGTATCAAAAT+TGG | 0.300073 | 6.3:-11492132 | None:intergenic |
| ATTATTGGTGCTGGAATTAT+GGG | 0.320496 | 6.3:+11490424 | MS.gene018234:CDS |
| ATTTGTTGTGGTTGCACCTT+TGG | 0.333916 | 6.3:+11490893 | MS.gene018234:CDS |
| CTCAATGCATAGAAAATTAC+AGG | 0.336695 | 6.3:-11492224 | None:intergenic |
| ACTTACTGACAAGCTTCTTT+GGG | 0.347899 | 6.3:+11492069 | MS.gene018234:CDS |
| AGTCAATTGATTTCATAATC+AGG | 0.357461 | 6.3:+11490524 | MS.gene018234:CDS |
| TTTGGTGTCCATTGGTGGAC+TGG | 0.358328 | 6.3:+11490843 | MS.gene018234:CDS |
| TTCCAGCTGCAATCGCTCTA+AGG | 0.372710 | 6.3:+11492432 | MS.gene018234:CDS |
| AAATTTCATACCTAACATTT+GGG | 0.375847 | 6.3:+11492358 | MS.gene018234:CDS |
| CACCTGTTGCTCCAGTGAAT+TGG | 0.376723 | 6.3:-11492388 | None:intergenic |
| TTCCAATTCACTGGAGCAAC+AGG | 0.378767 | 6.3:+11492386 | MS.gene018234:CDS |
| TTCACGTCTGCACTGTCAAT+TGG | 0.382824 | 6.3:+11491298 | MS.gene018234:CDS |
| TTCCTCATCAAGAAGGCCTT+TGG | 0.387053 | 6.3:+11492271 | MS.gene018234:CDS |
| TGGGATGCCAAGACTCTTCC+CGG | 0.388731 | 6.3:+11491387 | MS.gene018234:CDS |
| GCATTGAGGTTCAACGTAGA+TGG | 0.397418 | 6.3:+11492239 | MS.gene018234:CDS |
| TGGAAAATAACCCAAATGTT+AGG | 0.406406 | 6.3:-11492368 | None:intergenic |
| TCAACCACAATTATTGGTGC+TGG | 0.417512 | 6.3:+11490415 | MS.gene018234:CDS |
| AGATTATAAGTGGCGGCATT+GGG | 0.419706 | 6.3:+11491368 | MS.gene018234:CDS |
| TTGGTGTCCATTGGTGGACT+GGG | 0.426711 | 6.3:+11490844 | MS.gene018234:CDS |
| AAGATTATAAGTGGCGGCAT+TGG | 0.436782 | 6.3:+11491367 | MS.gene018234:CDS |
| GGTGTCCTTGAAGGATGGTT+TGG | 0.437155 | 6.3:+11490825 | MS.gene018234:CDS |
| GCAGGGAAACTTTCTTCCTA+TGG | 0.440225 | 6.3:+11490556 | MS.gene018234:CDS |
| AGTCTTATGGGAGATGCCTA+TGG | 0.447015 | 6.3:+11490580 | MS.gene018234:CDS |
| ACTGATCTTGGAATTCCCTT+CGG | 0.448477 | 6.3:+11492143 | MS.gene018234:CDS |
| CACCTTAGAGCGATTGCAGC+TGG | 0.449891 | 6.3:-11492434 | None:intergenic |
| TCTCTGTCAGTAAAGCTGTT+AGG | 0.455879 | 6.3:-11490501 | None:intergenic |
| AACTAAAACAGATACGATTC+TGG | 0.460597 | 6.3:+11492571 | MS.gene018234:CDS |
| CTTGTTGTGATTATCTTCCT+CGG | 0.466762 | 6.3:+11492332 | MS.gene018234:CDS |
| TTGGTCAGCTTTAAGCGGAT+TGG | 0.477571 | 6.3:+11490912 | MS.gene018234:CDS |
| AAGGATGGTTTGGTGTCCAT+TGG | 0.478302 | 6.3:+11490835 | MS.gene018234:CDS |
| GAACTCCTTCACCAAATAGT+AGG | 0.481003 | 6.3:-11492094 | None:intergenic |
| GATGGTTTGGTGTCCATTGG+TGG | 0.485337 | 6.3:+11490838 | MS.gene018234:CDS |
| CACCATGTTGGTGTCCTTGA+AGG | 0.487937 | 6.3:+11490816 | MS.gene018234:CDS |
| TCAAAGCATAGAGAATGAAC+TGG | 0.495561 | 6.3:+11491986 | MS.gene018234:CDS |
| GGGTTCCTACTATTTGGTGA+AGG | 0.499413 | 6.3:+11492089 | MS.gene018234:CDS |
| GGCTGTCCTTATGATAGTGC+TGG | 0.499771 | 6.3:+11492592 | MS.gene018234:CDS |
| TACTTTCGCAACATTTGTTG+TGG | 0.503291 | 6.3:+11490881 | MS.gene018234:CDS |
| AGATACCTACGGCAATGATA+AGG | 0.508676 | 6.3:-11491336 | None:intergenic |
| ATCATGTACATGATCATTGT+TGG | 0.510416 | 6.3:+11490658 | MS.gene018234:CDS |
| GGACACCAAACCATCCTTCA+AGG | 0.514169 | 6.3:-11490830 | None:intergenic |
| ATCATTGAGCGCAGAACCGA+AGG | 0.528664 | 6.3:-11492159 | None:intergenic |
| GTAATCACCGGGAAGAGTCT+TGG | 0.530223 | 6.3:-11491394 | None:intergenic |
| ACACCGACGAGCATAGAGTA+AGG | 0.537017 | 6.3:-11492046 | None:intergenic |
| TCAGTTATCAAGATTATAAG+TGG | 0.540094 | 6.3:+11491358 | MS.gene018234:CDS |
| GAAATATGGAAAAGCGTCGT+TGG | 0.541918 | 6.3:+11490603 | MS.gene018234:CDS |
| AAACCGCCAGCACTATCATA+AGG | 0.542140 | 6.3:-11492598 | None:intergenic |
| CACCTTTGGTCAGCTTTAAG+CGG | 0.542192 | 6.3:+11490907 | MS.gene018234:CDS |
| ATTTCTGGAACAACTTCAAG+TGG | 0.544374 | 6.3:+11490789 | MS.gene018234:CDS |
| ATGTTGGTGTCCTTGAAGGA+TGG | 0.557320 | 6.3:+11490820 | MS.gene018234:CDS |
| GTCTTATGGGAGATGCCTAT+GGG | 0.561627 | 6.3:+11490581 | MS.gene018234:CDS |
| GAAGCTGCATCAGTAATCAC+CGG | 0.568484 | 6.3:-11491406 | None:intergenic |
| TCTTGTGTCTTAGGTAACAA+AGG | 0.569279 | 6.3:-11490331 | None:intergenic |
| AACCAAAGGCCTTCTTGATG+AGG | 0.573378 | 6.3:-11492273 | None:intergenic |
| ATGTACGCCCAGTCCACCAA+TGG | 0.578995 | 6.3:-11490851 | None:intergenic |
| TTCCCTTACTCTATGCTCGT+CGG | 0.581558 | 6.3:+11492043 | MS.gene018234:CDS |
| AATTCCAGCACCAATAATTG+TGG | 0.583355 | 6.3:-11490419 | None:intergenic |
| ATCTCCCATAAGACTTCCAT+AGG | 0.587673 | 6.3:-11490572 | None:intergenic |
| CGAGGAAGATAATCACAACA+AGG | 0.596566 | 6.3:-11492331 | None:intergenic |
| GAGGATTCCTCACGGATACG+TGG | 0.599496 | 6.3:+11492008 | MS.gene018234:CDS |
| TCAAGTGGAATTCACCATGT+TGG | 0.600654 | 6.3:+11490804 | MS.gene018234:CDS |
| AGGATTCCTCACGGATACGT+GGG | 0.602701 | 6.3:+11492009 | MS.gene018234:CDS |
| ACGTATGCTGTCATCAGCAC+AGG | 0.604612 | 6.3:-11491454 | None:intergenic |
| CTTGATAACTGAGATACCTA+CGG | 0.611394 | 6.3:-11491347 | None:intergenic |
| CTGAAGTTATCAACAACCAA+AGG | 0.615882 | 6.3:-11492287 | None:intergenic |
| CACCGACGAGCATAGAGTAA+GGG | 0.621195 | 6.3:-11492045 | None:intergenic |
| ATCCTTCAAGGACACCAACA+TGG | 0.633511 | 6.3:-11490818 | None:intergenic |
| AAGCTGCATCAGTAATCACC+GGG | 0.647022 | 6.3:-11491405 | None:intergenic |
| ATCCGCTTAAAGCTGACCAA+AGG | 0.647778 | 6.3:-11490909 | None:intergenic |
| GTTATCAAGATTATAAGTGG+CGG | 0.648299 | 6.3:+11491361 | MS.gene018234:CDS |
| TGAAAGGTGAAAATGACTAG+TGG | 0.650767 | 6.3:+11490241 | None:intergenic |
| AAGCATAGAGAATGAACTGG+AGG | 0.650959 | 6.3:+11491989 | MS.gene018234:CDS |
| ATGAACTGGAGGATTCCTCA+CGG | 0.655141 | 6.3:+11492000 | MS.gene018234:CDS |
| TGTCCTTATGATAGTGCTGG+CGG | 0.658854 | 6.3:+11492595 | MS.gene018234:CDS |
| GGATTCCTCACGGATACGTG+GGG | 0.661899 | 6.3:+11492010 | MS.gene018234:CDS |
| GTACATGATCAGACTACCGA+TGG | 0.672010 | 6.3:-11490644 | None:intergenic |
| TCATTGAGCGCAGAACCGAA+GGG | 0.672577 | 6.3:-11492158 | None:intergenic |
| TAGGTATGAAATTTGCTCCG+AGG | 0.690029 | 6.3:-11492349 | None:intergenic |
| GAGGAAGATAATCACAACAA+GGG | 0.692010 | 6.3:-11492330 | None:intergenic |
| AGGACTATGACAGTAAGACC+AGG | 0.704152 | 6.3:-11490481 | None:intergenic |
| GCATACGTATGTCACTACAA+TGG | 0.710732 | 6.3:+11491469 | MS.gene018234:CDS |
| CACAACCCCACGTATCCGTG+AGG | 0.715105 | 6.3:-11492015 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGATTTTCAGATTATTT+TGG | + | chr6.3:11491682-11491701 | MS.gene018234:intron | 15.0% |
| !! | AAATTTCATACCTAACATTT+GGG | + | chr6.3:11492358-11492377 | MS.gene018234:CDS | 20.0% |
| !! | AATTTATCAACCACAATTAT+TGG | + | chr6.3:11490409-11490428 | MS.gene018234:CDS | 20.0% |
| !! | ATTTGGTATACATGATTATT+TGG | + | chr6.3:11491126-11491145 | MS.gene018234:intron | 20.0% |
| !! | CGTTTGTAAATTAAGAAAAA+TGG | + | chr6.3:11491054-11491073 | MS.gene018234:intron | 20.0% |
| !! | TATCATTAGAGAAGAATTTA+AGG | + | chr6.3:11490715-11490734 | MS.gene018234:intron | 20.0% |
| !! | TGCTTCATAGATTTATTATA+TGG | + | chr6.3:11491933-11491952 | MS.gene018234:intron | 20.0% |
| !! | TTAATTTACAAACGATGAAA+TGG | - | chr6.3:11491048-11491067 | None:intergenic | 20.0% |
| !!! | GATTGATAGTATATATTTTG+TGG | + | chr6.3:11491792-11491811 | MS.gene018234:intron | 20.0% |
| !!! | TAGTATATATTTTGTGGTTT+AGG | + | chr6.3:11491798-11491817 | MS.gene018234:intron | 20.0% |
| !!! | TTTGTTTTTGTTCATATTGT+AGG | + | chr6.3:11490759-11490778 | MS.gene018234:intron | 20.0% |
| ! | AAAGTCTAGACTTAAGAATA+TGG | - | chr6.3:11490689-11490708 | None:intergenic | 25.0% |
| ! | AAGATCAATAAACAACTAGT+TGG | + | chr6.3:11491082-11491101 | MS.gene018234:intron | 25.0% |
| ! | AGACTTGTATAATTGTAAGT+TGG | + | chr6.3:11491540-11491559 | MS.gene018234:intron | 25.0% |
| ! | CAAATTTCATACCTAACATT+TGG | + | chr6.3:11492357-11492376 | MS.gene018234:CDS | 25.0% |
| ! | GATTTGCATGAAGAATATTA+TGG | + | chr6.3:11491568-11491587 | MS.gene018234:intron | 25.0% |
| ! | TCAGTTATCAAGATTATAAG+TGG | + | chr6.3:11491358-11491377 | MS.gene018234:CDS | 25.0% |
| ! | TCATAAAAAATTGACACAGA+TGG | - | chr6.3:11491656-11491675 | None:intergenic | 25.0% |
| !! | AGAGAAGAATTTAAGGTTTA+AGG | + | chr6.3:11490722-11490741 | MS.gene018234:intron | 25.0% |
| !! | AGTCAATTGATTTCATAATC+AGG | + | chr6.3:11490524-11490543 | MS.gene018234:CDS | 25.0% |
| !! | ATTTCATAATCAGGTTTTCT+AGG | + | chr6.3:11490533-11490552 | MS.gene018234:CDS | 25.0% |
| !! | TTTCATAATCAGGTTTTCTA+GGG | + | chr6.3:11490534-11490553 | MS.gene018234:CDS | 25.0% |
| !!! | AGTTTTGTTGTGAAGTTATT+TGG | + | chr6.3:11491200-11491219 | MS.gene018234:intron | 25.0% |
| !!! | ATATGTGTTTTAAGTACCAT+CGG | + | chr6.3:11490628-11490647 | MS.gene018234:CDS | 25.0% |
| !!! | GTATAATTGTAAGTTGGTTA+TGG | + | chr6.3:11491546-11491565 | MS.gene018234:intron | 25.0% |
| AAATCTATGAAGCAAACAAG+TGG | - | chr6.3:11491927-11491946 | None:intergenic | 30.0% | |
| AACTAAAACAGATACGATTC+TGG | + | chr6.3:11492571-11492590 | MS.gene018234:CDS | 30.0% | |
| ATAGATTAGACAACCATGTT+AGG | + | chr6.3:11490983-11491002 | MS.gene018234:intron | 30.0% | |
| ATCATGTACATGATCATTGT+TGG | + | chr6.3:11490658-11490677 | MS.gene018234:CDS | 30.0% | |
| CATGGTTATTGATGCTTATT+TGG | + | chr6.3:11491109-11491128 | MS.gene018234:intron | 30.0% | |
| CTCAATGCATAGAAAATTAC+AGG | - | chr6.3:11492227-11492246 | None:intergenic | 30.0% | |
| GTTAAGCTTGATGAGTTTAA+TGG | + | chr6.3:11490361-11490380 | MS.gene018234:CDS | 30.0% | |
| GTTATCAAGATTATAAGTGG+CGG | + | chr6.3:11491361-11491380 | MS.gene018234:CDS | 30.0% | |
| TCCAAGATCAGTATCAAAAT+TGG | - | chr6.3:11492135-11492154 | None:intergenic | 30.0% | |
| TGGAAAATAACCCAAATGTT+AGG | - | chr6.3:11492371-11492390 | None:intergenic | 30.0% | |
| TTCCACGTACTAATAAACAT+CGG | + | chr6.3:11491859-11491878 | MS.gene018234:intron | 30.0% | |
| TTGCAAAAGTTTCAGTTATG+CGG | + | chr6.3:11491888-11491907 | MS.gene018234:intron | 30.0% | |
| ! | AAGCATTTTCTTTTCCTACA+GGG | + | chr6.3:11492532-11492551 | MS.gene018234:intron | 30.0% |
| ! | CTGTAATTTTCTATGCATTG+AGG | + | chr6.3:11492225-11492244 | MS.gene018234:CDS | 30.0% |
| ! | TAAGCATTTTCTTTTCCTAC+AGG | + | chr6.3:11492531-11492550 | MS.gene018234:intron | 30.0% |
| ! | TATATTTTGTGGTTTAGGCT+TGG | + | chr6.3:11491803-11491822 | MS.gene018234:intron | 30.0% |
| ! | TGATATTTTCCTCATCAAGA+AGG | + | chr6.3:11492264-11492283 | MS.gene018234:CDS | 30.0% |
| ! | TTTAATGGAGCTTCATTTTC+TGG | + | chr6.3:11490376-11490395 | MS.gene018234:CDS | 30.0% |
| ! | TTTTTCACTCGAGTACAAAT+TGG | + | chr6.3:11491161-11491180 | MS.gene018234:intron | 30.0% |
| !! | AATTATTGGTGCTGGAATTA+TGG | + | chr6.3:11490423-11490442 | MS.gene018234:CDS | 30.0% |
| !! | AGGCAGTGTTTTTATATACT+TGG | + | chr6.3:11491737-11491756 | MS.gene018234:intron | 30.0% |
| !! | ATTATTGGTGCTGGAATTAT+GGG | + | chr6.3:11490424-11490443 | MS.gene018234:CDS | 30.0% |
| !! | TTTGTCATAGAAGTGTTACA+TGG | - | chr6.3:11491233-11491252 | None:intergenic | 30.0% |
| !! | TTTTCAGATTAGTTGGACAT+GGG | - | chr6.3:11491629-11491648 | None:intergenic | 30.0% |
| !!! | GATTTTTTCTTCTCTGCATT+AGG | - | chr6.3:11490277-11490296 | None:intergenic | 30.0% |
| !!! | TGGTTACTTTTCAGATTAGT+TGG | - | chr6.3:11491636-11491655 | None:intergenic | 30.0% |
| AAAAAGTTGGGAATAGTACC+TGG | + | chr6.3:11490463-11490482 | MS.gene018234:CDS | 35.0% | |
| AATTCCAGCACCAATAATTG+TGG | - | chr6.3:11490422-11490441 | None:intergenic | 35.0% | |
| ACATCACTTTCTTGTGTCTT+AGG | - | chr6.3:11490343-11490362 | None:intergenic | 35.0% | |
| ACTTACTGACAAGCTTCTTT+GGG | + | chr6.3:11492069-11492088 | MS.gene018234:CDS | 35.0% | |
| ATTGTAGGTGATGTGATTTC+TGG | + | chr6.3:11490774-11490793 | MS.gene018234:intron | 35.0% | |
| CTGAAGTTATCAACAACCAA+AGG | - | chr6.3:11492290-11492309 | None:intergenic | 35.0% | |
| GAGGAAGATAATCACAACAA+GGG | - | chr6.3:11492333-11492352 | None:intergenic | 35.0% | |
| GTGCATCATTAGTCAAAACA+CGG | + | chr6.3:11491707-11491726 | MS.gene018234:intron | 35.0% | |
| TACTTACTGACAAGCTTCTT+TGG | + | chr6.3:11492068-11492087 | MS.gene018234:CDS | 35.0% | |
| TCAAAGCATAGAGAATGAAC+TGG | + | chr6.3:11491986-11492005 | MS.gene018234:CDS | 35.0% | |
| TCTTGTGTCTTAGGTAACAA+AGG | - | chr6.3:11490334-11490353 | None:intergenic | 35.0% | |
| TGCAAAAGTTTCAGTTATGC+GGG | + | chr6.3:11491889-11491908 | MS.gene018234:intron | 35.0% | |
| TGTCTAATCTATAGCCGTTT+CGG | - | chr6.3:11490975-11490994 | None:intergenic | 35.0% | |
| TTCTTCCTATGGAAGTCTTA+TGG | + | chr6.3:11490567-11490586 | MS.gene018234:CDS | 35.0% | |
| TTTGAGTCATCTTCCTAACA+TGG | - | chr6.3:11490999-11491018 | None:intergenic | 35.0% | |
| ! | AAACAACTAGTTGGTACACA+TGG | + | chr6.3:11491091-11491110 | MS.gene018234:intron | 35.0% |
| ! | CTTGATAACTGAGATACCTA+CGG | - | chr6.3:11491350-11491369 | None:intergenic | 35.0% |
| ! | CTTGTTGTGATTATCTTCCT+CGG | + | chr6.3:11492332-11492351 | MS.gene018234:CDS | 35.0% |
| ! | GATTGGTGAGTGATTTTTCT+TGG | + | chr6.3:11490929-11490948 | MS.gene018234:intron | 35.0% |
| ! | TACTTTCGCAACATTTGTTG+TGG | + | chr6.3:11490881-11490900 | MS.gene018234:CDS | 35.0% |
| ! | TCTTCCTATGGAAGTCTTAT+GGG | + | chr6.3:11490568-11490587 | MS.gene018234:CDS | 35.0% |
| ! | TTCTTTGGGTTCCTACTATT+TGG | + | chr6.3:11492083-11492102 | MS.gene018234:CDS | 35.0% |
| !! | AGTTGTGTCATTTACCGAAA+CGG | + | chr6.3:11490958-11490977 | MS.gene018234:intron | 35.0% |
| !! | ATTTCTGGAACAACTTCAAG+TGG | + | chr6.3:11490789-11490808 | MS.gene018234:CDS | 35.0% |
| !! | CTTTTCAGATTAGTTGGACA+TGG | - | chr6.3:11491630-11491649 | None:intergenic | 35.0% |
| !! | GCCAATTTTGATACTGATCT+TGG | + | chr6.3:11492131-11492150 | MS.gene018234:CDS | 35.0% |
| !! | TGGGTTATTTTCCAATTCAC+TGG | + | chr6.3:11492377-11492396 | MS.gene018234:CDS | 35.0% |
| AAAAGTTTCAGTTATGCGGG+AGG | + | chr6.3:11491892-11491911 | MS.gene018234:intron | 40.0% | |
| AAGATTATAAGTGGCGGCAT+TGG | + | chr6.3:11491367-11491386 | MS.gene018234:CDS | 40.0% | |
| AAGCATAGAGAATGAACTGG+AGG | + | chr6.3:11491989-11492008 | MS.gene018234:CDS | 40.0% | |
| ACTGATCTTGGAATTCCCTT+CGG | + | chr6.3:11492143-11492162 | MS.gene018234:CDS | 40.0% | |
| AGATACCTACGGCAATGATA+AGG | - | chr6.3:11491339-11491358 | None:intergenic | 40.0% | |
| AGATTATAAGTGGCGGCATT+GGG | + | chr6.3:11491368-11491387 | MS.gene018234:CDS | 40.0% | |
| AGTCAAAACACGGAACACTA+AGG | + | chr6.3:11491717-11491736 | MS.gene018234:intron | 40.0% | |
| ATCTCCCATAAGACTTCCAT+AGG | - | chr6.3:11490575-11490594 | None:intergenic | 40.0% | |
| ATGGGATGAGGTAATGCTTA+TGG | - | chr6.3:11491611-11491630 | None:intergenic | 40.0% | |
| CCTGCATGTGTGAAAAAGTT+GGG | + | chr6.3:11490451-11490470 | MS.gene018234:CDS | 40.0% | |
| CGAGGAAGATAATCACAACA+AGG | - | chr6.3:11492334-11492353 | None:intergenic | 40.0% | |
| CGAGTGAAAAAAGTGAGCAT+TGG | - | chr6.3:11491152-11491171 | None:intergenic | 40.0% | |
| GAACTCCTTCACCAAATAGT+AGG | - | chr6.3:11492097-11492116 | None:intergenic | 40.0% | |
| GCATACGTATGTCACTACAA+TGG | + | chr6.3:11491469-11491488 | MS.gene018234:CDS | 40.0% | |
| TCAACCACAATTATTGGTGC+TGG | + | chr6.3:11490415-11490434 | MS.gene018234:CDS | 40.0% | |
| TCAAGTGGAATTCACCATGT+TGG | + | chr6.3:11490804-11490823 | MS.gene018234:CDS | 40.0% | |
| TCGGTCACTGAATTCATACA+AGG | + | chr6.3:11492460-11492479 | MS.gene018234:intron | 40.0% | |
| TCTCTGTCAGTAAAGCTGTT+AGG | - | chr6.3:11490504-11490523 | None:intergenic | 40.0% | |
| TGCCGATGTTTATTAGTACG+TGG | - | chr6.3:11491864-11491883 | None:intergenic | 40.0% | |
| TTAGGAAGATGACTCAAACG+CGG | + | chr6.3:11491001-11491020 | MS.gene018234:intron | 40.0% | |
| ! | CGCTTTTCCATATTTCCCAT+AGG | - | chr6.3:11490599-11490618 | None:intergenic | 40.0% |
| ! | CTTTTCCTTATCATTGCCGT+AGG | + | chr6.3:11491331-11491350 | MS.gene018234:CDS | 40.0% |
| ! | TAGGTATGAAATTTGCTCCG+AGG | - | chr6.3:11492352-11492371 | None:intergenic | 40.0% |
| ! | TATGTTGTATCGATCCCTGT+AGG | - | chr6.3:11492549-11492568 | None:intergenic | 40.0% |
| !! | ATTTGTTGTGGTTGCACCTT+TGG | + | chr6.3:11490893-11490912 | MS.gene018234:CDS | 40.0% |
| !! | GAAATATGGAAAAGCGTCGT+TGG | + | chr6.3:11490603-11490622 | MS.gene018234:CDS | 40.0% |
| !!! | ATAATCAGGTTTTCTAGGGC+AGG | + | chr6.3:11490538-11490557 | MS.gene018234:CDS | 40.0% |
| !!! | TAATCAGGTTTTCTAGGGCA+GGG | + | chr6.3:11490539-11490558 | MS.gene018234:CDS | 40.0% |
| AAACCGCCAGCACTATCATA+AGG | - | chr6.3:11492601-11492620 | None:intergenic | 45.0% | |
| AACCAAAGGCCTTCTTGATG+AGG | - | chr6.3:11492276-11492295 | None:intergenic | 45.0% | |
| AAGCTGCATCAGTAATCACC+GGG | - | chr6.3:11491408-11491427 | None:intergenic | 45.0% | |
| AGATGACTCAAACGCGGTAA+TGG | + | chr6.3:11491007-11491026 | MS.gene018234:intron | 45.0% | |
| AGGACTATGACAGTAAGACC+AGG | - | chr6.3:11490484-11490503 | None:intergenic | 45.0% | |
| ATCCGCTTAAAGCTGACCAA+AGG | - | chr6.3:11490912-11490931 | None:intergenic | 45.0% | |
| ATCCTTCAAGGACACCAACA+TGG | - | chr6.3:11490821-11490840 | None:intergenic | 45.0% | |
| ATGAACTGGAGGATTCCTCA+CGG | + | chr6.3:11492000-11492019 | MS.gene018234:CDS | 45.0% | |
| GAAGCTGCATCAGTAATCAC+CGG | - | chr6.3:11491409-11491428 | None:intergenic | 45.0% | |
| GCAGGGAAACTTTCTTCCTA+TGG | + | chr6.3:11490556-11490575 | MS.gene018234:CDS | 45.0% | |
| GCATTGAGGTTCAACGTAGA+TGG | + | chr6.3:11492239-11492258 | MS.gene018234:CDS | 45.0% | |
| GCCTGCATGTGTGAAAAAGT+TGG | + | chr6.3:11490450-11490469 | MS.gene018234:CDS | 45.0% | |
| GGAGATGCCTATGGGAAATA+TGG | + | chr6.3:11490589-11490608 | MS.gene018234:CDS | 45.0% | |
| GTACATGATCAGACTACCGA+TGG | - | chr6.3:11490647-11490666 | None:intergenic | 45.0% | |
| GTCTTATGGGAGATGCCTAT+GGG | + | chr6.3:11490581-11490600 | MS.gene018234:CDS | 45.0% | |
| TAGTACGTGGAATCAGCTTG+TGG | - | chr6.3:11491851-11491870 | None:intergenic | 45.0% | |
| TTCACGTCTGCACTGTCAAT+TGG | + | chr6.3:11491298-11491317 | MS.gene018234:CDS | 45.0% | |
| TTCCAATTCACTGGAGCAAC+AGG | + | chr6.3:11492386-11492405 | MS.gene018234:CDS | 45.0% | |
| TTCCCTTACTCTATGCTCGT+CGG | + | chr6.3:11492043-11492062 | MS.gene018234:CDS | 45.0% | |
| TTCCTCATCAAGAAGGCCTT+TGG | + | chr6.3:11492271-11492290 | MS.gene018234:CDS | 45.0% | |
| ! | ACTCAAACGCGGTAATGGTA+TGG | + | chr6.3:11491012-11491031 | MS.gene018234:intron | 45.0% |
| ! | AGTCTTATGGGAGATGCCTA+TGG | + | chr6.3:11490580-11490599 | MS.gene018234:CDS | 45.0% |
| ! | ATGTTGGTGTCCTTGAAGGA+TGG | + | chr6.3:11490820-11490839 | MS.gene018234:CDS | 45.0% |
| ! | GATTAGTTGGACATGGGATG+AGG | - | chr6.3:11491623-11491642 | None:intergenic | 45.0% |
| ! | GGGTTCCTACTATTTGGTGA+AGG | + | chr6.3:11492089-11492108 | MS.gene018234:CDS | 45.0% |
| ! | TGTCCTTATGATAGTGCTGG+CGG | + | chr6.3:11492595-11492614 | MS.gene018234:CDS | 45.0% |
| ! | TTAGGCTTGGTTGCTTGATG+TGG | + | chr6.3:11491816-11491835 | MS.gene018234:intron | 45.0% |
| !! | AAGGATGGTTTGGTGTCCAT+TGG | + | chr6.3:11490835-11490854 | MS.gene018234:CDS | 45.0% |
| !! | CAATCGCTCTAAGGTGAGTT+CGG | + | chr6.3:11492441-11492460 | MS.gene018234:intron | 45.0% |
| !! | CACCTTTGGTCAGCTTTAAG+CGG | + | chr6.3:11490907-11490926 | MS.gene018234:CDS | 45.0% |
| !! | TTGGTCAGCTTTAAGCGGAT+TGG | + | chr6.3:11490912-11490931 | MS.gene018234:CDS | 45.0% |
| !!! | CCCAACTTTTTCACACATGC+AGG | - | chr6.3:11490454-11490473 | None:intergenic | 45.0% |
| ACACCGACGAGCATAGAGTA+AGG | - | chr6.3:11492049-11492068 | None:intergenic | 50.0% | |
| ACGTATGCTGTCATCAGCAC+AGG | - | chr6.3:11491457-11491476 | None:intergenic | 50.0% | |
| AGGATTCCTCACGGATACGT+GGG | + | chr6.3:11492009-11492028 | MS.gene018234:CDS | 50.0% | |
| ATCATTGAGCGCAGAACCGA+AGG | - | chr6.3:11492162-11492181 | None:intergenic | 50.0% | |
| CACCGACGAGCATAGAGTAA+GGG | - | chr6.3:11492048-11492067 | None:intergenic | 50.0% | |
| CACCTGTTGCTCCAGTGAAT+TGG | - | chr6.3:11492391-11492410 | None:intergenic | 50.0% | |
| GGACACCAAACCATCCTTCA+AGG | - | chr6.3:11490833-11490852 | None:intergenic | 50.0% | |
| GGTGTCCTTGAAGGATGGTT+TGG | + | chr6.3:11490825-11490844 | MS.gene018234:CDS | 50.0% | |
| GTAATCACCGGGAAGAGTCT+TGG | - | chr6.3:11491397-11491416 | None:intergenic | 50.0% | |
| TCATTGAGCGCAGAACCGAA+GGG | - | chr6.3:11492161-11492180 | None:intergenic | 50.0% | |
| TTCCAGCTGCAATCGCTCTA+AGG | + | chr6.3:11492432-11492451 | MS.gene018234:CDS | 50.0% | |
| ! | CACCATGTTGGTGTCCTTGA+AGG | + | chr6.3:11490816-11490835 | MS.gene018234:CDS | 50.0% |
| ! | GGCTGTCCTTATGATAGTGC+TGG | + | chr6.3:11492592-11492611 | MS.gene018234:CDS | 50.0% |
| !! | GATGGTTTGGTGTCCATTGG+TGG | + | chr6.3:11490838-11490857 | MS.gene018234:CDS | 50.0% |
| !! | GGCGGTTTTGTCAAATGCTG+TGG | + | chr6.3:11492613-11492632 | MS.gene018234:CDS | 50.0% |
| !! | TTGGTGTCCATTGGTGGACT+GGG | + | chr6.3:11490844-11490863 | MS.gene018234:CDS | 50.0% |
| !! | TTTGGTGTCCATTGGTGGAC+TGG | + | chr6.3:11490843-11490862 | MS.gene018234:CDS | 50.0% |
| ATGTACGCCCAGTCCACCAA+TGG | - | chr6.3:11490854-11490873 | None:intergenic | 55.0% | |
| CACCTTAGAGCGATTGCAGC+TGG | - | chr6.3:11492437-11492456 | None:intergenic | 55.0% | |
| GAGGATTCCTCACGGATACG+TGG | + | chr6.3:11492008-11492027 | MS.gene018234:CDS | 55.0% | |
| GGATTCCTCACGGATACGTG+GGG | + | chr6.3:11492010-11492029 | MS.gene018234:CDS | 55.0% | |
| TGGGATGCCAAGACTCTTCC+CGG | + | chr6.3:11491387-11491406 | MS.gene018234:CDS | 55.0% | |
| CACAACCCCACGTATCCGTG+AGG | - | chr6.3:11492018-11492037 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 11490253 | 11492682 | 11490253 | ID=MS.gene018234 |
| chr6.3 | mRNA | 11490253 | 11492682 | 11490253 | ID=MS.gene018234.t1;Parent=MS.gene018234 |
| chr6.3 | exon | 11490253 | 11490679 | 11490253 | ID=MS.gene018234.t1.exon1;Parent=MS.gene018234.t1 |
| chr6.3 | CDS | 11490253 | 11490679 | 11490253 | ID=cds.MS.gene018234.t1;Parent=MS.gene018234.t1 |
| chr6.3 | exon | 11490781 | 11490933 | 11490781 | ID=MS.gene018234.t1.exon2;Parent=MS.gene018234.t1 |
| chr6.3 | CDS | 11490781 | 11490933 | 11490781 | ID=cds.MS.gene018234.t1;Parent=MS.gene018234.t1 |
| chr6.3 | exon | 11491287 | 11491490 | 11491287 | ID=MS.gene018234.t1.exon3;Parent=MS.gene018234.t1 |
| chr6.3 | CDS | 11491287 | 11491490 | 11491287 | ID=cds.MS.gene018234.t1;Parent=MS.gene018234.t1 |
| chr6.3 | exon | 11491985 | 11492453 | 11491985 | ID=MS.gene018234.t1.exon4;Parent=MS.gene018234.t1 |
| chr6.3 | CDS | 11491985 | 11492453 | 11491985 | ID=cds.MS.gene018234.t1;Parent=MS.gene018234.t1 |
| chr6.3 | exon | 11492553 | 11492682 | 11492553 | ID=MS.gene018234.t1.exon5;Parent=MS.gene018234.t1 |
| chr6.3 | CDS | 11492553 | 11492682 | 11492553 | ID=cds.MS.gene018234.t1;Parent=MS.gene018234.t1 |
| Gene Sequence |
| Protein sequence |
