AlfalfaGEDB | MS.gene051541

M. sativa cultivar XinJiangDaYe / MS.gene051541

KEGG: -
GO: -
PFAM: PF13359.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051541.t1	XP_024631065.1	98.9	438	5	0	73	510	98	535	2.80E-252	880.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051541.t1	Q9M2U3	30.4	326	187	10	169	467	54	366	2.3e-37	158.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051541.t1	A0A396JK50	98.9	438	5	0	73	510	98	535	2.0e-252	880.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049801	MS.gene051541	0.80486	1.76E-49	-1.69E-46
MS.gene049983	MS.gene051541	0.807816	4.20E-50	-1.69E-46
MS.gene050654	MS.gene051541	0.828355	9.41E-55	-1.69E-46
MS.gene050737	MS.gene051541	0.830356	3.08E-55	-1.69E-46
MS.gene050941	MS.gene051541	0.840973	6.30E-58	-1.69E-46
MS.gene051122	MS.gene051541	0.800598	1.34E-48	-1.69E-46
MS.gene051184	MS.gene051541	0.850267	1.90E-60	-1.69E-46
MS.gene051541	MS.gene051655	0.809388	1.94E-50	-1.69E-46
MS.gene051541	MS.gene052118	0.821872	3.20E-53	-1.69E-46
MS.gene051541	MS.gene052493	0.814945	1.19E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051541.t1	AT5G12010	68.230	469	147	1	42	510	36	502	0.0	695
MS.gene051541.t1	AT4G29780	56.805	507	213	3	5	510	39	540	0.0	578
MS.gene051541.t1	AT3G55350	30.556	324	185	10	169	465	54	364	5.33e-43	157
MS.gene051541.t1	AT3G63270	29.874	318	181	8	169	456	44	349	3.75e-40	150
MS.gene051541.t1	AT3G19120	24.919	309	194	9	183	471	117	407	5.43e-22	99.0
MS.gene051541.t1	AT1G72275	25.424	295	163	10	187	465	101	354	1.37e-17	85.5
MS.gene051541.t1	AT1G72275	25.424	295	163	10	187	465	101	354	1.75e-17	85.1

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Find 75 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTAAGAATGAGTTTGA+GGG	0.502218	1.3:-7105969	MS.gene051541:CDS
AAAGAGTAGCTGTTTGTCTT+TGG	0.293111	1.3:-7106145	MS.gene051541:CDS
AACAAGAAGGAAGAAATAAA+GGG	0.452595	1.3:-7106674	MS.gene051541:CDS
AACAGTGGTAAATCTAATGG+TGG	0.686560	1.3:-7106365	MS.gene051541:CDS
AAGAATCAGAGAAAGTTAGA+AGG	0.413375	1.3:-7106484	MS.gene051541:CDS
AATAATGGAGGACTTCTTAA+AGG	0.315082	1.3:-7105699	MS.gene051541:CDS
AATCTTACTTGGACACAACA+TGG	0.563523	1.3:-7105609	MS.gene051541:CDS
AATGAGTTTGAGGGTATGTC+AGG	0.465605	1.3:-7105960	MS.gene051541:CDS
AATGTTAATGATGTTAACAG+TGG	0.645570	1.3:-7106380	MS.gene051541:CDS
ACAATATCAACCATAAGTTC+AGG	0.481741	1.3:+7105408	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATCAGAGAAAGTTAGA+AGG	-	chr1.3:7105612-7105631	MS.gene051541:CDS	30.0%
ACAATATCAACCATAAGTTC+AGG	+	chr1.3:7106691-7106710	None:intergenic	30.0%
ACTAAAACCCAATCCATTAA+AGG	+	chr1.3:7106451-7106470	None:intergenic	30.0%
ACTATAACCATCTTCAAGAT+TGG	+	chr1.3:7105585-7105604	None:intergenic	30.0%
CAAAAACAAGAAGAACAAGA+AGG	-	chr1.3:7105409-7105428	MS.gene051541:CDS	30.0%
CATAACATTTGTGAGATGAA+AGG	-	chr1.3:7106652-7106671	MS.gene051541:CDS	30.0%
CTAATCTTAGGAGCTATAAT+TGG	+	chr1.3:7106202-7106221	None:intergenic	30.0%
GAACAAGAAGGAAGAAATAA+AGG	-	chr1.3:7105421-7105440	MS.gene051541:CDS	30.0%
GAGATCTGTTAATTCATTGA+AGG	-	chr1.3:7106741-7106760	MS.gene051541:CDS	30.0%
GTTAACAGTGGTAAATCTAA+TGG	-	chr1.3:7105728-7105747	MS.gene051541:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	7105293	7106825	7105293	ID=MS.gene051541
chr1.3	mRNA	7105293	7106825	7105293	ID=MS.gene051541.t1;Parent=MS.gene051541
chr1.3	exon	7105293	7106825	7105293	ID=MS.gene051541.t1.exon1;Parent=MS.gene051541.t1
chr1.3	CDS	7105293	7106825	7105293	ID=cds.MS.gene051541.t1;Parent=MS.gene051541.t1

Gene Sequence

>MS.gene051541

ATGAACAATCCAAACAACACTGCTACTTCAACAAATATCAGAAAAAGACGCAGAAAAAATGAAGATGGTGGTGATGATGATGAAGATCATGATGGTTCAATCAATGAAGGAGGTGGCAAAAACAAGAAGAACAAGAAGGAAGAAATAAAGGGTATTCTCACATCAATTCTCTTGCTTGATGAACAAGAGAAACAAGAGATTGAAGATAGCAAGAAAGTCTCAGAGGATGAGAAATTCTCTTTCGAGACAAATCATAAGAAGAAAACAAAAGCTATGGTTGATTATTACTCCAATCTTGAAGATGGTTATAGTCAAGTTGAAGAATCAGAGAAAGTTAGAAGGAGAAAAACAAGAAACATGTCAAATTCTGTAGCTATTGCTGCTACATGTAGTGAGAATTTTGAAGCAAATAGTGAAGGTGTTAATGTTAATGATGTTAACAGTGGTAAATCTAATGGTGGTGGTTCACAGAGAAGGCTTTGGGTGAAGGATCGTTCAGGAGCATGGTGGGATGAATGTAACAAAGAAGATTTTCCTGAACATGAGTTTAAGAAAGCATTTAGAATGGGAAAATCAACTTTTGATTTGATTTGTGAAGAATTGAATTCAGCAATTGTGAAAGAAGATACAACTTTGAGAACTGCAATTCCAGTGAGACAAAGAGTAGCTGTTTGTCTTTGGAGGTTAGCAACAGGTGATCCTCTTAGAATTGTTTCAAAAAGGTTTGGTTTAGGTATATCAACTTGTCATAAACTTGTTCTTGAAGTTTGCACTGCTATTAAAACTGTTCTTATGCCTAAGTATCTTCAATGGCCTAATGATGCTTCTTTGAGAAAAATTAAGAATGAGTTTGAGGGTATGTCAGGTATTCCAAATGTTGTAGGGTCCATGTATACATCACATGTTCCAATTATAGCTCCTAAGATTAGTGTTGCTGCTTATTTTAACAAGAGACATACTGAGAGGAATCAAAAGACTTCATATTCAATAACTGTTCAAGGTGTTGTTGATACAAATGGTGTTTTCACTGATGTTTGTATTGGTTGGCCTGGTTCAATGCCTGATGATCAAGTGTTAGAAAAATCAGCACTTTTTCAAAGGGCTAATAATGGAGGACTTCTTAAAGGTGTTTGGATTGTTGGTAGTTCAGGGTATCCTTTAATGGATTGGGTTTTAGTACCTTATACTCAACAAAATCTTACTTGGACACAACATGGTTTCAATGAGAAGATTGGTGAGATACAAAAAGTTGCTAAAGATGCATTTGCTAGATTGAAAGGTAGGTGGTCTTGTTTGCAGAAAAGGACTGAAGTTAAGCTACAAGATTTGCCTGTTGTACTTGGTGCTTGTTGTGTTTTGCATAACATTTGTGAGATGAAAGGTGAGAAAATGGATCCTGAACTTATGGTTGATATTGTTGATGATGAAATGGTTCCTGAAGTTAGTTTGAGATCTGTTAATTCATTGAAGGCTAGAGATGCTATTGCTCATAATCTTTTGCATCATGGTTTAGCAGGCACTTCTTTTCTTTAA

Protein sequence

>MS.gene051541.t1

MNNPNNTATSTNIRKRRRKNEDGGDDDEDHDGSINEGGGKNKKNKKEEIKGILTSILLLDEQEKQEIEDSKKVSEDEKFSFETNHKKKTKAMVDYYSNLEDGYSQVEESEKVRRRKTRNMSNSVAIAATCSENFEANSEGVNVNDVNSGKSNGGGSQRRLWVKDRSGAWWDECNKEDFPEHEFKKAFRMGKSTFDLICEELNSAIVKEDTTLRTAIPVRQRVAVCLWRLATGDPLRIVSKRFGLGISTCHKLVLEVCTAIKTVLMPKYLQWPNDASLRKIKNEFEGMSGIPNVVGSMYTSHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDTNGVFTDVCIGWPGSMPDDQVLEKSALFQRANNGGLLKGVWIVGSSGYPLMDWVLVPYTQQNLTWTQHGFNEKIGEIQKVAKDAFARLKGRWSCLQKRTEVKLQDLPVVLGACCVLHNICEMKGEKMDPELMVDIVDDEMVPEVSLRSVNSLKARDAIAHNLLHHGLAGTSFL