Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85186.t1 | XP_003597635.1 | 100 | 95 | 0 | 0 | 3 | 97 | 51 | 145 | 2.40E-40 | 174.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85186.t1 | O82204 | 75.3 | 93 | 23 | 0 | 3 | 95 | 51 | 143 | 5.7e-30 | 131.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85186.t1 | G7IUL4 | 100.0 | 95 | 0 | 0 | 3 | 97 | 51 | 145 | 1.8e-40 | 174.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050320 | MS.gene85186 | 0.812929 | 3.31E-51 | -1.69E-46 |
| MS.gene051063 | MS.gene85186 | 0.820284 | 7.44E-53 | -1.69E-46 |
| MS.gene051330 | MS.gene85186 | 0.810884 | 9.23E-51 | -1.69E-46 |
| MS.gene051748 | MS.gene85186 | 0.807197 | 5.69E-50 | -1.69E-46 |
| MS.gene053109 | MS.gene85186 | 0.842098 | 3.18E-58 | -1.69E-46 |
| MS.gene06001 | MS.gene85186 | 0.823775 | 1.15E-53 | -1.69E-46 |
| MS.gene061145 | MS.gene85186 | 0.840219 | 9.92E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85186.t1 | MTR_2g100410 | 100.000 | 95 | 0 | 0 | 3 | 97 | 51 | 145 | 6.02e-63 | 187 |
| MS.gene85186.t1 | MTR_8g015570 | 90.323 | 93 | 9 | 0 | 3 | 95 | 51 | 143 | 2.12e-55 | 168 |
| MS.gene85186.t1 | MTR_8g015570 | 90.909 | 55 | 5 | 0 | 3 | 57 | 51 | 105 | 3.05e-30 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85186.t1 | AT2G19730 | 75.269 | 93 | 23 | 0 | 3 | 95 | 51 | 143 | 4.09e-44 | 140 |
| MS.gene85186.t1 | AT2G19730 | 75.269 | 93 | 23 | 0 | 3 | 95 | 51 | 143 | 4.09e-44 | 140 |
| MS.gene85186.t1 | AT2G19730 | 75.269 | 93 | 23 | 0 | 3 | 95 | 51 | 143 | 4.09e-44 | 140 |
| MS.gene85186.t1 | AT4G29410 | 72.043 | 93 | 26 | 0 | 3 | 95 | 51 | 143 | 2.04e-43 | 138 |
| MS.gene85186.t1 | AT4G29410 | 72.043 | 93 | 26 | 0 | 3 | 95 | 51 | 143 | 2.04e-43 | 138 |
Find 18 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGTTGAGTGCTGTTAAT+AGG | 0.286054 | 2.4:-3991068 | MS.gene85186:CDS |
| GGCTAAGGCTGTGCAAAATC+AGG | 0.425465 | 2.4:-3993035 | MS.gene85186:intron |
| AGCCTCAGAGTTGCAAAGTC+TGG | 0.433352 | 2.4:-3991045 | MS.gene85186:CDS |
| CTGTTATGAAGAAAGAGTTC+AGG | 0.475739 | 2.4:-3993063 | MS.gene85186:CDS |
| CAAAGATCAGTCTGTGTTGT+TGG | 0.477149 | 2.4:-3993137 | MS.gene85186:CDS |
| ACTGTAACTATTCAGTCTGC+TGG | 0.486689 | 2.4:-3993160 | MS.gene85186:CDS |
| CTGGCGCTAAGAAGAGAAAC+AGG | 0.489005 | 2.4:-3991026 | MS.gene85186:CDS |
| GATTTGTGAAGCAAAGCAGC+AGG | 0.534387 | 2.4:+3993085 | None:intergenic |
| AAGAAGAGAAACAGGCATGC+AGG | 0.536717 | 2.4:-3991018 | MS.gene85186:CDS |
| AGAGTTCAGGAGGATGGCTA+AGG | 0.539424 | 2.4:-3993050 | MS.gene85186:CDS |
| TTAAGAAGGCGGCTCTTGCA+AGG | 0.554765 | 2.4:-3991086 | MS.gene85186:CDS |
| AGAGCCGCCTTCTTAAGATC+AGG | 0.566181 | 2.4:+3991093 | None:intergenic |
| TTACAGACCTGATCTTAAGA+AGG | 0.576068 | 2.4:-3991100 | MS.gene85186:CDS |
| CGCCAGACTTTGCAACTCTG+AGG | 0.579160 | 2.4:+3991043 | None:intergenic |
| GAAGAAAGAGTTCAGGAGGA+TGG | 0.603864 | 2.4:-3993056 | MS.gene85186:CDS |
| TTATGAAGAAAGAGTTCAGG+AGG | 0.639998 | 2.4:-3993060 | MS.gene85186:CDS |
| TGTTGGCAACTACCAAGCCA+AGG | 0.673940 | 2.4:-3993120 | MS.gene85186:CDS |
| CAGACCTGATCTTAAGAAGG+CGG | 0.677189 | 2.4:-3991097 | MS.gene85186:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCTAATTCAAAATAATT+TGG | + | chr2.4:3991481-3991500 | None:intergenic | 10.0% |
| !!! | ACAAATTATTTTAGAATAAT+TGG | - | chr2.4:3992985-3993004 | MS.gene85186:intron | 10.0% |
| !!! | ATTATTCTAAAATAATTTGT+TGG | + | chr2.4:3992985-3993004 | None:intergenic | 10.0% |
| !!! | TAGCAATTTTAATTTTTTTT+TGG | - | chr2.4:3991032-3991051 | MS.gene85186:CDS | 10.0% |
| !!! | TTATTCTAAAATAATTTGTT+GGG | + | chr2.4:3992984-3993003 | None:intergenic | 10.0% |
| !! | AAACTTGAATTAAAAAATCA+AGG | + | chr2.4:3992903-3992922 | None:intergenic | 15.0% |
| !! | TAGTTCAAAAATAAAACATT+TGG | - | chr2.4:3991573-3991592 | MS.gene85186:intron | 15.0% |
| !!! | AAAATAATTTTGTACCTATA+TGG | - | chr2.4:3992492-3992511 | MS.gene85186:intron | 15.0% |
| !!! | AAACTATTTTGAATTATAAG+AGG | + | chr2.4:3992361-3992380 | None:intergenic | 15.0% |
| !!! | TGTTTTTATTATGGTATAAT+AGG | - | chr2.4:3991073-3991092 | MS.gene85186:CDS | 15.0% |
| !! | AAATTATGAAGAGATCAAAA+GGG | + | chr2.4:3992648-3992667 | None:intergenic | 20.0% |
| !! | ACAAAATGACTTAGATAAAA+AGG | + | chr2.4:3992097-3992116 | None:intergenic | 20.0% |
| !! | ACAATAAACAAGAGATAAAA+AGG | + | chr2.4:3992399-3992418 | None:intergenic | 20.0% |
| !! | ATAAAAAGGTTAGATTCATT+AGG | + | chr2.4:3992385-3992404 | None:intergenic | 20.0% |
| !! | TAAATTATGAAGAGATCAAA+AGG | + | chr2.4:3992649-3992668 | None:intergenic | 20.0% |
| !! | TTAGAAATATTCACGATAAT+TGG | - | chr2.4:3991493-3991512 | MS.gene85186:intron | 20.0% |
| !! | TTATTATGGTATAATAGGTT+TGG | - | chr2.4:3991078-3991097 | MS.gene85186:CDS | 20.0% |
| !!! | AATTTATGTTATTTGTCTGA+GGG | - | chr2.4:3992663-3992682 | MS.gene85186:intron | 20.0% |
| !!! | AGTTGAAAATTGTTTTGAAT+TGG | - | chr2.4:3991449-3991468 | MS.gene85186:intron | 20.0% |
| !!! | CTTACTTCATGTTTTTATTA+TGG | - | chr2.4:3991064-3991083 | MS.gene85186:CDS | 20.0% |
| !!! | GTTTTATTTTTGAACTAATC+CGG | + | chr2.4:3991570-3991589 | None:intergenic | 20.0% |
| !!! | GTTTTTATGTTTCACAATAT+TGG | - | chr2.4:3991350-3991369 | MS.gene85186:intron | 20.0% |
| !!! | TAATTTATGTTATTTGTCTG+AGG | - | chr2.4:3992662-3992681 | MS.gene85186:intron | 20.0% |
| ! | AAAATTCGAACAAAGAAAGA+GGG | + | chr2.4:3991649-3991668 | None:intergenic | 25.0% |
| ! | AAACAAACAGATAGTTTGAA+TGG | + | chr2.4:3991871-3991890 | None:intergenic | 25.0% |
| ! | AACAAACAGATAGTTTGAAT+GGG | + | chr2.4:3991870-3991889 | None:intergenic | 25.0% |
| ! | ATTCATATAGTTGTCATTCT+AGG | - | chr2.4:3991385-3991404 | MS.gene85186:intron | 25.0% |
| ! | ATTTACACAGATAAATCACA+TGG | + | chr2.4:3992173-3992192 | None:intergenic | 25.0% |
| ! | TAAATGCAAAATAGCATATG+AGG | + | chr2.4:3992715-3992734 | None:intergenic | 25.0% |
| ! | TCAAATTAGCTCATAGATTA+AGG | + | chr2.4:3993112-3993131 | None:intergenic | 25.0% |
| ! | TGAAATATTATTGTTACGCT+TGG | - | chr2.4:3991726-3991745 | MS.gene85186:intron | 25.0% |
| !! | AATAGTTACAGTTTTCTTGT+TGG | + | chr2.4:3991104-3991123 | None:intergenic | 25.0% |
| !! | ATTTATGTTATTTGTCTGAG+GGG | - | chr2.4:3992664-3992683 | MS.gene85186:intron | 25.0% |
| !! | TGAAATTTACTTGTTACTCT+TGG | - | chr2.4:3992289-3992308 | MS.gene85186:intron | 25.0% |
| !!! | AAGTTTTTATTTAGAGAAGC+TGG | - | chr2.4:3992917-3992936 | MS.gene85186:intron | 25.0% |
| !!! | AGTAATTTGCTGCAAAATAA+AGG | + | chr2.4:3992948-3992967 | None:intergenic | 25.0% |
| !!! | AGTTTTAAGTTACAAAAGAG+AGG | + | chr2.4:3991831-3991850 | None:intergenic | 25.0% |
| !!! | GAAAATTGTTTTGAATTGGT+TGG | - | chr2.4:3991453-3991472 | MS.gene85186:intron | 25.0% |
| AAATTCGAACAAAGAAAGAG+GGG | + | chr2.4:3991648-3991667 | None:intergenic | 30.0% | |
| AGATAAATCACATGGCAATT+AGG | + | chr2.4:3992165-3992184 | None:intergenic | 30.0% | |
| ATAAAACATTTGGAAACGTG+TGG | - | chr2.4:3991583-3991602 | MS.gene85186:intron | 30.0% | |
| ATATAAGAAGAATCCCTATG+TGG | - | chr2.4:3992549-3992568 | MS.gene85186:intron | 30.0% | |
| ATATAAGATGAATGCCTATG+TGG | - | chr2.4:3992256-3992275 | MS.gene85186:intron | 30.0% | |
| ATTTACACAGATAAATCGCA+TGG | + | chr2.4:3992471-3992490 | None:intergenic | 30.0% | |
| GAAAATTCGAACAAAGAAAG+AGG | + | chr2.4:3991650-3991669 | None:intergenic | 30.0% | |
| GAATTAGTGGTTGGAAAATT+CGG | - | chr2.4:3991316-3991335 | MS.gene85186:intron | 30.0% | |
| GCATTCATCTTATATGTTAG+AGG | + | chr2.4:3992251-3992270 | None:intergenic | 30.0% | |
| TATAAGAAGAATCCCTATGT+GGG | - | chr2.4:3992550-3992569 | MS.gene85186:intron | 30.0% | |
| TATAAGATGAATGCCTATGT+GGG | - | chr2.4:3992257-3992276 | MS.gene85186:intron | 30.0% | |
| TTGAATTATAAGAGGTCACT+AGG | + | chr2.4:3992353-3992372 | None:intergenic | 30.0% | |
| TTGAATTATCAGATGTCGAA+AGG | + | chr2.4:3992051-3992070 | None:intergenic | 30.0% | |
| ! | ATCTAGTCAAATTTTCTGCT+AGG | - | chr2.4:3991419-3991438 | MS.gene85186:intron | 30.0% |
| ! | ATTTTGTACCTATATGGACT+AGG | - | chr2.4:3992498-3992517 | MS.gene85186:intron | 30.0% |
| ! | TGAAATTTACTTGTTACGCT+TGG | - | chr2.4:3991983-3992002 | MS.gene85186:intron | 30.0% |
| !! | CAGAAGTTGTTTTGTGAATA+TGG | - | chr2.4:3992025-3992044 | MS.gene85186:intron | 30.0% |
| !! | CATTTTAATGGAAATACTGC+CGG | - | chr2.4:3991548-3991567 | MS.gene85186:intron | 30.0% |
| !! | GTTGTTTCAGTGCATTTTAA+TGG | - | chr2.4:3991536-3991555 | MS.gene85186:intron | 30.0% |
| AAAGAGAGGCAAGCTATTAA+CGG | + | chr2.4:3991817-3991836 | None:intergenic | 35.0% | |
| AACCAGATCACCAGAAAAAA+GGG | + | chr2.4:3992140-3992159 | None:intergenic | 35.0% | |
| CACTGAATAAACCCAACAAA+TGG | + | chr2.4:3991708-3991727 | None:intergenic | 35.0% | |
| CTGTTATGAAGAAAGAGTTC+AGG | - | chr2.4:3991209-3991228 | MS.gene85186:intron | 35.0% | |
| GCATTCAATCATATTAGCAG+TGG | + | chr2.4:3992769-3992788 | None:intergenic | 35.0% | |
| GTAAGAAGGATCCATTTGTT+GGG | - | chr2.4:3991694-3991713 | MS.gene85186:intron | 35.0% | |
| TAAATCGCATGGTAGCAATT+AGG | + | chr2.4:3992460-3992479 | None:intergenic | 35.0% | |
| TAATAGTTATCTGCAACCTG+AGG | + | chr2.4:3993155-3993174 | None:intergenic | 35.0% | |
| TCATTGAAGAAACCCACATA+GGG | + | chr2.4:3991966-3991985 | None:intergenic | 35.0% | |
| TCCACACAAAGAACAAGAAT+CGG | + | chr2.4:3991298-3991317 | None:intergenic | 35.0% | |
| TGTAAGAAGGATCCATTTGT+TGG | - | chr2.4:3991693-3991712 | MS.gene85186:intron | 35.0% | |
| TGTTCTTTGTGTGGAATTAG+TGG | - | chr2.4:3991303-3991322 | MS.gene85186:intron | 35.0% | |
| TTACAGACCTGATCTTAAGA+AGG | - | chr2.4:3993172-3993191 | MS.gene85186:CDS | 35.0% | |
| TTATGAAGAAAGAGTTCAGG+AGG | - | chr2.4:3991212-3991231 | MS.gene85186:intron | 35.0% | |
| TTCAATCATATTAGCAGTGG+TGG | + | chr2.4:3992766-3992785 | None:intergenic | 35.0% | |
| TTCATTGAAGAAACCCACAT+AGG | + | chr2.4:3991967-3991986 | None:intergenic | 35.0% | |
| ! | AACCTGGTCTCTATTTTATC+TGG | - | chr2.4:3992422-3992441 | MS.gene85186:intron | 35.0% |
| !! | ATAATTTGTTGGGCAGCAAT+TGG | + | chr2.4:3992974-3992993 | None:intergenic | 35.0% |
| !! | TAATTTGTTGGGCAGCAATT+GGG | + | chr2.4:3992973-3992992 | None:intergenic | 35.0% |
| !! | TTTTGTTTATTGTGCGAACC+TGG | - | chr2.4:3992111-3992130 | MS.gene85186:intron | 35.0% |
| ACGTAAGAAGAATCCCTATG+TGG | - | chr2.4:3991950-3991969 | MS.gene85186:intron | 40.0% | |
| ACTGTAACTATTCAGTCTGC+TGG | - | chr2.4:3991112-3991131 | MS.gene85186:CDS | 40.0% | |
| ATTCAACTAGTGTTACCCAG+CGG | - | chr2.4:3991912-3991931 | MS.gene85186:intron | 40.0% | |
| CAAAGAAAGAGGGGTTCAAA+TGG | + | chr2.4:3991639-3991658 | None:intergenic | 40.0% | |
| CAAAGATCAGTCTGTGTTGT+TGG | - | chr2.4:3991135-3991154 | MS.gene85186:intron | 40.0% | |
| CAACCAGATCACCAGAAAAA+AGG | + | chr2.4:3992141-3992160 | None:intergenic | 40.0% | |
| CACCAGATAAAATAGAGACC+AGG | + | chr2.4:3992427-3992446 | None:intergenic | 40.0% | |
| CCACACAAAGAACAAGAATC+GGG | + | chr2.4:3991297-3991316 | None:intergenic | 40.0% | |
| CGTAAGAAGAATCCCTATGT+GGG | - | chr2.4:3991951-3991970 | MS.gene85186:intron | 40.0% | |
| CTGGGTAACACTAGTTGAAT+CGG | + | chr2.4:3991912-3991931 | None:intergenic | 40.0% | |
| CTTTGTGTGGAATTAGTGGT+TGG | - | chr2.4:3991307-3991326 | MS.gene85186:intron | 40.0% | |
| GGATCCTTCTTACATGTTAG+AGG | + | chr2.4:3991687-3991706 | None:intergenic | 40.0% | |
| GTTAACAGCTCATCATCGAT+GGG | + | chr2.4:3992794-3992813 | None:intergenic | 40.0% | |
| GTTGGAAAATTCGGCTAAGT+TGG | - | chr2.4:3991325-3991344 | MS.gene85186:intron | 40.0% | |
| TCATTGAAGAAACCCACCAA+GGG | + | chr2.4:3992830-3992849 | None:intergenic | 40.0% | |
| TGAGCCTCTAACATGTAAGA+AGG | - | chr2.4:3991680-3991699 | MS.gene85186:intron | 40.0% | |
| TGAGCTGTTAACACGTAAGA+AGG | - | chr2.4:3991938-3991957 | MS.gene85186:intron | 40.0% | |
| TGTTAACAGCTCATCATCGA+TGG | + | chr2.4:3992795-3992814 | None:intergenic | 40.0% | |
| TTCACTGAAGAAACCCACAT+AGG | + | chr2.4:3992273-3992292 | None:intergenic | 40.0% | |
| TTCATTGAAGAAACCCACCA+AGG | + | chr2.4:3992831-3992850 | None:intergenic | 40.0% | |
| ! | ATAGTTTGAATGGGAGCGTA+AGG | + | chr2.4:3991861-3991880 | None:intergenic | 40.0% |
| ! | CAAGGTTGAGTGCTGTTAAT+AGG | - | chr2.4:3993204-3993223 | MS.gene85186:intron | 40.0% |
| ! | TAGTTTGAATGGGAGCGTAA+GGG | + | chr2.4:3991860-3991879 | None:intergenic | 40.0% |
| ! | TCTTGTTTATTGTGCGAACC+TGG | - | chr2.4:3992406-3992425 | MS.gene85186:intron | 40.0% |
| !!! | ATCCCTTTTTTCTGGTGATC+TGG | - | chr2.4:3992135-3992154 | MS.gene85186:intron | 40.0% |
| AACACGTAAGAAGGTTCCCT+TGG | - | chr2.4:3992811-3992830 | MS.gene85186:intron | 45.0% | |
| AAGAAGAGAAACAGGCATGC+AGG | - | chr2.4:3993254-3993273 | MS.gene85186:intron | 45.0% | |
| ACACCAAATCTTACTGGCAG+AGG | + | chr2.4:3992211-3992230 | None:intergenic | 45.0% | |
| CAGACCTGATCTTAAGAAGG+CGG | - | chr2.4:3993175-3993194 | MS.gene85186:CDS | 45.0% | |
| CCCGATTCTTGTTCTTTGTG+TGG | - | chr2.4:3991294-3991313 | MS.gene85186:intron | 45.0% | |
| GAAGAAAGAGTTCAGGAGGA+TGG | - | chr2.4:3991216-3991235 | MS.gene85186:intron | 45.0% | |
| GATTTGTGAAGCAAAGCAGC+AGG | + | chr2.4:3991190-3991209 | None:intergenic | 45.0% | |
| GGGGAAAACCTAGTCCATAT+AGG | + | chr2.4:3992509-3992528 | None:intergenic | 45.0% | |
| GTTAACTGCTCATCACTGCT+GGG | + | chr2.4:3992529-3992548 | None:intergenic | 45.0% | |
| TGGGGAACACCAAATCTTAC+TGG | + | chr2.4:3992217-3992236 | None:intergenic | 45.0% | |
| TGTTAACTGCTCATCACTGC+TGG | + | chr2.4:3992530-3992549 | None:intergenic | 45.0% | |
| TTAACTGCTCATCACTGCTG+GGG | + | chr2.4:3992528-3992547 | None:intergenic | 45.0% | |
| !!! | AACCTGGCATCCCTTTTTTC+TGG | - | chr2.4:3992127-3992146 | MS.gene85186:intron | 45.0% |
| !!! | CTTGTTTTGCTTCCTTGGCT+TGG | + | chr2.4:3991167-3991186 | None:intergenic | 45.0% |
| ACGTAAGAAGGTTCCCTTGG+TGG | - | chr2.4:3992814-3992833 | MS.gene85186:intron | 50.0% | |
| AGAGCCGCCTTCTTAAGATC+AGG | + | chr2.4:3993182-3993201 | None:intergenic | 50.0% | |
| AGAGTTCAGGAGGATGGCTA+AGG | - | chr2.4:3991222-3991241 | MS.gene85186:intron | 50.0% | |
| AGCCTCAGAGTTGCAAAGTC+TGG | - | chr2.4:3993227-3993246 | MS.gene85186:intron | 50.0% | |
| AGGCAAGCTATTAACGGTGC+AGG | + | chr2.4:3991811-3991830 | None:intergenic | 50.0% | |
| CACCAGAAAAAAGGGATGCC+AGG | + | chr2.4:3992132-3992151 | None:intergenic | 50.0% | |
| CGTAAGAAGGTTCCCTTGGT+GGG | - | chr2.4:3992815-3992834 | MS.gene85186:intron | 50.0% | |
| CTGGCGCTAAGAAGAGAAAC+AGG | - | chr2.4:3993246-3993265 | MS.gene85186:intron | 50.0% | |
| GCACCTCTGCCAGTAAGATT+TGG | - | chr2.4:3992205-3992224 | MS.gene85186:intron | 50.0% | |
| GCTATTAACGGTGCAGGCAA+AGG | + | chr2.4:3991805-3991824 | None:intergenic | 50.0% | |
| GGCTAAGGCTGTGCAAAATC+AGG | - | chr2.4:3991237-3991256 | MS.gene85186:intron | 50.0% | |
| GTTAACAGCTCATCACCGCT+GGG | + | chr2.4:3991930-3991949 | None:intergenic | 50.0% | |
| GTTAGAGGCTCATCACAGCA+AGG | + | chr2.4:3991672-3991691 | None:intergenic | 50.0% | |
| GTTAGAGGCTCATCACTGCT+GGG | + | chr2.4:3992236-3992255 | None:intergenic | 50.0% | |
| TGCAGGCAAAGGAGATCAGA+AGG | + | chr2.4:3991794-3991813 | None:intergenic | 50.0% | |
| TGTTAACAGCTCATCACCGC+TGG | + | chr2.4:3991931-3991950 | None:intergenic | 50.0% | |
| TGTTAGAGGCTCATCACTGC+TGG | + | chr2.4:3992237-3992256 | None:intergenic | 50.0% | |
| TGTTGGCAACTACCAAGCCA+AGG | - | chr2.4:3991152-3991171 | MS.gene85186:intron | 50.0% | |
| TTAAGAAGGCGGCTCTTGCA+AGG | - | chr2.4:3993186-3993205 | MS.gene85186:intron | 50.0% | |
| TTAGAGGCTCATCACTGCTG+GGG | + | chr2.4:3992235-3992254 | None:intergenic | 50.0% | |
| !!! | GCAGGCTTGTTTTGCTTCCT+TGG | + | chr2.4:3991172-3991191 | None:intergenic | 50.0% |
| CGCCAGACTTTGCAACTCTG+AGG | + | chr2.4:3993232-3993251 | None:intergenic | 55.0% | |
| TTGCGTGTGTGATGTGCCTC+AGG | - | chr2.4:3993136-3993155 | MS.gene85186:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 3991011 | 3993283 | 3991011 | ID=MS.gene85186 |
| chr2.4 | mRNA | 3991011 | 3993283 | 3991011 | ID=MS.gene85186.t1;Parent=MS.gene85186 |
| chr2.4 | exon | 3993280 | 3993283 | 3993280 | ID=MS.gene85186.t1.exon1;Parent=MS.gene85186.t1 |
| chr2.4 | CDS | 3993280 | 3993283 | 3993280 | ID=cds.MS.gene85186.t1;Parent=MS.gene85186.t1 |
| chr2.4 | exon | 3993036 | 3993199 | 3993036 | ID=MS.gene85186.t1.exon2;Parent=MS.gene85186.t1 |
| chr2.4 | CDS | 3993036 | 3993199 | 3993036 | ID=cds.MS.gene85186.t1;Parent=MS.gene85186.t1 |
| chr2.4 | exon | 3991011 | 3991136 | 3991011 | ID=MS.gene85186.t1.exon3;Parent=MS.gene85186.t1 |
| chr2.4 | CDS | 3991011 | 3991136 | 3991011 | ID=cds.MS.gene85186.t1;Parent=MS.gene85186.t1 |
| Gene Sequence |
| Protein sequence |
