Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051541.t1 | XP_024631065.1 | 98.9 | 438 | 5 | 0 | 73 | 510 | 98 | 535 | 2.80E-252 | 880.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051541.t1 | Q9M2U3 | 30.4 | 326 | 187 | 10 | 169 | 467 | 54 | 366 | 2.3e-37 | 158.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051541.t1 | A0A396JK50 | 98.9 | 438 | 5 | 0 | 73 | 510 | 98 | 535 | 2.0e-252 | 880.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049801 | MS.gene051541 | 0.80486 | 1.76E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene051541 | 0.807816 | 4.20E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene051541 | 0.828355 | 9.41E-55 | -1.69E-46 |
| MS.gene050737 | MS.gene051541 | 0.830356 | 3.08E-55 | -1.69E-46 |
| MS.gene050941 | MS.gene051541 | 0.840973 | 6.30E-58 | -1.69E-46 |
| MS.gene051122 | MS.gene051541 | 0.800598 | 1.34E-48 | -1.69E-46 |
| MS.gene051184 | MS.gene051541 | 0.850267 | 1.90E-60 | -1.69E-46 |
| MS.gene051541 | MS.gene051655 | 0.809388 | 1.94E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene052118 | 0.821872 | 3.20E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene052493 | 0.814945 | 1.19E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene052674 | 0.819763 | 9.79E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene052675 | 0.814055 | 1.87E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene052677 | 0.815746 | 7.89E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene053215 | 0.817015 | 4.11E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene053726 | 0.837531 | 4.92E-57 | -1.69E-46 |
| MS.gene051541 | MS.gene054479 | 0.833711 | 4.56E-56 | -1.69E-46 |
| MS.gene051541 | MS.gene054892 | 0.835153 | 1.98E-56 | -1.69E-46 |
| MS.gene051541 | MS.gene054893 | 0.833283 | 5.83E-56 | -1.69E-46 |
| MS.gene051541 | MS.gene055327 | 0.847759 | 9.43E-60 | -1.69E-46 |
| MS.gene051541 | MS.gene055442 | 0.802904 | 4.50E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene055864 | 0.842074 | 3.23E-58 | -1.69E-46 |
| MS.gene051541 | MS.gene058081 | 0.806681 | 7.31E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene058429 | 0.967314 | 4.16E-127 | -1.69E-46 |
| MS.gene051541 | MS.gene059283 | 0.810016 | 1.42E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene060259 | 0.815228 | 1.03E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene060435 | 0.812066 | 5.11E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene06052 | 0.833499 | 5.15E-56 | -1.69E-46 |
| MS.gene051541 | MS.gene060850 | 0.867033 | 1.84E-65 | -1.69E-46 |
| MS.gene051541 | MS.gene060851 | 0.873034 | 2.01E-67 | -1.69E-46 |
| MS.gene051541 | MS.gene060852 | 0.872433 | 3.19E-67 | -1.69E-46 |
| MS.gene051541 | MS.gene060932 | 0.8361 | 1.14E-56 | -1.69E-46 |
| MS.gene051541 | MS.gene06121 | 0.84949 | 3.13E-60 | -1.69E-46 |
| MS.gene051541 | MS.gene06165 | 0.846075 | 2.73E-59 | -1.69E-46 |
| MS.gene051541 | MS.gene061787 | 0.801886 | 7.29E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene063524 | 0.824752 | 6.81E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene064638 | 0.800793 | 1.22E-48 | -1.69E-46 |
| MS.gene051541 | MS.gene065159 | 0.804134 | 2.50E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene065460 | 0.846705 | 1.84E-59 | -1.69E-46 |
| MS.gene051541 | MS.gene066047 | 0.839743 | 1.32E-57 | -1.69E-46 |
| MS.gene051541 | MS.gene067043 | 0.85211 | 5.72E-61 | -1.69E-46 |
| MS.gene051541 | MS.gene067812 | 0.800376 | 1.48E-48 | -1.69E-46 |
| MS.gene051541 | MS.gene069412 | 0.820697 | 5.98E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene069415 | 0.81837 | 2.03E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene069840 | 0.81423 | 1.71E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene070671 | 0.821346 | 4.24E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene070757 | 0.803406 | 3.54E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene070918 | 0.805495 | 1.30E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene07140 | 0.815079 | 1.11E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene071753 | 0.827654 | 1.39E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene072325 | 0.819381 | 1.20E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene072326 | 0.842422 | 2.61E-58 | -1.69E-46 |
| MS.gene051541 | MS.gene072541 | 0.817788 | 2.75E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene072873 | 0.814247 | 1.70E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene073387 | 0.810608 | 1.06E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene073400 | 0.821872 | 3.20E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene074040 | 0.837165 | 6.11E-57 | -1.69E-46 |
| MS.gene051541 | MS.gene074100 | 0.803262 | 3.79E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene08202 | 0.842815 | 2.05E-58 | -1.69E-46 |
| MS.gene051541 | MS.gene20149 | 0.845055 | 5.15E-59 | -1.69E-46 |
| MS.gene051541 | MS.gene20198 | 0.844242 | 8.54E-59 | -1.69E-46 |
| MS.gene051541 | MS.gene20608 | 0.824233 | 9.02E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene22705 | 0.8041 | 2.54E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene23464 | 0.83487 | 2.33E-56 | -1.69E-46 |
| MS.gene051541 | MS.gene24824 | 0.816109 | 6.55E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene25121 | 0.80845 | 3.08E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene25215 | 0.810382 | 1.18E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene25217 | 0.818163 | 2.26E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene25220 | 0.808608 | 2.85E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene25469 | 0.834853 | 2.36E-56 | -1.69E-46 |
| MS.gene051541 | MS.gene25471 | 0.839854 | 1.24E-57 | -1.69E-46 |
| MS.gene051541 | MS.gene29041 | 0.81024 | 1.27E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene29096 | 0.802753 | 4.83E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene30368 | 0.814736 | 1.32E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene30397 | 0.812219 | 4.73E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene31960 | -0.828436 | 9.00E-55 | -1.69E-46 |
| MS.gene051541 | MS.gene32071 | 0.821099 | 4.83E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene32238 | 0.83387 | 4.16E-56 | -1.69E-46 |
| MS.gene051541 | MS.gene32863 | 0.825969 | 3.51E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene33056 | 0.955007 | 8.14E-113 | -1.69E-46 |
| MS.gene051541 | MS.gene33133 | 0.827383 | 1.61E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene33177 | 0.861717 | 8.43E-64 | -1.69E-46 |
| MS.gene051541 | MS.gene33180 | 0.856589 | 2.90E-62 | -1.69E-46 |
| MS.gene051541 | MS.gene33793 | -0.80472 | 1.89E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene34691 | 0.840887 | 6.63E-58 | -1.69E-46 |
| MS.gene051541 | MS.gene36154 | 0.827851 | 1.24E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene36289 | 0.816568 | 5.17E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene36981 | 0.806409 | 8.34E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene37468 | 0.809854 | 1.54E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene37486 | 0.810777 | 9.74E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene37917 | 0.825982 | 3.48E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene38716 | 0.806148 | 9.47E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene38998 | 0.812589 | 3.93E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene39438 | 0.803551 | 3.30E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene39665 | 0.819553 | 1.09E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene40006 | 0.82364 | 1.24E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene40991 | 0.810428 | 1.16E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene41597 | 0.827048 | 1.94E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene41729 | 0.80988 | 1.52E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene42514 | 0.802778 | 4.77E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene43152 | 0.811156 | 8.06E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene43381 | 0.83282 | 7.60E-56 | -1.69E-46 |
| MS.gene051541 | MS.gene44621 | 0.829228 | 5.79E-55 | -1.69E-46 |
| MS.gene051541 | MS.gene44698 | 0.84628 | 2.40E-59 | -1.69E-46 |
| MS.gene051541 | MS.gene44701 | 0.869912 | 2.17E-66 | -1.69E-46 |
| MS.gene051541 | MS.gene45616 | 0.803671 | 3.12E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene47195 | 0.824058 | 9.92E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene47695 | 0.852475 | 4.51E-61 | -1.69E-46 |
| MS.gene051541 | MS.gene47801 | 0.842019 | 3.34E-58 | -1.69E-46 |
| MS.gene051541 | MS.gene47967 | 0.802905 | 4.49E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene48526 | 0.817097 | 3.93E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene48528 | 0.819124 | 1.37E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene48530 | 0.852537 | 4.33E-61 | -1.69E-46 |
| MS.gene051541 | MS.gene49553 | 0.827237 | 1.75E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene49602 | 0.804984 | 1.66E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene50200 | 0.804021 | 2.64E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene51030 | 0.80692 | 6.51E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene51611 | 0.828916 | 6.89E-55 | -1.69E-46 |
| MS.gene051541 | MS.gene52956 | 0.845909 | 3.03E-59 | -1.69E-46 |
| MS.gene051541 | MS.gene53825 | 0.855961 | 4.44E-62 | -1.69E-46 |
| MS.gene051541 | MS.gene53855 | 0.810131 | 1.34E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene53859 | -0.809918 | 1.49E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene55767 | -0.820442 | 6.85E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene55778 | 0.827122 | 1.86E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene55840 | 0.85205 | 5.95E-61 | -1.69E-46 |
| MS.gene051541 | MS.gene56300 | 0.803786 | 2.95E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene57298 | 0.814676 | 1.36E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene58627 | 0.828274 | 9.85E-55 | -1.69E-46 |
| MS.gene051541 | MS.gene60150 | 0.828514 | 8.62E-55 | -1.69E-46 |
| MS.gene051541 | MS.gene60302 | 0.856841 | 2.45E-62 | -1.69E-46 |
| MS.gene051541 | MS.gene60368 | 0.802604 | 5.18E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene61202 | 0.801594 | 8.36E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene62686 | 0.809788 | 1.59E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene64665 | 0.804635 | 1.97E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene64887 | 0.811007 | 8.68E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene65330 | 0.815783 | 7.75E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene65478 | 0.805564 | 1.26E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene68291 | 0.803464 | 3.44E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene69692 | 0.816743 | 4.73E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene70365 | 0.806462 | 8.13E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene71496 | 0.806449 | 8.18E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene71828 | 0.802847 | 4.62E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene71867 | 0.803709 | 3.06E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene71940 | 0.804966 | 1.68E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene72657 | 0.835886 | 1.29E-56 | -1.69E-46 |
| MS.gene051541 | MS.gene72748 | 0.813491 | 2.49E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene73245 | 0.838742 | 2.40E-57 | -1.69E-46 |
| MS.gene051541 | MS.gene73678 | 0.803762 | 2.99E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene73938 | 0.831302 | 1.80E-55 | -1.69E-46 |
| MS.gene051541 | MS.gene74204 | 0.800942 | 1.14E-48 | -1.69E-46 |
| MS.gene051541 | MS.gene74510 | 0.829377 | 5.33E-55 | -1.69E-46 |
| MS.gene051541 | MS.gene74511 | 0.827452 | 1.55E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene74932 | 0.805534 | 1.27E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene75564 | 0.871198 | 8.20E-67 | -1.69E-46 |
| MS.gene051541 | MS.gene75941 | 0.817376 | 3.40E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene76510 | 0.824628 | 7.28E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene77208 | 0.819395 | 1.19E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene77361 | 0.828393 | 9.22E-55 | -1.69E-46 |
| MS.gene051541 | MS.gene77971 | -0.813511 | 2.47E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene78230 | 0.803419 | 3.52E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene79120 | 0.853703 | 2.01E-61 | -1.69E-46 |
| MS.gene051541 | MS.gene80557 | 0.841336 | 5.06E-58 | -1.69E-46 |
| MS.gene051541 | MS.gene80821 | 0.801293 | 9.64E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene81118 | 0.804025 | 2.63E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene82325 | 0.801011 | 1.10E-48 | -1.69E-46 |
| MS.gene051541 | MS.gene83674 | 0.825383 | 4.83E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene83687 | 0.827207 | 1.78E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene83853 | 0.807108 | 5.94E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene84162 | 0.823885 | 1.09E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene84498 | 0.83585 | 1.32E-56 | -1.69E-46 |
| MS.gene051541 | MS.gene85126 | 0.828987 | 6.62E-55 | -1.69E-46 |
| MS.gene051541 | MS.gene85519 | 0.803322 | 3.68E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene85967 | 0.805787 | 1.13E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene86546 | 0.81488 | 1.23E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene88254 | 0.802814 | 4.69E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene88881 | 0.840121 | 1.05E-57 | -1.69E-46 |
| MS.gene051541 | MS.gene88883 | 0.854793 | 9.71E-62 | -1.69E-46 |
| MS.gene051541 | MS.gene89104 | 0.801623 | 8.25E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene90604 | 0.822194 | 2.70E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene90809 | 0.836494 | 9.06E-57 | -1.69E-46 |
| MS.gene051541 | MS.gene91006 | 0.841523 | 4.51E-58 | -1.69E-46 |
| MS.gene051541 | MS.gene91523 | 0.810045 | 1.40E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene91525 | 0.806776 | 6.98E-50 | -1.69E-46 |
| MS.gene051541 | MS.gene91920 | 0.822372 | 2.45E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene92336 | 0.804078 | 2.57E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene94111 | 0.826244 | 3.02E-54 | -1.69E-46 |
| MS.gene051541 | MS.gene94674 | 0.800447 | 1.43E-48 | -1.69E-46 |
| MS.gene051541 | MS.gene96973 | 0.822355 | 2.48E-53 | -1.69E-46 |
| MS.gene051541 | MS.gene97281 | 0.802729 | 4.89E-49 | -1.69E-46 |
| MS.gene051541 | MS.gene97447 | 0.811694 | 6.16E-51 | -1.69E-46 |
| MS.gene051541 | MS.gene99525 | 0.820123 | 8.10E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051541.t1 | AT5G12010 | 68.230 | 469 | 147 | 1 | 42 | 510 | 36 | 502 | 0.0 | 695 |
| MS.gene051541.t1 | AT4G29780 | 56.805 | 507 | 213 | 3 | 5 | 510 | 39 | 540 | 0.0 | 578 |
| MS.gene051541.t1 | AT3G55350 | 30.556 | 324 | 185 | 10 | 169 | 465 | 54 | 364 | 5.33e-43 | 157 |
| MS.gene051541.t1 | AT3G63270 | 29.874 | 318 | 181 | 8 | 169 | 456 | 44 | 349 | 3.75e-40 | 150 |
| MS.gene051541.t1 | AT3G19120 | 24.919 | 309 | 194 | 9 | 183 | 471 | 117 | 407 | 5.43e-22 | 99.0 |
| MS.gene051541.t1 | AT1G72275 | 25.424 | 295 | 163 | 10 | 187 | 465 | 101 | 354 | 1.37e-17 | 85.5 |
| MS.gene051541.t1 | AT1G72275 | 25.424 | 295 | 163 | 10 | 187 | 465 | 101 | 354 | 1.75e-17 | 85.1 |
Find 75 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGGATTGTTGGTAGTTC+AGG | 0.230857 | 1.3:-7105675 | MS.gene051541:CDS |
| GAACAAGAAGGAAGAAATAA+AGG | 0.232924 | 1.3:-7106675 | MS.gene051541:CDS |
| TAGTTCAGGGTATCCTTTAA+TGG | 0.269828 | 1.3:-7105661 | MS.gene051541:CDS |
| CTCTTAGAATTGTTTCAAAA+AGG | 0.277622 | 1.3:-7106103 | MS.gene051541:CDS |
| AAAGAGTAGCTGTTTGTCTT+TGG | 0.293111 | 1.3:-7106145 | MS.gene051541:CDS |
| CTAATCTTAGGAGCTATAAT+TGG | 0.309776 | 1.3:+7105897 | None:intergenic |
| CTTAAAGGTGTTTGGATTGT+TGG | 0.311954 | 1.3:-7105684 | MS.gene051541:CDS |
| AATAATGGAGGACTTCTTAA+AGG | 0.315082 | 1.3:-7105699 | MS.gene051541:CDS |
| TGAGATGAAAGGTGAGAAAA+TGG | 0.322872 | 1.3:-7105433 | MS.gene051541:CDS |
| GAGGACTTCTTAAAGGTGTT+TGG | 0.323578 | 1.3:-7105692 | MS.gene051541:CDS |
| AGGGTATCCTTTAATGGATT+GGG | 0.331257 | 1.3:-7105655 | MS.gene051541:CDS |
| ACTAAAACCCAATCCATTAA+AGG | 0.331503 | 1.3:+7105648 | None:intergenic |
| TTTCTCAAAGAAGCATCATT+AGG | 0.355787 | 1.3:+7105990 | None:intergenic |
| TAAGCAGCAACACTAATCTT+AGG | 0.360457 | 1.3:+7105885 | None:intergenic |
| GCTTTCTTAAACTCATGTTC+AGG | 0.371260 | 1.3:+7106269 | None:intergenic |
| CAACAAGCACCAAGTACAAC+AGG | 0.372673 | 1.3:+7105474 | None:intergenic |
| TACATGGACCCTACAACATT+TGG | 0.373103 | 1.3:+7105933 | None:intergenic |
| CAAGATTTGCCTGTTGTACT+TGG | 0.374359 | 1.3:-7105483 | MS.gene051541:CDS |
| ACTATAACCATCTTCAAGAT+TGG | 0.374608 | 1.3:+7106514 | None:intergenic |
| CAGGGTATCCTTTAATGGAT+TGG | 0.376667 | 1.3:-7105656 | MS.gene051541:CDS |
| GAAAATGGATCCTGAACTTA+TGG | 0.387747 | 1.3:-7105418 | MS.gene051541:CDS |
| GGTGGTCTTGTTTGCAGAAA+AGG | 0.390719 | 1.3:-7105521 | MS.gene051541:CDS |
| GTGGTTCACAGAGAAGGCTT+TGG | 0.396821 | 1.3:-7106343 | MS.gene051541:CDS |
| TCATATTCAATAACTGTTCA+AGG | 0.402367 | 1.3:-7105825 | MS.gene051541:CDS |
| GAGATCTGTTAATTCATTGA+AGG | 0.403396 | 1.3:-7105355 | MS.gene051541:CDS |
| TTTGGATTGTTGGTAGTTCA+GGG | 0.411269 | 1.3:-7105674 | MS.gene051541:CDS |
| AAGAATCAGAGAAAGTTAGA+AGG | 0.413375 | 1.3:-7106484 | MS.gene051541:CDS |
| GAGTAGCTGTTTGTCTTTGG+AGG | 0.420574 | 1.3:-7106142 | MS.gene051541:CDS |
| ATACTCAACAAAATCTTACT+TGG | 0.425165 | 1.3:-7105620 | MS.gene051541:CDS |
| CATGGTTTCAATGAGAAGAT+TGG | 0.432259 | 1.3:-7105591 | MS.gene051541:CDS |
| TATTACTCCAATCTTGAAGA+TGG | 0.432845 | 1.3:-7106521 | MS.gene051541:CDS |
| TGGTTCACAGAGAAGGCTTT+GGG | 0.436294 | 1.3:-7106342 | MS.gene051541:CDS |
| TGATATTGTTGATGATGAAA+TGG | 0.440386 | 1.3:-7105394 | MS.gene051541:CDS |
| TTTAAGAAAGCATTTAGAAT+GGG | 0.440670 | 1.3:-7106257 | MS.gene051541:CDS |
| AACAAGAAGGAAGAAATAAA+GGG | 0.452595 | 1.3:-7106674 | MS.gene051541:CDS |
| TCACTGATGTTTGTATTGGT+TGG | 0.453542 | 1.3:-7105779 | MS.gene051541:CDS |
| TCAGGTATTCCAAATGTTGT+AGG | 0.454924 | 1.3:-7105942 | MS.gene051541:CDS |
| CTTTGGGTGAAGGATCGTTC+AGG | 0.457053 | 1.3:-7106326 | MS.gene051541:CDS |
| AATGAGTTTGAGGGTATGTC+AGG | 0.465605 | 1.3:-7105960 | MS.gene051541:CDS |
| GTTGAAGTAGCAGTGTTGTT+TGG | 0.468143 | 1.3:+7106794 | None:intergenic |
| CAAGGTGTTGTTGATACAAA+TGG | 0.471226 | 1.3:-7105807 | MS.gene051541:CDS |
| GTTTAAGAAAGCATTTAGAA+TGG | 0.473472 | 1.3:-7106258 | MS.gene051541:CDS |
| GATGCATTTGCTAGATTGAA+AGG | 0.474433 | 1.3:-7105546 | MS.gene051541:CDS |
| TGTCTTTGGAGGTTAGCAAC+AGG | 0.478364 | 1.3:-7106131 | MS.gene051541:CDS |
| TTATGCCTAAGTATCTTCAA+TGG | 0.481589 | 1.3:-7106013 | MS.gene051541:CDS |
| ACAATATCAACCATAAGTTC+AGG | 0.481741 | 1.3:+7105408 | None:intergenic |
| TTAGGCCATTGAAGATACTT+AGG | 0.483192 | 1.3:+7106008 | None:intergenic |
| ACAGATCTCAAACTAACTTC+AGG | 0.483330 | 1.3:+7105369 | None:intergenic |
| ACAGAGAAGGCTTTGGGTGA+AGG | 0.490197 | 1.3:-7106336 | MS.gene051541:CDS |
| GTTAACAGTGGTAAATCTAA+TGG | 0.492715 | 1.3:-7106368 | MS.gene051541:CDS |
| ACAGCTACTCTTTGTCTCAC+TGG | 0.502124 | 1.3:+7106155 | None:intergenic |
| AAAATTAAGAATGAGTTTGA+GGG | 0.502218 | 1.3:-7105969 | MS.gene051541:CDS |
| GATGTTTGTATTGGTTGGCC+TGG | 0.503808 | 1.3:-7105774 | MS.gene051541:CDS |
| CATGATGGTTCAATCAATGA+AGG | 0.537105 | 1.3:-7106716 | MS.gene051541:CDS |
| TAAGAAGAAAACAAAAGCTA+TGG | 0.539495 | 1.3:-7106549 | MS.gene051541:CDS |
| CATTTGCTAGATTGAAAGGT+AGG | 0.539789 | 1.3:-7105542 | MS.gene051541:CDS |
| TGATCATCAGGCATTGAACC+AGG | 0.554947 | 1.3:+7105756 | None:intergenic |
| TGAAGGATCGTTCAGGAGCA+TGG | 0.560723 | 1.3:-7106319 | MS.gene051541:CDS |
| CAGGTATTCCAAATGTTGTA+GGG | 0.561344 | 1.3:-7105941 | MS.gene051541:CDS |
| AATCTTACTTGGACACAACA+TGG | 0.563523 | 1.3:-7105609 | MS.gene051541:CDS |
| TTTCAAAGGGCTAATAATGG+AGG | 0.570430 | 1.3:-7105711 | MS.gene051541:CDS |
| GGATCGTTCAGGAGCATGGT+GGG | 0.571189 | 1.3:-7106315 | MS.gene051541:CDS |
| AGTGGTAAATCTAATGGTGG+TGG | 0.574512 | 1.3:-7106362 | MS.gene051541:CDS |
| CATAACATTTGTGAGATGAA+AGG | 0.582865 | 1.3:-7105444 | MS.gene051541:CDS |
| TGGAACATGTGATGTATACA+TGG | 0.583023 | 1.3:+7105917 | None:intergenic |
| ATGGTGGTGGTTCACAGAGA+AGG | 0.584341 | 1.3:-7106349 | MS.gene051541:CDS |
| GGTTCAATCAATGAAGGAGG+TGG | 0.597376 | 1.3:-7106710 | MS.gene051541:CDS |
| TTGCTAGATTGAAAGGTAGG+TGG | 0.638704 | 1.3:-7105539 | MS.gene051541:CDS |
| AATGTTAATGATGTTAACAG+TGG | 0.645570 | 1.3:-7106380 | MS.gene051541:CDS |
| AGATAGCAAGAAAGTCTCAG+AGG | 0.655824 | 1.3:-7106600 | MS.gene051541:CDS |
| GATGATGATGAAGATCATGA+TGG | 0.669772 | 1.3:-7106731 | MS.gene051541:CDS |
| GATGGTTCAATCAATGAAGG+AGG | 0.671209 | 1.3:-7106713 | MS.gene051541:CDS |
| AGGATCGTTCAGGAGCATGG+TGG | 0.682307 | 1.3:-7106316 | MS.gene051541:CDS |
| AACAGTGGTAAATCTAATGG+TGG | 0.686560 | 1.3:-7106365 | MS.gene051541:CDS |
| TTAACAAGAGACATACTGAG+AGG | 0.717249 | 1.3:-7105860 | MS.gene051541:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATTAAGAATGAGTTTG+AGG | - | chr1.3:7106126-7106145 | MS.gene051541:CDS | 20.0% |
| !! | AAAATTAAGAATGAGTTTGA+GGG | - | chr1.3:7106127-7106146 | MS.gene051541:CDS | 20.0% |
| !!! | TTTAAGAAAGCATTTAGAAT+GGG | - | chr1.3:7105839-7105858 | MS.gene051541:CDS | 20.0% |
| ! | AACAAGAAGGAAGAAATAAA+GGG | - | chr1.3:7105422-7105441 | MS.gene051541:CDS | 25.0% |
| ! | AATGTTAATGATGTTAACAG+TGG | - | chr1.3:7105716-7105735 | MS.gene051541:CDS | 25.0% |
| ! | AGAATTGTTTCAAAAAGGTT+TGG | - | chr1.3:7105998-7106017 | MS.gene051541:CDS | 25.0% |
| ! | ATACTCAACAAAATCTTACT+TGG | - | chr1.3:7106476-7106495 | MS.gene051541:CDS | 25.0% |
| ! | CTCTTAGAATTGTTTCAAAA+AGG | - | chr1.3:7105993-7106012 | MS.gene051541:CDS | 25.0% |
| ! | TAAGAAGAAAACAAAAGCTA+TGG | - | chr1.3:7105547-7105566 | MS.gene051541:CDS | 25.0% |
| ! | TCATATTCAATAACTGTTCA+AGG | - | chr1.3:7106271-7106290 | MS.gene051541:CDS | 25.0% |
| !! | GTAAGATTTTGTTGAGTATA+AGG | + | chr1.3:7106475-7106494 | None:intergenic | 25.0% |
| !!! | AAAAATCAGCACTTTTTCAA+AGG | - | chr1.3:7106371-7106390 | MS.gene051541:CDS | 25.0% |
| !!! | AAAATCAGCACTTTTTCAAA+GGG | - | chr1.3:7106372-7106391 | MS.gene051541:CDS | 25.0% |
| !!! | AATTTTGAAGCAAATAGTGA+AGG | - | chr1.3:7105689-7105708 | MS.gene051541:CDS | 25.0% |
| !!! | CTTTTTGAAACAATTCTAAG+AGG | + | chr1.3:7105995-7106014 | None:intergenic | 25.0% |
| !!! | GTTTAAGAAAGCATTTAGAA+TGG | - | chr1.3:7105838-7105857 | MS.gene051541:CDS | 25.0% |
| !!! | TGATATTGTTGATGATGAAA+TGG | - | chr1.3:7106702-7106721 | MS.gene051541:CDS | 25.0% |
| AAGAATCAGAGAAAGTTAGA+AGG | - | chr1.3:7105612-7105631 | MS.gene051541:CDS | 30.0% | |
| ACAATATCAACCATAAGTTC+AGG | + | chr1.3:7106691-7106710 | None:intergenic | 30.0% | |
| ACTAAAACCCAATCCATTAA+AGG | + | chr1.3:7106451-7106470 | None:intergenic | 30.0% | |
| ACTATAACCATCTTCAAGAT+TGG | + | chr1.3:7105585-7105604 | None:intergenic | 30.0% | |
| CAAAAACAAGAAGAACAAGA+AGG | - | chr1.3:7105409-7105428 | MS.gene051541:CDS | 30.0% | |
| CATAACATTTGTGAGATGAA+AGG | - | chr1.3:7106652-7106671 | MS.gene051541:CDS | 30.0% | |
| CTAATCTTAGGAGCTATAAT+TGG | + | chr1.3:7106202-7106221 | None:intergenic | 30.0% | |
| GAACAAGAAGGAAGAAATAA+AGG | - | chr1.3:7105421-7105440 | MS.gene051541:CDS | 30.0% | |
| GAGATCTGTTAATTCATTGA+AGG | - | chr1.3:7106741-7106760 | MS.gene051541:CDS | 30.0% | |
| GTTAACAGTGGTAAATCTAA+TGG | - | chr1.3:7105728-7105747 | MS.gene051541:CDS | 30.0% | |
| TATTACTCCAATCTTGAAGA+TGG | - | chr1.3:7105575-7105594 | MS.gene051541:CDS | 30.0% | |
| TTATGCCTAAGTATCTTCAA+TGG | - | chr1.3:7106083-7106102 | MS.gene051541:CDS | 30.0% | |
| ! | AATAATGGAGGACTTCTTAA+AGG | - | chr1.3:7106397-7106416 | MS.gene051541:CDS | 30.0% |
| ! | GTTTCAAAAAGGTTTGGTTT+AGG | - | chr1.3:7106004-7106023 | MS.gene051541:CDS | 30.0% |
| ! | GTTTTCACTGATGTTTGTAT+TGG | - | chr1.3:7106313-7106332 | MS.gene051541:CDS | 30.0% |
| ! | TTTTCTAACACTTGATCATC+AGG | + | chr1.3:7106355-7106374 | None:intergenic | 30.0% |
| !! | TTTCTCAAAGAAGCATCATT+AGG | + | chr1.3:7106109-7106128 | None:intergenic | 30.0% |
| !!! | CTTTTTCAAAGGGCTAATAA+TGG | - | chr1.3:7106382-7106401 | MS.gene051541:CDS | 30.0% |
| AAAGAGTAGCTGTTTGTCTT+TGG | - | chr1.3:7105951-7105970 | MS.gene051541:CDS | 35.0% | |
| AACAGTGGTAAATCTAATGG+TGG | - | chr1.3:7105731-7105750 | MS.gene051541:CDS | 35.0% | |
| AATCTTACTTGGACACAACA+TGG | - | chr1.3:7106487-7106506 | MS.gene051541:CDS | 35.0% | |
| ACAGATCTCAAACTAACTTC+AGG | + | chr1.3:7106730-7106749 | None:intergenic | 35.0% | |
| AGACGCAGAAAAAATGAAGA+TGG | - | chr1.3:7105338-7105357 | MS.gene051541:CDS | 35.0% | |
| CAGGTATTCCAAATGTTGTA+GGG | - | chr1.3:7106155-7106174 | MS.gene051541:CDS | 35.0% | |
| CATGATGGTTCAATCAATGA+AGG | - | chr1.3:7105380-7105399 | MS.gene051541:CDS | 35.0% | |
| CATGGTTTCAATGAGAAGAT+TGG | - | chr1.3:7106505-7106524 | MS.gene051541:CDS | 35.0% | |
| GAAAATGGATCCTGAACTTA+TGG | - | chr1.3:7106678-7106697 | MS.gene051541:CDS | 35.0% | |
| GCTTTCTTAAACTCATGTTC+AGG | + | chr1.3:7105830-7105849 | None:intergenic | 35.0% | |
| TAAGCAGCAACACTAATCTT+AGG | + | chr1.3:7106214-7106233 | None:intergenic | 35.0% | |
| TCAGGTATTCCAAATGTTGT+AGG | - | chr1.3:7106154-7106173 | MS.gene051541:CDS | 35.0% | |
| TGAGATGAAAGGTGAGAAAA+TGG | - | chr1.3:7106663-7106682 | MS.gene051541:CDS | 35.0% | |
| TGGAACATGTGATGTATACA+TGG | + | chr1.3:7106182-7106201 | None:intergenic | 35.0% | |
| TTAACAAGAGACATACTGAG+AGG | - | chr1.3:7106236-7106255 | MS.gene051541:CDS | 35.0% | |
| TTAGGCCATTGAAGATACTT+AGG | + | chr1.3:7106091-7106110 | None:intergenic | 35.0% | |
| TTTCAAAGGGCTAATAATGG+AGG | - | chr1.3:7106385-7106404 | MS.gene051541:CDS | 35.0% | |
| ! | CATTTGCTAGATTGAAAGGT+AGG | - | chr1.3:7106554-7106573 | MS.gene051541:CDS | 35.0% |
| ! | GATGATGATGAAGATCATGA+TGG | - | chr1.3:7105365-7105384 | MS.gene051541:CDS | 35.0% |
| ! | GATGCATTTGCTAGATTGAA+AGG | - | chr1.3:7106550-7106569 | MS.gene051541:CDS | 35.0% |
| ! | GCTCATAATCTTTTGCATCA+TGG | - | chr1.3:7106778-7106797 | MS.gene051541:CDS | 35.0% |
| ! | TAGTTCAGGGTATCCTTTAA+TGG | - | chr1.3:7106435-7106454 | MS.gene051541:CDS | 35.0% |
| ! | TCACTGATGTTTGTATTGGT+TGG | - | chr1.3:7106317-7106336 | MS.gene051541:CDS | 35.0% |
| !! | AGGGTATCCTTTAATGGATT+GGG | - | chr1.3:7106441-7106460 | MS.gene051541:CDS | 35.0% |
| !! | CAAGGTGTTGTTGATACAAA+TGG | - | chr1.3:7106289-7106308 | MS.gene051541:CDS | 35.0% |
| !! | CTTAAAGGTGTTTGGATTGT+TGG | - | chr1.3:7106412-7106431 | MS.gene051541:CDS | 35.0% |
| !! | TTTGGATTGTTGGTAGTTCA+GGG | - | chr1.3:7106422-7106441 | MS.gene051541:CDS | 35.0% |
| AGATAGCAAGAAAGTCTCAG+AGG | - | chr1.3:7105496-7105515 | MS.gene051541:CDS | 40.0% | |
| AGTGGTAAATCTAATGGTGG+TGG | - | chr1.3:7105734-7105753 | MS.gene051541:CDS | 40.0% | |
| CAAGATTTGCCTGTTGTACT+TGG | - | chr1.3:7106613-7106632 | MS.gene051541:CDS | 40.0% | |
| CGCAGAAAAAATGAAGATGG+TGG | - | chr1.3:7105341-7105360 | MS.gene051541:CDS | 40.0% | |
| GATGGTTCAATCAATGAAGG+AGG | - | chr1.3:7105383-7105402 | MS.gene051541:CDS | 40.0% | |
| TACATGGACCCTACAACATT+TGG | + | chr1.3:7106166-7106185 | None:intergenic | 40.0% | |
| TTGCTAGATTGAAAGGTAGG+TGG | - | chr1.3:7106557-7106576 | MS.gene051541:CDS | 40.0% | |
| ! | AATGAGTTTGAGGGTATGTC+AGG | - | chr1.3:7106136-7106155 | MS.gene051541:CDS | 40.0% |
| ! | CAGGGTATCCTTTAATGGAT+TGG | - | chr1.3:7106440-7106459 | MS.gene051541:CDS | 40.0% |
| ! | CTTTTGCATCATGGTTTAGC+AGG | - | chr1.3:7106787-7106806 | MS.gene051541:CDS | 40.0% |
| ! | GTTGAAGTAGCAGTGTTGTT+TGG | + | chr1.3:7105305-7105324 | None:intergenic | 40.0% |
| !! | GAGGACTTCTTAAAGGTGTT+TGG | - | chr1.3:7106404-7106423 | MS.gene051541:CDS | 40.0% |
| !! | GTTTGGATTGTTGGTAGTTC+AGG | - | chr1.3:7106421-7106440 | MS.gene051541:CDS | 40.0% |
| ACAGCTACTCTTTGTCTCAC+TGG | + | chr1.3:7105944-7105963 | None:intergenic | 45.0% | |
| CAACAAGCACCAAGTACAAC+AGG | + | chr1.3:7106625-7106644 | None:intergenic | 45.0% | |
| GAGTAGCTGTTTGTCTTTGG+AGG | - | chr1.3:7105954-7105973 | MS.gene051541:CDS | 45.0% | |
| GGTTCAATCAATGAAGGAGG+TGG | - | chr1.3:7105386-7105405 | MS.gene051541:CDS | 45.0% | |
| TGGTTCACAGAGAAGGCTTT+GGG | - | chr1.3:7105754-7105773 | MS.gene051541:CDS | 45.0% | |
| ! | TGTCTTTGGAGGTTAGCAAC+AGG | - | chr1.3:7105965-7105984 | MS.gene051541:CDS | 45.0% |
| !! | GATGTTTGTATTGGTTGGCC+TGG | - | chr1.3:7106322-7106341 | MS.gene051541:CDS | 45.0% |
| !! | GGTGGTCTTGTTTGCAGAAA+AGG | - | chr1.3:7106575-7106594 | MS.gene051541:CDS | 45.0% |
| !! | TGATCATCAGGCATTGAACC+AGG | + | chr1.3:7106343-7106362 | None:intergenic | 45.0% |
| CTTTGGGTGAAGGATCGTTC+AGG | - | chr1.3:7105770-7105789 | MS.gene051541:CDS | 50.0% | |
| GTGGTTCACAGAGAAGGCTT+TGG | - | chr1.3:7105753-7105772 | MS.gene051541:CDS | 50.0% | |
| TGAAGGATCGTTCAGGAGCA+TGG | - | chr1.3:7105777-7105796 | MS.gene051541:CDS | 50.0% | |
| !! | ACAGAGAAGGCTTTGGGTGA+AGG | - | chr1.3:7105760-7105779 | MS.gene051541:CDS | 50.0% |
| !! | ATGGTGGTGGTTCACAGAGA+AGG | - | chr1.3:7105747-7105766 | MS.gene051541:CDS | 50.0% |
| ! | AGGATCGTTCAGGAGCATGG+TGG | - | chr1.3:7105780-7105799 | MS.gene051541:CDS | 55.0% |
| ! | GGATCGTTCAGGAGCATGGT+GGG | - | chr1.3:7105781-7105800 | MS.gene051541:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 7105293 | 7106825 | 7105293 | ID=MS.gene051541 |
| chr1.3 | mRNA | 7105293 | 7106825 | 7105293 | ID=MS.gene051541.t1;Parent=MS.gene051541 |
| chr1.3 | exon | 7105293 | 7106825 | 7105293 | ID=MS.gene051541.t1.exon1;Parent=MS.gene051541.t1 |
| chr1.3 | CDS | 7105293 | 7106825 | 7105293 | ID=cds.MS.gene051541.t1;Parent=MS.gene051541.t1 |
| Gene Sequence |
| Protein sequence |
