AlfalfaGEDB | MS.gene85071

M. sativa cultivar XinJiangDaYe / MS.gene85071

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85071.t1	AAQ73157.1	80	65	13	0	1	65	258	322	2.80E-19	104

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85071.t1	A0A0P0XII1	52.5	59	28	0	10	68	301	359	3.2e-11	68.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85071.t1	G7K7M3	80.0	65	13	0	1	65	298	362	2.0e-19	104.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050026	MS.gene85071	0.813268	2.79E-51	-1.69E-46
MS.gene055818	MS.gene85071	0.805234	1.47E-49	-1.69E-46
MS.gene057598	MS.gene85071	0.810847	9.40E-51	-1.69E-46
MS.gene058037	MS.gene85071	0.804948	1.69E-49	-1.69E-46
MS.gene059458	MS.gene85071	0.808234	3.42E-50	-1.69E-46
MS.gene059459	MS.gene85071	0.802017	6.85E-49	-1.69E-46
MS.gene059460	MS.gene85071	0.820036	8.48E-53	-1.69E-46
MS.gene059584	MS.gene85071	0.815346	9.69E-52	-1.69E-46
MS.gene061091	MS.gene85071	0.802501	5.44E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85071.t1	MTR_5g086040	92.727	55	4	1	55	1	55	2.95e-28	103
MS.gene85071.t1	MTR_5g086040	92.727	55	4	1	55	108	162	3.91e-28	103
MS.gene85071.t1	MTR_5g086040	92.727	55	4	1	55	298	352	1.66e-27	103
MS.gene85071.t1	MTR_5g086040	92.727	55	4	1	55	260	314	1.69e-27	103
MS.gene85071.t1	MTR_5g086130	53.125	64	30	2	65	291	354	8.30e-18	75.5
MS.gene85071.t1	MTR_5g086130	53.125	64	30	2	65	289	352	8.38e-18	75.5
MS.gene85071.t1	MTR_5g086030	59.649	57	23	9	65	316	372	1.04e-17	75.5
MS.gene85071.t1	MTR_5g086310	60.345	58	23	8	65	239	296	1.41e-17	74.3
MS.gene85071.t1	MTR_3g080050	57.143	56	24	10	65	299	354	6.43e-17	73.2
MS.gene85071.t1	MTR_5g086090	54.237	59	27	7	65	280	338	4.18e-16	70.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85071.t1	AT3G21630	47.541	61	32	0	4	64	293	353	1.65e-13	63.5

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Find 15 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGTGAAGATGGTTT+TGG	0.271904	4.2:-67202329	MS.gene85071:CDS
AAAGTCTCACATTTATCCTT+AGG	0.495935	4.2:+67202132	None:intergenic
AATAGAAAGTAGGATGCCTA+AGG	0.569248	4.2:-67202148	MS.gene85071:intron
AGCCATGCTGAAATTATTTG+TGG	0.438697	4.2:+67202355	None:intergenic
CAACATCACAAGCATTATGG+TGG	0.619239	4.2:-67202417	MS.gene85071:CDS
CACCATAATGCTTGTGATGT+TGG	0.473095	4.2:+67202418	None:intergenic
CTATGCAGAGCTGAGAGGCC+AGG	0.530086	4.2:-67202297	MS.gene85071:intron
GCTAATAAAATTGGTGAAGA+TGG	0.392053	4.2:-67202335	MS.gene85071:CDS
GCTGAAATTATTTGTGGCAA+TGG	0.475076	4.2:+67202361	None:intergenic
GTCTTCTATGCAGAGCTGAG+AGG	0.646680	4.2:-67202302	MS.gene85071:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTCTCACATTTATCCTT+AGG	+	chr4.2:67202435-67202454	None:intergenic	30.0%
GCTAATAAAATTGGTGAAGA+TGG	-	chr4.2:67202229-67202248	MS.gene85071:intron	30.0%
TAAGGATAAATGTGAGACTT+TGG	-	chr4.2:67202434-67202453	MS.gene85071:CDS	30.0%
TTCAGCATGGCTAATAAAAT+TGG	-	chr4.2:67202220-67202239	MS.gene85071:intron	30.0%
AATAGAAAGTAGGATGCCTA+AGG	-	chr4.2:67202416-67202435	MS.gene85071:CDS	35.0%
AGCCATGCTGAAATTATTTG+TGG	+	chr4.2:67202212-67202231	None:intergenic	35.0%
GCTGAAATTATTTGTGGCAA+TGG	+	chr4.2:67202206-67202225	None:intergenic	35.0%
TACCAACATCACAAGCATTA+TGG	-	chr4.2:67202144-67202163	MS.gene85071:CDS	35.0%
TGCCACAAATAATTTCAGCA+TGG	-	chr4.2:67202207-67202226	MS.gene85071:intron	35.0%
CAACATCACAAGCATTATGG+TGG	-	chr4.2:67202147-67202166	MS.gene85071:intron	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	67202124	67202462	67202124	ID=MS.gene85071
chr4.2	mRNA	67202124	67202462	67202124	ID=MS.gene85071.t1;Parent=MS.gene85071
chr4.2	exon	67202298	67202462	67202298	ID=MS.gene85071.t1.exon1;Parent=MS.gene85071.t1
chr4.2	CDS	67202298	67202462	67202298	ID=cds.MS.gene85071.t1;Parent=MS.gene85071.t1
chr4.2	exon	67202124	67202165	67202124	ID=MS.gene85071.t1.exon2;Parent=MS.gene85071.t1
chr4.2	CDS	67202124	67202165	67202124	ID=cds.MS.gene85071.t1;Parent=MS.gene85071.t1

Gene Sequence	>MS.gene85071 ATGCACTCAGCTCAAATTGATACCAACATCACAAGCATTATGGTGGAAAAATCCGAAGAATTTTCATACAAAGAACTATCCATTGCCACAAATAATTTCAGCATGGCTAATAAAATTGGTGAAGATGGTTTTGGAGAAGTCTTCTATGCAGAGCTGAGAGGCCAGGTCTGTTATCATATGCATGTTCTCAGTTACATTTATATTCTTACATGCATGATCTTAAAAGTGAATAAGCATCTCTGAAATTATGCAATGTTTTTCAAATTTTTAAAGCATAACATGTGGTTTTGTGAATAGAAAGTAGGATGCCTAAGGATAAATGTGAGACTTTGGCATTGA
Protein sequence	>MS.gene85071.t1 MHSAQIDTNITSIMVEKSEEFSYKELSIATNNFSMANKIGEDGFGEVFYAELRGQKVGCLRINVRLWH