Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056922.t1 | XP_013467945.1 | 97.4 | 195 | 5 | 0 | 1 | 195 | 1 | 195 | 1.20E-91 | 345.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056922.t1 | P0DI39 | 84.0 | 194 | 30 | 1 | 1 | 194 | 1 | 193 | 1.9e-80 | 300.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056922.t1 | A0A072VJL1 | 97.4 | 195 | 5 | 0 | 1 | 195 | 1 | 195 | 8.8e-92 | 345.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene056922 | 0.813719 | 2.22E-51 | -1.69E-46 |
| MS.gene049549 | MS.gene056922 | 0.852307 | 5.03E-61 | -1.69E-46 |
| MS.gene05104 | MS.gene056922 | 0.818958 | 1.49E-52 | -1.69E-46 |
| MS.gene051131 | MS.gene056922 | 0.801573 | 8.45E-49 | -1.69E-46 |
| MS.gene051996 | MS.gene056922 | 0.803321 | 3.69E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene056922 | 0.826795 | 2.23E-54 | -1.69E-46 |
| MS.gene052223 | MS.gene056922 | 0.810974 | 8.83E-51 | -1.69E-46 |
| MS.gene05240 | MS.gene056922 | 0.823598 | 1.27E-53 | -1.69E-46 |
| MS.gene054138 | MS.gene056922 | 0.825743 | 3.97E-54 | -1.69E-46 |
| MS.gene054146 | MS.gene056922 | 0.804671 | 1.93E-49 | -1.69E-46 |
| MS.gene054277 | MS.gene056922 | 0.835758 | 1.39E-56 | -1.69E-46 |
| MS.gene054742 | MS.gene056922 | 0.86441 | 1.24E-64 | -1.69E-46 |
| MS.gene055240 | MS.gene056922 | 0.818302 | 2.10E-52 | -1.69E-46 |
| MS.gene056330 | MS.gene056922 | 0.841948 | 3.49E-58 | -1.69E-46 |
| MS.gene056748 | MS.gene056922 | 0.80466 | 1.94E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene056922 | 0.902362 | 1.05E-78 | -1.69E-46 |
| MS.gene056922 | MS.gene056923 | 0.864502 | 1.16E-64 | -1.69E-46 |
| MS.gene056922 | MS.gene056924 | 0.855897 | 4.64E-62 | -1.69E-46 |
| MS.gene056922 | MS.gene056925 | 0.815696 | 8.10E-52 | -1.69E-46 |
| MS.gene056922 | MS.gene057261 | 0.834267 | 3.31E-56 | -1.69E-46 |
| MS.gene056922 | MS.gene057547 | 0.806263 | 8.96E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene057550 | 0.801069 | 1.07E-48 | -1.69E-46 |
| MS.gene056922 | MS.gene059955 | 0.804165 | 2.46E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene060087 | 0.853203 | 2.79E-61 | -1.69E-46 |
| MS.gene056922 | MS.gene060205 | 0.806322 | 8.70E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene061092 | 0.80782 | 4.19E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene061094 | 0.807458 | 5.01E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene062180 | 0.815687 | 8.14E-52 | -1.69E-46 |
| MS.gene056922 | MS.gene063988 | 0.849518 | 3.07E-60 | -1.69E-46 |
| MS.gene056922 | MS.gene064807 | 0.831907 | 1.28E-55 | -1.69E-46 |
| MS.gene056922 | MS.gene064961 | 0.814548 | 1.46E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene065724 | 0.864241 | 1.40E-64 | -1.69E-46 |
| MS.gene056922 | MS.gene065728 | 0.947356 | 7.89E-106 | -1.69E-46 |
| MS.gene056922 | MS.gene065729 | 0.867203 | 1.63E-65 | -1.69E-46 |
| MS.gene056922 | MS.gene06593 | 0.867133 | 1.71E-65 | -1.69E-46 |
| MS.gene056922 | MS.gene066500 | 0.800332 | 1.51E-48 | -1.69E-46 |
| MS.gene056922 | MS.gene066602 | 0.820522 | 6.56E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene066937 | 0.856165 | 3.87E-62 | -1.69E-46 |
| MS.gene056922 | MS.gene06756 | 0.842009 | 3.36E-58 | -1.69E-46 |
| MS.gene056922 | MS.gene06805 | 0.866718 | 2.32E-65 | -1.69E-46 |
| MS.gene056922 | MS.gene069482 | 0.838441 | 2.87E-57 | -1.69E-46 |
| MS.gene056922 | MS.gene071108 | 0.824587 | 7.44E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene071840 | 0.837482 | 5.07E-57 | -1.69E-46 |
| MS.gene056922 | MS.gene07241 | 0.809604 | 1.74E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene073526 | 0.825699 | 4.06E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene073870 | 0.826607 | 2.47E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene074299 | 0.828082 | 1.10E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene07488 | 0.820444 | 6.84E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene08883 | 0.82932 | 5.50E-55 | -1.69E-46 |
| MS.gene056922 | MS.gene23507 | 0.829049 | 6.40E-55 | -1.69E-46 |
| MS.gene056922 | MS.gene23869 | 0.823677 | 1.22E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene24108 | 0.829082 | 6.28E-55 | -1.69E-46 |
| MS.gene056922 | MS.gene24659 | 0.80566 | 1.20E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene24862 | 0.826885 | 2.12E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene25138 | 0.808892 | 2.48E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene25652 | 0.822782 | 1.97E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene26289 | 0.826585 | 2.50E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene26294 | 0.832443 | 9.43E-56 | -1.69E-46 |
| MS.gene056922 | MS.gene26296 | 0.800152 | 1.65E-48 | -1.69E-46 |
| MS.gene056922 | MS.gene27643 | 0.80154 | 8.58E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene28548 | 0.84927 | 3.60E-60 | -1.69E-46 |
| MS.gene056922 | MS.gene28594 | 0.811905 | 5.54E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene30382 | 0.808853 | 2.53E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene30666 | 0.816592 | 5.11E-52 | -1.69E-46 |
| MS.gene056922 | MS.gene32342 | 0.819745 | 9.88E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene33490 | 0.801561 | 8.50E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene35433 | 0.850487 | 1.64E-60 | -1.69E-46 |
| MS.gene056922 | MS.gene35460 | 0.809951 | 1.47E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene35690 | 0.851413 | 9.02E-61 | -1.69E-46 |
| MS.gene056922 | MS.gene35781 | 0.814397 | 1.57E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene35871 | 0.811672 | 6.23E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene37747 | 0.828823 | 7.26E-55 | -1.69E-46 |
| MS.gene056922 | MS.gene37749 | 0.825859 | 3.73E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene38435 | 0.826002 | 3.45E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene40171 | 0.826544 | 2.56E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene40846 | 0.835747 | 1.40E-56 | -1.69E-46 |
| MS.gene056922 | MS.gene41490 | 0.8035 | 3.38E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene42005 | 0.852746 | 3.77E-61 | -1.69E-46 |
| MS.gene056922 | MS.gene42080 | 0.821171 | 4.65E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene42096 | 0.80156 | 8.50E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene43162 | 0.825229 | 5.25E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene43874 | 0.830691 | 2.55E-55 | -1.69E-46 |
| MS.gene056922 | MS.gene44142 | 0.814822 | 1.27E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene44712 | 0.808184 | 3.51E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene44958 | 0.814155 | 1.78E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene47719 | 0.80743 | 5.07E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene48023 | 0.811365 | 7.26E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene48169 | 0.843914 | 1.05E-58 | -1.69E-46 |
| MS.gene056922 | MS.gene48807 | 0.813283 | 2.77E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene48885 | 0.807557 | 4.77E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene49021 | 0.814881 | 1.23E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene50248 | 0.807299 | 5.41E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene51331 | 0.842681 | 2.23E-58 | -1.69E-46 |
| MS.gene056922 | MS.gene52797 | 0.814834 | 1.26E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene54029 | 0.816972 | 4.20E-52 | -1.69E-46 |
| MS.gene056922 | MS.gene54346 | 0.801112 | 1.05E-48 | -1.69E-46 |
| MS.gene056922 | MS.gene54574 | 0.821098 | 4.84E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene54611 | 0.828478 | 8.79E-55 | -1.69E-46 |
| MS.gene056922 | MS.gene56528 | 0.804363 | 2.24E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene57807 | 0.826987 | 2.01E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene58107 | 0.803295 | 3.73E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene58786 | 0.824035 | 1.00E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene59333 | 0.804896 | 1.73E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene59920 | 0.81971 | 1.01E-52 | -1.69E-46 |
| MS.gene056922 | MS.gene60577 | 0.806518 | 7.91E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene60581 | 0.807701 | 4.44E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene64276 | 0.817909 | 2.58E-52 | -1.69E-46 |
| MS.gene056922 | MS.gene64584 | 0.828624 | 8.11E-55 | -1.69E-46 |
| MS.gene056922 | MS.gene64784 | 0.801977 | 6.98E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene65144 | 0.823326 | 1.47E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene65821 | 0.802815 | 4.69E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene65823 | 0.815185 | 1.05E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene67371 | 0.876724 | 1.11E-68 | -1.69E-46 |
| MS.gene056922 | MS.gene67377 | 0.822275 | 2.58E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene69355 | 0.819218 | 1.30E-52 | -1.69E-46 |
| MS.gene056922 | MS.gene69966 | 0.815654 | 8.27E-52 | -1.69E-46 |
| MS.gene056922 | MS.gene71342 | 0.838807 | 2.31E-57 | -1.69E-46 |
| MS.gene056922 | MS.gene71346 | 0.846796 | 1.73E-59 | -1.69E-46 |
| MS.gene056922 | MS.gene71350 | 0.808663 | 2.77E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene74351 | 0.800963 | 1.13E-48 | -1.69E-46 |
| MS.gene056922 | MS.gene74774 | 0.801871 | 7.34E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene75471 | 0.801072 | 1.07E-48 | -1.69E-46 |
| MS.gene056922 | MS.gene75472 | 0.830505 | 2.83E-55 | -1.69E-46 |
| MS.gene056922 | MS.gene76737 | 0.817325 | 3.50E-52 | -1.69E-46 |
| MS.gene056922 | MS.gene77325 | 0.819081 | 1.40E-52 | -1.69E-46 |
| MS.gene056922 | MS.gene78182 | 0.808803 | 2.59E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene80293 | 0.856016 | 4.28E-62 | -1.69E-46 |
| MS.gene056922 | MS.gene80468 | 0.827805 | 1.28E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene80744 | 0.843278 | 1.55E-58 | -1.69E-46 |
| MS.gene056922 | MS.gene81350 | 0.800758 | 1.24E-48 | -1.69E-46 |
| MS.gene056922 | MS.gene81504 | 0.818342 | 2.06E-52 | -1.69E-46 |
| MS.gene056922 | MS.gene81505 | 0.822246 | 2.62E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene81506 | 0.824016 | 1.01E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene81770 | 0.887269 | 1.65E-72 | -1.69E-46 |
| MS.gene056922 | MS.gene81771 | 0.890103 | 1.33E-73 | -1.69E-46 |
| MS.gene056922 | MS.gene81774 | 0.877471 | 6.12E-69 | -1.69E-46 |
| MS.gene056922 | MS.gene82244 | 0.813181 | 2.91E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene82245 | 0.806898 | 6.58E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene82858 | 0.807779 | 4.28E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene83366 | 0.809835 | 1.56E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene84143 | 0.855928 | 4.54E-62 | -1.69E-46 |
| MS.gene056922 | MS.gene84222 | 0.804386 | 2.21E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene84307 | 0.814278 | 1.67E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene84373 | 0.803569 | 3.27E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene85750 | 0.857879 | 1.21E-62 | -1.69E-46 |
| MS.gene056922 | MS.gene87043 | 0.81351 | 2.47E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene87056 | 0.826759 | 2.27E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene87222 | 0.826459 | 2.68E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene87346 | 0.826614 | 2.46E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene87750 | 0.830014 | 3.73E-55 | -1.69E-46 |
| MS.gene056922 | MS.gene88971 | 0.830736 | 2.48E-55 | -1.69E-46 |
| MS.gene056922 | MS.gene90407 | 0.801709 | 7.92E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene90814 | 0.812819 | 3.50E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene91221 | 0.828013 | 1.14E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene91222 | 0.827858 | 1.24E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene91226 | 0.813617 | 2.34E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene91754 | 0.803425 | 3.51E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene92335 | 0.809651 | 1.70E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene93632 | 0.802979 | 4.34E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene94593 | 0.808018 | 3.81E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene95804 | 0.820216 | 7.71E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene96749 | 0.806743 | 7.09E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene96782 | 0.812968 | 3.25E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene97024 | 0.826962 | 2.03E-54 | -1.69E-46 |
| MS.gene056922 | MS.gene97182 | 0.843243 | 1.58E-58 | -1.69E-46 |
| MS.gene056922 | MS.gene97293 | 0.848258 | 6.87E-60 | -1.69E-46 |
| MS.gene056922 | MS.gene97335 | 0.804485 | 2.11E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene97561 | 0.81284 | 3.46E-51 | -1.69E-46 |
| MS.gene056922 | MS.gene97790 | 0.806776 | 6.98E-50 | -1.69E-46 |
| MS.gene056922 | MS.gene98466 | 0.805254 | 1.46E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene98470 | 0.803022 | 4.25E-49 | -1.69E-46 |
| MS.gene056922 | MS.gene98920 | 0.81061 | 1.06E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008354 | MS.gene056922 | PPI |
| MS.gene056922 | MS.gene05033 | PPI |
| MS.gene061583 | MS.gene056922 | PPI |
| MS.gene017305 | MS.gene056922 | PPI |
| MS.gene05032 | MS.gene056922 | PPI |
| MS.gene056922 | MS.gene81804 | PPI |
| MS.gene056922 | MS.gene049677 | PPI |
| MS.gene26200 | MS.gene056922 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056922.t1 | MTR_1g058560 | 98.462 | 195 | 3 | 0 | 1 | 195 | 1 | 195 | 6.17e-138 | 383 |
| MS.gene056922.t1 | MTR_1g058540 | 81.633 | 196 | 35 | 1 | 1 | 195 | 1 | 196 | 6.87e-100 | 287 |
| MS.gene056922.t1 | MTR_1g058570 | 88.205 | 195 | 22 | 1 | 1 | 195 | 1 | 194 | 1.32e-99 | 286 |
| MS.gene056922.t1 | MTR_2g086740 | 60.694 | 173 | 68 | 0 | 22 | 194 | 47 | 219 | 7.52e-59 | 184 |
| MS.gene056922.t1 | MTR_7g011090 | 52.941 | 170 | 80 | 0 | 26 | 195 | 17 | 186 | 4.19e-56 | 176 |
| MS.gene056922.t1 | MTR_4g081880 | 42.932 | 191 | 103 | 2 | 4 | 194 | 2 | 186 | 6.88e-51 | 162 |
| MS.gene056922.t1 | MTR_5g041900 | 48.503 | 167 | 86 | 0 | 29 | 195 | 20 | 186 | 5.07e-45 | 147 |
| MS.gene056922.t1 | MTR_2g086740 | 63.462 | 104 | 38 | 0 | 22 | 125 | 47 | 150 | 2.23e-34 | 119 |
| MS.gene056922.t1 | MTR_0004s0210 | 37.419 | 155 | 84 | 4 | 36 | 188 | 7 | 150 | 5.21e-21 | 85.5 |
| MS.gene056922.t1 | MTR_0097s0070 | 33.898 | 118 | 76 | 2 | 72 | 188 | 69 | 185 | 6.44e-14 | 67.4 |
| MS.gene056922.t1 | MTR_4g118800 | 30.833 | 120 | 82 | 1 | 74 | 192 | 62 | 181 | 1.86e-12 | 63.2 |
| MS.gene056922.t1 | MTR_8g089300 | 29.487 | 156 | 101 | 3 | 41 | 188 | 30 | 184 | 1.90e-12 | 63.5 |
| MS.gene056922.t1 | MTR_7g108130 | 27.742 | 155 | 109 | 2 | 36 | 188 | 28 | 181 | 2.47e-12 | 63.2 |
| MS.gene056922.t1 | MTR_3g064310 | 32.203 | 118 | 77 | 2 | 75 | 192 | 77 | 191 | 3.08e-12 | 63.2 |
| MS.gene056922.t1 | MTR_5g076480 | 34.483 | 116 | 72 | 3 | 75 | 189 | 69 | 181 | 4.25e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056922.t1 | AT2G36100 | 56.863 | 204 | 76 | 3 | 2 | 195 | 5 | 206 | 1.27e-70 | 213 |
| MS.gene056922.t1 | AT3G11550 | 62.189 | 201 | 68 | 3 | 2 | 195 | 5 | 204 | 3.20e-64 | 197 |
| MS.gene056922.t1 | AT5G06200 | 61.616 | 198 | 70 | 3 | 2 | 194 | 5 | 201 | 1.02e-63 | 196 |
| MS.gene056922.t1 | AT2G27370 | 51.724 | 203 | 83 | 2 | 7 | 194 | 17 | 219 | 1.99e-62 | 193 |
| MS.gene056922.t1 | AT5G15290 | 44.828 | 174 | 86 | 1 | 2 | 175 | 3 | 166 | 1.91e-49 | 159 |
| MS.gene056922.t1 | AT1G14160 | 41.212 | 165 | 97 | 0 | 31 | 195 | 45 | 209 | 3.99e-44 | 146 |
| MS.gene056922.t1 | AT1G03700 | 32.886 | 149 | 91 | 2 | 40 | 188 | 12 | 151 | 2.50e-19 | 81.3 |
| MS.gene056922.t1 | AT1G17200 | 27.660 | 188 | 124 | 4 | 9 | 192 | 2 | 181 | 2.00e-16 | 74.3 |
| MS.gene056922.t1 | AT4G03540 | 33.058 | 121 | 72 | 2 | 56 | 176 | 28 | 139 | 2.31e-15 | 70.9 |
| MS.gene056922.t1 | AT5G44550 | 33.951 | 162 | 95 | 4 | 41 | 194 | 22 | 179 | 2.68e-15 | 71.2 |
| MS.gene056922.t1 | AT3G06390 | 30.075 | 133 | 88 | 2 | 37 | 164 | 37 | 169 | 2.78e-13 | 65.9 |
| MS.gene056922.t1 | AT4G15630 | 26.601 | 203 | 118 | 6 | 2 | 192 | 6 | 189 | 7.74e-12 | 61.6 |
| MS.gene056922.t1 | AT4G15610 | 26.144 | 153 | 107 | 3 | 28 | 175 | 20 | 171 | 8.02e-12 | 61.6 |
Find 40 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCATCCTCCTGGCCTTGC+AGG | 0.176057 | 1.1:+45437320 | None:intergenic |
| TGATTCTTGGATATCAATTT+TGG | 0.215560 | 1.1:+45437382 | None:intergenic |
| CTAGCCATTTGCAACCAATT+TGG | 0.242258 | 1.1:-45436503 | MS.gene056922:CDS |
| GTGATGTCTGCTTTGGCTAT+TGG | 0.247792 | 1.1:-45436407 | MS.gene056922:CDS |
| TGGTATCTTTGCTTGATTCT+TGG | 0.263645 | 1.1:+45437369 | None:intergenic |
| GGCTATAGTGGCTGGCTATT+TGG | 0.277845 | 1.1:-45436966 | MS.gene056922:CDS |
| TGATGTCTGCTTTGGCTATT+GGG | 0.288501 | 1.1:-45436406 | MS.gene056922:CDS |
| CCTTAAAATGAAATCCATTA+TGG | 0.301071 | 1.1:+45437286 | None:intergenic |
| TACCAAAGGAAAAGCTGTTT+TGG | 0.315492 | 1.1:-45437351 | MS.gene056922:CDS |
| ATGATGGCTACTATAGAAAA+AGG | 0.341980 | 1.1:+45436932 | None:intergenic |
| AAGGCCAGGAGGATGGAAAA+AGG | 0.353235 | 1.1:-45437315 | MS.gene056922:CDS |
| TCTTATTGCAATGGCTATAG+TGG | 0.369985 | 1.1:-45436978 | MS.gene056922:CDS |
| TCTTGCCGCTGCCGCCTCGA+TGG | 0.384071 | 1.1:-45437243 | MS.gene056922:CDS |
| AGCTGCTTCCATAGTTTACT+TGG | 0.385601 | 1.1:-45436555 | MS.gene056922:CDS |
| CTTGCCGCTGCCGCCTCGAT+GGG | 0.402133 | 1.1:-45437242 | MS.gene056922:CDS |
| GTTGGTTGTGATGTCTGCTT+TGG | 0.406589 | 1.1:-45436414 | MS.gene056922:CDS |
| GTGCACAGAAATCTCCAAAT+TGG | 0.409853 | 1.1:+45436489 | None:intergenic |
| ATGGAAATCAAGACACAAAC+TGG | 0.414877 | 1.1:-45436526 | MS.gene056922:CDS |
| AGCGGCAAGAGCTGCTGCTA+TGG | 0.432197 | 1.1:+45437256 | None:intergenic |
| ATCTCCAAATTGGTTGCAAA+TGG | 0.445100 | 1.1:+45436499 | None:intergenic |
| GTTGCAGCACCTGCAAGGCC+AGG | 0.457764 | 1.1:-45437329 | MS.gene056922:CDS |
| CACCTGCAAGGCCAGGAGGA+TGG | 0.475215 | 1.1:-45437322 | MS.gene056922:CDS |
| ATTGTGTGCCAAGTAAACTA+TGG | 0.493367 | 1.1:+45436547 | None:intergenic |
| AATGTTACATACTGGAATGC+AGG | 0.494232 | 1.1:+45437152 | None:intergenic |
| AAGCCTTGGTCCAGTTGCAT+GGG | 0.497314 | 1.1:+45436904 | None:intergenic |
| TGTTCCCATCGAGGCGGCAG+CGG | 0.517932 | 1.1:+45437238 | None:intergenic |
| AAAGCCTTGGTCCAGTTGCA+TGG | 0.518863 | 1.1:+45436903 | None:intergenic |
| ATTGCAATGGCTATAGTGGC+TGG | 0.542648 | 1.1:-45436974 | MS.gene056922:CDS |
| ATTGCAGGTATTTCTTACAC+TGG | 0.547240 | 1.1:-45436597 | MS.gene056922:intron |
| ATTGAGATCTTACAGTGTCT+AGG | 0.588191 | 1.1:+45436870 | None:intergenic |
| TGTGGCATCATTTATTACTG+TGG | 0.599611 | 1.1:-45436450 | MS.gene056922:CDS |
| ACAGACAAGTGGTGCAGTTG+TGG | 0.601968 | 1.1:-45436468 | MS.gene056922:CDS |
| AGCCTTGGTCCAGTTGCATG+GGG | 0.616293 | 1.1:+45436905 | None:intergenic |
| ATAGTTTACTTGGCACACAA+TGG | 0.619739 | 1.1:-45436545 | MS.gene056922:CDS |
| GCAGCACCTGCAAGGCCAGG+AGG | 0.636977 | 1.1:-45437326 | MS.gene056922:CDS |
| GAATCAAGCAAAGATACCAA+AGG | 0.648211 | 1.1:-45437365 | MS.gene056922:CDS |
| ATCACTTGTTCCCATCGAGG+CGG | 0.653937 | 1.1:+45437232 | None:intergenic |
| TTGATCACTTGTTCCCATCG+AGG | 0.661241 | 1.1:+45437229 | None:intergenic |
| GATTTCTGTGCACAGACAAG+TGG | 0.683686 | 1.1:-45436479 | MS.gene056922:CDS |
| GCCTTGGTCCAGTTGCATGG+GGG | 0.707472 | 1.1:+45436906 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTCAAATATAAGTAAAAGTT+AGG | - | chr1.1:45436995-45437014 | MS.gene056922:intron | 20.0% |
| !!! | GATGTATTTAATTCAACTTT+TGG | + | chr1.1:45437045-45437064 | None:intergenic | 20.0% |
| !!! | TTAGTTATGATTTTTCTTTG+TGG | - | chr1.1:45437158-45437177 | MS.gene056922:intron | 20.0% |
| ! | CCTTAAAATGAAATCCATTA+TGG | + | chr1.1:45436503-45436522 | None:intergenic | 25.0% |
| ! | TTCTAAGTCACATATAAGAT+CGG | - | chr1.1:45436679-45436698 | MS.gene056922:intron | 25.0% |
| !! | TGATTCTTGGATATCAATTT+TGG | + | chr1.1:45436407-45436426 | None:intergenic | 25.0% |
| !!! | ATGGATTTCATTTTAAGGTT+AGG | - | chr1.1:45436505-45436524 | MS.gene056922:CDS | 25.0% |
| !!! | CCATAATGGATTTCATTTTA+AGG | - | chr1.1:45436500-45436519 | MS.gene056922:CDS | 25.0% |
| !!! | CTTTTACTTATATTTGAGAC+TGG | + | chr1.1:45436993-45437012 | None:intergenic | 25.0% |
| !!! | TCAACAAAAGTTGATGTATT+TGG | - | chr1.1:45437018-45437037 | MS.gene056922:intron | 25.0% |
| ACTTAATGCTTGAAAAATGC+AGG | - | chr1.1:45436780-45436799 | MS.gene056922:intron | 30.0% | |
| ATGATGGCTACTATAGAAAA+AGG | + | chr1.1:45436857-45436876 | None:intergenic | 30.0% | |
| TAGATGTTTACTACTCTCTT+CGG | + | chr1.1:45437104-45437123 | None:intergenic | 30.0% | |
| ! | TACTTATATTTGAGACTGGA+GGG | + | chr1.1:45436989-45437008 | None:intergenic | 30.0% |
| ! | TTACTTATATTTGAGACTGG+AGG | + | chr1.1:45436990-45437009 | None:intergenic | 30.0% |
| !!! | CAGGTTTTTTCTTATTGCAA+TGG | - | chr1.1:45436799-45436818 | MS.gene056922:intron | 30.0% |
| !!! | GAGTTTTGAATGTTACATAC+TGG | + | chr1.1:45436645-45436664 | None:intergenic | 30.0% |
| !!! | TGTGGTTGTTTTAATCTTGT+TGG | - | chr1.1:45437354-45437373 | MS.gene056922:CDS | 30.0% |
| AATGTTACATACTGGAATGC+AGG | + | chr1.1:45436637-45436656 | None:intergenic | 35.0% | |
| ATAGTTTACTTGGCACACAA+TGG | - | chr1.1:45437241-45437260 | MS.gene056922:CDS | 35.0% | |
| ATCTCCAAATTGGTTGCAAA+TGG | + | chr1.1:45437290-45437309 | None:intergenic | 35.0% | |
| ATGGAAATCAAGACACAAAC+TGG | - | chr1.1:45437260-45437279 | MS.gene056922:CDS | 35.0% | |
| ATTGAGATCTTACAGTGTCT+AGG | + | chr1.1:45436919-45436938 | None:intergenic | 35.0% | |
| ATTGCAGGTATTTCTTACAC+TGG | - | chr1.1:45437189-45437208 | MS.gene056922:CDS | 35.0% | |
| ATTGTGTGCCAAGTAAACTA+TGG | + | chr1.1:45437242-45437261 | None:intergenic | 35.0% | |
| GAATCAAGCAAAGATACCAA+AGG | - | chr1.1:45436421-45436440 | MS.gene056922:CDS | 35.0% | |
| TCTTATTGCAATGGCTATAG+TGG | - | chr1.1:45436808-45436827 | MS.gene056922:intron | 35.0% | |
| TGGTATCTTTGCTTGATTCT+TGG | + | chr1.1:45436420-45436439 | None:intergenic | 35.0% | |
| TGTGGCATCATTTATTACTG+TGG | - | chr1.1:45437336-45437355 | MS.gene056922:CDS | 35.0% | |
| TTTGTGGTGCTTATAATTGC+AGG | - | chr1.1:45437174-45437193 | MS.gene056922:CDS | 35.0% | |
| ! | AACCAAAACAGCTTTTCCTT+TGG | + | chr1.1:45436440-45436459 | None:intergenic | 35.0% |
| ! | ACTTATATTTGAGACTGGAG+GGG | + | chr1.1:45436988-45437007 | None:intergenic | 35.0% |
| ! | TACCAAAGGAAAAGCTGTTT+TGG | - | chr1.1:45436435-45436454 | MS.gene056922:CDS | 35.0% |
| AGCTGCTTCCATAGTTTACT+TGG | - | chr1.1:45437231-45437250 | MS.gene056922:CDS | 40.0% | |
| AGGATGATGAGAAAAAGCCT+TGG | + | chr1.1:45436899-45436918 | None:intergenic | 40.0% | |
| CTAGCCATTTGCAACCAATT+TGG | - | chr1.1:45437283-45437302 | MS.gene056922:CDS | 40.0% | |
| GTGCACAGAAATCTCCAAAT+TGG | + | chr1.1:45437300-45437319 | None:intergenic | 40.0% | |
| TGATGTCTGCTTTGGCTATT+GGG | - | chr1.1:45437380-45437399 | MS.gene056922:CDS | 40.0% | |
| ! | CTTATATTTGAGACTGGAGG+GGG | + | chr1.1:45436987-45437006 | None:intergenic | 40.0% |
| ! | GAAAAAGGGCATAGCCATAA+TGG | - | chr1.1:45436486-45436505 | MS.gene056922:CDS | 40.0% |
| ATTGCAATGGCTATAGTGGC+TGG | - | chr1.1:45436812-45436831 | MS.gene056922:intron | 45.0% | |
| GATTTCTGTGCACAGACAAG+TGG | - | chr1.1:45437307-45437326 | MS.gene056922:CDS | 45.0% | |
| GTGATGTCTGCTTTGGCTAT+TGG | - | chr1.1:45437379-45437398 | MS.gene056922:CDS | 45.0% | |
| GTTGGTTGTGATGTCTGCTT+TGG | - | chr1.1:45437372-45437391 | MS.gene056922:CDS | 45.0% | |
| TTGATCACTTGTTCCCATCG+AGG | + | chr1.1:45436560-45436579 | None:intergenic | 45.0% | |
| AAAGCCTTGGTCCAGTTGCA+TGG | + | chr1.1:45436886-45436905 | None:intergenic | 50.0% | |
| AAGCCTTGGTCCAGTTGCAT+GGG | + | chr1.1:45436885-45436904 | None:intergenic | 50.0% | |
| AAGGCCAGGAGGATGGAAAA+AGG | - | chr1.1:45436471-45436490 | MS.gene056922:CDS | 50.0% | |
| ACAGACAAGTGGTGCAGTTG+TGG | - | chr1.1:45437318-45437337 | MS.gene056922:CDS | 50.0% | |
| AGGCCAGGAGGATGGAAAAA+GGG | - | chr1.1:45436472-45436491 | MS.gene056922:CDS | 50.0% | |
| ATCACTTGTTCCCATCGAGG+CGG | + | chr1.1:45436557-45436576 | None:intergenic | 50.0% | |
| ! | ATGCCCTTTTTCCATCCTCC+TGG | + | chr1.1:45436478-45436497 | None:intergenic | 50.0% |
| ! | GGCTATAGTGGCTGGCTATT+TGG | - | chr1.1:45436820-45436839 | MS.gene056922:intron | 50.0% |
| !! | TTTTGGTTGCAGCACCTGCA+AGG | - | chr1.1:45436452-45436471 | MS.gene056922:CDS | 50.0% |
| AGCCTTGGTCCAGTTGCATG+GGG | + | chr1.1:45436884-45436903 | None:intergenic | 55.0% | |
| ATCATACGCCCCCATGCAAC+TGG | - | chr1.1:45436872-45436891 | MS.gene056922:intron | 55.0% | |
| ! | AGTTGCATGGGGGCGTATGA+TGG | + | chr1.1:45436873-45436892 | None:intergenic | 55.0% |
| AGCGGCAAGAGCTGCTGCTA+TGG | + | chr1.1:45436533-45436552 | None:intergenic | 60.0% | |
| GCCTTGGTCCAGTTGCATGG+GGG | + | chr1.1:45436883-45436902 | None:intergenic | 60.0% | |
| !! | TTCCATCCTCCTGGCCTTGC+AGG | + | chr1.1:45436469-45436488 | None:intergenic | 60.0% |
| CACCTGCAAGGCCAGGAGGA+TGG | - | chr1.1:45436464-45436483 | MS.gene056922:CDS | 65.0% | |
| GCCCCCATGCAACTGGACCA+AGG | - | chr1.1:45436879-45436898 | MS.gene056922:intron | 65.0% | |
| GTTGCAGCACCTGCAAGGCC+AGG | - | chr1.1:45436457-45436476 | MS.gene056922:CDS | 65.0% | |
| TGTTCCCATCGAGGCGGCAG+CGG | + | chr1.1:45436551-45436570 | None:intergenic | 65.0% | |
| CTTGCCGCTGCCGCCTCGAT+GGG | - | chr1.1:45436544-45436563 | MS.gene056922:CDS | 70.0% | |
| GCAGCACCTGCAAGGCCAGG+AGG | - | chr1.1:45436460-45436479 | MS.gene056922:CDS | 70.0% | |
| TCTTGCCGCTGCCGCCTCGA+TGG | - | chr1.1:45436543-45436562 | MS.gene056922:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 45436397 | 45437411 | 45436397 | ID=MS.gene056922 |
| chr1.1 | mRNA | 45436397 | 45437411 | 45436397 | ID=MS.gene056922.t1;Parent=MS.gene056922 |
| chr1.1 | exon | 45437164 | 45437411 | 45437164 | ID=MS.gene056922.t1.exon1;Parent=MS.gene056922.t1 |
| chr1.1 | CDS | 45437164 | 45437411 | 45437164 | ID=cds.MS.gene056922.t1;Parent=MS.gene056922.t1 |
| chr1.1 | exon | 45436883 | 45437006 | 45436883 | ID=MS.gene056922.t1.exon2;Parent=MS.gene056922.t1 |
| chr1.1 | CDS | 45436883 | 45437006 | 45436883 | ID=cds.MS.gene056922.t1;Parent=MS.gene056922.t1 |
| chr1.1 | exon | 45436397 | 45436612 | 45436397 | ID=MS.gene056922.t1.exon3;Parent=MS.gene056922.t1 |
| chr1.1 | CDS | 45436397 | 45436612 | 45436397 | ID=cds.MS.gene056922.t1;Parent=MS.gene056922.t1 |
| Gene Sequence |
| Protein sequence |
