AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene83674

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83674.t1 MTR_0022s0300 97.778 180 4 0 11 190 2 181 1.08e-128 359
MS.gene83674.t1 MTR_1g100747 53.289 152 66 2 11 162 2 148 4.05e-46 149
MS.gene83674.t1 MTR_1g100747 52.632 152 67 2 11 162 16 162 3.03e-45 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene83674.t1 AT5G52200 44.944 178 95 1 10 184 5 182 7.39e-34 119

Find 47 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTCCTTTACCGGTTTC+AGG 0.124430 6.3:-52687213 None:intergenic
ACATTTCTTCTCTCCTTTAC+CGG 0.293779 6.3:-52687220 None:intergenic
CATCACAAGTTGAAGCAATA+TGG 0.331820 6.3:+52686295 MS.gene83674:CDS
ATAGGATGATATGGAGTCTT+AGG 0.348637 6.3:-52685735 None:intergenic
AAGTGATAGTGTAAAAGAAA+TGG 0.409649 6.3:+52687257 MS.gene83674:CDS
TCTTCCACACCTCCGGCTAA+TGG 0.415008 6.3:+52687297 MS.gene83674:CDS
AGAGGCACTGGACAATCATT+TGG 0.420788 6.3:+52686351 MS.gene83674:CDS
TCATCAATCATAGGATGATA+TGG 0.442207 6.3:-52685744 None:intergenic
CTTTAAGATATTCATCATAG+TGG 0.449049 6.3:-52687131 None:intergenic
ATACAGTCGTCATCAATCAT+AGG 0.479820 6.3:-52685753 None:intergenic
TGTAAAAGAAATGGACATTG+AGG 0.485111 6.3:+52687266 MS.gene83674:CDS
GTAAAAGAAATGGACATTGA+GGG 0.487906 6.3:+52687267 MS.gene83674:CDS
GCATCAAAACTTCCTCGTAC+AGG 0.491468 6.3:-52686249 None:intergenic
TGAGGATGAGCTAGAATCAA+TGG 0.510657 6.3:+52686386 MS.gene83674:CDS
CATCAAAACTTCCTCGTACA+GGG 0.511390 6.3:-52686248 None:intergenic
GAGGATGATAATCCTGAAAC+CGG 0.518182 6.3:+52687201 MS.gene83674:CDS
CACATTGTAGGGGACGTGTA+AGG 0.527184 6.3:+52685649 MS.gene83674:intron
GCACTGGACAATCATTTGGT+TGG 0.537763 6.3:+52686355 MS.gene83674:CDS
ATTGTTTACGAACCATTAGC+CGG 0.541254 6.3:-52687309 None:intergenic
TGGACTGCTCTGAGTGATGT+AGG 0.549752 6.3:+52686315 MS.gene83674:CDS
TCTAGTAGCAAAAGAGGCAC+TGG 0.550423 6.3:+52686339 MS.gene83674:CDS
GTAGGCTCTAGTAGCAAAAG+AGG 0.550425 6.3:+52686333 MS.gene83674:CDS
TTACTTTCTCTTATCTACTC+CGG 0.552525 6.3:-52685031 None:intergenic
TTTAAGATATTCATCATAGT+GGG 0.553578 6.3:-52687130 None:intergenic
ACAAAAGAGTTCTAATGTTG+AGG 0.554022 6.3:+52687167 MS.gene83674:CDS
GATAATCCTGAAACCGGTAA+AGG 0.558250 6.3:+52687207 MS.gene83674:CDS
GGCTAACATTGGAGAAATTG+AGG 0.562179 6.3:+52685680 MS.gene83674:CDS
ACACTATCACTTAGGGAACA+TGG 0.564813 6.3:-52687246 None:intergenic
GTTAAGATTCTGAAACAGAT+CGG 0.571036 6.3:+52687079 MS.gene83674:intron
GGGACGTGTAAGGTGGGATG+AGG 0.575577 6.3:+52685659 MS.gene83674:CDS
AAAGTTTAGAAAGCACAGAA+AGG 0.577177 6.3:+52687107 MS.gene83674:CDS
CGAACCATTAGCCGGAGGTG+TGG 0.579849 6.3:-52687301 None:intergenic
CCGCCAATGTTACATCTGAC+CGG 0.587933 6.3:+52685012 None:intergenic
ATTGTAGGGGACGTGTAAGG+TGG 0.592991 6.3:+52685652 MS.gene83674:intron
TAAAAGAAATGGACATTGAG+GGG 0.608985 6.3:+52687268 MS.gene83674:CDS
ATTTGGTTGGACATCGTCTG+AGG 0.609587 6.3:+52686368 MS.gene83674:CDS
ATCAAAACTTCCTCGTACAG+GGG 0.616697 6.3:-52686247 None:intergenic
AGGTGGGATGAGGCTAACAT+TGG 0.618920 6.3:+52685669 MS.gene83674:CDS
TTGTAGGGGACGTGTAAGGT+GGG 0.629712 6.3:+52685653 MS.gene83674:intron
ACTCCGGTCAGATGTAACAT+TGG 0.636292 6.3:-52685015 None:intergenic
CTAGAATCAATGGAACAAGA+TGG 0.652896 6.3:+52686396 MS.gene83674:CDS
TCAATGGAACAAGATGGTGG+TGG 0.668726 6.3:+52686402 MS.gene83674:CDS
GAATCAATGGAACAAGATGG+TGG 0.691362 6.3:+52686399 MS.gene83674:CDS
GGTTCTCTATCCCCTGTACG+AGG 0.694449 6.3:+52686237 MS.gene83674:intron
GTTTACGAACCATTAGCCGG+AGG 0.709220 6.3:-52687306 None:intergenic
TTGAGGCAAACAAACCTGTG+AGG 0.736164 6.3:+52685697 MS.gene83674:CDS
TGTTGAGGATGAGAGTGACG+AGG 0.736227 6.3:+52687182 MS.gene83674:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAGTTAAGAATTATAATA+TGG + chr6.3:52686738-52686757 MS.gene83674:intron 15.0%
!! ACTTGAATAATACTTATATA+CGG + chr6.3:52686918-52686937 MS.gene83674:intron 15.0%
!! ATATGATATATTACTTAAAC+AGG + chr6.3:52685853-52685872 MS.gene83674:intron 15.0%
!! CATCAAATTAAAGAAAAAAA+AGG + chr6.3:52685255-52685274 MS.gene83674:intron 15.0%
!! TACATAATTATAGAATGATA+TGG - chr6.3:52685482-52685501 None:intergenic 15.0%
!! TATGATATATTACTTAAACA+GGG + chr6.3:52685854-52685873 MS.gene83674:intron 15.0%
!!! TCAATATTATGCTTTTATAT+TGG - chr6.3:52686579-52686598 None:intergenic 15.0%
!! AAGAATTATAATATGGTGAA+GGG + chr6.3:52686745-52686764 MS.gene83674:intron 20.0%
!! TAAGAATTATAATATGGTGA+AGG + chr6.3:52686744-52686763 MS.gene83674:intron 20.0%
!! TACTATAGAAACATTCAAAA+TGG + chr6.3:52685378-52685397 MS.gene83674:intron 20.0%
!! TTTCTTACTTGAAATTTCTT+TGG + chr6.3:52687045-52687064 MS.gene83674:intron 20.0%
!!! CTATATTCTTTTTTTTCTGA+TGG - chr6.3:52686042-52686061 None:intergenic 20.0%
!!! TGTTTCTATAGTATAGTATA+TGG - chr6.3:52685371-52685390 None:intergenic 20.0%
!!! TTTAAGATATTCATCATAGT+GGG - chr6.3:52687133-52687152 None:intergenic 20.0%
!!! TTTGTTCTGAGATAATATTT+TGG + chr6.3:52686193-52686212 MS.gene83674:intron 20.0%
! AATGAAATGAATCTCACATT+TGG + chr6.3:52685623-52685642 MS.gene83674:intron 25.0%
! ATATATTACTTAAACAGGGA+AGG + chr6.3:52685858-52685877 MS.gene83674:intron 25.0%
! TAAAACCAAAATTCTCATGA+AGG - chr6.3:52686638-52686657 None:intergenic 25.0%
! TAATTATGACATTTCTGCAT+AGG + chr6.3:52686811-52686830 MS.gene83674:intron 25.0%
! TATTACCTTAATTAACCTAG+TGG + chr6.3:52686710-52686729 MS.gene83674:intron 25.0%
! TTACTTGAAATTTCTTTGGT+TGG + chr6.3:52687049-52687068 MS.gene83674:intron 25.0%
! TTGGCATGAATTTATAAAGA+TGG + chr6.3:52686510-52686529 MS.gene83674:intron 25.0%
!! AAGTGATAGTGTAAAAGAAA+TGG + chr6.3:52687257-52687276 MS.gene83674:CDS 25.0%
!! AATTTTCCTTTGGACTAAAA+GGG - chr6.3:52685141-52685160 None:intergenic 25.0%
!! AGTTATCATGAATTTTCCTT+TGG - chr6.3:52685151-52685170 None:intergenic 25.0%
!! CATATTTCTGTCTGATTATT+GGG + chr6.3:52686452-52686471 MS.gene83674:intron 25.0%
!! TCATATTTCTGTCTGATTAT+TGG + chr6.3:52686451-52686470 MS.gene83674:intron 25.0%
!! TTATAGAATGATATGGACTA+TGG - chr6.3:52685475-52685494 None:intergenic 25.0%
!! TTCTTTTACACTATCACTTA+GGG - chr6.3:52687256-52687275 None:intergenic 25.0%
!! TTTCTTTTACACTATCACTT+AGG - chr6.3:52687257-52687276 None:intergenic 25.0%
!!! AGTGAGTTTTGTAATAATCA+TGG - chr6.3:52686860-52686879 None:intergenic 25.0%
!!! CTTTAAGATATTCATCATAG+TGG - chr6.3:52687134-52687153 None:intergenic 25.0%
!!! TAGTTTGTCTTTGAAATGTT+TGG + chr6.3:52686059-52686078 MS.gene83674:intron 25.0%
ACATTTGGTATCACATTGTA+GGG + chr6.3:52685638-52685657 MS.gene83674:intron 30.0%
ACTAAGATTGTTACTCTTGA+TGG + chr6.3:52686598-52686617 MS.gene83674:intron 30.0%
ACTCTGTTAATATAACTGTG+AGG + chr6.3:52686112-52686131 MS.gene83674:intron 30.0%
GACAATGCATAATATATGCA+AGG + chr6.3:52685994-52686013 MS.gene83674:intron 30.0%
GACATGTAATTATGGAATCA+TGG + chr6.3:52686784-52686803 MS.gene83674:intron 30.0%
GATAGAGAACCTACAAATAA+GGG - chr6.3:52686228-52686247 None:intergenic 30.0%
GTAAAAGAAATGGACATTGA+GGG + chr6.3:52687267-52687286 MS.gene83674:CDS 30.0%
TAAAAGAAATGGACATTGAG+GGG + chr6.3:52687268-52687287 MS.gene83674:CDS 30.0%
TCATCAATCATAGGATGATA+TGG - chr6.3:52685747-52685766 None:intergenic 30.0%
TGAAAATGGAGAATGATCAA+TGG + chr6.3:52685318-52685337 MS.gene83674:intron 30.0%
TGAGCAAGTAATAATCTATG+AGG - chr6.3:52685175-52685194 None:intergenic 30.0%
TGATTCCATAATTACATGTC+AGG - chr6.3:52686784-52686803 None:intergenic 30.0%
TGTAAAAGAAATGGACATTG+AGG + chr6.3:52687266-52687285 MS.gene83674:CDS 30.0%
TTACTTTCTCTTATCTACTC+CGG - chr6.3:52685034-52685053 None:intergenic 30.0%
TTGAAATTTCTTTGGTTGGT+TGG + chr6.3:52687053-52687072 MS.gene83674:intron 30.0%
TTTGACCTGACATGTAATTA+TGG + chr6.3:52686776-52686795 MS.gene83674:intron 30.0%
! AAAGTTTAGAAAGCACAGAA+AGG + chr6.3:52687107-52687126 MS.gene83674:CDS 30.0%
! ACAAAAGAGTTCTAATGTTG+AGG + chr6.3:52687167-52687186 MS.gene83674:CDS 30.0%
! GAATTTTCCTTTGGACTAAA+AGG - chr6.3:52685142-52685161 None:intergenic 30.0%
! GATTTCTGGATTGATGAATT+TGG + chr6.3:52686973-52686992 MS.gene83674:intron 30.0%
! TGCTGATTGAAAGATGAAAA+TGG + chr6.3:52685304-52685323 MS.gene83674:intron 30.0%
!! GTTAAGATTCTGAAACAGAT+CGG + chr6.3:52687079-52687098 MS.gene83674:intron 30.0%
!!! TCTGAGATAATATTTTGGTC+TGG + chr6.3:52686198-52686217 MS.gene83674:intron 30.0%
AAAATGTTACCATCCCCTTT+AGG - chr6.3:52685223-52685242 None:intergenic 35.0%
ACATTTCTTCTCTCCTTTAC+CGG - chr6.3:52687223-52687242 None:intergenic 35.0%
ATACAGTCGTCATCAATCAT+AGG - chr6.3:52685756-52685775 None:intergenic 35.0%
ATAGGATGATATGGAGTCTT+AGG - chr6.3:52685738-52685757 None:intergenic 35.0%
CACATTTGGTATCACATTGT+AGG + chr6.3:52685637-52685656 MS.gene83674:intron 35.0%
CATAGGATAAAGATAAGGCT+TGG + chr6.3:52686491-52686510 MS.gene83674:intron 35.0%
CATTTGGTATCACATTGTAG+GGG + chr6.3:52685639-52685658 MS.gene83674:intron 35.0%
CTAACTCATCCTTACAAAAC+CGG - chr6.3:52686554-52686573 None:intergenic 35.0%
CTAGAATCAATGGAACAAGA+TGG + chr6.3:52686396-52686415 MS.gene83674:CDS 35.0%
GATGTCCACTAGGTTAATTA+AGG - chr6.3:52686718-52686737 None:intergenic 35.0%
GCCTTATCTTTATCCTATGT+GGG - chr6.3:52686490-52686509 None:intergenic 35.0%
GGATAGAGAACCTACAAATA+AGG - chr6.3:52686229-52686248 None:intergenic 35.0%
TCCCACATAGGATAAAGATA+AGG + chr6.3:52686486-52686505 MS.gene83674:intron 35.0%
TCTAGATTCATGCATGAGTA+TGG + chr6.3:52685812-52685831 MS.gene83674:intron 35.0%
TGCATAATATATGCAAGGTC+CGG + chr6.3:52685999-52686018 MS.gene83674:intron 35.0%
TGGACTAAAAGGGAGTTATT+TGG - chr6.3:52685131-52685150 None:intergenic 35.0%
! AGCCTTATCTTTATCCTATG+TGG - chr6.3:52686491-52686510 None:intergenic 35.0%
! ATAACTCCCTTTTAGTCCAA+AGG + chr6.3:52685132-52685151 MS.gene83674:intron 35.0%
! CATCACAAGTTGAAGCAATA+TGG + chr6.3:52686295-52686314 MS.gene83674:CDS 35.0%
! CATGCATGAATCTAGAGTAA+TGG - chr6.3:52685808-52685827 None:intergenic 35.0%
! CTTCTCCTTCATGAGAATTT+TGG + chr6.3:52686630-52686649 MS.gene83674:intron 35.0%
! TCTGGATTACCCTTATTTGT+AGG + chr6.3:52686216-52686235 MS.gene83674:intron 35.0%
!! TAACTGATTTGTGCTTCAAG+TGG + chr6.3:52686659-52686678 MS.gene83674:intron 35.0%
!!! CTTTTTTTTCTGATGGTGTC+CGG - chr6.3:52686035-52686054 None:intergenic 35.0%
!!! TTTTTTTTCTGATGGTGTCC+GGG - chr6.3:52686034-52686053 None:intergenic 35.0%
AAAATTCTGCCTCACAGGTT+TGG - chr6.3:52685437-52685456 None:intergenic 40.0%
ACACTATCACTTAGGGAACA+TGG - chr6.3:52687249-52687268 None:intergenic 40.0%
ACCAACTAAGCTAAGCTAAC+GGG - chr6.3:52685971-52685990 None:intergenic 40.0%
AGAAACTACAGTAAGTGAGC+AGG - chr6.3:52686151-52686170 None:intergenic 40.0%
AGGTAATCGTGGAAGAATCA+TGG + chr6.3:52686831-52686850 MS.gene83674:intron 40.0%
ATACGAAGGCAACACCTAAA+GGG + chr6.3:52685206-52685225 MS.gene83674:intron 40.0%
ATATGCTTACTAACTCTCGC+AGG - chr6.3:52685059-52685078 None:intergenic 40.0%
ATCAAAACTTCCTCGTACAG+GGG - chr6.3:52686250-52686269 None:intergenic 40.0%
CAAACTGACGAGTTAAAAGC+AGG - chr6.3:52685598-52685617 None:intergenic 40.0%
CACCAACTAAGCTAAGCTAA+CGG - chr6.3:52685972-52685991 None:intergenic 40.0%
CATAATATATGCAAGGTCCG+GGG + chr6.3:52686001-52686020 MS.gene83674:intron 40.0%
CATCAAAACTTCCTCGTACA+GGG - chr6.3:52686251-52686270 None:intergenic 40.0%
CATTTCTGCATAGGTAATCG+TGG + chr6.3:52686820-52686839 MS.gene83674:intron 40.0%
CTTAACTGTTGATGTCCACT+AGG - chr6.3:52686728-52686747 None:intergenic 40.0%
GAATCAATGGAACAAGATGG+TGG + chr6.3:52686399-52686418 MS.gene83674:CDS 40.0%
GAGGATGATAATCCTGAAAC+CGG + chr6.3:52687201-52687220 MS.gene83674:CDS 40.0%
GATAATCCTGAAACCGGTAA+AGG + chr6.3:52687207-52687226 MS.gene83674:CDS 40.0%
GCATAATATATGCAAGGTCC+GGG + chr6.3:52686000-52686019 MS.gene83674:intron 40.0%
GGCTAACATTGGAGAAATTG+AGG + chr6.3:52685680-52685699 MS.gene83674:CDS 40.0%
TATACGAAGGCAACACCTAA+AGG + chr6.3:52685205-52685224 MS.gene83674:intron 40.0%
TCAACAAGAAGCCTATACGA+AGG + chr6.3:52685192-52685211 MS.gene83674:intron 40.0%
TCCAGAAATCGCAATACACA+AGG - chr6.3:52686963-52686982 None:intergenic 40.0%
TCCTTGTGTATTGCGATTTC+TGG + chr6.3:52686959-52686978 MS.gene83674:intron 40.0%
TGAGGATGAGCTAGAATCAA+TGG + chr6.3:52686386-52686405 MS.gene83674:CDS 40.0%
! GAACTTCTGCTCTTTTTCTG+TGG + chr6.3:52685340-52685359 MS.gene83674:intron 40.0%
! GTTAGTTAGTGCGCTTTGAA+GGG - chr6.3:52685109-52685128 None:intergenic 40.0%
! TCAGTAATTTTCTGCCTCAC+AGG - chr6.3:52685714-52685733 None:intergenic 40.0%
! TTAGCTTAGCTTAGTTGGTG+AGG + chr6.3:52685972-52685991 MS.gene83674:intron 40.0%
! TTCTGCTCTTTTTCTGTGGT+TGG + chr6.3:52685344-52685363 MS.gene83674:intron 40.0%
! TTTAGGTGTTGCCTTCGTAT+AGG - chr6.3:52685206-52685225 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG + chr6.3:52686552-52686571 MS.gene83674:intron 40.0%
!!! TTTTTTTCTGATGGTGTCCG+GGG - chr6.3:52686033-52686052 None:intergenic 40.0%
AAGGGCAGAAAACAGGAAAG+AGG - chr6.3:52685091-52685110 None:intergenic 45.0%
AGGGCAGAAAACAGGAAAGA+GGG - chr6.3:52685090-52685109 None:intergenic 45.0%
ATTTGGTTGGACATCGTCTG+AGG + chr6.3:52686368-52686387 MS.gene83674:CDS 45.0%
CCAACTAAGCTAAGCTAACG+GGG - chr6.3:52685970-52685989 None:intergenic 45.0%
GAAAAACTCACGTCCCACAT+AGG + chr6.3:52686474-52686493 MS.gene83674:intron 45.0%
GAAAAAGTCTTCCACACCTC+CGG + chr6.3:52687290-52687309 MS.gene83674:CDS 45.0%
GCACTGGACAATCATTTGGT+TGG + chr6.3:52686355-52686374 MS.gene83674:CDS 45.0%
GCATCAAAACTTCCTCGTAC+AGG - chr6.3:52686252-52686271 None:intergenic 45.0%
TACGAAGGCAACACCTAAAG+GGG + chr6.3:52685207-52685226 MS.gene83674:intron 45.0%
TCGGAAAAATTCTGCCTCAC+AGG - chr6.3:52685442-52685461 None:intergenic 45.0%
TTGAGGCAAACAAACCTGTG+AGG + chr6.3:52685697-52685716 MS.gene83674:CDS 45.0%
! GATATGGACTATGGACTCTC+AGG - chr6.3:52685466-52685485 None:intergenic 45.0%
! GGTTAGTTAGTGCGCTTTGA+AGG - chr6.3:52685110-52685129 None:intergenic 45.0%
! GTAGGCTCTAGTAGCAAAAG+AGG + chr6.3:52686333-52686352 MS.gene83674:CDS 45.0%
! TCAATGGAACAAGATGGTGG+TGG + chr6.3:52686402-52686421 MS.gene83674:CDS 45.0%
! TCTAGTAGCAAAAGAGGCAC+TGG + chr6.3:52686339-52686358 MS.gene83674:CDS 45.0%
!! AGAGGCACTGGACAATCATT+TGG + chr6.3:52686351-52686370 MS.gene83674:CDS 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG - chr6.3:52686545-52686564 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG + chr6.3:52686542-52686561 MS.gene83674:intron 45.0%
!! TTCTCTCCTTTACCGGTTTC+AGG - chr6.3:52687216-52687235 None:intergenic 45.0%
AAGGCAACACCTAAAGGGGA+TGG + chr6.3:52685211-52685230 MS.gene83674:intron 50.0%
AGGTGGGATGAGGCTAACAT+TGG + chr6.3:52685669-52685688 MS.gene83674:CDS 50.0%
ATTGTAGGGGACGTGTAAGG+TGG + chr6.3:52685652-52685671 MS.gene83674:intron 50.0%
CACATTGTAGGGGACGTGTA+AGG + chr6.3:52685649-52685668 MS.gene83674:intron 50.0%
GCAACTCTCACCTTACAAGC+CGG + chr6.3:52686532-52686551 MS.gene83674:intron 50.0%
GGCAGAAAACAGGAAAGAGG+GGG - chr6.3:52685088-52685107 None:intergenic 50.0%
GGGCAGAAAACAGGAAAGAG+GGG - chr6.3:52685089-52685108 None:intergenic 50.0%
TGTCAGCAACCAAACCTGTG+AGG + chr6.3:52685425-52685444 MS.gene83674:intron 50.0%
TGTTGAGGATGAGAGTGACG+AGG + chr6.3:52687182-52687201 MS.gene83674:CDS 50.0%
TTGTAGGGGACGTGTAAGGT+GGG + chr6.3:52685653-52685672 MS.gene83674:intron 50.0%
! CCCCGTTAGCTTAGCTTAGT+TGG + chr6.3:52685967-52685986 MS.gene83674:intron 50.0%
! TGGACTGCTCTGAGTGATGT+AGG + chr6.3:52686315-52686334 MS.gene83674:CDS 50.0%
!! CGCTTTGAAGGGCAGAAAAC+AGG - chr6.3:52685098-52685117 None:intergenic 50.0%
GGACTATGGACTCTCAGGCT+CGG - chr6.3:52685461-52685480 None:intergenic 55.0%
GGTTCTCTATCCCCTGTACG+AGG + chr6.3:52686237-52686256 MS.gene83674:intron 55.0%
TCTTCCACACCTCCGGCTAA+TGG + chr6.3:52687297-52687316 MS.gene83674:CDS 55.0%
CGAACCATTAGCCGGAGGTG+TGG - chr6.3:52687304-52687323 None:intergenic 60.0%
GGGACGTGTAAGGTGGGATG+AGG + chr6.3:52685659-52685678 MS.gene83674:CDS 60.0%
AAGGTCCGGGGTTCGAACCC+CGG + chr6.3:52686013-52686032 MS.gene83674:intron 65.0%
GGTGTCCGGGGTTCGAACCC+CGG - chr6.3:52686021-52686040 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 52685018 52687326 52685018 ID=MS.gene83674
chr6.3 mRNA 52685018 52687326 52685018 ID=MS.gene83674.t1;Parent=MS.gene83674
chr6.3 exon 52685018 52685049 52685018 ID=MS.gene83674.t1.exon1;Parent=MS.gene83674.t1
chr6.3 CDS 52685018 52685049 52685018 ID=cds.MS.gene83674.t1;Parent=MS.gene83674.t1
chr6.3 exon 52685659 52685771 52685659 ID=MS.gene83674.t1.exon2;Parent=MS.gene83674.t1
chr6.3 CDS 52685659 52685771 52685659 ID=cds.MS.gene83674.t1;Parent=MS.gene83674.t1
chr6.3 exon 52686238 52686423 52686238 ID=MS.gene83674.t1.exon3;Parent=MS.gene83674.t1
chr6.3 CDS 52686238 52686423 52686238 ID=cds.MS.gene83674.t1;Parent=MS.gene83674.t1
chr6.3 exon 52687085 52687326 52687085 ID=MS.gene83674.t1.exon4;Parent=MS.gene83674.t1
chr6.3 CDS 52687085 52687326 52687085 ID=cds.MS.gene83674.t1;Parent=MS.gene83674.t1
Gene Sequence

>MS.gene83674

ATGTTACATCTGACCGGAGTAGATAAGAGAAAGTAAATCCTGCGAGAGTTAGTAAGCATATCTAGATCCCCCTCTTTCCTGTTTTCTGCCCTTCAAAGCGCACTAACTAACCAAATAACTCCCTTTTAGTCCAAAGGAAAATTCATGATAACTACCTCATAGATTATTACTTGCTCAACAAGAAGCCTATACGAAGGCAACACCTAAAGGGGATGGTAACATTTTGTATTGAACTGACATCAAATTAAAGAAAAAAAAGGAGTAGTGTCTGTTTAACGAAAGCACATGCTGATTGAAAGATGAAAATGGAGAATGATCAATGGAACTTCTGCTCTTTTTCTGTGGTTGGACCATATACTATACTATAGAAACATTCAAAATGGTGTTTTTTTTTTTTTTTTGAGAAATGTCAGCAACCAAACCTGTGAGGCAGAATTTTTCCGAGCCTGAGAGTCCATAGTCCATATCATTCTATAATTATGTAAAAAGATTGTTTAAACTTCATGTTTTCATTAATTATGCATGTTTGAATATGTATTTTAAAAGCATTTATGTGATCTTTTCATTTCATTAATGTCCTGCTTTTAACTCGTCAGTTTGTTTTTAATGAAATGAATCTCACATTTGGTATCACATTGTAGGGGACGTGTAAGGTGGGATGAGGCTAACATTGGAGAAATTGAGGCAAACAAACCTGTGAGGCAGAAAATTACTGAGCCTAAGACTCCATATCATCCTATGATTGATGACGACTGTATGTAAAGAACATAACGTAAACTTCATGTTTCCATTACTCTAGATTCATGCATGAGTATGGCTATATATACAAATAATAATATGATATATTACTTAAACAGGGAAGGTTTATTTTATTTTACTTTCAAGTTTTAACTGTAGTTAATAATTATAATAGTGCTCTTATTCTTGTGCTAGAATATAGTTTGTCTGTCCCCGTTAGCTTAGCTTAGTTGGTGAGGACAATGCATAATATATGCAAGGTCCGGGGTTCGAACCCCGGACACCATCAGAAAAAAAAGAATATAGTTTGTCTTTGAAATGTTTGGTTTAGAAATGTGAGAACATATTTCAAACAAACTCTGTTAATATAACTGTGAGGTTTTATTCTCAAACCTGCTCACTTACTGTAGTTTCTAGACGCTGTATGTGCGTAAACGTTTGTTCTGAGATAATATTTTGGTCTGGATTACCCTTATTTGTAGGTTCTCTATCCCCTGTACGAGGAAGTTTTGATGCAAGTATTGATGATGACAAGCGTGCATCACAAGTTGAAGCAATATGGACTGCTCTGAGTGATGTAGGCTCTAGTAGCAAAAGAGGCACTGGACAATCATTTGGTTGGACATCGTCTGAGGATGAGCTAGAATCAATGGAACAAGATGGTGGTGGTATGATACTATGATTTAATCTTCATTTCATATTTCTGTCTGATTATTGGGAAAAACTCACGTCCCACATAGGATAAAGATAAGGCTTGGCATGAATTTATAAAGATGGCAACTCTCACCTTACAAGCCGGTTTTGTAAGGATGAGTTAGGTCCAATATAAAAGCATAATATTGACTAAGATTGTTACTCTTGATGGCTGTTTCTGCTTCTCCTTCATGAGAATTTTGGTTTTAATAACTGATTTGTGCTTCAAGTGGTTGAAACATCTGAGTAATAATTCTAGACTATTACCTTAATTAACCTAGTGGACATCAACAGTTAAGAATTATAATATGGTGAAGGGTTTTTACATTTGACCTGACATGTAATTATGGAATCATGGATTATAATTATGACATTTCTGCATAGGTAATCGTGGAAGAATCATGGATTCCATGATTATTACAAAACTCACTGTTAGTTTGAAAATAAAATCTATATTATTGATAAATATACTTGAATAATACTTATATACGGAACGCACTTTTTTCTAGATCCTTGTGTATTGCGATTTCTGGATTGATGAATTTGGACATTAATAAGCTTATTTGCTATTTTATTGATAAATTACTTGTTTTTCTTTTCTTACTTGAAATTTCTTTGGTTGGTTGGATTGTTAAGATTCTGAAACAGATCGGAGCAAAAAGTTTAGAAAGCACAGAAAGGCCCACTATGATGAATATCTTAAAGTGAAAGAGCATCGACAAAAGAGTTCTAATGTTGAGGATGAGAGTGACGAGGATGATAATCCTGAAACCGGTAAAGGAGAGAAGAAATGTGAACCATGTTCCCTAAGTGATAGTGTAAAAGAAATGGACATTGAGGGGAAAAAGTCTTCCACACCTCCGGCTAATGGTTCGTAA
Protein sequence

>MS.gene83674.t1

MLHLTGVDKRKGRVRWDEANIGEIEANKPVRQKITEPKTPYHPMIDDDCSLSPVRGSFDASIDDDKRASQVEAIWTALSDVGSSSKRGTGQSFGWTSSEDELESMEQDGGDSETDRSKKFRKHRKAHYDEYLKVKEHRQKSSNVEDESDEDDNPETGKGEKKCEPCSLSDSVKEMDIEGKKSSTPPANGS