Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84307.t1 | XP_003596846.1 | 96.4 | 220 | 8 | 0 | 1 | 220 | 1 | 220 | 6.40E-97 | 363.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84307.t1 | G7IHF9 | 96.4 | 220 | 8 | 0 | 1 | 220 | 1 | 220 | 1.5e-99 | 363.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84307.t1 | A0A396JB04 | 96.4 | 220 | 8 | 0 | 1 | 220 | 1 | 220 | 4.6e-97 | 363.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050133 | MS.gene84307 | 0.808745 | 2.66E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene84307 | 0.803581 | 3.26E-49 | -1.69E-46 |
| MS.gene054742 | MS.gene84307 | 0.832127 | 1.13E-55 | -1.69E-46 |
| MS.gene056330 | MS.gene84307 | 0.832906 | 7.23E-56 | -1.69E-46 |
| MS.gene056514 | MS.gene84307 | -0.800273 | 1.56E-48 | -1.69E-46 |
| MS.gene056920 | MS.gene84307 | 0.825065 | 5.74E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene84307 | 0.814278 | 1.67E-51 | -1.69E-46 |
| MS.gene056924 | MS.gene84307 | 0.804648 | 1.95E-49 | -1.69E-46 |
| MS.gene059328 | MS.gene84307 | 0.818221 | 2.20E-52 | -1.69E-46 |
| MS.gene060087 | MS.gene84307 | 0.830263 | 3.24E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84307.t1 | MTR_2g086740 | 97.727 | 220 | 5 | 0 | 1 | 220 | 1 | 220 | 9.77e-158 | 435 |
| MS.gene84307.t1 | MTR_2g086740 | 98.667 | 150 | 2 | 0 | 1 | 150 | 1 | 150 | 1.75e-107 | 306 |
| MS.gene84307.t1 | MTR_1g058540 | 59.064 | 171 | 70 | 0 | 49 | 219 | 25 | 195 | 6.21e-60 | 187 |
| MS.gene84307.t1 | MTR_1g058560 | 60.116 | 173 | 69 | 0 | 47 | 219 | 22 | 194 | 2.22e-57 | 180 |
| MS.gene84307.t1 | MTR_1g058570 | 56.725 | 171 | 74 | 0 | 49 | 219 | 23 | 193 | 1.03e-54 | 173 |
| MS.gene84307.t1 | MTR_7g011090 | 48.276 | 174 | 90 | 0 | 46 | 219 | 12 | 185 | 2.66e-49 | 159 |
| MS.gene84307.t1 | MTR_4g081880 | 42.045 | 176 | 102 | 0 | 45 | 220 | 12 | 187 | 9.08e-45 | 148 |
| MS.gene84307.t1 | MTR_5g041900 | 42.564 | 195 | 102 | 1 | 26 | 220 | 2 | 186 | 2.35e-40 | 136 |
| MS.gene84307.t1 | MTR_7g083120 | 34.532 | 139 | 88 | 2 | 65 | 202 | 33 | 169 | 3.92e-18 | 79.3 |
| MS.gene84307.t1 | MTR_0004s0210 | 35.333 | 150 | 82 | 4 | 55 | 201 | 1 | 138 | 3.39e-17 | 76.3 |
| MS.gene84307.t1 | MTR_3g064310 | 30.769 | 195 | 103 | 6 | 40 | 216 | 7 | 187 | 1.20e-15 | 73.2 |
| MS.gene84307.t1 | MTR_7g108130 | 27.807 | 187 | 117 | 5 | 24 | 206 | 3 | 175 | 2.65e-13 | 66.2 |
| MS.gene84307.t1 | MTR_5g076480 | 29.299 | 157 | 103 | 2 | 61 | 217 | 36 | 184 | 6.85e-12 | 62.8 |
| MS.gene84307.t1 | MTR_0097s0070 | 28.455 | 123 | 72 | 2 | 99 | 213 | 71 | 185 | 2.62e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84307.t1 | AT2G27370 | 48.636 | 220 | 104 | 4 | 3 | 220 | 8 | 220 | 1.68e-62 | 194 |
| MS.gene84307.t1 | AT2G36100 | 54.762 | 168 | 76 | 0 | 52 | 219 | 38 | 205 | 4.06e-58 | 182 |
| MS.gene84307.t1 | AT5G06200 | 55.497 | 191 | 78 | 1 | 36 | 219 | 11 | 201 | 6.12e-54 | 172 |
| MS.gene84307.t1 | AT5G15290 | 50.000 | 152 | 75 | 1 | 50 | 200 | 15 | 166 | 2.44e-49 | 159 |
| MS.gene84307.t1 | AT3G11550 | 59.880 | 167 | 67 | 0 | 53 | 219 | 37 | 203 | 5.94e-49 | 159 |
| MS.gene84307.t1 | AT1G14160 | 42.424 | 165 | 95 | 0 | 55 | 219 | 44 | 208 | 6.49e-41 | 139 |
| MS.gene84307.t1 | AT1G17200 | 29.814 | 161 | 104 | 3 | 58 | 217 | 29 | 181 | 4.78e-16 | 73.9 |
| MS.gene84307.t1 | AT3G06390 | 30.597 | 134 | 88 | 2 | 62 | 190 | 37 | 170 | 2.63e-14 | 69.3 |
| MS.gene84307.t1 | AT1G03700 | 33.333 | 147 | 82 | 5 | 65 | 206 | 12 | 147 | 2.11e-12 | 63.2 |
| MS.gene84307.t1 | AT5G44550 | 30.247 | 162 | 101 | 4 | 66 | 219 | 22 | 179 | 1.96e-11 | 61.2 |
Find 50 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGTCCTCTTGGATTCT+AGG | 0.131201 | 2.2:+11994602 | None:intergenic |
| TCTTGGTGCTTGTGTCATTA+TGG | 0.186594 | 2.2:-11994425 | MS.gene84307:CDS |
| TCCATTGCTTCTTGTCCTCT+TGG | 0.274653 | 2.2:+11994594 | None:intergenic |
| CTTGGTGCTTGTGTCATTAT+GGG | 0.300806 | 2.2:-11994424 | MS.gene84307:CDS |
| ATGGGAGTCAAGATGCAAAT+TGG | 0.351329 | 2.2:-11993374 | MS.gene84307:CDS |
| CCTTCAGTTTCATGCTCAAT+GGG | 0.376932 | 2.2:-11994365 | MS.gene84307:CDS |
| TCCTTCAGTTTCATGCTCAA+TGG | 0.387247 | 2.2:-11994366 | MS.gene84307:CDS |
| AAAGCTACTCCACTCCAAAA+AGG | 0.388619 | 2.2:-11994511 | MS.gene84307:CDS |
| GGTGCCATTGGTGCTACTCT+TGG | 0.400369 | 2.2:-11994442 | MS.gene84307:CDS |
| TGTCCTCTTGGATTCTAGGA+TGG | 0.421911 | 2.2:+11994606 | None:intergenic |
| GCAGGTATTAACGGCCTTAG+TGG | 0.427478 | 2.2:-11993442 | MS.gene84307:intron |
| AACCCAATTGCAGGTATTAA+CGG | 0.427638 | 2.2:-11993451 | MS.gene84307:intron |
| ACACCACAACCAAACAAGAT+AGG | 0.440488 | 2.2:+11993271 | None:intergenic |
| AGGACAAGAAGCAATGGAAA+AGG | 0.444403 | 2.2:-11994589 | MS.gene84307:CDS |
| CTAAACATGCAGGTTCTTTG+TGG | 0.448810 | 2.2:-11993687 | MS.gene84307:intron |
| GTCCTCTTGGATTCTAGGAT+GGG | 0.449931 | 2.2:+11994607 | None:intergenic |
| GCATGAACTTACTTAAACAT+TGG | 0.453122 | 2.2:+11994334 | None:intergenic |
| GACCCCTTGCAGCCGGTCCA+CGG | 0.472395 | 2.2:-11993598 | MS.gene84307:CDS |
| GGACAAGAAGCAATGGAAAA+GGG | 0.477403 | 2.2:-11994588 | MS.gene84307:CDS |
| GGAAAAGGGAAATCCATTGA+TGG | 0.488181 | 2.2:-11994574 | MS.gene84307:CDS |
| TTTCCTATCTTGTTTGGTTG+TGG | 0.489463 | 2.2:-11993274 | MS.gene84307:CDS |
| CCAAGGTTCAAGTTTGGCTG+TGG | 0.491266 | 2.2:-11993319 | MS.gene84307:CDS |
| AAACCGTGGACCGGCTGCAA+GGG | 0.493192 | 2.2:+11993595 | None:intergenic |
| TGAAGGAATTGAGTGAAGAA+AGG | 0.493692 | 2.2:+11994382 | None:intergenic |
| GTGGCAAATGGAGCAGCAGC+TGG | 0.512854 | 2.2:-11993665 | MS.gene84307:CDS |
| TTGTGTACTTAGCACACAAT+GGG | 0.520027 | 2.2:-11993392 | MS.gene84307:CDS |
| TGTCTTCTGTAGCTCTCAAA+AGG | 0.525875 | 2.2:-11993251 | MS.gene84307:CDS |
| AGGTTCTTTGTGGTGGCAAA+TGG | 0.527477 | 2.2:-11993677 | MS.gene84307:CDS |
| ATTGTTAGACCCCTTGCAGC+CGG | 0.528058 | 2.2:-11993605 | MS.gene84307:CDS |
| GAAACCGTGGACCGGCTGCA+AGG | 0.530665 | 2.2:+11993594 | None:intergenic |
| CCACAGCCAAACTTGAACCT+TGG | 0.532217 | 2.2:+11993319 | None:intergenic |
| AGGAGAATGATCTCCATCAA+TGG | 0.544643 | 2.2:+11994561 | None:intergenic |
| TGAAGCAGCTGCAACCACTA+AGG | 0.559059 | 2.2:+11993428 | None:intergenic |
| GACAAGTAGAAACCGTGGAC+CGG | 0.563309 | 2.2:+11993586 | None:intergenic |
| TCCAAGAGGACAAGAAGCAA+TGG | 0.565675 | 2.2:-11994595 | MS.gene84307:CDS |
| AACATGCAGGTTCTTTGTGG+TGG | 0.566783 | 2.2:-11993684 | MS.gene84307:intron |
| GGACTCAAGAAGAGAAGTTG+AGG | 0.570390 | 2.2:-11994644 | MS.gene84307:CDS |
| GGTTGTTTCTTTCGTTGCGT+CGG | 0.570523 | 2.2:-11993298 | MS.gene84307:CDS |
| GCAGACAATTGAGAATGGTA+AGG | 0.574191 | 2.2:+11993628 | None:intergenic |
| TTGGTGCTTGTGTCATTATG+GGG | 0.576319 | 2.2:-11994423 | MS.gene84307:CDS |
| AACCGTGGACCGGCTGCAAG+GGG | 0.576915 | 2.2:+11993596 | None:intergenic |
| ACAATGCAGACAATTGAGAA+TGG | 0.577153 | 2.2:+11993623 | None:intergenic |
| CCCATTGAGCATGAAACTGA+AGG | 0.577749 | 2.2:+11994365 | None:intergenic |
| AGCACCAAGAGTAGCACCAA+TGG | 0.630653 | 2.2:+11994438 | None:intergenic |
| GTTGTGTACTTAGCACACAA+TGG | 0.633961 | 2.2:-11993393 | MS.gene84307:CDS |
| GTAACAACAGTTGCAGCATG+TGG | 0.641546 | 2.2:+11994538 | None:intergenic |
| CAATTGAGAATGGTAAGGAG+AGG | 0.647713 | 2.2:+11993633 | None:intergenic |
| ACAACAGTTGCAGCATGTGG+AGG | 0.659482 | 2.2:+11994541 | None:intergenic |
| CTCCCATCCTAGAATCCAAG+AGG | 0.662155 | 2.2:-11994609 | MS.gene84307:CDS |
| ACAATGACAAGTAGAAACCG+TGG | 0.706590 | 2.2:+11993581 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATGCAAAAAAGTTAAAAT+AGG | - | chr2.2:11994043-11994062 | MS.gene84307:intron | 15.0% |
| !! | AAGAAAAAAAATGTTGTTAA+AGG | - | chr2.2:11993892-11993911 | MS.gene84307:intron | 15.0% |
| !! | AATGCAAAAAAGTTAAAATA+GGG | - | chr2.2:11994044-11994063 | MS.gene84307:intron | 15.0% |
| !! | AGAAAAAAAATGTTGTTAAA+GGG | - | chr2.2:11993893-11993912 | MS.gene84307:intron | 15.0% |
| !! | GAGGAAAAAAAAAAATTATA+TGG | + | chr2.2:11994113-11994132 | None:intergenic | 15.0% |
| !! | TTTAATTATCATCCTATTTA+TGG | - | chr2.2:11994179-11994198 | MS.gene84307:intron | 15.0% |
| !! | ATCATGAAATTTGTAAAACT+AGG | - | chr2.2:11994015-11994034 | MS.gene84307:intron | 20.0% |
| !! | TCATGAAATTTGTAAAACTA+GGG | - | chr2.2:11994016-11994035 | MS.gene84307:intron | 20.0% |
| !! | TTGTATTGTAAAGATCAAAT+TGG | + | chr2.2:11993599-11993618 | None:intergenic | 20.0% |
| !!! | TTTATGACATGTCATATTTT+TGG | - | chr2.2:11993650-11993669 | MS.gene84307:CDS | 20.0% |
| ! | AATGACATAGCGTAAAAAAA+AGG | - | chr2.2:11993969-11993988 | MS.gene84307:intron | 25.0% |
| ! | TGAATTTAGAAATGAGAGAT+CGG | + | chr2.2:11993695-11993714 | None:intergenic | 25.0% |
| ! | TGACGTGTCATATTTATTAA+TGG | - | chr2.2:11993776-11993795 | MS.gene84307:intron | 25.0% |
| ! | TTACATTCGATGAATGAAAT+TGG | - | chr2.2:11993869-11993888 | MS.gene84307:intron | 25.0% |
| !! | TTTTTCTCACAACTTAATTG+AGG | - | chr2.2:11993742-11993761 | MS.gene84307:intron | 25.0% |
| !!! | AGAAAAAATTTCTGAAACGT+AGG | + | chr2.2:11993729-11993748 | None:intergenic | 25.0% |
| !!! | GAAAAAATTTCTGAAACGTA+GGG | + | chr2.2:11993728-11993747 | None:intergenic | 25.0% |
| !!! | TGTCATTTTAATTGATGACA+TGG | + | chr2.2:11993956-11993975 | None:intergenic | 25.0% |
| AAAGATCAAATTGGACATCA+CGG | + | chr2.2:11993590-11993609 | None:intergenic | 30.0% | |
| ATCGGAAATTATGTTCTAGT+TGG | + | chr2.2:11993677-11993696 | None:intergenic | 30.0% | |
| ATTTATGGATCTAAACATGC+AGG | - | chr2.2:11994194-11994213 | MS.gene84307:intron | 30.0% | |
| CAAAAAGGTGGAATGAAAAA+GGG | - | chr2.2:11993395-11993414 | MS.gene84307:CDS | 30.0% | |
| CGTAAAAAAAAGGCTCAAAT+AGG | - | chr2.2:11993979-11993998 | MS.gene84307:intron | 30.0% | |
| GCATGAACTTACTTAAACAT+TGG | + | chr2.2:11993560-11993579 | None:intergenic | 30.0% | |
| GCATGTTTAGATCCATAAAT+AGG | + | chr2.2:11994194-11994213 | None:intergenic | 30.0% | |
| TGACGATATGAGTGTTTATT+TGG | + | chr2.2:11993925-11993944 | None:intergenic | 30.0% | |
| ! | CAATCTTAGACTTCATTTTG+AGG | - | chr2.2:11993423-11993442 | MS.gene84307:CDS | 30.0% |
| AAAAGGCTCAAATAGGTTCT+CGG | - | chr2.2:11993986-11994005 | MS.gene84307:intron | 35.0% | |
| AACCCAATTGCAGGTATTAA+CGG | - | chr2.2:11994440-11994459 | MS.gene84307:CDS | 35.0% | |
| ACAATGCAGACAATTGAGAA+TGG | + | chr2.2:11994271-11994290 | None:intergenic | 35.0% | |
| CCAAAAAGGTGGAATGAAAA+AGG | - | chr2.2:11993394-11993413 | MS.gene84307:CDS | 35.0% | |
| CTATAACTAGTAAAGATCCC+AGG | + | chr2.2:11994158-11994177 | None:intergenic | 35.0% | |
| TGAAGGAATTGAGTGAAGAA+AGG | + | chr2.2:11993512-11993531 | None:intergenic | 35.0% | |
| TTGTGTACTTAGCACACAAT+GGG | - | chr2.2:11994499-11994518 | MS.gene84307:CDS | 35.0% | |
| ! | TTTCCTATCTTGTTTGGTTG+TGG | - | chr2.2:11994617-11994636 | MS.gene84307:CDS | 35.0% |
| !! | CCTTTTTCATTCCACCTTTT+TGG | + | chr2.2:11993397-11993416 | None:intergenic | 35.0% |
| !! | TTTTTGCCAAGGTTCAAGTT+TGG | - | chr2.2:11994566-11994585 | MS.gene84307:CDS | 35.0% |
| !!! | TTAGACTTCATTTTGAGGCT+TGG | - | chr2.2:11993428-11993447 | MS.gene84307:CDS | 35.0% |
| AAAGCTACTCCACTCCAAAA+AGG | - | chr2.2:11993380-11993399 | MS.gene84307:CDS | 40.0% | |
| AAGATCCCAGGTAAAATTGC+AGG | + | chr2.2:11994146-11994165 | None:intergenic | 40.0% | |
| AATGTTGACAACCCAATTGC+AGG | - | chr2.2:11994431-11994450 | MS.gene84307:CDS | 40.0% | |
| ACAATGACAAGTAGAAACCG+TGG | + | chr2.2:11994313-11994332 | None:intergenic | 40.0% | |
| ACACCACAACCAAACAAGAT+AGG | + | chr2.2:11994623-11994642 | None:intergenic | 40.0% | |
| AGATCCCAGGTAAAATTGCA+GGG | + | chr2.2:11994145-11994164 | None:intergenic | 40.0% | |
| AGGACAAGAAGCAATGGAAA+AGG | - | chr2.2:11993302-11993321 | MS.gene84307:CDS | 40.0% | |
| AGGAGAATGATCTCCATCAA+TGG | + | chr2.2:11993333-11993352 | None:intergenic | 40.0% | |
| ATGGGAGTCAAGATGCAAAT+TGG | - | chr2.2:11994517-11994536 | MS.gene84307:CDS | 40.0% | |
| CAATTGAGAATGGTAAGGAG+AGG | + | chr2.2:11994261-11994280 | None:intergenic | 40.0% | |
| CCTTCAGTTTCATGCTCAAT+GGG | - | chr2.2:11993526-11993545 | MS.gene84307:intron | 40.0% | |
| CTAAACATGCAGGTTCTTTG+TGG | - | chr2.2:11994204-11994223 | MS.gene84307:intron | 40.0% | |
| GCAGACAATTGAGAATGGTA+AGG | + | chr2.2:11994266-11994285 | None:intergenic | 40.0% | |
| GGAAAAGGGAAATCCATTGA+TGG | - | chr2.2:11993317-11993336 | MS.gene84307:CDS | 40.0% | |
| GGACAAGAAGCAATGGAAAA+GGG | - | chr2.2:11993303-11993322 | MS.gene84307:CDS | 40.0% | |
| GTTGTGTACTTAGCACACAA+TGG | - | chr2.2:11994498-11994517 | MS.gene84307:CDS | 40.0% | |
| TCCTTCAGTTTCATGCTCAA+TGG | - | chr2.2:11993525-11993544 | MS.gene84307:intron | 40.0% | |
| TGTCTTCTGTAGCTCTCAAA+AGG | - | chr2.2:11994640-11994659 | MS.gene84307:CDS | 40.0% | |
| TTCTTGTCCTCTTGGATTCT+AGG | + | chr2.2:11993292-11993311 | None:intergenic | 40.0% | |
| ! | CTATCCCTGCAATTTTACCT+GGG | - | chr2.2:11994138-11994157 | MS.gene84307:intron | 40.0% |
| ! | TTGGTGCTTGTGTCATTATG+GGG | - | chr2.2:11993468-11993487 | MS.gene84307:intron | 40.0% |
| !! | CTTGGTGCTTGTGTCATTAT+GGG | - | chr2.2:11993467-11993486 | MS.gene84307:intron | 40.0% |
| !! | GTCGGTTTTCCTATCTTGTT+TGG | - | chr2.2:11994611-11994630 | MS.gene84307:CDS | 40.0% |
| !! | TCTTGGTGCTTGTGTCATTA+TGG | - | chr2.2:11993466-11993485 | MS.gene84307:intron | 40.0% |
| !! | TTCATTCCACCTTTTTGGAG+TGG | + | chr2.2:11993392-11993411 | None:intergenic | 40.0% |
| !!! | CAGTTCACTGATTTTTGCCA+AGG | - | chr2.2:11994555-11994574 | MS.gene84307:CDS | 40.0% |
| AACATGCAGGTTCTTTGTGG+TGG | - | chr2.2:11994207-11994226 | MS.gene84307:intron | 45.0% | |
| AATTGCAGGGATAGGAAGAG+AGG | + | chr2.2:11994132-11994151 | None:intergenic | 45.0% | |
| AGGCCGTTAATACCTGCAAT+TGG | + | chr2.2:11994446-11994465 | None:intergenic | 45.0% | |
| AGGTTCTTTGTGGTGGCAAA+TGG | - | chr2.2:11994214-11994233 | MS.gene84307:intron | 45.0% | |
| CCAGGTAAAATTGCAGGGAT+AGG | + | chr2.2:11994140-11994159 | None:intergenic | 45.0% | |
| CCCATTGAGCATGAAACTGA+AGG | + | chr2.2:11993529-11993548 | None:intergenic | 45.0% | |
| GGACTCAAGAAGAGAAGTTG+AGG | - | chr2.2:11993247-11993266 | MS.gene84307:CDS | 45.0% | |
| GGCCGTTAATACCTGCAATT+GGG | + | chr2.2:11994445-11994464 | None:intergenic | 45.0% | |
| GTAACAACAGTTGCAGCATG+TGG | + | chr2.2:11993356-11993375 | None:intergenic | 45.0% | |
| TCCAAGAGGACAAGAAGCAA+TGG | - | chr2.2:11993296-11993315 | MS.gene84307:CDS | 45.0% | |
| TCCATTGCTTCTTGTCCTCT+TGG | + | chr2.2:11993300-11993319 | None:intergenic | 45.0% | |
| ! | CCTATCCCTGCAATTTTACC+TGG | - | chr2.2:11994137-11994156 | MS.gene84307:intron | 45.0% |
| ! | TGTCCTCTTGGATTCTAGGA+TGG | + | chr2.2:11993288-11993307 | None:intergenic | 45.0% |
| ! | TTGGAGTGGAGTAGCTTTTG+TGG | + | chr2.2:11993378-11993397 | None:intergenic | 45.0% |
| !! | GGTTGTTTCTTTCGTTGCGT+CGG | - | chr2.2:11994593-11994612 | MS.gene84307:CDS | 45.0% |
| !! | GTCCTCTTGGATTCTAGGAT+GGG | + | chr2.2:11993287-11993306 | None:intergenic | 45.0% |
| !!! | ATTTTGAGGCTTGGTGCCAT+TGG | - | chr2.2:11993437-11993456 | MS.gene84307:CDS | 45.0% |
| ACAACAGTTGCAGCATGTGG+AGG | + | chr2.2:11993353-11993372 | None:intergenic | 50.0% | |
| AGCACCAAGAGTAGCACCAA+TGG | + | chr2.2:11993456-11993475 | None:intergenic | 50.0% | |
| ATTGTTAGACCCCTTGCAGC+CGG | - | chr2.2:11994286-11994305 | MS.gene84307:intron | 50.0% | |
| CCACAGCCAAACTTGAACCT+TGG | + | chr2.2:11994575-11994594 | None:intergenic | 50.0% | |
| CTCCCATCCTAGAATCCAAG+AGG | - | chr2.2:11993282-11993301 | MS.gene84307:CDS | 50.0% | |
| GACAAGTAGAAACCGTGGAC+CGG | + | chr2.2:11994308-11994327 | None:intergenic | 50.0% | |
| GCAGGTATTAACGGCCTTAG+TGG | - | chr2.2:11994449-11994468 | MS.gene84307:CDS | 50.0% | |
| GCTACTCCACTCCAAAAAGG+TGG | - | chr2.2:11993383-11993402 | MS.gene84307:CDS | 50.0% | |
| TGAAGCAGCTGCAACCACTA+AGG | + | chr2.2:11994466-11994485 | None:intergenic | 50.0% | |
| ! | CCAAGGTTCAAGTTTGGCTG+TGG | - | chr2.2:11994572-11994591 | MS.gene84307:CDS | 50.0% |
| !! | GGTGCCATTGGTGCTACTCT+TGG | - | chr2.2:11993449-11993468 | MS.gene84307:intron | 55.0% |
| AAACCGTGGACCGGCTGCAA+GGG | + | chr2.2:11994299-11994318 | None:intergenic | 60.0% | |
| GTGGCAAATGGAGCAGCAGC+TGG | - | chr2.2:11994226-11994245 | MS.gene84307:intron | 60.0% | |
| AACCGTGGACCGGCTGCAAG+GGG | + | chr2.2:11994298-11994317 | None:intergenic | 65.0% | |
| GAAACCGTGGACCGGCTGCA+AGG | + | chr2.2:11994300-11994319 | None:intergenic | 65.0% | |
| GACCCCTTGCAGCCGGTCCA+CGG | - | chr2.2:11994293-11994312 | MS.gene84307:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 11993245 | 11994668 | 11993245 | ID=MS.gene84307 |
| chr2.2 | mRNA | 11993245 | 11994668 | 11993245 | ID=MS.gene84307.t1;Parent=MS.gene84307 |
| chr2.2 | exon | 11994346 | 11994668 | 11994346 | ID=MS.gene84307.t1.exon1;Parent=MS.gene84307.t1 |
| chr2.2 | CDS | 11994346 | 11994668 | 11994346 | ID=cds.MS.gene84307.t1;Parent=MS.gene84307.t1 |
| chr2.2 | exon | 11993574 | 11993697 | 11993574 | ID=MS.gene84307.t1.exon2;Parent=MS.gene84307.t1 |
| chr2.2 | CDS | 11993574 | 11993697 | 11993574 | ID=cds.MS.gene84307.t1;Parent=MS.gene84307.t1 |
| chr2.2 | exon | 11993245 | 11993460 | 11993245 | ID=MS.gene84307.t1.exon3;Parent=MS.gene84307.t1 |
| chr2.2 | CDS | 11993245 | 11993460 | 11993245 | ID=cds.MS.gene84307.t1;Parent=MS.gene84307.t1 |
| Gene Sequence |
| Protein sequence |