Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84559.t1 | XP_013443248.1 | 81.3 | 406 | 53 | 9 | 1 | 399 | 1 | 390 | 6.50E-164 | 587 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84559.t1 | A0A072TK54 | 81.3 | 406 | 53 | 9 | 1 | 399 | 1 | 390 | 4.7e-164 | 587.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene84559 | -0.809181 | 2.15E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene84559 | -0.83225 | 1.05E-55 | -1.69E-46 |
| MS.gene055134 | MS.gene84559 | 0.81061 | 1.06E-50 | -1.69E-46 |
| MS.gene055748 | MS.gene84559 | -0.811349 | 7.32E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene84559 | -0.804384 | 2.22E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene84559 | -0.812737 | 3.65E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84559.t1 | MTR_0027s0090 | 86.207 | 406 | 33 | 9 | 1 | 399 | 1 | 390 | 0.0 | 633 |
| MS.gene84559.t1 | MTR_4g019840 | 29.508 | 366 | 172 | 16 | 51 | 399 | 9 | 305 | 8.64e-22 | 95.1 |
| MS.gene84559.t1 | MTR_5g081460 | 30.789 | 393 | 187 | 19 | 44 | 399 | 18 | 362 | 2.18e-15 | 77.4 |
| MS.gene84559.t1 | MTR_2g097800 | 39.370 | 127 | 53 | 5 | 278 | 399 | 214 | 321 | 1.79e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene84559.t1 | AT3G54000 | 30.549 | 419 | 193 | 22 | 5 | 399 | 8 | 352 | 3.46e-20 | 91.3 |
| MS.gene84559.t1 | AT3G54000 | 32.286 | 350 | 159 | 18 | 5 | 330 | 8 | 303 | 2.67e-19 | 88.2 |
| MS.gene84559.t1 | AT3G54000 | 30.395 | 329 | 152 | 17 | 5 | 310 | 8 | 282 | 4.78e-12 | 66.6 |
Find 82 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTATATAGTCTTCAAGCTTT+AGG | 0.234041 | 7.3:+40419700 | None:intergenic |
| CAATCAACCCTATGTGCTTT+TGG | 0.244653 | 7.3:-40420818 | MS.gene84559:CDS |
| GTCTTCAAGCTTTAGGTTAA+GGG | 0.268229 | 7.3:+40419707 | None:intergenic |
| TGATGAACCTTTGCGGCATT+TGG | 0.275294 | 7.3:+40420787 | None:intergenic |
| TCCACCTCTAATGTTGAAAA+TGG | 0.300073 | 7.3:-40419639 | MS.gene84559:intron |
| AGTCTTCAAGCTTTAGGTTA+AGG | 0.313871 | 7.3:+40419706 | None:intergenic |
| TGCTGCTGGCTGAGGCCTGC+TGG | 0.319876 | 7.3:+40419384 | None:intergenic |
| AACAACAACGTTGCTGGTTT+AGG | 0.336273 | 7.3:-40420322 | MS.gene84559:CDS |
| GCATTCTCACAAACACCATT+AGG | 0.337817 | 7.3:+40420752 | None:intergenic |
| ATTTGGATGACGGTGAGTTC+TGG | 0.349881 | 7.3:-40421237 | MS.gene84559:CDS |
| ATTTCATTGCTCACTGCTGC+TGG | 0.359817 | 7.3:+40419370 | None:intergenic |
| AGGGTTGTGGAGTTTGAATT+TGG | 0.367866 | 7.3:+40420254 | None:intergenic |
| TTGCTCACTGCTGCTGGCTG+AGG | 0.373008 | 7.3:+40419376 | None:intergenic |
| GTTATGATTCTCAGAGGCTT+TGG | 0.379710 | 7.3:+40420967 | None:intergenic |
| AAACACCATTAGGGCTTCCT+TGG | 0.391799 | 7.3:+40420762 | None:intergenic |
| TTGTTCATCATCGTCACTTT+CGG | 0.392470 | 7.3:+40421042 | None:intergenic |
| CTGTTGCACCTCCAAGGCAT+AGG | 0.394744 | 7.3:-40419450 | MS.gene84559:CDS |
| GTTGAATTTCTTGATTCAAC+AGG | 0.398365 | 7.3:+40420163 | None:intergenic |
| CATTCTCACAAACACCATTA+GGG | 0.402675 | 7.3:+40420753 | None:intergenic |
| GGGGTATGCAGAAGCAAAAT+GGG | 0.403925 | 7.3:-40420405 | MS.gene84559:CDS |
| AGCGAAAGCGAAGAAGGTTT+CGG | 0.413750 | 7.3:+40421160 | None:intergenic |
| AATGGTTATGGTAGCAGTAC+TGG | 0.435118 | 7.3:-40420208 | MS.gene84559:CDS |
| AGGGCATGCGCCACTCTAGC+TGG | 0.436782 | 7.3:+40419726 | None:intergenic |
| TCAAGCCAAGGAAGCCCTAA+TGG | 0.437674 | 7.3:-40420767 | MS.gene84559:CDS |
| CTTGGCTTGATGAACCTTTG+CGG | 0.440983 | 7.3:+40420780 | None:intergenic |
| GGGGAAGAAGAATTTCTTTG+AGG | 0.452557 | 7.3:+40420650 | None:intergenic |
| GCAGCGGCAACAATACCAGC+AGG | 0.457056 | 7.3:-40419399 | MS.gene84559:CDS |
| GAAAGGCTGAACACAATAAG+AGG | 0.462504 | 7.3:-40420427 | MS.gene84559:CDS |
| AAAGCTTGAAGACTATATAG+TGG | 0.470534 | 7.3:-40419697 | MS.gene84559:CDS |
| ACATTATTACCCCTATGCCT+TGG | 0.482077 | 7.3:+40419439 | None:intergenic |
| TTGAAAAGCGAAAGCGAAGA+AGG | 0.482963 | 7.3:+40421154 | None:intergenic |
| GGAGGAAGAAATGTTGTTGA+TGG | 0.488016 | 7.3:-40420355 | MS.gene84559:CDS |
| TTATTACCCCTATGCCTTGG+AGG | 0.489609 | 7.3:+40419442 | None:intergenic |
| TGTTGCACCTCCAAGGCATA+GGG | 0.498023 | 7.3:-40419449 | MS.gene84559:CDS |
| TGTTGAGCATGTTGTAGTGT+TGG | 0.499882 | 7.3:+40420280 | None:intergenic |
| GTCATTTCCAAAAGCACATA+GGG | 0.503258 | 7.3:+40420811 | None:intergenic |
| TTTCAGCAAAGACAAACAAA+TGG | 0.515645 | 7.3:-40420376 | MS.gene84559:CDS |
| TGTAGCTTGTGCAACTGCAT+TGG | 0.518913 | 7.3:-40419751 | MS.gene84559:intron |
| TCAGAGCAAGCGAATCCATA+AGG | 0.526705 | 7.3:+40421106 | None:intergenic |
| ACAGCTCTCATGTAGGGTTG+TGG | 0.529286 | 7.3:+40420241 | None:intergenic |
| GTCATCCAAATTCTCAGCCA+TGG | 0.531206 | 7.3:+40421249 | None:intergenic |
| TAGGTTTGTCACCATCTGCA+TGG | 0.536008 | 7.3:-40420303 | MS.gene84559:CDS |
| GAATCATAACAACAATAACT+TGG | 0.540471 | 7.3:-40420954 | MS.gene84559:intron |
| AAGCTTGAAGACTATATAGT+GGG | 0.550779 | 7.3:-40419696 | MS.gene84559:CDS |
| AGTCATTTCCAAAAGCACAT+AGG | 0.552956 | 7.3:+40420810 | None:intergenic |
| AGGAAAACAGCTCTCATGTA+GGG | 0.557045 | 7.3:+40420235 | None:intergenic |
| CAGAGGCTTTGGAATCAACA+TGG | 0.562511 | 7.3:+40420978 | None:intergenic |
| TAGCTGCTGTTGCACCTCCA+AGG | 0.563262 | 7.3:-40419456 | MS.gene84559:CDS |
| TGCTACCATAACCATTTCCA+AGG | 0.565265 | 7.3:+40420215 | None:intergenic |
| TGCATTGGTTCCAGCTAGAG+TGG | 0.566049 | 7.3:-40419736 | MS.gene84559:CDS |
| AAGGAAAACAGCTCTCATGT+AGG | 0.571063 | 7.3:+40420234 | None:intergenic |
| TTTCTTGATTCAACAGGACG+AGG | 0.572729 | 7.3:+40420169 | None:intergenic |
| AAATCAAGCTTCCACAGGAG+TGG | 0.577332 | 7.3:-40419351 | MS.gene84559:CDS |
| TGTGTCATCACCGTCGTCGT+CGG | 0.577857 | 7.3:+40421195 | None:intergenic |
| CGCAAAGGTTCATCAAGCCA+AGG | 0.586184 | 7.3:-40420779 | MS.gene84559:CDS |
| CAATGAAATCAAGCTTCCAC+AGG | 0.589243 | 7.3:-40419356 | MS.gene84559:CDS |
| TGATAATGAGAAAGTGATTG+TGG | 0.597158 | 7.3:+40420578 | None:intergenic |
| TATGGTAGCAGTACTGGCAC+TGG | 0.599660 | 7.3:-40420202 | MS.gene84559:CDS |
| AATGACTCCAAATGCCGCAA+AGG | 0.600691 | 7.3:-40420794 | MS.gene84559:CDS |
| CATCAGTACGTCCACTCCTG+TGG | 0.602987 | 7.3:+40419340 | None:intergenic |
| GATGCAAGTGTTGTTGCGGC+TGG | 0.606152 | 7.3:+40419670 | None:intergenic |
| CAGCAAAGACAAACAAATGG+AGG | 0.610080 | 7.3:-40420373 | MS.gene84559:CDS |
| AAAGGCTGAACACAATAAGA+GGG | 0.619800 | 7.3:-40420426 | MS.gene84559:CDS |
| TTTGGATGGTAAAGTAACAG+GGG | 0.623580 | 7.3:+40420631 | None:intergenic |
| ATTGTTGTTATGATTCTCAG+AGG | 0.625609 | 7.3:+40420961 | None:intergenic |
| TGTAGTGTTGGCCATGCAGA+TGG | 0.627826 | 7.3:+40420292 | None:intergenic |
| TTTGGAATCAACATGGAGAG+AGG | 0.627829 | 7.3:+40420985 | None:intergenic |
| GGCAACAACAAATTGCTGAA+AGG | 0.630304 | 7.3:-40420444 | MS.gene84559:CDS |
| GAAGCAGCAAGAGAATCGAT+TGG | 0.636063 | 7.3:+40421073 | None:intergenic |
| GGGTATGCAGAAGCAAAATG+GGG | 0.638389 | 7.3:-40420404 | MS.gene84559:CDS |
| CAGTTTCTCTCCGACGACGA+CGG | 0.644936 | 7.3:-40421205 | MS.gene84559:CDS |
| AAACGATGCAAGTGTTGTTG+CGG | 0.650274 | 7.3:+40419666 | None:intergenic |
| AAAGCACATAGGGTTGATTG+TGG | 0.656361 | 7.3:+40420821 | None:intergenic |
| ATGGCTGAGAATTTGGATGA+CGG | 0.669713 | 7.3:-40421247 | MS.gene84559:CDS |
| GTTGCACCTCCAAGGCATAG+GGG | 0.686212 | 7.3:-40419448 | MS.gene84559:CDS |
| AGCTTGAAGACTATATAGTG+GGG | 0.692039 | 7.3:-40419695 | MS.gene84559:CDS |
| AGGCTGAACACAATAAGAGG+GGG | 0.692248 | 7.3:-40420424 | MS.gene84559:CDS |
| GGTATGCAGAAGCAAAATGG+GGG | 0.700479 | 7.3:-40420403 | MS.gene84559:CDS |
| AAGGCTGAACACAATAAGAG+GGG | 0.701462 | 7.3:-40420425 | MS.gene84559:CDS |
| TCGTCGGAGAGAAACTGCGG+CGG | 0.707718 | 7.3:+40421211 | None:intergenic |
| AATTCACAAAAGAAGCGCAG+CGG | 0.720068 | 7.3:-40419415 | MS.gene84559:CDS |
| TCGTCGTCGGAGAGAAACTG+CGG | 0.728597 | 7.3:+40421208 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAACTGTATTTATTTATT+TGG | - | chr7.3:40421049-40421068 | MS.gene84559:CDS | 10.0% |
| !! | ATAAATAAATACAGTTTATA+AGG | + | chr7.3:40421048-40421067 | None:intergenic | 10.0% |
| !! | TAAACTGTATTTATTTATTT+GGG | - | chr7.3:40421050-40421069 | MS.gene84559:CDS | 10.0% |
| !! | TAAATAAATACAGTTTATAA+GGG | + | chr7.3:40421047-40421066 | None:intergenic | 10.0% |
| !!! | TGCATTTTTTTATTATTTTT+TGG | - | chr7.3:40419660-40419679 | MS.gene84559:CDS | 10.0% |
| !!! | TTATTTATTTTTTCCTTTTA+GGG | - | chr7.3:40419700-40419719 | MS.gene84559:CDS | 10.0% |
| !!! | TTTATTTATTTTTTCCTTTT+AGG | - | chr7.3:40419699-40419718 | MS.gene84559:CDS | 10.0% |
| !! | AAACTGTATTTATTTATTTG+GGG | - | chr7.3:40421051-40421070 | MS.gene84559:CDS | 15.0% |
| !! | AAATTATTAAATATCACAAC+CGG | + | chr7.3:40420750-40420769 | None:intergenic | 15.0% |
| !!! | TTTTAATTGTTTTGAATGTA+TGG | - | chr7.3:40420723-40420742 | MS.gene84559:CDS | 15.0% |
| !! | AAAATAAATAAAACCCCAAA+AGG | + | chr7.3:40419691-40419710 | None:intergenic | 20.0% |
| !! | AAAATTAACATCATCATCAT+GGG | + | chr7.3:40420480-40420499 | None:intergenic | 20.0% |
| !! | AACTGTATTTATTTATTTGG+GGG | - | chr7.3:40421052-40421071 | MS.gene84559:CDS | 20.0% |
| !!! | AATGTTTTAATGCATTTAAG+AGG | - | chr7.3:40420552-40420571 | MS.gene84559:intron | 20.0% |
| !!! | ATGTTTTAATGCATTTAAGA+GGG | - | chr7.3:40420553-40420572 | MS.gene84559:intron | 20.0% |
| !!! | ATTTTTTGGTTTTTCCTTTT+GGG | - | chr7.3:40419674-40419693 | MS.gene84559:CDS | 20.0% |
| !!! | TATTTTTTGGTTTTTCCTTT+TGG | - | chr7.3:40419673-40419692 | MS.gene84559:CDS | 20.0% |
| !!! | TTTAAAATGTTACAACACAA+TGG | - | chr7.3:40420602-40420621 | MS.gene84559:CDS | 20.0% |
| ! | ACTGTATTTATTTATTTGGG+GGG | - | chr7.3:40421053-40421072 | MS.gene84559:CDS | 25.0% |
| ! | AGAAATTCAACAAAAAAACC+AGG | - | chr7.3:40420438-40420457 | MS.gene84559:CDS | 25.0% |
| ! | CAAAATTAACATCATCATCA+TGG | + | chr7.3:40420481-40420500 | None:intergenic | 25.0% |
| ! | CCTAAATCATAAACGAAAAA+CGG | + | chr7.3:40420674-40420693 | None:intergenic | 25.0% |
| ! | CTAAATCATAAACGAAAAAC+GGG | + | chr7.3:40420673-40420692 | None:intergenic | 25.0% |
| ! | CTACAATCACACAAAAAAAT+TGG | + | chr7.3:40420823-40420842 | None:intergenic | 25.0% |
| ! | GAATCATAACAACAATAACT+TGG | - | chr7.3:40419635-40419654 | MS.gene84559:intron | 25.0% |
| !!! | TTTTTTGGTTTTTCCTTTTG+GGG | - | chr7.3:40419675-40419694 | MS.gene84559:CDS | 25.0% |
| AAAGCTTGAAGACTATATAG+TGG | - | chr7.3:40420892-40420911 | MS.gene84559:intron | 30.0% | |
| AAGCTTGAAGACTATATAGT+GGG | - | chr7.3:40420893-40420912 | MS.gene84559:intron | 30.0% | |
| CTATATAGTCTTCAAGCTTT+AGG | + | chr7.3:40420892-40420911 | None:intergenic | 30.0% | |
| GGAAAAAAAAAGTAATCACC+TGG | + | chr7.3:40420459-40420478 | None:intergenic | 30.0% | |
| GGGGGTTTATTTAATCAAAA+GGG | - | chr7.3:40421071-40421090 | MS.gene84559:CDS | 30.0% | |
| GGGGTTTATTTAATCAAAAG+GGG | - | chr7.3:40421072-40421091 | MS.gene84559:CDS | 30.0% | |
| GGGTTTATTTAATCAAAAGG+GGG | - | chr7.3:40421073-40421092 | MS.gene84559:CDS | 30.0% | |
| GGTTTATTTAATCAAAAGGG+GGG | - | chr7.3:40421074-40421093 | MS.gene84559:CDS | 30.0% | |
| GTTGAATTTCTTGATTCAAC+AGG | + | chr7.3:40420429-40420448 | None:intergenic | 30.0% | |
| TTTCAGCAAAGACAAACAAA+TGG | - | chr7.3:40420213-40420232 | MS.gene84559:CDS | 30.0% | |
| ! | AGTACCATTTTCAACATTAG+AGG | + | chr7.3:40420957-40420976 | None:intergenic | 30.0% |
| ! | ATTGTTGTTATGATTCTCAG+AGG | + | chr7.3:40419631-40419650 | None:intergenic | 30.0% |
| ! | TGATAATGAGAAAGTGATTG+TGG | + | chr7.3:40420014-40420033 | None:intergenic | 30.0% |
| ! | TTAATGTACGTTTTTGCTAC+TGG | - | chr7.3:40420700-40420719 | MS.gene84559:CDS | 30.0% |
| ! | TTTTAATGCATTTAAGAGGG+TGG | - | chr7.3:40420556-40420575 | MS.gene84559:intron | 30.0% |
| ! | TTTTGGATGGTAAAGTAACA+GGG | + | chr7.3:40419962-40419981 | None:intergenic | 30.0% |
| ! | TTTTTGGATGGTAAAGTAAC+AGG | + | chr7.3:40419963-40419982 | None:intergenic | 30.0% |
| !! | CCGTTTTTCGTTTATGATTT+AGG | - | chr7.3:40420671-40420690 | MS.gene84559:CDS | 30.0% |
| !!! | ATTGTTTTGAATGTATGGAC+CGG | - | chr7.3:40420728-40420747 | MS.gene84559:CDS | 30.0% |
| !!! | GTTTTTATTGTCGTTTTGCA+GGG | - | chr7.3:40419738-40419757 | MS.gene84559:CDS | 30.0% |
| !!! | TGTACGTTTTTTTGCGTTTT+TGG | - | chr7.3:40420525-40420544 | MS.gene84559:intron | 30.0% |
| AAAGGCTGAACACAATAAGA+GGG | - | chr7.3:40420163-40420182 | MS.gene84559:CDS | 35.0% | |
| AATCCATAAGGAAAAAGCAG+AGG | + | chr7.3:40419474-40419493 | None:intergenic | 35.0% | |
| AGCTTGAAGACTATATAGTG+GGG | - | chr7.3:40420894-40420913 | MS.gene84559:intron | 35.0% | |
| CAAAAAAGCTCAAATCAGCA+GGG | + | chr7.3:40419989-40420008 | None:intergenic | 35.0% | |
| CAAAACGCAAAAACCCTAAA+AGG | + | chr7.3:40419716-40419735 | None:intergenic | 35.0% | |
| CATTCTCACAAACACCATTA+GGG | + | chr7.3:40419839-40419858 | None:intergenic | 35.0% | |
| GGGGGGTTTATTTAATCAAA+AGG | - | chr7.3:40421070-40421089 | MS.gene84559:CDS | 35.0% | |
| TCCACCTCTAATGTTGAAAA+TGG | - | chr7.3:40420950-40420969 | MS.gene84559:intron | 35.0% | |
| TTTGGATGGTAAAGTAACAG+GGG | + | chr7.3:40419961-40419980 | None:intergenic | 35.0% | |
| ! | ACCATTTTCAACATTAGAGG+TGG | + | chr7.3:40420954-40420973 | None:intergenic | 35.0% |
| ! | AGTCATTTCCAAAAGCACAT+AGG | + | chr7.3:40419782-40419801 | None:intergenic | 35.0% |
| ! | GTCATTTCCAAAAGCACATA+GGG | + | chr7.3:40419781-40419800 | None:intergenic | 35.0% |
| ! | GTTTTCCTTGGAAATGGTTA+TGG | - | chr7.3:40420369-40420388 | MS.gene84559:CDS | 35.0% |
| ! | TTGTTCATCATCGTCACTTT+CGG | + | chr7.3:40419550-40419569 | None:intergenic | 35.0% |
| !! | AGTCTTCAAGCTTTAGGTTA+AGG | + | chr7.3:40420886-40420905 | None:intergenic | 35.0% |
| !! | GTCTTCAAGCTTTAGGTTAA+GGG | + | chr7.3:40420885-40420904 | None:intergenic | 35.0% |
| !!! | CGTTTTTATTGTCGTTTTGC+AGG | - | chr7.3:40419737-40419756 | MS.gene84559:CDS | 35.0% |
| !!! | GATTTTAGTTGCAGAGGATA+AGG | - | chr7.3:40420124-40420143 | MS.gene84559:intron | 35.0% |
| AACAACAACAACAACGTTGC+TGG | - | chr7.3:40420261-40420280 | MS.gene84559:CDS | 40.0% | |
| AAGGAAAACAGCTCTCATGT+AGG | + | chr7.3:40420358-40420377 | None:intergenic | 40.0% | |
| AAGGCTGAACACAATAAGAG+GGG | - | chr7.3:40420164-40420183 | MS.gene84559:CDS | 40.0% | |
| AATGGTTATGGTAGCAGTAC+TGG | - | chr7.3:40420381-40420400 | MS.gene84559:CDS | 40.0% | |
| ACATTATTACCCCTATGCCT+TGG | + | chr7.3:40421153-40421172 | None:intergenic | 40.0% | |
| AGGAAAACAGCTCTCATGTA+GGG | + | chr7.3:40420357-40420376 | None:intergenic | 40.0% | |
| AGGGTTGTGGAGTTTGAATT+TGG | + | chr7.3:40420338-40420357 | None:intergenic | 40.0% | |
| ATGGCTGAGAATTTGGATGA+CGG | - | chr7.3:40419342-40419361 | MS.gene84559:CDS | 40.0% | |
| CAATGAAATCAAGCTTCCAC+AGG | - | chr7.3:40421233-40421252 | MS.gene84559:CDS | 40.0% | |
| CAGCAAAGACAAACAAATGG+AGG | - | chr7.3:40420216-40420235 | MS.gene84559:CDS | 40.0% | |
| GAAAGGCTGAACACAATAAG+AGG | - | chr7.3:40420162-40420181 | MS.gene84559:CDS | 40.0% | |
| GCAAAAAAGCTCAAATCAGC+AGG | + | chr7.3:40419990-40420009 | None:intergenic | 40.0% | |
| GCATTCTCACAAACACCATT+AGG | + | chr7.3:40419840-40419859 | None:intergenic | 40.0% | |
| GGAGGAAGAAATGTTGTTGA+TGG | - | chr7.3:40420234-40420253 | MS.gene84559:CDS | 40.0% | |
| GGCAACAACAAATTGCTGAA+AGG | - | chr7.3:40420145-40420164 | MS.gene84559:intron | 40.0% | |
| GGGGAAGAAGAATTTCTTTG+AGG | + | chr7.3:40419942-40419961 | None:intergenic | 40.0% | |
| GTTATGATTCTCAGAGGCTT+TGG | + | chr7.3:40419625-40419644 | None:intergenic | 40.0% | |
| TGCTACCATAACCATTTCCA+AGG | + | chr7.3:40420377-40420396 | None:intergenic | 40.0% | |
| TGTTGAGCATGTTGTAGTGT+TGG | + | chr7.3:40420312-40420331 | None:intergenic | 40.0% | |
| TTGAAAAGCGAAAGCGAAGA+AGG | + | chr7.3:40419438-40419457 | None:intergenic | 40.0% | |
| TTTCTTGATTCAACAGGACG+AGG | + | chr7.3:40420423-40420442 | None:intergenic | 40.0% | |
| ! | AAACGATGCAAGTGTTGTTG+CGG | + | chr7.3:40420926-40420945 | None:intergenic | 40.0% |
| ! | AAAGCACATAGGGTTGATTG+TGG | + | chr7.3:40419771-40419790 | None:intergenic | 40.0% |
| ! | AATTCACAAAAGAAGCGCAG+CGG | - | chr7.3:40421174-40421193 | MS.gene84559:CDS | 40.0% |
| ! | CAATCAACCCTATGTGCTTT+TGG | - | chr7.3:40419771-40419790 | MS.gene84559:intron | 40.0% |
| ! | TTTGGAATCAACATGGAGAG+AGG | + | chr7.3:40419607-40419626 | None:intergenic | 40.0% |
| !! | AACAACAACGTTGCTGGTTT+AGG | - | chr7.3:40420267-40420286 | MS.gene84559:CDS | 40.0% |
| !! | AGAGCTGTTTTCCTTGGAAA+TGG | - | chr7.3:40420363-40420382 | MS.gene84559:CDS | 40.0% |
| !! | CAAATCAGCAGGGTTGTTTT+TGG | + | chr7.3:40419979-40419998 | None:intergenic | 40.0% |
| !! | TACATGAGAGCTGTTTTCCT+TGG | - | chr7.3:40420357-40420376 | MS.gene84559:CDS | 40.0% |
| !! | TCGCTTTCGCTTTTCAACAA+TGG | - | chr7.3:40419441-40419460 | MS.gene84559:CDS | 40.0% |
| !!! | GATCCTCTGCTTTTTCCTTA+TGG | - | chr7.3:40419468-40419487 | MS.gene84559:intron | 40.0% |
| !!! | GTTGGTGATTTTAGTTGCAG+AGG | - | chr7.3:40420118-40420137 | MS.gene84559:intron | 40.0% |
| !!! | TTTATTGTCGTTTTGCAGGG+AGG | - | chr7.3:40419741-40419760 | MS.gene84559:CDS | 40.0% |
| AAACACCATTAGGGCTTCCT+TGG | + | chr7.3:40419830-40419849 | None:intergenic | 45.0% | |
| AAATCAAGCTTCCACAGGAG+TGG | - | chr7.3:40421238-40421257 | MS.gene84559:CDS | 45.0% | |
| AATGACTCCAAATGCCGCAA+AGG | - | chr7.3:40419795-40419814 | MS.gene84559:intron | 45.0% | |
| AGCGAAAGCGAAGAAGGTTT+CGG | + | chr7.3:40419432-40419451 | None:intergenic | 45.0% | |
| AGGCTGAACACAATAAGAGG+GGG | - | chr7.3:40420165-40420184 | MS.gene84559:CDS | 45.0% | |
| ATTTCATTGCTCACTGCTGC+TGG | + | chr7.3:40421222-40421241 | None:intergenic | 45.0% | |
| GAAGCAGCAAGAGAATCGAT+TGG | + | chr7.3:40419519-40419538 | None:intergenic | 45.0% | |
| GGGGTATGCAGAAGCAAAAT+GGG | - | chr7.3:40420184-40420203 | MS.gene84559:CDS | 45.0% | |
| GGGTATGCAGAAGCAAAATG+GGG | - | chr7.3:40420185-40420204 | MS.gene84559:CDS | 45.0% | |
| GGTATGCAGAAGCAAAATGG+GGG | - | chr7.3:40420186-40420205 | MS.gene84559:CDS | 45.0% | |
| TAGGTTTGTCACCATCTGCA+TGG | - | chr7.3:40420286-40420305 | MS.gene84559:CDS | 45.0% | |
| TCAGAGCAAGCGAATCCATA+AGG | + | chr7.3:40419486-40419505 | None:intergenic | 45.0% | |
| TGATGAACCTTTGCGGCATT+TGG | + | chr7.3:40419805-40419824 | None:intergenic | 45.0% | |
| TTATTACCCCTATGCCTTGG+AGG | + | chr7.3:40421150-40421169 | None:intergenic | 45.0% | |
| ! | ATTTGGATGACGGTGAGTTC+TGG | - | chr7.3:40419352-40419371 | MS.gene84559:CDS | 45.0% |
| ! | CGAAGAAGGTTTCGGTTTTG+TGG | + | chr7.3:40419424-40419443 | None:intergenic | 45.0% |
| ! | CTTGGCTTGATGAACCTTTG+CGG | + | chr7.3:40419812-40419831 | None:intergenic | 45.0% |
| ! | TGTAGCTTGTGCAACTGCAT+TGG | - | chr7.3:40420838-40420857 | MS.gene84559:intron | 45.0% |
| !! | AGAAGGTTTCGGTTTTGTGG+TGG | + | chr7.3:40419421-40419440 | None:intergenic | 45.0% |
| !! | CAGAGGCTTTGGAATCAACA+TGG | + | chr7.3:40419614-40419633 | None:intergenic | 45.0% |
| !!! | TCAGCAGGGTTGTTTTTGGA+TGG | + | chr7.3:40419975-40419994 | None:intergenic | 45.0% |
| !!! | AAATTTCATATTTTTAATAA+TGG | - | chr7.3:40420068-40420087 | MS.gene84559:intron | 5.0% |
| !!! | AATTTCATATTTTTAATAAT+GGG | - | chr7.3:40420069-40420088 | MS.gene84559:intron | 5.0% |
| !!! | TTTTTATTAATTAATTTTGT+TGG | - | chr7.3:40420100-40420119 | MS.gene84559:intron | 5.0% |
| ACAGCTCTCATGTAGGGTTG+TGG | + | chr7.3:40420351-40420370 | None:intergenic | 50.0% | |
| CGCAAAGGTTCATCAAGCCA+AGG | - | chr7.3:40419810-40419829 | MS.gene84559:intron | 50.0% | |
| TCAAGCCAAGGAAGCCCTAA+TGG | - | chr7.3:40419822-40419841 | MS.gene84559:intron | 50.0% | |
| TGTTGCACCTCCAAGGCATA+GGG | - | chr7.3:40421140-40421159 | MS.gene84559:CDS | 50.0% | |
| ! | GGGGGTATGCAGAAGCAAAA+TGG | - | chr7.3:40420183-40420202 | MS.gene84559:CDS | 50.0% |
| !! | TATGGTAGCAGTACTGGCAC+TGG | - | chr7.3:40420387-40420406 | MS.gene84559:CDS | 50.0% |
| !! | TGCATTGGTTCCAGCTAGAG+TGG | - | chr7.3:40420853-40420872 | MS.gene84559:intron | 50.0% |
| !! | TGTAGTGTTGGCCATGCAGA+TGG | + | chr7.3:40420300-40420319 | None:intergenic | 50.0% |
| CAGTTTCTCTCCGACGACGA+CGG | - | chr7.3:40419384-40419403 | MS.gene84559:CDS | 55.0% | |
| CTGTTGCACCTCCAAGGCAT+AGG | - | chr7.3:40421139-40421158 | MS.gene84559:CDS | 55.0% | |
| GTTGCACCTCCAAGGCATAG+GGG | - | chr7.3:40421141-40421160 | MS.gene84559:CDS | 55.0% | |
| TAGCTGCTGTTGCACCTCCA+AGG | - | chr7.3:40421133-40421152 | MS.gene84559:CDS | 55.0% | |
| TCGTCGTCGGAGAGAAACTG+CGG | + | chr7.3:40419384-40419403 | None:intergenic | 55.0% | |
| TGTGTCATCACCGTCGTCGT+CGG | + | chr7.3:40419397-40419416 | None:intergenic | 55.0% | |
| ! | GATGCAAGTGTTGTTGCGGC+TGG | + | chr7.3:40420922-40420941 | None:intergenic | 55.0% |
| GCAGCGGCAACAATACCAGC+AGG | - | chr7.3:40421190-40421209 | MS.gene84559:CDS | 60.0% | |
| TCGTCGGAGAGAAACTGCGG+CGG | + | chr7.3:40419381-40419400 | None:intergenic | 60.0% | |
| ! | TTGCTCACTGCTGCTGGCTG+AGG | + | chr7.3:40421216-40421235 | None:intergenic | 60.0% |
| AGGGCATGCGCCACTCTAGC+TGG | + | chr7.3:40420866-40420885 | None:intergenic | 65.0% | |
| ! | TGCTGCTGGCTGAGGCCTGC+TGG | + | chr7.3:40421208-40421227 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 40419342 | 40421269 | 40419342 | ID=MS.gene84559 |
| chr7.3 | mRNA | 40419342 | 40421269 | 40419342 | ID=MS.gene84559.t1;Parent=MS.gene84559 |
| chr7.3 | exon | 40420955 | 40421269 | 40420955 | ID=MS.gene84559.t1.exon1;Parent=MS.gene84559.t1 |
| chr7.3 | CDS | 40420955 | 40421269 | 40420955 | ID=cds.MS.gene84559.t1;Parent=MS.gene84559.t1 |
| chr7.3 | exon | 40420562 | 40420852 | 40420562 | ID=MS.gene84559.t1.exon2;Parent=MS.gene84559.t1 |
| chr7.3 | CDS | 40420562 | 40420852 | 40420562 | ID=cds.MS.gene84559.t1;Parent=MS.gene84559.t1 |
| chr7.3 | exon | 40420152 | 40420479 | 40420152 | ID=MS.gene84559.t1.exon3;Parent=MS.gene84559.t1 |
| chr7.3 | CDS | 40420152 | 40420479 | 40420152 | ID=cds.MS.gene84559.t1;Parent=MS.gene84559.t1 |
| chr7.3 | exon | 40419640 | 40419768 | 40419640 | ID=MS.gene84559.t1.exon4;Parent=MS.gene84559.t1 |
| chr7.3 | CDS | 40419640 | 40419768 | 40419640 | ID=cds.MS.gene84559.t1;Parent=MS.gene84559.t1 |
| chr7.3 | exon | 40419342 | 40419478 | 40419342 | ID=MS.gene84559.t1.exon5;Parent=MS.gene84559.t1 |
| chr7.3 | CDS | 40419342 | 40419478 | 40419342 | ID=cds.MS.gene84559.t1;Parent=MS.gene84559.t1 |
| Gene Sequence |
| Protein sequence |
