Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83683.t1 | XP_003612502.1 | 95.1 | 267 | 13 | 0 | 1 | 267 | 1 | 267 | 4.40E-132 | 480.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83683.t1 | G7K428 | 95.1 | 267 | 13 | 0 | 1 | 267 | 1 | 267 | 3.1e-132 | 480.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050508 | MS.gene83683 | 0.832034 | 1.19E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene83683 | 0.80872 | 2.70E-50 | -1.69E-46 |
| MS.gene050936 | MS.gene83683 | 0.809628 | 1.72E-50 | -1.69E-46 |
| MS.gene051064 | MS.gene83683 | 0.802232 | 6.19E-49 | -1.69E-46 |
| MS.gene051983 | MS.gene83683 | 0.803457 | 3.45E-49 | -1.69E-46 |
| MS.gene052590 | MS.gene83683 | 0.814982 | 1.17E-51 | -1.69E-46 |
| MS.gene053330 | MS.gene83683 | 0.80668 | 7.31E-50 | -1.69E-46 |
| MS.gene056305 | MS.gene83683 | 0.804091 | 2.55E-49 | -1.69E-46 |
| MS.gene059247 | MS.gene83683 | 0.803636 | 3.17E-49 | -1.69E-46 |
| MS.gene059710 | MS.gene83683 | 0.8451 | 5.01E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83683.t1 | MTR_5g025750 | 95.131 | 267 | 13 | 0 | 1 | 267 | 1 | 267 | 1.00e-163 | 454 |
| MS.gene83683.t1 | MTR_4g068770 | 44.762 | 210 | 107 | 3 | 64 | 267 | 56 | 262 | 1.49e-55 | 179 |
| MS.gene83683.t1 | MTR_4g082590 | 38.983 | 177 | 94 | 3 | 95 | 265 | 123 | 291 | 1.06e-39 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene83683.t1 | AT4G19390 | 65.746 | 181 | 62 | 0 | 87 | 267 | 93 | 273 | 1.77e-83 | 251 |
| MS.gene83683.t1 | AT4G19390 | 65.698 | 172 | 59 | 0 | 96 | 267 | 14 | 185 | 1.96e-79 | 238 |
| MS.gene83683.t1 | AT5G13720 | 49.198 | 187 | 79 | 4 | 92 | 267 | 80 | 261 | 2.26e-53 | 174 |
Find 46 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATGGTGTTATCGTAAA+TGG | 0.175867 | 5.4:+16834341 | None:intergenic |
| TGTTGGGATATAAGAGTTTC+AGG | 0.199603 | 5.4:-16834265 | MS.gene83683:CDS |
| TCTGATAGATCAAATCTATT+TGG | 0.202531 | 5.4:-16832505 | MS.gene83683:CDS |
| CCGCTTGTTGCTTCCAATTC+GGG | 0.241751 | 5.4:-16834173 | MS.gene83683:CDS |
| TGTCGGTTTCTTGCTATTCT+TGG | 0.241873 | 5.4:-16833621 | MS.gene83683:CDS |
| GCCGCTTGTTGCTTCCAATT+CGG | 0.314099 | 5.4:-16834174 | MS.gene83683:CDS |
| GGAACGGTGATGCTAGTCTT+TGG | 0.339539 | 5.4:-16832595 | MS.gene83683:CDS |
| AACAGAATCAAAACCCGAAT+TGG | 0.359828 | 5.4:+16834160 | None:intergenic |
| CTTCTCAGGAACGACCAAAA+TGG | 0.370797 | 5.4:-16832356 | MS.gene83683:intron |
| TGATTCTGTTGTATCTCATC+AGG | 0.392515 | 5.4:-16834147 | MS.gene83683:CDS |
| AATTCTATATTCAGCTCATA+TGG | 0.410293 | 5.4:-16834302 | MS.gene83683:CDS |
| ATTTGGCTTATTCACTTTGA+AGG | 0.417143 | 5.4:-16832488 | MS.gene83683:intron |
| TATTCAGCTCATATGGCAAA+AGG | 0.425103 | 5.4:-16834295 | MS.gene83683:CDS |
| ATAGTGATGCTGCTTCTGAT+TGG | 0.427966 | 5.4:-16832285 | MS.gene83683:CDS |
| CAATGCCTGAGAAAGTTTCA+TGG | 0.433779 | 5.4:+16834373 | None:intergenic |
| GGCAAAAGGGTCTCTGTGTT+GGG | 0.437813 | 5.4:-16834281 | MS.gene83683:CDS |
| TCTATGCCTTCTAACTTCCC+TGG | 0.450735 | 5.4:+16834119 | None:intergenic |
| GAGATGCCAGGGAAGTTAGA+AGG | 0.458831 | 5.4:-16834125 | MS.gene83683:CDS |
| CATGAAACTTTCTCAGGCAT+TGG | 0.473115 | 5.4:-16834372 | MS.gene83683:CDS |
| TTTGTTTGACAGAAGTAAGA+AGG | 0.477435 | 5.4:-16832262 | MS.gene83683:CDS |
| TGGCAAAAGGGTCTCTGTGT+TGG | 0.477475 | 5.4:-16834282 | MS.gene83683:CDS |
| TGTAGGTGATTTATAGATGT+CGG | 0.486045 | 5.4:-16833638 | MS.gene83683:intron |
| TGACAGTGAATTAAAGATGA+TGG | 0.495193 | 5.4:+16834326 | None:intergenic |
| CACTATCACATGACCAACCT+TGG | 0.497716 | 5.4:+16832302 | None:intergenic |
| CCCAACCATGAAACTTTCTC+AGG | 0.502486 | 5.4:-16834378 | None:intergenic |
| TTTGCTGTCCAAGCTGAATG+AGG | 0.509196 | 5.4:-16832169 | MS.gene83683:CDS |
| TTAATTAGCCTCATTCAGCT+TGG | 0.510184 | 5.4:+16832161 | None:intergenic |
| CAAATCCACAGGAGTTTGAA+TGG | 0.513144 | 5.4:+16832236 | None:intergenic |
| ATCAATTCTATGCTTCATCA+AGG | 0.516481 | 5.4:-16833577 | MS.gene83683:intron |
| GTATCTCATCAGGAGATGCC+AGG | 0.523169 | 5.4:-16834137 | MS.gene83683:CDS |
| GCAATTGAATTACTTTACTA+CGG | 0.524763 | 5.4:+16832942 | None:intergenic |
| AATAGATTTGATCTATCAGA+AGG | 0.529196 | 5.4:+16832508 | None:intergenic |
| ATTCAGCTCATATGGCAAAA+GGG | 0.535020 | 5.4:-16834294 | MS.gene83683:CDS |
| GTGATGCTAGTCTTTGGAAT+GGG | 0.541127 | 5.4:-16832589 | MS.gene83683:CDS |
| GAAGCAACAAGCGGCGATGA+CGG | 0.551159 | 5.4:+16834182 | None:intergenic |
| AAGTTAGAAGGCATAGAAGA+AGG | 0.553417 | 5.4:-16834113 | MS.gene83683:CDS |
| CAGAAGCATAGCAAATCCAC+AGG | 0.569222 | 5.4:+16832225 | None:intergenic |
| GGTGATGCTAGTCTTTGGAA+TGG | 0.578084 | 5.4:-16832590 | MS.gene83683:CDS |
| AAAAGACTCTGCAACAAATG+TGG | 0.581983 | 5.4:+16832982 | None:intergenic |
| CAATTGCTGATAGAAGCTCT+TGG | 0.584191 | 5.4:-16832926 | MS.gene83683:intron |
| CATAGAAGAAGGCATTGAGA+AGG | 0.605938 | 5.4:-16834102 | MS.gene83683:intron |
| AATGAACTGAAAACCAAGGT+TGG | 0.611400 | 5.4:-16832315 | MS.gene83683:CDS |
| GGCTACCATTCAAACTCCTG+TGG | 0.627628 | 5.4:-16832241 | MS.gene83683:CDS |
| TATCTCATCAGGAGATGCCA+GGG | 0.638918 | 5.4:-16834136 | MS.gene83683:CDS |
| CCCGAATTGGAAGCAACAAG+CGG | 0.640431 | 5.4:+16834173 | None:intergenic |
| AGTGAATGAACTGAAAACCA+AGG | 0.699304 | 5.4:-16832319 | MS.gene83683:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCTTGTTTTTTTTTTTTTTT+TGG | + | chr5.4:16833026-16833045 | None:intergenic | 10.0% |
| !! | AGATAATAACAAACAATTAA+AGG | + | chr5.4:16832821-16832840 | None:intergenic | 15.0% |
| !!! | AACAAATTATACAAACTTTT+AGG | + | chr5.4:16833654-16833673 | None:intergenic | 15.0% |
| !! | AATTCTTCATATAATCAACT+TGG | - | chr5.4:16833705-16833724 | MS.gene83683:intron | 20.0% |
| !! | TTATGAAAATAAGCTGAAAA+CGG | - | chr5.4:16832589-16832608 | MS.gene83683:CDS | 20.0% |
| !!! | AGATTTGCTTAACTAAATTT+GGG | + | chr5.4:16833303-16833322 | None:intergenic | 20.0% |
| !!! | GTTTTTATATTCAACCATTT+TGG | + | chr5.4:16834193-16834212 | None:intergenic | 20.0% |
| !!! | TCTATGAATAGTTTTGAATT+TGG | - | chr5.4:16832838-16832857 | MS.gene83683:intron | 20.0% |
| ! | AATAGATTTGATCTATCAGA+AGG | + | chr5.4:16834027-16834046 | None:intergenic | 25.0% |
| ! | AATTCTATATTCAGCTCATA+TGG | - | chr5.4:16832230-16832249 | MS.gene83683:CDS | 25.0% |
| ! | ATTATTCAATTTGACATGCA+GGG | - | chr5.4:16833525-16833544 | MS.gene83683:intron | 25.0% |
| ! | ATTATTCACTTTCTCAAACT+GGG | - | chr5.4:16833424-16833443 | MS.gene83683:intron | 25.0% |
| ! | GCAATTGAATTACTTTACTA+CGG | + | chr5.4:16833593-16833612 | None:intergenic | 25.0% |
| ! | TATGATAGCATATTAGAATC+TGG | + | chr5.4:16833165-16833184 | None:intergenic | 25.0% |
| ! | TCTGATAGATCAAATCTATT+TGG | - | chr5.4:16834027-16834046 | MS.gene83683:intron | 25.0% |
| ! | TTGAGAAAGTGAATAATCTT+CGG | + | chr5.4:16833421-16833440 | None:intergenic | 25.0% |
| !! | AATAGTATGCTTTTGTGATT+TGG | - | chr5.4:16833074-16833093 | MS.gene83683:intron | 25.0% |
| !! | GAGATTTGCTTAACTAAATT+TGG | + | chr5.4:16833304-16833323 | None:intergenic | 25.0% |
| !! | TCACAAAAGCATACTATTAA+AGG | + | chr5.4:16833072-16833091 | None:intergenic | 25.0% |
| !!! | GCTGTTTTAAGTAGTTAATT+AGG | - | chr5.4:16832561-16832580 | MS.gene83683:CDS | 25.0% |
| !!! | GTTAGACCTAAATTTTAACA+CGG | + | chr5.4:16833757-16833776 | None:intergenic | 25.0% |
| !!! | TTGTAATCATTGGTTTGATT+TGG | - | chr5.4:16832749-16832768 | MS.gene83683:intron | 25.0% |
| ACTGAATAGTAACTACAAGT+GGG | - | chr5.4:16833097-16833116 | MS.gene83683:intron | 30.0% | |
| ATCAATTCTATGCTTCATCA+AGG | - | chr5.4:16832955-16832974 | MS.gene83683:CDS | 30.0% | |
| CATTATTCAATTTGACATGC+AGG | - | chr5.4:16833524-16833543 | MS.gene83683:intron | 30.0% | |
| CTGATACCGTGTTAAAATTT+AGG | - | chr5.4:16833748-16833767 | MS.gene83683:intron | 30.0% | |
| GATTATTCACTTTCTCAAAC+TGG | - | chr5.4:16833423-16833442 | MS.gene83683:intron | 30.0% | |
| GTTAGGCTTAAATTTGAAGA+TGG | - | chr5.4:16833809-16833828 | MS.gene83683:intron | 30.0% | |
| TGACAGTGAATTAAAGATGA+TGG | + | chr5.4:16832209-16832228 | None:intergenic | 30.0% | |
| TGTAGGTGATTTATAGATGT+CGG | - | chr5.4:16832894-16832913 | MS.gene83683:intron | 30.0% | |
| TGTGATTCTCTTCTTTCTAA+CGG | - | chr5.4:16833880-16833899 | MS.gene83683:intron | 30.0% | |
| TTCTTCTTCGTTGTAATCAT+TGG | - | chr5.4:16832739-16832758 | MS.gene83683:intron | 30.0% | |
| TTTGTTTGACAGAAGTAAGA+AGG | - | chr5.4:16834270-16834289 | MS.gene83683:CDS | 30.0% | |
| ! | ACTCTAAAAGCTATCTCATA+TGG | + | chr5.4:16833265-16833284 | None:intergenic | 30.0% |
| ! | ATTTGGCTTATTCACTTTGA+AGG | - | chr5.4:16834044-16834063 | MS.gene83683:intron | 30.0% |
| ! | CATGTAGATCTCTATCTTTT+AGG | - | chr5.4:16833916-16833935 | MS.gene83683:intron | 30.0% |
| ! | GTTTTTCTGATGTATTGTGT+AGG | - | chr5.4:16832877-16832896 | MS.gene83683:intron | 30.0% |
| !! | AAATCCTACTGACTTTGATA+AGG | + | chr5.4:16834101-16834120 | None:intergenic | 30.0% |
| !! | AGATCTCTATCTTTTAGGAA+CGG | - | chr5.4:16833921-16833940 | MS.gene83683:intron | 30.0% |
| !! | TTGCTATTCTTGGAGTTTTT+GGG | - | chr5.4:16832921-16832940 | MS.gene83683:intron | 30.0% |
| !!! | ATTTGTTGCAGAGTCTTTTT+TGG | - | chr5.4:16833554-16833573 | MS.gene83683:intron | 30.0% |
| !!! | TTTGTTGCAGAGTCTTTTTT+GGG | - | chr5.4:16833555-16833574 | MS.gene83683:intron | 30.0% |
| AAAAGACTCTGCAACAAATG+TGG | + | chr5.4:16833553-16833572 | None:intergenic | 35.0% | |
| AAAAGCTATCTCATATGGTG+AGG | + | chr5.4:16833260-16833279 | None:intergenic | 35.0% | |
| AACAGAATCAAAACCCGAAT+TGG | + | chr5.4:16832375-16832394 | None:intergenic | 35.0% | |
| AATGAACTGAAAACCAAGGT+TGG | - | chr5.4:16834217-16834236 | MS.gene83683:CDS | 35.0% | |
| ACTTTCCTTAATTCGTACCA+AGG | + | chr5.4:16833358-16833377 | None:intergenic | 35.0% | |
| AGTGAATGAACTGAAAACCA+AGG | - | chr5.4:16834213-16834232 | MS.gene83683:CDS | 35.0% | |
| ATTCAGCTCATATGGCAAAA+GGG | - | chr5.4:16832238-16832257 | MS.gene83683:CDS | 35.0% | |
| CTAACTCATCGTTACAAAAC+TGG | + | chr5.4:16833794-16833813 | None:intergenic | 35.0% | |
| CTTTCCTTAATTCGTACCAA+GGG | + | chr5.4:16833357-16833376 | None:intergenic | 35.0% | |
| GACAACACTAACACAAAAGT+AGG | + | chr5.4:16833839-16833858 | None:intergenic | 35.0% | |
| GACTGAATAGTAACTACAAG+TGG | - | chr5.4:16833096-16833115 | MS.gene83683:intron | 35.0% | |
| TAAAAGCTAGCTCATCATTG+AGG | + | chr5.4:16833128-16833147 | None:intergenic | 35.0% | |
| TATTCAGCTCATATGGCAAA+AGG | - | chr5.4:16832237-16832256 | MS.gene83683:CDS | 35.0% | |
| TCAAAGTCAGTAGGATTTAG+TGG | - | chr5.4:16834103-16834122 | MS.gene83683:CDS | 35.0% | |
| TCAACCTTATCAAAGTCAGT+AGG | - | chr5.4:16834094-16834113 | MS.gene83683:intron | 35.0% | |
| TGACTTTGATAAGGTTGACT+AGG | + | chr5.4:16834092-16834111 | None:intergenic | 35.0% | |
| TGATTCTGTTGTATCTCATC+AGG | - | chr5.4:16832385-16832404 | MS.gene83683:intron | 35.0% | |
| TGTTGGGATATAAGAGTTTC+AGG | - | chr5.4:16832267-16832286 | MS.gene83683:CDS | 35.0% | |
| TTAACCCTTGGTACGAATTA+AGG | - | chr5.4:16833350-16833369 | MS.gene83683:intron | 35.0% | |
| ! | AAGTTAGAAGGCATAGAAGA+AGG | - | chr5.4:16832419-16832438 | MS.gene83683:intron | 35.0% |
| ! | AGTGTTGTCATTGTTCTAAG+AGG | - | chr5.4:16833850-16833869 | MS.gene83683:intron | 35.0% |
| ! | TTAATTAGCCTCATTCAGCT+TGG | + | chr5.4:16834374-16834393 | None:intergenic | 35.0% |
| !! | CAGTTTTGTAACGATGAGTT+AGG | - | chr5.4:16833792-16833811 | MS.gene83683:intron | 35.0% |
| !! | GATGATGGTGTTATCGTAAA+TGG | + | chr5.4:16832194-16832213 | None:intergenic | 35.0% |
| !!! | AGAGTCTTTTTTGGGATACT+TGG | - | chr5.4:16833563-16833582 | MS.gene83683:intron | 35.0% |
| !!! | CTTGCTATTCTTGGAGTTTT+TGG | - | chr5.4:16832920-16832939 | MS.gene83683:intron | 35.0% |
| !!! | CTTTTAGAGTTGAGTTAAGC+TGG | - | chr5.4:16833275-16833294 | MS.gene83683:intron | 35.0% |
| AGACATGTGTTGAGAGTTTG+TGG | - | chr5.4:16832715-16832734 | MS.gene83683:intron | 40.0% | |
| CAAATCCACAGGAGTTTGAA+TGG | + | chr5.4:16834299-16834318 | None:intergenic | 40.0% | |
| CAATTGCTGATAGAAGCTCT+TGG | - | chr5.4:16833606-16833625 | MS.gene83683:CDS | 40.0% | |
| CACATGTCTTACAACCAGTT+TGG | + | chr5.4:16832704-16832723 | None:intergenic | 40.0% | |
| CCAATTCGTAAGTACATGTC+AGG | - | chr5.4:16833326-16833345 | MS.gene83683:intron | 40.0% | |
| CCTGACATGTACTTACGAAT+TGG | + | chr5.4:16833329-16833348 | None:intergenic | 40.0% | |
| GTCTTACAACCAGTTTGGAT+CGG | + | chr5.4:16832699-16832718 | None:intergenic | 40.0% | |
| TCAAATAAGCCGATCCAAAC+TGG | - | chr5.4:16832687-16832706 | MS.gene83683:intron | 40.0% | |
| TCTCATATGGTGAGGTTTGT+AGG | + | chr5.4:16833252-16833271 | None:intergenic | 40.0% | |
| TTCCAATGTTTCTCCTTCTC+AGG | - | chr5.4:16834162-16834181 | MS.gene83683:CDS | 40.0% | |
| TTCCTGAGAAGGAGAAACAT+TGG | + | chr5.4:16834167-16834186 | None:intergenic | 40.0% | |
| ! | ATAGTGATGCTGCTTCTGAT+TGG | - | chr5.4:16834247-16834266 | MS.gene83683:CDS | 40.0% |
| !! | CATAGAAGAAGGCATTGAGA+AGG | - | chr5.4:16832430-16832449 | MS.gene83683:intron | 40.0% |
| !! | GTGATGCTAGTCTTTGGAAT+GGG | - | chr5.4:16833943-16833962 | MS.gene83683:intron | 40.0% |
| !! | TGTCGGTTTCTTGCTATTCT+TGG | - | chr5.4:16832911-16832930 | MS.gene83683:intron | 40.0% |
| !!! | GGAGTTTTTGGGTCTTTGAT+TGG | - | chr5.4:16832932-16832951 | MS.gene83683:CDS | 40.0% |
| AGCATCAAAATGCAGCAGAG+AGG | + | chr5.4:16834140-16834159 | None:intergenic | 45.0% | |
| CACAGGACTGCACATTTACA+GGG | + | chr5.4:16833205-16833224 | None:intergenic | 45.0% | |
| CACTATCACATGACCAACCT+TGG | + | chr5.4:16834233-16834252 | None:intergenic | 45.0% | |
| CTGCACATTTACAGGGATCT+AGG | + | chr5.4:16833198-16833217 | None:intergenic | 45.0% | |
| CTTCTCAGGAACGACCAAAA+TGG | - | chr5.4:16834176-16834195 | MS.gene83683:CDS | 45.0% | |
| GGTTTGTAGGACTAGACATC+CGG | + | chr5.4:16833239-16833258 | None:intergenic | 45.0% | |
| TACATGTCAGGCTTAACCCT+TGG | - | chr5.4:16833338-16833357 | MS.gene83683:intron | 45.0% | |
| TATCTCATCAGGAGATGCCA+GGG | - | chr5.4:16832396-16832415 | MS.gene83683:intron | 45.0% | |
| TCACAGGACTGCACATTTAC+AGG | + | chr5.4:16833206-16833225 | None:intergenic | 45.0% | |
| TCTATGCCTTCTAACTTCCC+TGG | + | chr5.4:16832416-16832435 | None:intergenic | 45.0% | |
| ! | CAGAAGCATAGCAAATCCAC+AGG | + | chr5.4:16834310-16834329 | None:intergenic | 45.0% |
| ! | GGTATCAGAGCCTATCGATT+CGG | + | chr5.4:16833736-16833755 | None:intergenic | 45.0% |
| ! | TTTGCTGTCCAAGCTGAATG+AGG | - | chr5.4:16834363-16834382 | MS.gene83683:CDS | 45.0% |
| !! | CATTTTGGTCGTTCCTGAGA+AGG | + | chr5.4:16834178-16834197 | None:intergenic | 45.0% |
| !! | GGTGATGCTAGTCTTTGGAA+TGG | - | chr5.4:16833942-16833961 | MS.gene83683:intron | 45.0% |
| !! | GTATCAGAGCCTATCGATTC+GGG | + | chr5.4:16833735-16833754 | None:intergenic | 45.0% |
| ATCCGGAGCGTGAAATTCAC+AGG | + | chr5.4:16833222-16833241 | None:intergenic | 50.0% | |
| CCCGAATTGGAAGCAACAAG+CGG | + | chr5.4:16832362-16832381 | None:intergenic | 50.0% | |
| CTTGGATAGCCCGAATCGAT+AGG | - | chr5.4:16833723-16833742 | MS.gene83683:intron | 50.0% | |
| GAGATGCCAGGGAAGTTAGA+AGG | - | chr5.4:16832407-16832426 | MS.gene83683:intron | 50.0% | |
| GGCAAAAGGGTCTCTGTGTT+GGG | - | chr5.4:16832251-16832270 | MS.gene83683:CDS | 50.0% | |
| GGCTACCATTCAAACTCCTG+TGG | - | chr5.4:16834291-16834310 | MS.gene83683:CDS | 50.0% | |
| GTATCTCATCAGGAGATGCC+AGG | - | chr5.4:16832395-16832414 | MS.gene83683:intron | 50.0% | |
| GTCCTGTGAATTTCACGCTC+CGG | - | chr5.4:16833217-16833236 | MS.gene83683:intron | 50.0% | |
| TGGCAAAAGGGTCTCTGTGT+TGG | - | chr5.4:16832250-16832269 | MS.gene83683:CDS | 50.0% | |
| ! | CCGCTTGTTGCTTCCAATTC+GGG | - | chr5.4:16832359-16832378 | MS.gene83683:intron | 50.0% |
| ! | GCCGCTTGTTGCTTCCAATT+CGG | - | chr5.4:16832358-16832377 | MS.gene83683:intron | 50.0% |
| !! | GGAACGGTGATGCTAGTCTT+TGG | - | chr5.4:16833937-16833956 | MS.gene83683:intron | 50.0% |
| GAAGCAACAAGCGGCGATGA+CGG | + | chr5.4:16832353-16832372 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 16832161 | 16834393 | 16832161 | ID=MS.gene83683 |
| chr5.4 | mRNA | 16832161 | 16834393 | 16832161 | ID=MS.gene83683.t1;Parent=MS.gene83683 |
| chr5.4 | exon | 16834103 | 16834393 | 16834103 | ID=MS.gene83683.t1.exon1;Parent=MS.gene83683.t1 |
| chr5.4 | CDS | 16834103 | 16834393 | 16834103 | ID=cds.MS.gene83683.t1;Parent=MS.gene83683.t1 |
| chr5.4 | exon | 16833578 | 16833655 | 16833578 | ID=MS.gene83683.t1.exon2;Parent=MS.gene83683.t1 |
| chr5.4 | CDS | 16833578 | 16833655 | 16833578 | ID=cds.MS.gene83683.t1;Parent=MS.gene83683.t1 |
| chr5.4 | exon | 16832927 | 16833008 | 16832927 | ID=MS.gene83683.t1.exon3;Parent=MS.gene83683.t1 |
| chr5.4 | CDS | 16832927 | 16833008 | 16832927 | ID=cds.MS.gene83683.t1;Parent=MS.gene83683.t1 |
| chr5.4 | exon | 16832489 | 16832631 | 16832489 | ID=MS.gene83683.t1.exon4;Parent=MS.gene83683.t1 |
| chr5.4 | CDS | 16832489 | 16832631 | 16832489 | ID=cds.MS.gene83683.t1;Parent=MS.gene83683.t1 |
| chr5.4 | exon | 16832161 | 16832370 | 16832161 | ID=MS.gene83683.t1.exon5;Parent=MS.gene83683.t1 |
| chr5.4 | CDS | 16832161 | 16832370 | 16832161 | ID=cds.MS.gene83683.t1;Parent=MS.gene83683.t1 |
| Gene Sequence |
| Protein sequence |
