AlfalfaGEDB | MS.gene83683

M. sativa cultivar XinJiangDaYe / MS.gene83683

KEGG: -
GO: -
PFAM: PF03350.19

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83683.t1	XP_003612502.1	95.1	267	13	0	1	267	1	267	4.40E-132	480.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83683.t1	G7K428	95.1	267	13	0	1	267	1	267	3.1e-132	480.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050508	MS.gene83683	0.832034	1.19E-55	-1.69E-46
MS.gene050642	MS.gene83683	0.80872	2.70E-50	-1.69E-46
MS.gene050936	MS.gene83683	0.809628	1.72E-50	-1.69E-46
MS.gene051064	MS.gene83683	0.802232	6.19E-49	-1.69E-46
MS.gene051983	MS.gene83683	0.803457	3.45E-49	-1.69E-46
MS.gene052590	MS.gene83683	0.814982	1.17E-51	-1.69E-46
MS.gene053330	MS.gene83683	0.80668	7.31E-50	-1.69E-46
MS.gene056305	MS.gene83683	0.804091	2.55E-49	-1.69E-46
MS.gene059247	MS.gene83683	0.803636	3.17E-49	-1.69E-46
MS.gene059710	MS.gene83683	0.8451	5.01E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83683.t1	MTR_5g025750	95.131	267	13	0	1	267	1	267	1.00e-163	454
MS.gene83683.t1	MTR_4g068770	44.762	210	107	3	64	267	56	262	1.49e-55	179
MS.gene83683.t1	MTR_4g082590	38.983	177	94	3	95	265	123	291	1.06e-39	139

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene83683.t1	AT4G19390	65.746	181	62	0	87	267	93	273	1.77e-83	251
MS.gene83683.t1	AT4G19390	65.698	172	59	0	96	267	14	185	1.96e-79	238
MS.gene83683.t1	AT5G13720	49.198	187	79	4	92	267	80	261	2.26e-53	174

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Find 46 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGACTCTGCAACAAATG+TGG	0.581983	5.4:+16832982	None:intergenic
AACAGAATCAAAACCCGAAT+TGG	0.359828	5.4:+16834160	None:intergenic
AAGTTAGAAGGCATAGAAGA+AGG	0.553417	5.4:-16834113	MS.gene83683:CDS
AATAGATTTGATCTATCAGA+AGG	0.529196	5.4:+16832508	None:intergenic
AATGAACTGAAAACCAAGGT+TGG	0.611400	5.4:-16832315	MS.gene83683:CDS
AATTCTATATTCAGCTCATA+TGG	0.410293	5.4:-16834302	MS.gene83683:CDS
AGTGAATGAACTGAAAACCA+AGG	0.699304	5.4:-16832319	MS.gene83683:CDS
ATAGTGATGCTGCTTCTGAT+TGG	0.427966	5.4:-16832285	MS.gene83683:CDS
ATCAATTCTATGCTTCATCA+AGG	0.516481	5.4:-16833577	MS.gene83683:intron
ATTCAGCTCATATGGCAAAA+GGG	0.535020	5.4:-16834294	MS.gene83683:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGAATAGTAACTACAAGT+GGG	-	chr5.4:16833097-16833116	MS.gene83683:intron	30.0%
ATCAATTCTATGCTTCATCA+AGG	-	chr5.4:16832955-16832974	MS.gene83683:CDS	30.0%
CATTATTCAATTTGACATGC+AGG	-	chr5.4:16833524-16833543	MS.gene83683:intron	30.0%
CTGATACCGTGTTAAAATTT+AGG	-	chr5.4:16833748-16833767	MS.gene83683:intron	30.0%
GATTATTCACTTTCTCAAAC+TGG	-	chr5.4:16833423-16833442	MS.gene83683:intron	30.0%
GTTAGGCTTAAATTTGAAGA+TGG	-	chr5.4:16833809-16833828	MS.gene83683:intron	30.0%
TGACAGTGAATTAAAGATGA+TGG	+	chr5.4:16832209-16832228	None:intergenic	30.0%
TGTAGGTGATTTATAGATGT+CGG	-	chr5.4:16832894-16832913	MS.gene83683:intron	30.0%
TGTGATTCTCTTCTTTCTAA+CGG	-	chr5.4:16833880-16833899	MS.gene83683:intron	30.0%
TTCTTCTTCGTTGTAATCAT+TGG	-	chr5.4:16832739-16832758	MS.gene83683:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	16832161	16834393	16832161	ID=MS.gene83683
chr5.4	mRNA	16832161	16834393	16832161	ID=MS.gene83683.t1;Parent=MS.gene83683
chr5.4	exon	16834103	16834393	16834103	ID=MS.gene83683.t1.exon1;Parent=MS.gene83683.t1
chr5.4	CDS	16834103	16834393	16834103	ID=cds.MS.gene83683.t1;Parent=MS.gene83683.t1
chr5.4	exon	16833578	16833655	16833578	ID=MS.gene83683.t1.exon2;Parent=MS.gene83683.t1
chr5.4	CDS	16833578	16833655	16833578	ID=cds.MS.gene83683.t1;Parent=MS.gene83683.t1
chr5.4	exon	16832927	16833008	16832927	ID=MS.gene83683.t1.exon3;Parent=MS.gene83683.t1
chr5.4	CDS	16832927	16833008	16832927	ID=cds.MS.gene83683.t1;Parent=MS.gene83683.t1
chr5.4	exon	16832489	16832631	16832489	ID=MS.gene83683.t1.exon4;Parent=MS.gene83683.t1
chr5.4	CDS	16832489	16832631	16832489	ID=cds.MS.gene83683.t1;Parent=MS.gene83683.t1
chr5.4	exon	16832161	16832370	16832161	ID=MS.gene83683.t1.exon5;Parent=MS.gene83683.t1
chr5.4	CDS	16832161	16832370	16832161	ID=cds.MS.gene83683.t1;Parent=MS.gene83683.t1

Gene Sequence

>MS.gene83683

ATGAAACTTTCTCAGGCATTGGTGCAGAAACCATTTACGATAACACCATCATCTTTAATTCACTGTCAAAATTCTATATTCAGCTCATATGGCAAAAGGGTCTCTGTGTTGGGATATAAGAGTTTCAGGTTTTCAGATTTTGTGTGCAGTAGTAGTTCAGAAGCTTCTGTTTCTTCATCTGCTGTGAATCCGTCATCGCCGCTTGTTGCTTCCAATTCGGGTTTTGATTCTGTTGTATCTCATCAGGAGATGCCAGGGAAGTTAGAAGGCATAGAAGAAGGCATTGAGAAGGTAATATTAGCTATGTGTCGATAAATAACTTATTTGCAGCTTATAACACGAGCTCTTATCATGATACGCACTTATGTATAGATTATTTCTATAGCAAGTTAAATTTTAAGCTGTTTTAAGTAGTTAATTAGGAGAACTTATGAAAATAAGCTGAAAACGGCTTATGAAAAATGTCATAAGCTGTTTTCATAAGTTCTACAAAACAGTCTTAAAAAACTTATGTTAGTAGATAAGCTCAAATAAGCCGATCCAAACTGGTTGTAAGACATGTGTTGAGAGTTTGTGGTTTCTTCTTCGTTGTAATCATTGGTTTGATTTGGTTATTCAAGTATTCAAAATTATGCATGACTGATGAATACAATTGAGCCTTTAATTGTTTGTTATTATCTATGAATAGTTTTGAATTTGGATTTCTAACTGTTGATGTTTTTCTGATGTATTGTGTAGGTGATTTATAGATGTCGGTTTCTTGCTATTCTTGGAGTTTTTGGGTCTTTGATTGGATCAATTCTATGCTTCATCAAGGTATCAATTTCAAACTTTAATTATAAGTTGTATCTGATCAAATTTACCAAAAAAAAAAAAAAAACAAGACTACATGATTCTAGTTTTGTGCACCTTTAATAGTATGCTTTTGTGATTTGGACTGAATAGTAACTACAAGTGGGACAATCCTCAATGATGAGCTAGCTTTTAGTGTTTAATCAGTACCAGATTCTAATATGCTATCATAGCTTAATTGTCCTAGATCCCTGTAAATGTGCAGTCCTGTGAATTTCACGCTCCGGATGTCTAGTCCTACAAACCTCACCATATGAGATAGCTTTTAGAGTTGAGTTAAGCTGGAACCCAAATTTAGTTAAGCAAATCTCAACCAATTCGTAAGTACATGTCAGGCTTAACCCTTGGTACGAATTAAGGAAAGTGTGCATATTTGTAATTCGAAAACTTAAGTAACTTCATGCTCCGAAGATTATTCACTTTCTCAAACTGGGTGAATCAATTGAACAAGTTTCGAAAAATTAAGCAATATTACAATCAGTGTGCTATGTTGATGAATTTTGTTTTAATACATTATTCAATTTGACATGCAGGGCTCCACATTTGTTGCAGAGTCTTTTTTGGGATACTTGGTAAACCGTAGTAAAGTAATTCAATTGCTGATAGAAGCTCTTGGTGAGTGTCTCTAAAGTTAAACTCCTAAAAGTTTGTATAATTTGTTTCTTGTTCTATTTCTTAACTATGTAACACATAATTCTTCATATAATCAACTTGGATAGCCCGAATCGATAGGCTCTGATACCGTGTTAAAATTTAGGTCTAACTCATCTTTATAAAGCCAGTTTTGTAACGATGAGTTAGGCTTAAATTTGAAGATGGTATTCCTACTTTTGTGTTAGTGTTGTCATTGTTCTAAGAGGATTTATTTGTGATTCTCTTCTTTCTAACGGCTACTTCATTGTTCATGTAGATCTCTATCTTTTAGGAACGGTGATGCTAGTCTTTGGAATGGGTCTCTATGAGCTCTTTGTGAGTAATCTTGATAGTGCAAGCTCTCTGTCAGATCAAAAACCTTCTGATAGATCAAATCTATTTGGCTTATTCACTTTGAAGGTTAGCTTTTAGACATTCTTTTTCCTAGTCAACCTTATCAAAGTCAGTAGGATTTAGTGGTATTGCTACTGCCTCTCTGCTGCATTTTGATGCTAATTCCAATGTTTCTCCTTCTCAGGAACGACCAAAATGGTTGAATATAAAAACAGTGAATGAACTGAAAACCAAGGTTGGTCATGTGATAGTGATGCTGCTTCTGATTGGTTTGTTTGACAGAAGTAAGAAGGCTACCATTCAAACTCCTGTGGATTTGCTATGCTTCTGTGCTTCTGTCTTTCTTTCTTCTAGCTGTCTCTTTTTGCTGTCCAAGCTGAATGAGGCTAATTAA

Protein sequence

>MS.gene83683.t1

MKLSQALVQKPFTITPSSLIHCQNSIFSSYGKRVSVLGYKSFRFSDFVCSSSSEASVSSSAVNPSSPLVASNSGFDSVVSHQEMPGKLEGIEEGIEKVIYRCRFLAILGVFGSLIGSILCFIKGSTFVAESFLGYLVNRSKVIQLLIEALDLYLLGTVMLVFGMGLYELFVSNLDSASSLSDQKPSDRSNLFGLFTLKERPKWLNIKTVNELKTKVGHVIVMLLLIGLFDRSKKATIQTPVDLLCFCASVFLSSSCLFLLSKLNEAN