Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37165.t1 | RHN50300.1 | 96.1 | 460 | 18 | 0 | 1 | 460 | 1 | 460 | 4.70E-227 | 797 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37165.t1 | Q9LI61 | 64.3 | 414 | 146 | 2 | 23 | 435 | 21 | 433 | 6.6e-145 | 515.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37165.t1 | A0A396HAI1 | 96.1 | 460 | 18 | 0 | 1 | 460 | 1 | 460 | 3.4e-227 | 797.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31156 | MS.gene37165 | PPI |
| MS.gene022024 | MS.gene37165 | PPI |
| MS.gene37165 | MS.gene37173 | PPI |
| MS.gene45489 | MS.gene37165 | PPI |
| MS.gene37165 | MS.gene018234 | PPI |
| MS.gene37165 | MS.gene44762 | PPI |
| MS.gene018235 | MS.gene37165 | PPI |
| MS.gene37165 | MS.gene41176 | PPI |
| MS.gene37165 | MS.gene86947 | PPI |
| MS.gene37165 | MS.gene018243 | PPI |
| MS.gene067430 | MS.gene37165 | PPI |
| MS.gene83556 | MS.gene37165 | PPI |
| MS.gene62008 | MS.gene37165 | PPI |
| MS.gene37165 | MS.gene37166 | PPI |
| MS.gene37165 | MS.gene86432 | PPI |
| MS.gene37165 | MS.gene052122 | PPI |
| MS.gene30955 | MS.gene37165 | PPI |
| MS.gene021114 | MS.gene37165 | PPI |
| MS.gene004045 | MS.gene37165 | PPI |
| MS.gene37165 | MS.gene071169 | PPI |
| MS.gene75991 | MS.gene37165 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37165.t1 | MTR_6g016275 | 95.870 | 460 | 19 | 0 | 1 | 460 | 1 | 460 | 0.0 | 854 |
| MS.gene37165.t1 | MTR_6g016295 | 84.633 | 449 | 68 | 1 | 11 | 458 | 8 | 456 | 0.0 | 754 |
| MS.gene37165.t1 | MTR_6g016245 | 82.965 | 452 | 76 | 1 | 9 | 459 | 4 | 455 | 0.0 | 744 |
| MS.gene37165.t1 | MTR_6g016270 | 80.736 | 462 | 86 | 2 | 1 | 459 | 1 | 462 | 0.0 | 707 |
| MS.gene37165.t1 | MTR_7g017630 | 72.414 | 464 | 122 | 3 | 1 | 459 | 1 | 463 | 0.0 | 681 |
| MS.gene37165.t1 | MTR_6g024240 | 75.556 | 270 | 11 | 2 | 191 | 460 | 38 | 252 | 8.85e-129 | 373 |
| MS.gene37165.t1 | MTR_5g083760 | 43.056 | 432 | 239 | 4 | 27 | 452 | 11 | 441 | 5.61e-126 | 373 |
| MS.gene37165.t1 | MTR_5g083770 | 43.287 | 432 | 235 | 4 | 25 | 454 | 5 | 428 | 5.48e-123 | 365 |
| MS.gene37165.t1 | MTR_3g072110 | 42.237 | 438 | 242 | 5 | 24 | 458 | 9 | 438 | 2.55e-117 | 351 |
| MS.gene37165.t1 | MTR_2g104180 | 44.524 | 420 | 224 | 5 | 43 | 458 | 73 | 487 | 2.57e-113 | 342 |
| MS.gene37165.t1 | MTR_6g016245 | 83.333 | 198 | 33 | 0 | 262 | 459 | 190 | 387 | 2.84e-111 | 334 |
| MS.gene37165.t1 | MTR_6g016245 | 79.032 | 186 | 38 | 1 | 9 | 193 | 4 | 189 | 1.85e-104 | 317 |
| MS.gene37165.t1 | MTR_1396s0010 | 57.519 | 266 | 91 | 2 | 195 | 460 | 1 | 244 | 5.71e-102 | 305 |
| MS.gene37165.t1 | MTR_1396s0010 | 61.194 | 201 | 77 | 1 | 175 | 375 | 1 | 200 | 4.96e-82 | 252 |
| MS.gene37165.t1 | MTR_8g065630 | 49.261 | 203 | 89 | 3 | 11 | 199 | 4 | 206 | 2.37e-52 | 176 |
| MS.gene37165.t1 | MTR_8g065650 | 58.025 | 162 | 67 | 1 | 35 | 195 | 41 | 202 | 2.73e-49 | 178 |
| MS.gene37165.t1 | MTR_0658s0030 | 58.537 | 123 | 50 | 1 | 338 | 460 | 1 | 122 | 2.87e-43 | 149 |
| MS.gene37165.t1 | MTR_3g072105 | 45.333 | 75 | 41 | 0 | 46 | 120 | 23 | 97 | 3.26e-16 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37165.t1 | AT3G30390 | 64.574 | 446 | 154 | 3 | 16 | 458 | 12 | 456 | 0.0 | 582 |
| MS.gene37165.t1 | AT3G30390 | 64.574 | 446 | 154 | 3 | 16 | 458 | 12 | 456 | 0.0 | 582 |
| MS.gene37165.t1 | AT3G30390 | 64.574 | 446 | 154 | 3 | 16 | 458 | 12 | 456 | 0.0 | 582 |
| MS.gene37165.t1 | AT5G38820 | 63.492 | 441 | 157 | 3 | 21 | 458 | 11 | 450 | 0.0 | 571 |
| MS.gene37165.t1 | AT5G38820 | 63.492 | 441 | 157 | 3 | 21 | 458 | 11 | 450 | 0.0 | 571 |
| MS.gene37165.t1 | AT5G38820 | 63.492 | 441 | 157 | 3 | 21 | 458 | 16 | 455 | 0.0 | 571 |
| MS.gene37165.t1 | AT3G56200 | 42.396 | 434 | 243 | 4 | 23 | 454 | 4 | 432 | 3.86e-115 | 345 |
| MS.gene37165.t1 | AT2G40420 | 44.780 | 431 | 233 | 5 | 24 | 452 | 5 | 432 | 3.44e-113 | 340 |
| MS.gene37165.t1 | AT1G80510 | 43.705 | 421 | 227 | 5 | 43 | 458 | 73 | 488 | 3.11e-101 | 311 |
| MS.gene37165.t1 | AT2G41190 | 22.785 | 474 | 314 | 12 | 8 | 459 | 93 | 536 | 1.19e-12 | 70.5 |
| MS.gene37165.t1 | AT5G02180 | 23.214 | 448 | 306 | 13 | 17 | 457 | 131 | 547 | 7.09e-11 | 64.7 |
| MS.gene37165.t1 | AT5G02180 | 23.214 | 448 | 306 | 13 | 17 | 457 | 131 | 547 | 7.09e-11 | 64.7 |
Find 91 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTATTGGTGCTGGAATTA+TGG | 0.156418 | 6.2:+11273522 | MS.gene37165:CDS |
| AATTTATCAACCACAATTAT+TGG | 0.168967 | 6.2:+11273508 | MS.gene37165:CDS |
| TTCTTCCTATGGAAATCTTA+TGG | 0.183008 | 6.2:+11273666 | MS.gene37165:CDS |
| TTCTTTGGGTTCCTACTATT+TGG | 0.194546 | 6.2:+11275209 | MS.gene37165:CDS |
| ACATCACTTTCTTGTGTCTT+AGG | 0.206909 | 6.2:-11273439 | None:intergenic |
| TACTTACTGACAAGCTTCTT+TGG | 0.226981 | 6.2:+11275194 | MS.gene37165:CDS |
| GTTAAGTTTGATGAATTTAA+TGG | 0.259661 | 6.2:+11273460 | MS.gene37165:CDS |
| TTTATAGGGGATGTGATTTC+CGG | 0.274916 | 6.2:+11273867 | MS.gene37165:intron |
| CAAATTTCATACCGAACATT+TGG | 0.283518 | 6.2:+11275483 | MS.gene37165:CDS |
| TCCAAGATCAGTATCAAAAT+TGG | 0.300073 | 6.2:-11275258 | None:intergenic |
| ATTTGCTGTGGTTGCACCTT+TGG | 0.320327 | 6.2:+11273986 | MS.gene37165:CDS |
| ATTATTGGTGCTGGAATTAT+GGG | 0.320496 | 6.2:+11273523 | MS.gene37165:CDS |
| TCTTCCTATGGAAATCTTAT+GGG | 0.321585 | 6.2:+11273667 | MS.gene37165:CDS |
| ATCATGTACATGATCATTAT+TGG | 0.324628 | 6.2:+11273757 | MS.gene37165:CDS |
| CTCAATGCATAGAAAATTAC+AGG | 0.336695 | 6.2:-11275350 | None:intergenic |
| ACTTACTGACAAGCTTCTTT+GGG | 0.347899 | 6.2:+11275195 | MS.gene37165:CDS |
| AGTCAATTGATTTCATAATC+AGG | 0.357461 | 6.2:+11273623 | MS.gene37165:CDS |
| TTTGGTGTCCATTGGTGGAC+TGG | 0.358328 | 6.2:+11273936 | MS.gene37165:CDS |
| TTCCAGCTGCAATCGCTCTA+AGG | 0.372710 | 6.2:+11275558 | MS.gene37165:CDS |
| AATTCCACTTGAAGTTGTTC+CGG | 0.372859 | 6.2:-11273886 | None:intergenic |
| CACCTGTTGCTCCAGTGAAT+TGG | 0.376723 | 6.2:-11275514 | None:intergenic |
| TTCCAATTCACTGGAGCAAC+AGG | 0.378767 | 6.2:+11275512 | MS.gene37165:CDS |
| TTCCTCATCAAGAAGGCCTT+TGG | 0.387053 | 6.2:+11275397 | MS.gene37165:CDS |
| TGGGATGCCAAGACTCTTCC+CGG | 0.388731 | 6.2:+11274504 | MS.gene37165:CDS |
| TTCACGTCTGCATTGTCAAT+TGG | 0.392591 | 6.2:+11274415 | MS.gene37165:CDS |
| AAATTTCATACCGAACATTT+GGG | 0.400729 | 6.2:+11275484 | MS.gene37165:CDS |
| TCAACCACAATTATTGGTGC+TGG | 0.417512 | 6.2:+11273514 | MS.gene37165:CDS |
| AGATTATAAGTGGCGGCATT+GGG | 0.419706 | 6.2:+11274485 | MS.gene37165:CDS |
| TTGGTGTCCATTGGTGGACT+GGG | 0.426711 | 6.2:+11273937 | MS.gene37165:CDS |
| CTTGTTGTCATTATCTTCCT+CGG | 0.427841 | 6.2:+11275458 | MS.gene37165:CDS |
| AAGATTATAAGTGGCGGCAT+TGG | 0.436782 | 6.2:+11274484 | MS.gene37165:CDS |
| AACTAAAACAGATATGATTC+TGG | 0.446854 | 6.2:+11275697 | MS.gene37165:CDS |
| ACTGATCTTGGAATTCCCTT+CGG | 0.448477 | 6.2:+11275269 | MS.gene37165:CDS |
| CACCTTAGAGCGATTGCAGC+TGG | 0.449891 | 6.2:-11275560 | None:intergenic |
| GCAGGGAAACTTTCTTCCTA+TGG | 0.452733 | 6.2:+11273655 | MS.gene37165:CDS |
| AATCTTATGGGAGATGCCTA+TGG | 0.453166 | 6.2:+11273679 | MS.gene37165:CDS |
| GGTGTCCTTGAAGGATGGTT+TGG | 0.463689 | 6.2:+11273918 | MS.gene37165:CDS |
| GGAGATGCCTATGGGAAATA+CGG | 0.474387 | 6.2:+11273688 | MS.gene37165:CDS |
| TTGGTCAGCTTTAAGCGGAT+TGG | 0.477571 | 6.2:+11274005 | MS.gene37165:CDS |
| AAGGATGGTTTGGTGTCCAT+TGG | 0.478302 | 6.2:+11273928 | MS.gene37165:CDS |
| GAACTCCTTCACCAAATAGT+AGG | 0.481003 | 6.2:-11275220 | None:intergenic |
| CACCATGCTGGTGTCCTTGA+AGG | 0.483204 | 6.2:+11273909 | MS.gene37165:CDS |
| GATGGTTTGGTGTCCATTGG+TGG | 0.485337 | 6.2:+11273931 | MS.gene37165:CDS |
| TCAAAGCATAGAGAATGAAC+TGG | 0.495561 | 6.2:+11275112 | MS.gene37165:CDS |
| GAAATACGGAAAAGCGTCGT+TGG | 0.497510 | 6.2:+11273702 | MS.gene37165:CDS |
| GGCTGTCCTTATGATAGTGC+TGG | 0.498510 | 6.2:+11275718 | MS.gene37165:CDS |
| GCATTGAGGTTCAACGTAGA+TGG | 0.498672 | 6.2:+11275365 | MS.gene37165:CDS |
| GGGTTCCTACTATTTGGTGA+AGG | 0.499413 | 6.2:+11275215 | MS.gene37165:CDS |
| AGATACCTACGGCAATGATA+AGG | 0.508676 | 6.2:-11274453 | None:intergenic |
| TGGAAAATAACCCAAATGTT+CGG | 0.513300 | 6.2:-11275494 | None:intergenic |
| GGACACCAAACCATCCTTCA+AGG | 0.514169 | 6.2:-11273923 | None:intergenic |
| ATCATTGAGCGCAGAACCGA+AGG | 0.528664 | 6.2:-11275285 | None:intergenic |
| GTAATCACCGGGAAGAGTCT+TGG | 0.530223 | 6.2:-11274511 | None:intergenic |
| TACTTTCGCAACATTTGCTG+TGG | 0.536955 | 6.2:+11273974 | MS.gene37165:CDS |
| ACACCGACGAGCATAGAGTA+AGG | 0.537017 | 6.2:-11275172 | None:intergenic |
| TCAGTTATCAAGATTATAAG+TGG | 0.540094 | 6.2:+11274475 | MS.gene37165:CDS |
| CACCTTTGGTCAGCTTTAAG+CGG | 0.542192 | 6.2:+11274000 | MS.gene37165:CDS |
| AAACTGCCAGCACTATCATA+AGG | 0.546321 | 6.2:-11275724 | None:intergenic |
| GAAGCTGCATCAGTAATCAC+CGG | 0.568484 | 6.2:-11274523 | None:intergenic |
| ATCTTATGGGAGATGCCTAT+GGG | 0.569099 | 6.2:+11273680 | MS.gene37165:CDS |
| TCTTGTGTCTTAGGTAACAA+AGG | 0.569279 | 6.2:-11273430 | None:intergenic |
| AACCAAAGGCCTTCTTGATG+AGG | 0.573378 | 6.2:-11275399 | None:intergenic |
| CGAGGAAGATAATGACAACA+AGG | 0.577653 | 6.2:-11275457 | None:intergenic |
| ATGTACGCCCAGTCCACCAA+TGG | 0.578995 | 6.2:-11273944 | None:intergenic |
| TTCCCTTACTCTATGCTCGT+CGG | 0.581558 | 6.2:+11275169 | MS.gene37165:CDS |
| ATTTCCGGAACAACTTCAAG+TGG | 0.582092 | 6.2:+11273882 | MS.gene37165:CDS |
| AATTCCAGCACCAATAATTG+TGG | 0.583355 | 6.2:-11273518 | None:intergenic |
| ATGCTGGTGTCCTTGAAGGA+TGG | 0.583854 | 6.2:+11273913 | MS.gene37165:CDS |
| TCAAGTGGAATTCACCATGC+TGG | 0.586016 | 6.2:+11273897 | MS.gene37165:CDS |
| GAGGATTCCTCACGGATACG+TGG | 0.599496 | 6.2:+11275134 | MS.gene37165:CDS |
| AGGATTCCTCACGGATACGT+GGG | 0.602701 | 6.2:+11275135 | MS.gene37165:CDS |
| ACGTATGCTGTCATCAGCAC+AGG | 0.604612 | 6.2:-11274571 | None:intergenic |
| CTTGATAACTGAGATACCTA+CGG | 0.611394 | 6.2:-11274464 | None:intergenic |
| CTGAAGTTATCAACAACCAA+AGG | 0.615882 | 6.2:-11275413 | None:intergenic |
| ATCTCCCATAAGATTTCCAT+AGG | 0.615995 | 6.2:-11273671 | None:intergenic |
| CACCGACGAGCATAGAGTAA+GGG | 0.621195 | 6.2:-11275171 | None:intergenic |
| ATCCTTCAAGGACACCAGCA+TGG | 0.632142 | 6.2:-11273911 | None:intergenic |
| TGAAAAGTGAAAATGACTAG+TGG | 0.635089 | 6.2:+11273340 | None:intergenic |
| AAGCTGCATCAGTAATCACC+GGG | 0.647022 | 6.2:-11274522 | None:intergenic |
| ATCCGCTTAAAGCTGACCAA+AGG | 0.647778 | 6.2:-11274002 | None:intergenic |
| GTTATCAAGATTATAAGTGG+CGG | 0.648299 | 6.2:+11274478 | MS.gene37165:CDS |
| AAGCATAGAGAATGAACTGG+AGG | 0.650959 | 6.2:+11275115 | MS.gene37165:CDS |
| ATGAACTGGAGGATTCCTCA+CGG | 0.655141 | 6.2:+11275126 | MS.gene37165:CDS |
| GTACATGATCAGACTACCAA+TGG | 0.660911 | 6.2:-11273743 | None:intergenic |
| GGATTCCTCACGGATACGTG+GGG | 0.661899 | 6.2:+11275136 | MS.gene37165:CDS |
| TCATTGAGCGCAGAACCGAA+GGG | 0.672577 | 6.2:-11275284 | None:intergenic |
| GAGGAAGATAATGACAACAA+GGG | 0.679413 | 6.2:-11275456 | None:intergenic |
| TCGGTATGAAATTTGCTCCG+AGG | 0.700660 | 6.2:-11275475 | None:intergenic |
| AGAACTATGACAATAAGACC+AGG | 0.702162 | 6.2:-11273580 | None:intergenic |
| GCATACGTATGTCACTACAA+TGG | 0.710732 | 6.2:+11274586 | MS.gene37165:CDS |
| CACAACCCCACGTATCCGTG+AGG | 0.715105 | 6.2:-11275141 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTGATTTTCAGATTATTT+TGG | + | chr6.2:11274799-11274818 | MS.gene37165:intron | 15.0% |
| !!! | TGTTTTTGTTTGTATTTATA+GGG | + | chr6.2:11273853-11273872 | MS.gene37165:intron | 15.0% |
| !!! | TTGTTTTTGTTTGTATTTAT+AGG | + | chr6.2:11273852-11273871 | MS.gene37165:intron | 15.0% |
| !!! | TTTTCTTTTCTTGTATTAAT+TGG | + | chr6.2:11274036-11274055 | MS.gene37165:intron | 15.0% |
| !! | AATTTATCAACCACAATTAT+TGG | + | chr6.2:11273508-11273527 | MS.gene37165:CDS | 20.0% |
| !! | CGTTTGTAAATTAAGAAAAA+TGG | + | chr6.2:11274170-11274189 | MS.gene37165:intron | 20.0% |
| !! | GTTAAGTTTGATGAATTTAA+TGG | + | chr6.2:11273460-11273479 | MS.gene37165:CDS | 20.0% |
| !! | TATCATTAGAGAAGAATTTA+AGG | + | chr6.2:11273814-11273833 | MS.gene37165:intron | 20.0% |
| !! | TGCTTCATAGATTTATTATA+TGG | + | chr6.2:11275059-11275078 | MS.gene37165:intron | 20.0% |
| !! | TTAATTTACAAACGATGAAA+TGG | - | chr6.2:11274164-11274183 | None:intergenic | 20.0% |
| !!! | GATTGATAGTATATATTTTG+TGG | + | chr6.2:11274909-11274928 | MS.gene37165:intron | 20.0% |
| !!! | GTTTTTGTTTGTATTTATAG+GGG | + | chr6.2:11273854-11273873 | MS.gene37165:intron | 20.0% |
| !!! | TAGTATATATTTTGTGGTTT+AGG | + | chr6.2:11274915-11274934 | MS.gene37165:intron | 20.0% |
| ! | AAAGTCTAGACTTAAGAATA+TGG | - | chr6.2:11273788-11273807 | None:intergenic | 25.0% |
| ! | AAATTTCATACCGAACATTT+GGG | + | chr6.2:11275484-11275503 | MS.gene37165:CDS | 25.0% |
| ! | AACTAAAACAGATATGATTC+TGG | + | chr6.2:11275697-11275716 | MS.gene37165:CDS | 25.0% |
| ! | AGACTTGTATAATTGTAAGT+TGG | + | chr6.2:11274657-11274676 | MS.gene37165:intron | 25.0% |
| ! | ATCATGTACATGATCATTAT+TGG | + | chr6.2:11273757-11273776 | MS.gene37165:CDS | 25.0% |
| ! | GATTTGCATGAAGAATATTA+TGG | + | chr6.2:11274685-11274704 | MS.gene37165:intron | 25.0% |
| ! | TCAGTTATCAAGATTATAAG+TGG | + | chr6.2:11274475-11274494 | MS.gene37165:CDS | 25.0% |
| ! | TCATAAAAAATTGACACAGA+TGG | - | chr6.2:11274773-11274792 | None:intergenic | 25.0% |
| !! | AGTCAATTGATTTCATAATC+AGG | + | chr6.2:11273623-11273642 | MS.gene37165:CDS | 25.0% |
| !! | ATTTCATAATCAGGTTTTCT+AGG | + | chr6.2:11273632-11273651 | MS.gene37165:CDS | 25.0% |
| !! | ATTTGGAATTGATGCTTATT+TGG | + | chr6.2:11274232-11274251 | MS.gene37165:intron | 25.0% |
| !! | TTTCATAATCAGGTTTTCTA+GGG | + | chr6.2:11273633-11273652 | MS.gene37165:CDS | 25.0% |
| !!! | AAGTTTTGTTGCAACTTATT+TGG | + | chr6.2:11274322-11274341 | MS.gene37165:intron | 25.0% |
| !!! | ATATGTGTTTTAAGTACCAT+TGG | + | chr6.2:11273727-11273746 | MS.gene37165:CDS | 25.0% |
| !!! | GCTTGATAGTATATATTTTG+TGG | + | chr6.2:11274945-11274964 | MS.gene37165:intron | 25.0% |
| !!! | GTATAATTGTAAGTTGGTTA+TGG | + | chr6.2:11274663-11274682 | MS.gene37165:intron | 25.0% |
| AAACAACTAGTTAGTACACA+TGG | + | chr6.2:11274207-11274226 | MS.gene37165:intron | 30.0% | |
| AAATCTATGAAGCAAACAAG+TGG | - | chr6.2:11275053-11275072 | None:intergenic | 30.0% | |
| AGTTAGTACACATGGTTATT+TGG | + | chr6.2:11274215-11274234 | MS.gene37165:intron | 30.0% | |
| ATTTGGTACACGAGATTATT+TGG | + | chr6.2:11274249-11274268 | MS.gene37165:intron | 30.0% | |
| CAAATTTCATACCGAACATT+TGG | + | chr6.2:11275483-11275502 | MS.gene37165:CDS | 30.0% | |
| CTCAATGCATAGAAAATTAC+AGG | - | chr6.2:11275353-11275372 | None:intergenic | 30.0% | |
| GTTATCAAGATTATAAGTGG+CGG | + | chr6.2:11274478-11274497 | MS.gene37165:CDS | 30.0% | |
| TCCAAGATCAGTATCAAAAT+TGG | - | chr6.2:11275261-11275280 | None:intergenic | 30.0% | |
| TCTTCCTATGGAAATCTTAT+GGG | + | chr6.2:11273667-11273686 | MS.gene37165:CDS | 30.0% | |
| TGGAAAATAACCCAAATGTT+CGG | - | chr6.2:11275497-11275516 | None:intergenic | 30.0% | |
| TTCCACGTACTAATAAACAT+CGG | + | chr6.2:11274985-11275004 | MS.gene37165:intron | 30.0% | |
| TTCTTCCTATGGAAATCTTA+TGG | + | chr6.2:11273666-11273685 | MS.gene37165:CDS | 30.0% | |
| TTGCAAAAGTTTCAGTTATG+CGG | + | chr6.2:11275014-11275033 | MS.gene37165:intron | 30.0% | |
| ! | AAGCATTTTCTTTTCCTACA+GGG | + | chr6.2:11275658-11275677 | MS.gene37165:intron | 30.0% |
| ! | CTGTAATTTTCTATGCATTG+AGG | + | chr6.2:11275351-11275370 | MS.gene37165:CDS | 30.0% |
| ! | TAAGCATTTTCTTTTCCTAC+AGG | + | chr6.2:11275657-11275676 | MS.gene37165:intron | 30.0% |
| ! | TATATTTTGTGGTTTAGGCT+TGG | + | chr6.2:11274920-11274939 | MS.gene37165:intron | 30.0% |
| ! | TGATATTTTCCTCATCAAGA+AGG | + | chr6.2:11275390-11275409 | MS.gene37165:CDS | 30.0% |
| ! | TTTAATGGAGCTTCATTTTC+TGG | + | chr6.2:11273475-11273494 | MS.gene37165:CDS | 30.0% |
| ! | TTTTTCACTCGAGTACAAAT+TGG | + | chr6.2:11274284-11274303 | MS.gene37165:intron | 30.0% |
| !! | AATTATTGGTGCTGGAATTA+TGG | + | chr6.2:11273522-11273541 | MS.gene37165:CDS | 30.0% |
| !! | AGGCAGTGTTTTTATATACT+TGG | + | chr6.2:11274854-11274873 | MS.gene37165:intron | 30.0% |
| !! | ATTATTGGTGCTGGAATTAT+GGG | + | chr6.2:11273523-11273542 | MS.gene37165:CDS | 30.0% |
| !! | TTTGTCATAGAAGTGTTACA+TGG | - | chr6.2:11274355-11274374 | None:intergenic | 30.0% |
| !! | TTTTCAGATTAGTTGGACAT+GGG | - | chr6.2:11274746-11274765 | None:intergenic | 30.0% |
| !!! | GATTTTTTCTTCTCAGCATT+AGG | - | chr6.2:11273376-11273395 | None:intergenic | 30.0% |
| !!! | TGGTTACTTTTCAGATTAGT+TGG | - | chr6.2:11274753-11274772 | None:intergenic | 30.0% |
| AAATTTAGCTGCATTCTCTG+TGG | + | chr6.2:11274372-11274391 | MS.gene37165:intron | 35.0% | |
| AATTCCACTTGAAGTTGTTC+CGG | - | chr6.2:11273889-11273908 | None:intergenic | 35.0% | |
| AATTCCAGCACCAATAATTG+TGG | - | chr6.2:11273521-11273540 | None:intergenic | 35.0% | |
| ACATCACTTTCTTGTGTCTT+AGG | - | chr6.2:11273442-11273461 | None:intergenic | 35.0% | |
| ACTTACTGACAAGCTTCTTT+GGG | + | chr6.2:11275195-11275214 | MS.gene37165:CDS | 35.0% | |
| AGAACTATGACAATAAGACC+AGG | - | chr6.2:11273583-11273602 | None:intergenic | 35.0% | |
| AGTCGTATCATTTACCGAAA+CGG | + | chr6.2:11274078-11274097 | MS.gene37165:intron | 35.0% | |
| ATCTCCCATAAGATTTCCAT+AGG | - | chr6.2:11273674-11273693 | None:intergenic | 35.0% | |
| ATGTGTGAAAAAGTTAGGGA+TGG | + | chr6.2:11273555-11273574 | MS.gene37165:CDS | 35.0% | |
| CGAGTGAAAAAAGTGAGTAT+TGG | - | chr6.2:11274275-11274294 | None:intergenic | 35.0% | |
| CTGAAGTTATCAACAACCAA+AGG | - | chr6.2:11275416-11275435 | None:intergenic | 35.0% | |
| CTGCATGTGTGAAAAAGTTA+GGG | + | chr6.2:11273551-11273570 | MS.gene37165:CDS | 35.0% | |
| GAGGAAGATAATGACAACAA+GGG | - | chr6.2:11275459-11275478 | None:intergenic | 35.0% | |
| GTGCATCATTAGTCAAAACA+CGG | + | chr6.2:11274824-11274843 | MS.gene37165:intron | 35.0% | |
| TACTTACTGACAAGCTTCTT+TGG | + | chr6.2:11275194-11275213 | MS.gene37165:CDS | 35.0% | |
| TCAAAGCATAGAGAATGAAC+TGG | + | chr6.2:11275112-11275131 | MS.gene37165:CDS | 35.0% | |
| TCTTGTGTCTTAGGTAACAA+AGG | - | chr6.2:11273433-11273452 | None:intergenic | 35.0% | |
| TGCAAAAGTTTCAGTTATGC+GGG | + | chr6.2:11275015-11275034 | MS.gene37165:intron | 35.0% | |
| TTTATAGGGGATGTGATTTC+CGG | + | chr6.2:11273867-11273886 | MS.gene37165:intron | 35.0% | |
| TTTGAGTCATCTTCCTAACA+TGG | - | chr6.2:11274110-11274129 | None:intergenic | 35.0% | |
| ! | CTTGATAACTGAGATACCTA+CGG | - | chr6.2:11274467-11274486 | None:intergenic | 35.0% |
| ! | CTTGTTGTCATTATCTTCCT+CGG | + | chr6.2:11275458-11275477 | MS.gene37165:CDS | 35.0% |
| ! | TTCTTTGGGTTCCTACTATT+TGG | + | chr6.2:11275209-11275228 | MS.gene37165:CDS | 35.0% |
| !! | CTTTTCAGATTAGTTGGACA+TGG | - | chr6.2:11274747-11274766 | None:intergenic | 35.0% |
| !! | GCCAATTTTGATACTGATCT+TGG | + | chr6.2:11275257-11275276 | MS.gene37165:CDS | 35.0% |
| !! | TGGGTTATTTTCCAATTCAC+TGG | + | chr6.2:11275503-11275522 | MS.gene37165:CDS | 35.0% |
| AAAAGTTTCAGTTATGCGGG+AGG | + | chr6.2:11275018-11275037 | MS.gene37165:intron | 40.0% | |
| AAACTGCCAGCACTATCATA+AGG | - | chr6.2:11275727-11275746 | None:intergenic | 40.0% | |
| AAGATTATAAGTGGCGGCAT+TGG | + | chr6.2:11274484-11274503 | MS.gene37165:CDS | 40.0% | |
| AAGCATAGAGAATGAACTGG+AGG | + | chr6.2:11275115-11275134 | MS.gene37165:CDS | 40.0% | |
| AATCTTATGGGAGATGCCTA+TGG | + | chr6.2:11273679-11273698 | MS.gene37165:CDS | 40.0% | |
| ACTGATCTTGGAATTCCCTT+CGG | + | chr6.2:11275269-11275288 | MS.gene37165:CDS | 40.0% | |
| AGATACCTACGGCAATGATA+AGG | - | chr6.2:11274456-11274475 | None:intergenic | 40.0% | |
| AGATTATAAGTGGCGGCATT+GGG | + | chr6.2:11274485-11274504 | MS.gene37165:CDS | 40.0% | |
| AGTCAAAACACGGAACACTA+AGG | + | chr6.2:11274834-11274853 | MS.gene37165:intron | 40.0% | |
| ATCTTATGGGAGATGCCTAT+GGG | + | chr6.2:11273680-11273699 | MS.gene37165:CDS | 40.0% | |
| ATGGGATGAGGTAATGCTTA+TGG | - | chr6.2:11274728-11274747 | None:intergenic | 40.0% | |
| ATTTCCGGAACAACTTCAAG+TGG | + | chr6.2:11273882-11273901 | MS.gene37165:CDS | 40.0% | |
| CCTGCATGTGTGAAAAAGTT+AGG | + | chr6.2:11273550-11273569 | MS.gene37165:CDS | 40.0% | |
| CGAGGAAGATAATGACAACA+AGG | - | chr6.2:11275460-11275479 | None:intergenic | 40.0% | |
| GAACTCCTTCACCAAATAGT+AGG | - | chr6.2:11275223-11275242 | None:intergenic | 40.0% | |
| GCATACGTATGTCACTACAA+TGG | + | chr6.2:11274586-11274605 | MS.gene37165:CDS | 40.0% | |
| GTACATGATCAGACTACCAA+TGG | - | chr6.2:11273746-11273765 | None:intergenic | 40.0% | |
| TCAACCACAATTATTGGTGC+TGG | + | chr6.2:11273514-11273533 | MS.gene37165:CDS | 40.0% | |
| TCGGTCACTGAATTCATACA+GGG | + | chr6.2:11275586-11275605 | MS.gene37165:intron | 40.0% | |
| TGCCGATGTTTATTAGTACG+TGG | - | chr6.2:11274990-11275009 | None:intergenic | 40.0% | |
| TTCACGTCTGCATTGTCAAT+TGG | + | chr6.2:11274415-11274434 | MS.gene37165:CDS | 40.0% | |
| TTCGGTCACTGAATTCATAC+AGG | + | chr6.2:11275585-11275604 | MS.gene37165:intron | 40.0% | |
| ! | CTTTTCCTTATCATTGCCGT+AGG | + | chr6.2:11274448-11274467 | MS.gene37165:CDS | 40.0% |
| ! | TACTTTCGCAACATTTGCTG+TGG | + | chr6.2:11273974-11273993 | MS.gene37165:CDS | 40.0% |
| ! | TATGTTGTATCGATCCCTGT+AGG | - | chr6.2:11275675-11275694 | None:intergenic | 40.0% |
| !!! | ATAATCAGGTTTTCTAGGGC+AGG | + | chr6.2:11273637-11273656 | MS.gene37165:CDS | 40.0% |
| !!! | CCTAACTTTTTCACACATGC+AGG | - | chr6.2:11273553-11273572 | None:intergenic | 40.0% |
| !!! | TAATCAGGTTTTCTAGGGCA+GGG | + | chr6.2:11273638-11273657 | MS.gene37165:CDS | 40.0% |
| AAAAAGTTAGGGATGGTGCC+TGG | + | chr6.2:11273562-11273581 | MS.gene37165:CDS | 45.0% | |
| AACCAAAGGCCTTCTTGATG+AGG | - | chr6.2:11275402-11275421 | None:intergenic | 45.0% | |
| AAGATGACTCAAACGCTGGA+CGG | + | chr6.2:11274117-11274136 | MS.gene37165:intron | 45.0% | |
| AAGCTGCATCAGTAATCACC+GGG | - | chr6.2:11274525-11274544 | None:intergenic | 45.0% | |
| ATCCGCTTAAAGCTGACCAA+AGG | - | chr6.2:11274005-11274024 | None:intergenic | 45.0% | |
| ATGAACTGGAGGATTCCTCA+CGG | + | chr6.2:11275126-11275145 | MS.gene37165:CDS | 45.0% | |
| GAAGCTGCATCAGTAATCAC+CGG | - | chr6.2:11274526-11274545 | None:intergenic | 45.0% | |
| GCAGGGAAACTTTCTTCCTA+TGG | + | chr6.2:11273655-11273674 | MS.gene37165:CDS | 45.0% | |
| GCATTGAGGTTCAACGTAGA+TGG | + | chr6.2:11275365-11275384 | MS.gene37165:CDS | 45.0% | |
| GGAGATGCCTATGGGAAATA+CGG | + | chr6.2:11273688-11273707 | MS.gene37165:CDS | 45.0% | |
| TAACATGGTCGTCTCCGTTT+CGG | - | chr6.2:11274095-11274114 | None:intergenic | 45.0% | |
| TAGGAAGATGACTCAAACGC+TGG | + | chr6.2:11274113-11274132 | MS.gene37165:intron | 45.0% | |
| TAGTACGTGGAATCAGCTTG+TGG | - | chr6.2:11274977-11274996 | None:intergenic | 45.0% | |
| TCAAGTGGAATTCACCATGC+TGG | + | chr6.2:11273897-11273916 | MS.gene37165:CDS | 45.0% | |
| TTCCAATTCACTGGAGCAAC+AGG | + | chr6.2:11275512-11275531 | MS.gene37165:CDS | 45.0% | |
| TTCCCTTACTCTATGCTCGT+CGG | + | chr6.2:11275169-11275188 | MS.gene37165:CDS | 45.0% | |
| TTCCTCATCAAGAAGGCCTT+TGG | + | chr6.2:11275397-11275416 | MS.gene37165:CDS | 45.0% | |
| ! | CGCTTTTCCGTATTTCCCAT+AGG | - | chr6.2:11273698-11273717 | None:intergenic | 45.0% |
| ! | GATTAGTTGGACATGGGATG+AGG | - | chr6.2:11274740-11274759 | None:intergenic | 45.0% |
| ! | GGGTTCCTACTATTTGGTGA+AGG | + | chr6.2:11275215-11275234 | MS.gene37165:CDS | 45.0% |
| ! | TCGGTATGAAATTTGCTCCG+AGG | - | chr6.2:11275478-11275497 | None:intergenic | 45.0% |
| !! | AAGGATGGTTTGGTGTCCAT+TGG | + | chr6.2:11273928-11273947 | MS.gene37165:CDS | 45.0% |
| !! | ATTTGCTGTGGTTGCACCTT+TGG | + | chr6.2:11273986-11274005 | MS.gene37165:CDS | 45.0% |
| !! | CAATCGCTCTAAGGTGAGTT+CGG | + | chr6.2:11275567-11275586 | MS.gene37165:intron | 45.0% |
| !! | CACCTTTGGTCAGCTTTAAG+CGG | + | chr6.2:11274000-11274019 | MS.gene37165:CDS | 45.0% |
| !! | GAAATACGGAAAAGCGTCGT+TGG | + | chr6.2:11273702-11273721 | MS.gene37165:CDS | 45.0% |
| !! | GGCAGTTTTGTCAAATGCTG+TGG | + | chr6.2:11275739-11275758 | MS.gene37165:CDS | 45.0% |
| !! | TTGGTCAGCTTTAAGCGGAT+TGG | + | chr6.2:11274005-11274024 | MS.gene37165:CDS | 45.0% |
| ACACCGACGAGCATAGAGTA+AGG | - | chr6.2:11275175-11275194 | None:intergenic | 50.0% | |
| ACGTATGCTGTCATCAGCAC+AGG | - | chr6.2:11274574-11274593 | None:intergenic | 50.0% | |
| ACTCAAACGCTGGACGGTAA+TGG | + | chr6.2:11274123-11274142 | MS.gene37165:intron | 50.0% | |
| AGGATTCCTCACGGATACGT+GGG | + | chr6.2:11275135-11275154 | MS.gene37165:CDS | 50.0% | |
| ATCATTGAGCGCAGAACCGA+AGG | - | chr6.2:11275288-11275307 | None:intergenic | 50.0% | |
| ATCCTTCAAGGACACCAGCA+TGG | - | chr6.2:11273914-11273933 | None:intergenic | 50.0% | |
| ATGCTGGTGTCCTTGAAGGA+TGG | + | chr6.2:11273913-11273932 | MS.gene37165:CDS | 50.0% | |
| CACCGACGAGCATAGAGTAA+GGG | - | chr6.2:11275174-11275193 | None:intergenic | 50.0% | |
| CACCTGTTGCTCCAGTGAAT+TGG | - | chr6.2:11275517-11275536 | None:intergenic | 50.0% | |
| GAAACGGAGACGACCATGTT+AGG | + | chr6.2:11274094-11274113 | MS.gene37165:intron | 50.0% | |
| GGACACCAAACCATCCTTCA+AGG | - | chr6.2:11273926-11273945 | None:intergenic | 50.0% | |
| GGTGTCCTTGAAGGATGGTT+TGG | + | chr6.2:11273918-11273937 | MS.gene37165:CDS | 50.0% | |
| GTAATCACCGGGAAGAGTCT+TGG | - | chr6.2:11274514-11274533 | None:intergenic | 50.0% | |
| TCATTGAGCGCAGAACCGAA+GGG | - | chr6.2:11275287-11275306 | None:intergenic | 50.0% | |
| TTCCAGCTGCAATCGCTCTA+AGG | + | chr6.2:11275558-11275577 | MS.gene37165:CDS | 50.0% | |
| ! | AACGCTGGACGGTAATGGTA+TGG | + | chr6.2:11274128-11274147 | MS.gene37165:intron | 50.0% |
| ! | GGCTGTCCTTATGATAGTGC+TGG | + | chr6.2:11275718-11275737 | MS.gene37165:CDS | 50.0% |
| !! | GATGGTTTGGTGTCCATTGG+TGG | + | chr6.2:11273931-11273950 | MS.gene37165:CDS | 50.0% |
| !! | TTGGTGTCCATTGGTGGACT+GGG | + | chr6.2:11273937-11273956 | MS.gene37165:CDS | 50.0% |
| !! | TTTGGTGTCCATTGGTGGAC+TGG | + | chr6.2:11273936-11273955 | MS.gene37165:CDS | 50.0% |
| ATGTACGCCCAGTCCACCAA+TGG | - | chr6.2:11273947-11273966 | None:intergenic | 55.0% | |
| CACCATGCTGGTGTCCTTGA+AGG | + | chr6.2:11273909-11273928 | MS.gene37165:CDS | 55.0% | |
| CACCTTAGAGCGATTGCAGC+TGG | - | chr6.2:11275563-11275582 | None:intergenic | 55.0% | |
| GAGGATTCCTCACGGATACG+TGG | + | chr6.2:11275134-11275153 | MS.gene37165:CDS | 55.0% | |
| GGATTCCTCACGGATACGTG+GGG | + | chr6.2:11275136-11275155 | MS.gene37165:CDS | 55.0% | |
| TGGGATGCCAAGACTCTTCC+CGG | + | chr6.2:11274504-11274523 | MS.gene37165:CDS | 55.0% | |
| CACAACCCCACGTATCCGTG+AGG | - | chr6.2:11275144-11275163 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 11273352 | 11275808 | 11273352 | ID=MS.gene37165 |
| chr6.2 | mRNA | 11273352 | 11275808 | 11273352 | ID=MS.gene37165.t1;Parent=MS.gene37165 |
| chr6.2 | exon | 11273352 | 11273778 | 11273352 | ID=MS.gene37165.t1.exon1;Parent=MS.gene37165.t1 |
| chr6.2 | CDS | 11273352 | 11273778 | 11273352 | ID=cds.MS.gene37165.t1;Parent=MS.gene37165.t1 |
| chr6.2 | exon | 11273874 | 11274026 | 11273874 | ID=MS.gene37165.t1.exon2;Parent=MS.gene37165.t1 |
| chr6.2 | CDS | 11273874 | 11274026 | 11273874 | ID=cds.MS.gene37165.t1;Parent=MS.gene37165.t1 |
| chr6.2 | exon | 11274404 | 11274607 | 11274404 | ID=MS.gene37165.t1.exon3;Parent=MS.gene37165.t1 |
| chr6.2 | CDS | 11274404 | 11274607 | 11274404 | ID=cds.MS.gene37165.t1;Parent=MS.gene37165.t1 |
| chr6.2 | exon | 11275111 | 11275579 | 11275111 | ID=MS.gene37165.t1.exon4;Parent=MS.gene37165.t1 |
| chr6.2 | CDS | 11275111 | 11275579 | 11275111 | ID=cds.MS.gene37165.t1;Parent=MS.gene37165.t1 |
| chr6.2 | exon | 11275679 | 11275808 | 11275679 | ID=MS.gene37165.t1.exon5;Parent=MS.gene37165.t1 |
| chr6.2 | CDS | 11275679 | 11275808 | 11275679 | ID=cds.MS.gene37165.t1;Parent=MS.gene37165.t1 |
| Gene Sequence |
| Protein sequence |
