Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85436.t1 | XP_003623967.1 | 71.4 | 203 | 35 | 3 | 52 | 231 | 408 | 610 | 1.70E-66 | 262.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85436.t1 | Q2HTJ8 | 71.4 | 203 | 35 | 3 | 52 | 231 | 408 | 610 | 1.2e-66 | 262.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene85436 | 0.803088 | 4.12E-49 | -1.69E-46 |
| MS.gene050611 | MS.gene85436 | 0.813416 | 2.59E-51 | -1.69E-46 |
| MS.gene053974 | MS.gene85436 | 0.801687 | 8.01E-49 | -1.69E-46 |
| MS.gene054801 | MS.gene85436 | 0.806609 | 7.57E-50 | -1.69E-46 |
| MS.gene055091 | MS.gene85436 | 0.803109 | 4.08E-49 | -1.69E-46 |
| MS.gene058515 | MS.gene85436 | 0.835608 | 1.52E-56 | -1.69E-46 |
| MS.gene059276 | MS.gene85436 | 0.826371 | 2.81E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85436.t1 | MTR_7g077740 | 71.569 | 204 | 33 | 3 | 52 | 231 | 408 | 610 | 1.02e-86 | 275 |
| MS.gene85436.t1 | MTR_8g030750 | 32.195 | 205 | 75 | 3 | 52 | 231 | 394 | 559 | 7.49e-17 | 79.7 |
| MS.gene85436.t1 | MTR_8g030750 | 32.195 | 205 | 75 | 3 | 52 | 231 | 394 | 559 | 7.68e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 127 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACATTCCACATTAAATT+TGG | 0.158475 | 7.2:+27077024 | None:intergenic |
| GATGATAACACAAGCATTTC+TGG | 0.208573 | 7.2:-27076923 | MS.gene85436:CDS |
| TTATGTTGCTACAGATATTA+TGG | 0.209828 | 7.2:-27077339 | MS.gene85436:intron |
| GTGAAGAAATGGTCTTTATT+AGG | 0.247930 | 7.2:+27077112 | None:intergenic |
| CAAACGCTTGACTGGTTTGC+TGG | 0.277658 | 7.2:+27076709 | None:intergenic |
| GTTCGACAGGTTCCCATCTT+TGG | 0.287401 | 7.2:-27077267 | MS.gene85436:intron |
| GGATTACTTGTTTCCTGATC+TGG | 0.312879 | 7.2:+27076730 | None:intergenic |
| AAGTTCCCTCCAGGACTTCC+AGG | 0.322188 | 7.2:+27076859 | None:intergenic |
| ATCAATAGAGGTTGCGTCCT+TGG | 0.345598 | 7.2:+27076756 | None:intergenic |
| TCTGAAGCCGGTTATCTTGT+TGG | 0.371592 | 7.2:-27076604 | MS.gene85436:CDS |
| CAATTTGTTCAGTGAAGAAA+TGG | 0.373868 | 7.2:+27077101 | None:intergenic |
| TTCTCTCCTCCTGGAAGTCC+TGG | 0.385963 | 7.2:-27076868 | MS.gene85436:CDS |
| CTGATCTGGTTGATCAATAG+AGG | 0.390787 | 7.2:+27076744 | None:intergenic |
| TGGAAGTCCTGGAGGGAACT+TGG | 0.411820 | 7.2:-27076857 | MS.gene85436:CDS |
| TCAATAGAGGTTGCGTCCTT+GGG | 0.415590 | 7.2:+27076757 | None:intergenic |
| CTCATCTCCAACAAGATAAC+CGG | 0.416683 | 7.2:+27076597 | None:intergenic |
| TCAACTTTGTCGCAAGATCT+TGG | 0.420450 | 7.2:-27076640 | MS.gene85436:CDS |
| TTAAACCACAAACGCTTGAC+TGG | 0.424438 | 7.2:+27076701 | None:intergenic |
| TTCATCTTCAGATAAAACTT+TGG | 0.429146 | 7.2:-27076803 | MS.gene85436:CDS |
| AATAAAGTATAAACCAAAGA+TGG | 0.429707 | 7.2:+27077254 | None:intergenic |
| CTCTATTGATCAACCAGATC+AGG | 0.433500 | 7.2:-27076743 | MS.gene85436:CDS |
| AGCCAGATTCTTAAAACCCT+TGG | 0.451395 | 7.2:-27076899 | MS.gene85436:CDS |
| TGAAAGATCTAATGAAGTAC+TGG | 0.454641 | 7.2:-27076677 | MS.gene85436:CDS |
| GCAAACCAGTCAAGCGTTTG+TGG | 0.459357 | 7.2:-27076706 | MS.gene85436:CDS |
| GCAGAATACTTCTCTCCTCC+TGG | 0.474425 | 7.2:-27076877 | MS.gene85436:CDS |
| AAGTGGTTCTACAAAGGAAA+AGG | 0.478404 | 7.2:-27077002 | MS.gene85436:intron |
| ATCTTCAGATAAAACTTTGG+AGG | 0.489940 | 7.2:-27076800 | MS.gene85436:CDS |
| TTCAAATTTATCTTTACCAA+CGG | 0.501837 | 7.2:+27077144 | None:intergenic |
| CCTTTCACAACATCAAACAT+AGG | 0.515479 | 7.2:+27077073 | None:intergenic |
| CATGTTGATACTTCTGAAGC+CGG | 0.520543 | 7.2:-27076616 | MS.gene85436:CDS |
| TAAAACTTTGGAGGATAATG+AGG | 0.528551 | 7.2:-27076791 | MS.gene85436:CDS |
| GGAGAGAAGTATTCTGCCAA+GGG | 0.528845 | 7.2:+27076883 | None:intergenic |
| TGATGCTCCAAGTTCCCTCC+AGG | 0.537640 | 7.2:+27076850 | None:intergenic |
| CTCCTCCTGGAAGTCCTGGA+GGG | 0.537873 | 7.2:-27076864 | MS.gene85436:CDS |
| TGAATGTTCAGATGTTCGAC+AGG | 0.554948 | 7.2:-27077280 | MS.gene85436:CDS |
| AGGAGAGAAGTATTCTGCCA+AGG | 0.557629 | 7.2:+27076882 | None:intergenic |
| ATAAAGTATAAACCAAAGAT+GGG | 0.569038 | 7.2:+27077255 | None:intergenic |
| TTTAATGTGGAATGTGAAAG+TGG | 0.578008 | 7.2:-27077019 | MS.gene85436:CDS |
| TCTCCTCCTGGAAGTCCTGG+AGG | 0.579624 | 7.2:-27076865 | MS.gene85436:CDS |
| GAAAGACTCCAAATTTAATG+TGG | 0.584373 | 7.2:-27077032 | MS.gene85436:CDS |
| TGAAGTACTGGAAATTGAGT+CGG | 0.585033 | 7.2:-27076665 | MS.gene85436:CDS |
| TGTATAGGAAAGGAGAAGCA+TGG | 0.586605 | 7.2:-27077218 | MS.gene85436:intron |
| CCTATGTTTGATGTTGTGAA+AGG | 0.590272 | 7.2:-27077073 | MS.gene85436:CDS |
| TCGCAAGCTTCAAGCAACAA+TGG | 0.595895 | 7.2:+27077306 | None:intergenic |
| TGTGAAAACAACAGCTCCAG+AGG | 0.598974 | 7.2:-27077173 | MS.gene85436:CDS |
| ATGTGAAAGTGGTTCTACAA+AGG | 0.614121 | 7.2:-27077008 | MS.gene85436:CDS |
| TGAGGATCACTTGTCGCCCA+AGG | 0.616768 | 7.2:-27076773 | MS.gene85436:CDS |
| TGATGTTGTGAAAGGAAACA+AGG | 0.661917 | 7.2:-27077065 | MS.gene85436:CDS |
| GGAGATGAGATAGTTGCTGA+AGG | 0.704201 | 7.2:-27076583 | MS.gene85436:intron |
| TTCCCTCCAGGACTTCCAGG+AGG | 0.728796 | 7.2:+27076862 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACAAGATTAAATTTAATA+TGG | + | chr7.2:27077903-27077922 | None:intergenic | 10.0% |
| !!! | ATATATTTTTTTCCTTTATA+TGG | - | chr7.2:27076800-27076819 | MS.gene85436:CDS | 10.0% |
| !! | AATTCAAACCTAAAATTATA+TGG | - | chr7.2:27076112-27076131 | MS.gene85436:intron | 15.0% |
| !!! | TACTTAATCCATATAATTTT+AGG | + | chr7.2:27076123-27076142 | None:intergenic | 15.0% |
| !! | AAAGACATTTCATCAATAAT+TGG | + | chr7.2:27078071-27078090 | None:intergenic | 20.0% |
| !! | AATAAAGTATAAACCAAAGA+TGG | + | chr7.2:27076934-27076953 | None:intergenic | 20.0% |
| !! | ACATCAACTTGTAAAATTAT+AGG | + | chr7.2:27076771-27076790 | None:intergenic | 20.0% |
| !! | ATAAAGTATAAACCAAAGAT+GGG | + | chr7.2:27076933-27076952 | None:intergenic | 20.0% |
| !! | ATATCTAAGTACATAAATGT+TGG | - | chr7.2:27078033-27078052 | MS.gene85436:intron | 20.0% |
| !! | ATTTAATATGGTAAGTAAAG+AGG | + | chr7.2:27077891-27077910 | None:intergenic | 20.0% |
| !! | TAATTGTTTGAGTGATATTA+TGG | - | chr7.2:27076534-27076553 | MS.gene85436:intron | 20.0% |
| !! | TTCAAATTTATCTTTACCAA+CGG | + | chr7.2:27077044-27077063 | None:intergenic | 20.0% |
| !!! | TAGAATTTTAAACCATCATT+GGG | - | chr7.2:27076662-27076681 | MS.gene85436:CDS | 20.0% |
| !!! | TTAGAATATTTTCTTTCAAG+TGG | + | chr7.2:27076076-27076095 | None:intergenic | 20.0% |
| !!! | TTTTTTTCCTTTATATGGAA+TGG | - | chr7.2:27076805-27076824 | MS.gene85436:CDS | 20.0% |
| ! | AATATCACTCAAACAATTAC+AGG | + | chr7.2:27076533-27076552 | None:intergenic | 25.0% |
| ! | AATTAGCCATGATGTAATAT+TGG | - | chr7.2:27076357-27076376 | MS.gene85436:intron | 25.0% |
| ! | ATCTAATGTATTATTCCTCA+AGG | - | chr7.2:27076334-27076353 | MS.gene85436:intron | 25.0% |
| ! | TTATGTTGCTACAGATATTA+TGG | - | chr7.2:27076846-27076865 | MS.gene85436:CDS | 25.0% |
| ! | TTCAAATCCTTAAAATCACA+AGG | - | chr7.2:27076615-27076634 | MS.gene85436:CDS | 25.0% |
| ! | TTCACATTCCACATTAAATT+TGG | + | chr7.2:27077164-27077183 | None:intergenic | 25.0% |
| ! | TTCATCTTCAGATAAAACTT+TGG | - | chr7.2:27077382-27077401 | MS.gene85436:intron | 25.0% |
| ! | TTTAAGGATTTGAAGGTTAA+AGG | + | chr7.2:27076609-27076628 | None:intergenic | 25.0% |
| !! | AAACTACGGTATGTTATTTA+TGG | + | chr7.2:27076309-27076328 | None:intergenic | 25.0% |
| !! | ACTTAATATTTCTGTGATAC+TGG | + | chr7.2:27076252-27076271 | None:intergenic | 25.0% |
| !! | CAATGATGGTTTAAAATTCT+AGG | + | chr7.2:27076663-27076682 | None:intergenic | 25.0% |
| !! | CTAGAATTTTAAACCATCAT+TGG | - | chr7.2:27076661-27076680 | MS.gene85436:CDS | 25.0% |
| !! | GGTTTGAATTAACTCAATTT+TGG | + | chr7.2:27076102-27076121 | None:intergenic | 25.0% |
| !! | TAAACTACAAATTCGATTTG+AGG | - | chr7.2:27077946-27077965 | MS.gene85436:intron | 25.0% |
| !! | TAATGATTTTCTGATCATCA+CGG | + | chr7.2:27076458-27076477 | None:intergenic | 25.0% |
| !! | TCAATATTTCTAAACTGTAC+TGG | + | chr7.2:27076727-27076746 | None:intergenic | 25.0% |
| !!! | AATATTTTCTTTCAAGTGGA+AGG | + | chr7.2:27076072-27076091 | None:intergenic | 25.0% |
| !!! | TTGTGATTTTAAGGATTTGA+AGG | + | chr7.2:27076616-27076635 | None:intergenic | 25.0% |
| !!! | TTTCAAGTTCTTCTATGTAT+AGG | - | chr7.2:27076952-27076971 | MS.gene85436:intron | 25.0% |
| AACTTTAATAACATAGCCAG+AGG | + | chr7.2:27077793-27077812 | None:intergenic | 30.0% | |
| ACATTAGATGCAGAAAACTA+CGG | + | chr7.2:27076323-27076342 | None:intergenic | 30.0% | |
| ACTTTAATAACATAGCCAGA+GGG | + | chr7.2:27077792-27077811 | None:intergenic | 30.0% | |
| AGTTCTTCTATGTATAGGAA+AGG | - | chr7.2:27076957-27076976 | MS.gene85436:intron | 30.0% | |
| ATCTTCAGATAAAACTTTGG+AGG | - | chr7.2:27077385-27077404 | MS.gene85436:intron | 30.0% | |
| GAAAGACTCCAAATTTAATG+TGG | - | chr7.2:27077153-27077172 | MS.gene85436:CDS | 30.0% | |
| GTGAAGAAATGGTCTTTATT+AGG | + | chr7.2:27077076-27077095 | None:intergenic | 30.0% | |
| TGAAAGATCTAATGAAGTAC+TGG | - | chr7.2:27077508-27077527 | MS.gene85436:intron | 30.0% | |
| TTTAATGTGGAATGTGAAAG+TGG | - | chr7.2:27077166-27077185 | MS.gene85436:CDS | 30.0% | |
| ! | ATGAATGCCTTGTGATTTTA+AGG | + | chr7.2:27076625-27076644 | None:intergenic | 30.0% |
| ! | ATTTTAAACCATCATTGGGA+AGG | - | chr7.2:27076666-27076685 | MS.gene85436:CDS | 30.0% |
| ! | CAATTTGTTCAGTGAAGAAA+TGG | + | chr7.2:27077087-27077106 | None:intergenic | 30.0% |
| ! | CTTTTGCCAATATTACATCA+TGG | + | chr7.2:27076366-27076385 | None:intergenic | 30.0% |
| ! | TAAAACTTTGGAGGATAATG+AGG | - | chr7.2:27077394-27077413 | MS.gene85436:intron | 30.0% |
| ! | TTATCTGAGATGCTAGATAA+CGG | - | chr7.2:27077238-27077257 | MS.gene85436:intron | 30.0% |
| CCTATGTTTGATGTTGTGAA+AGG | - | chr7.2:27077112-27077131 | MS.gene85436:CDS | 35.0% | |
| CCTTTCACAACATCAAACAT+AGG | + | chr7.2:27077115-27077134 | None:intergenic | 35.0% | |
| CTGCAAGATATCTATTCACA+AGG | - | chr7.2:27076183-27076202 | MS.gene85436:intron | 35.0% | |
| GATGATAACACAAGCATTTC+TGG | - | chr7.2:27077262-27077281 | MS.gene85436:intron | 35.0% | |
| TCCAGAACCATTCCATATAA+AGG | + | chr7.2:27076815-27076834 | None:intergenic | 35.0% | |
| TCCTTTATATGGAATGGTTC+TGG | - | chr7.2:27076811-27076830 | MS.gene85436:CDS | 35.0% | |
| TGATGTTGTGAAAGGAAACA+AGG | - | chr7.2:27077120-27077139 | MS.gene85436:CDS | 35.0% | |
| TGGTAAGTAAAGAGGTTAGT+TGG | + | chr7.2:27077883-27077902 | None:intergenic | 35.0% | |
| ! | AAGTGGTTCTACAAAGGAAA+AGG | - | chr7.2:27077183-27077202 | MS.gene85436:CDS | 35.0% |
| ! | ATGTGAAAGTGGTTCTACAA+AGG | - | chr7.2:27077177-27077196 | MS.gene85436:CDS | 35.0% |
| ! | CCAACTTTTCTCTATATGCA+GGG | + | chr7.2:27077844-27077863 | None:intergenic | 35.0% |
| ! | TCCAACTTTTCTCTATATGC+AGG | + | chr7.2:27077845-27077864 | None:intergenic | 35.0% |
| ! | TCTAGTGCAAGAATTTTACC+AGG | + | chr7.2:27077759-27077778 | None:intergenic | 35.0% |
| !! | TGAAGTACTGGAAATTGAGT+CGG | - | chr7.2:27077520-27077539 | MS.gene85436:intron | 35.0% |
| !! | TTTTCTTTCAAGTGGAAGGA+AGG | + | chr7.2:27076068-27076087 | None:intergenic | 35.0% |
| ACATCATGGCTAATTCCTTG+AGG | + | chr7.2:27076352-27076371 | None:intergenic | 40.0% | |
| AGATCCTTCGTTGTTTGATC+AGG | - | chr7.2:27078107-27078126 | MS.gene85436:intron | 40.0% | |
| AGCCAGATTCTTAAAACCCT+TGG | - | chr7.2:27077286-27077305 | MS.gene85436:CDS | 40.0% | |
| AGGATCTAGTATCTTGTCTG+AGG | + | chr7.2:27078094-27078113 | None:intergenic | 40.0% | |
| ATTCTTGCACTAGAACCTTG+AGG | - | chr7.2:27077765-27077784 | MS.gene85436:intron | 40.0% | |
| CCCTGCATATAGAGAAAAGT+TGG | - | chr7.2:27077841-27077860 | MS.gene85436:intron | 40.0% | |
| CTCATCTCCAACAAGATAAC+CGG | + | chr7.2:27077591-27077610 | None:intergenic | 40.0% | |
| CTCTATTGATCAACCAGATC+AGG | - | chr7.2:27077442-27077461 | MS.gene85436:intron | 40.0% | |
| CTGATCTGGTTGATCAATAG+AGG | + | chr7.2:27077444-27077463 | None:intergenic | 40.0% | |
| GGATTACTTGTTTCCTGATC+TGG | + | chr7.2:27077458-27077477 | None:intergenic | 40.0% | |
| GGTTTCGAACATATACGTTG+AGG | - | chr7.2:27077204-27077223 | MS.gene85436:CDS | 40.0% | |
| GTAATTGTACGCAAGAACAC+AGG | + | chr7.2:27077679-27077698 | None:intergenic | 40.0% | |
| TCAACTTTGTCGCAAGATCT+TGG | - | chr7.2:27077545-27077564 | MS.gene85436:intron | 40.0% | |
| TCTACCTGATCAAACAACGA+AGG | + | chr7.2:27078114-27078133 | None:intergenic | 40.0% | |
| TGAATGTTCAGATGTTCGAC+AGG | - | chr7.2:27076905-27076924 | MS.gene85436:CDS | 40.0% | |
| TGTATAGGAAAGGAGAAGCA+TGG | - | chr7.2:27076967-27076986 | MS.gene85436:intron | 40.0% | |
| TTAAACCACAAACGCTTGAC+TGG | + | chr7.2:27077487-27077506 | None:intergenic | 40.0% | |
| ! | AATTTTACCAGGCTGACATG+TGG | + | chr7.2:27077748-27077767 | None:intergenic | 40.0% |
| !! | CATGTTGATACTTCTGAAGC+CGG | - | chr7.2:27077569-27077588 | MS.gene85436:intron | 40.0% |
| !!! | TGCCAAGGGTTTTAAGAATC+TGG | + | chr7.2:27077291-27077310 | None:intergenic | 40.0% |
| !!! | TTACCAACGGTTTTTTCCTC+TGG | + | chr7.2:27077031-27077050 | None:intergenic | 40.0% |
| AAGGAAGGATGCATACATGC+TGG | + | chr7.2:27076053-27076072 | None:intergenic | 45.0% | |
| AGTCAAAGCCTTCCCAATGA+TGG | + | chr7.2:27076677-27076696 | None:intergenic | 45.0% | |
| ATCAATAGAGGTTGCGTCCT+TGG | + | chr7.2:27077432-27077451 | None:intergenic | 45.0% | |
| CAAACCTAGTCCTGGACATA+TGG | + | chr7.2:27076411-27076430 | None:intergenic | 45.0% | |
| CATTTGTCCTTTCTTCACCC+TGG | - | chr7.2:27077717-27077736 | MS.gene85436:intron | 45.0% | |
| GGAGATGAGATAGTTGCTGA+AGG | - | chr7.2:27077602-27077621 | MS.gene85436:intron | 45.0% | |
| TCAATAGAGGTTGCGTCCTT+GGG | + | chr7.2:27077431-27077450 | None:intergenic | 45.0% | |
| TCGCAAGCTTCAAGCAACAA+TGG | + | chr7.2:27076882-27076901 | None:intergenic | 45.0% | |
| TGTGAAAACAACAGCTCCAG+AGG | - | chr7.2:27077012-27077031 | MS.gene85436:CDS | 45.0% | |
| TTGAAGGTTAAAGGCAGCAC+AGG | + | chr7.2:27076600-27076619 | None:intergenic | 45.0% | |
| ! | TCATTGGGAAGGCTTTGACT+TGG | - | chr7.2:27076677-27076696 | MS.gene85436:CDS | 45.0% |
| ! | TCTGAAGCCGGTTATCTTGT+TGG | - | chr7.2:27077581-27077600 | MS.gene85436:intron | 45.0% |
| !! | AGGAGAGAAGTATTCTGCCA+AGG | + | chr7.2:27077306-27077325 | None:intergenic | 45.0% |
| !! | GGAGAGAAGTATTCTGCCAA+GGG | + | chr7.2:27077305-27077324 | None:intergenic | 45.0% |
| ACCTAGTCCTGGACATATGG+AGG | + | chr7.2:27076408-27076427 | None:intergenic | 50.0% | |
| CCAGGACTAGGTTTGCACAA+AGG | - | chr7.2:27076416-27076435 | MS.gene85436:intron | 50.0% | |
| CCTAGTCCTGGACATATGGA+GGG | + | chr7.2:27076407-27076426 | None:intergenic | 50.0% | |
| CCTCTATCGAATCGATCCAC+TGG | + | chr7.2:27077986-27078005 | None:intergenic | 50.0% | |
| CCTTTGTGCAAACCTAGTCC+TGG | + | chr7.2:27076419-27076438 | None:intergenic | 50.0% | |
| GCAAACCAGTCAAGCGTTTG+TGG | - | chr7.2:27077479-27077498 | MS.gene85436:intron | 50.0% | |
| GCAGAATACTTCTCTCCTCC+TGG | - | chr7.2:27077308-27077327 | MS.gene85436:CDS | 50.0% | |
| GCTCCAGAGGAAAAAACCGT+TGG | - | chr7.2:27077025-27077044 | MS.gene85436:CDS | 50.0% | |
| GTTCGACAGGTTCCCATCTT+TGG | - | chr7.2:27076918-27076937 | MS.gene85436:CDS | 50.0% | |
| !! | CAAACGCTTGACTGGTTTGC+TGG | + | chr7.2:27077479-27077498 | None:intergenic | 50.0% |
| !! | CCAGTGGATCGATTCGATAG+AGG | - | chr7.2:27077983-27078002 | MS.gene85436:intron | 50.0% |
| AAGTTCCCTCCAGGACTTCC+AGG | + | chr7.2:27077329-27077348 | None:intergenic | 55.0% | |
| ACATAGCCAGAGGGTCCTCA+AGG | + | chr7.2:27077783-27077802 | None:intergenic | 55.0% | |
| CCCTCCATATGTCCAGGACT+AGG | - | chr7.2:27076404-27076423 | MS.gene85436:intron | 55.0% | |
| CTAGAACCTTGAGGACCCTC+TGG | - | chr7.2:27077774-27077793 | MS.gene85436:intron | 55.0% | |
| GCTGACATGTGGAGTAGCCA+GGG | + | chr7.2:27077737-27077756 | None:intergenic | 55.0% | |
| GGAACACGACTCTTCACCAG+TGG | - | chr7.2:27077967-27077986 | MS.gene85436:intron | 55.0% | |
| GGAGTAGCCAGGGTGAAGAA+AGG | + | chr7.2:27077727-27077746 | None:intergenic | 55.0% | |
| TGACAGCCCTCCATATGTCC+AGG | - | chr7.2:27076398-27076417 | MS.gene85436:intron | 55.0% | |
| TGAGGATCACTTGTCGCCCA+AGG | - | chr7.2:27077412-27077431 | MS.gene85436:intron | 55.0% | |
| TGATGCTCCAAGTTCCCTCC+AGG | + | chr7.2:27077338-27077357 | None:intergenic | 55.0% | |
| TGGAAGTCCTGGAGGGAACT+TGG | - | chr7.2:27077328-27077347 | MS.gene85436:CDS | 55.0% | |
| TTCTCTCCTCCTGGAAGTCC+TGG | - | chr7.2:27077317-27077336 | MS.gene85436:CDS | 55.0% | |
| CTCCTCCTGGAAGTCCTGGA+GGG | - | chr7.2:27077321-27077340 | MS.gene85436:CDS | 60.0% | |
| GGCTACTCCACATGTCAGCC+TGG | - | chr7.2:27077738-27077757 | MS.gene85436:intron | 60.0% | |
| GGCTGACATGTGGAGTAGCC+AGG | + | chr7.2:27077738-27077757 | None:intergenic | 60.0% | |
| TCTCCTCCTGGAAGTCCTGG+AGG | - | chr7.2:27077320-27077339 | MS.gene85436:CDS | 60.0% | |
| TTCCCTCCAGGACTTCCAGG+AGG | + | chr7.2:27077326-27077345 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 27076047 | 27078160 | 27076047 | ID=MS.gene85436 |
| chr7.2 | mRNA | 27076047 | 27078160 | 27076047 | ID=MS.gene85436.t1;Parent=MS.gene85436 |
| chr7.2 | exon | 27078151 | 27078160 | 27078151 | ID=MS.gene85436.t1.exon1;Parent=MS.gene85436.t1 |
| chr7.2 | CDS | 27078151 | 27078160 | 27078151 | ID=cds.MS.gene85436.t1;Parent=MS.gene85436.t1 |
| chr7.2 | exon | 27077268 | 27077347 | 27077268 | ID=MS.gene85436.t1.exon2;Parent=MS.gene85436.t1 |
| chr7.2 | CDS | 27077268 | 27077347 | 27077268 | ID=cds.MS.gene85436.t1;Parent=MS.gene85436.t1 |
| chr7.2 | exon | 27077003 | 27077233 | 27077003 | ID=MS.gene85436.t1.exon3;Parent=MS.gene85436.t1 |
| chr7.2 | CDS | 27077003 | 27077233 | 27077003 | ID=cds.MS.gene85436.t1;Parent=MS.gene85436.t1 |
| chr7.2 | exon | 27076584 | 27076953 | 27076584 | ID=MS.gene85436.t1.exon4;Parent=MS.gene85436.t1 |
| chr7.2 | CDS | 27076584 | 27076953 | 27076584 | ID=cds.MS.gene85436.t1;Parent=MS.gene85436.t1 |
| chr7.2 | exon | 27076047 | 27076078 | 27076047 | ID=MS.gene85436.t1.exon5;Parent=MS.gene85436.t1 |
| chr7.2 | CDS | 27076047 | 27076078 | 27076047 | ID=cds.MS.gene85436.t1;Parent=MS.gene85436.t1 |
| Gene Sequence |
| Protein sequence |
