Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85567.t1 | XP_003617509.1 | 92.2 | 459 | 16 | 2 | 44 | 502 | 1 | 439 | 2.40E-256 | 894.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85567.t1 | Q9LJU7 | 67.8 | 459 | 126 | 3 | 44 | 502 | 1 | 437 | 1.1e-196 | 687.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85567.t1 | G7K8G7 | 92.2 | 459 | 16 | 2 | 44 | 502 | 1 | 439 | 1.7e-256 | 894.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052190 | MS.gene85567 | 0.810098 | 1.36E-50 | -1.69E-46 |
MS.gene060843 | MS.gene85567 | 0.803819 | 2.91E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene007238 | MS.gene85567 | PPI |
MS.gene24675 | MS.gene85567 | PPI |
MS.gene24727 | MS.gene85567 | PPI |
MS.gene050332 | MS.gene85567 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85567.t1 | MTR_5g092360 | 92.593 | 459 | 14 | 2 | 44 | 502 | 1 | 439 | 0.0 | 882 |
MS.gene85567.t1 | MTR_3g051240 | 75.221 | 452 | 91 | 2 | 51 | 502 | 3 | 433 | 0.0 | 723 |
MS.gene85567.t1 | MTR_1g060360 | 61.153 | 399 | 135 | 2 | 88 | 485 | 41 | 420 | 0.0 | 516 |
MS.gene85567.t1 | MTR_7g104330 | 56.651 | 436 | 167 | 3 | 48 | 482 | 11 | 425 | 4.23e-180 | 513 |
MS.gene85567.t1 | MTR_7g104360 | 56.802 | 419 | 155 | 5 | 70 | 485 | 27 | 422 | 8.65e-166 | 476 |
MS.gene85567.t1 | MTR_0188s0020 | 39.953 | 428 | 210 | 10 | 93 | 493 | 61 | 468 | 5.53e-94 | 293 |
MS.gene85567.t1 | MTR_4g115670 | 38.864 | 440 | 221 | 9 | 88 | 501 | 50 | 467 | 6.92e-93 | 291 |
MS.gene85567.t1 | MTR_6g013050 | 35.370 | 540 | 230 | 14 | 41 | 479 | 5 | 526 | 7.80e-93 | 294 |
MS.gene85567.t1 | MTR_4g037105 | 40.338 | 414 | 200 | 9 | 93 | 479 | 55 | 448 | 2.17e-90 | 284 |
MS.gene85567.t1 | MTR_3g083810 | 39.083 | 458 | 205 | 10 | 93 | 479 | 71 | 525 | 9.59e-90 | 285 |
MS.gene85567.t1 | MTR_1g112630 | 40.482 | 415 | 199 | 11 | 93 | 479 | 56 | 450 | 1.31e-87 | 277 |
MS.gene85567.t1 | MTR_3g083820 | 38.646 | 458 | 207 | 11 | 93 | 479 | 71 | 525 | 2.15e-87 | 278 |
MS.gene85567.t1 | MTR_7g056403 | 37.500 | 456 | 215 | 9 | 93 | 479 | 70 | 524 | 2.80e-87 | 278 |
MS.gene85567.t1 | MTR_6g013050 | 34.783 | 506 | 227 | 12 | 41 | 454 | 5 | 499 | 9.04e-83 | 266 |
MS.gene85567.t1 | MTR_1g052505 | 29.969 | 327 | 182 | 10 | 106 | 389 | 209 | 531 | 3.14e-33 | 133 |
MS.gene85567.t1 | MTR_4g037670 | 30.341 | 323 | 181 | 9 | 106 | 388 | 231 | 549 | 3.97e-33 | 133 |
MS.gene85567.t1 | MTR_5g092300 | 75.385 | 65 | 14 | 1 | 424 | 488 | 4 | 66 | 1.12e-25 | 100 |
MS.gene85567.t1 | MTR_4g082930 | 27.765 | 425 | 228 | 15 | 93 | 451 | 144 | 555 | 2.05e-25 | 110 |
MS.gene85567.t1 | MTR_4g082940 | 28.571 | 420 | 217 | 18 | 93 | 451 | 144 | 541 | 1.22e-23 | 105 |
MS.gene85567.t1 | MTR_5g092450 | 53.125 | 96 | 6 | 2 | 359 | 454 | 11 | 67 | 1.17e-20 | 86.7 |
MS.gene85567.t1 | MTR_5g045600 | 27.485 | 342 | 186 | 13 | 113 | 403 | 215 | 545 | 1.52e-19 | 92.4 |
MS.gene85567.t1 | MTR_3g074930 | 23.368 | 475 | 264 | 18 | 86 | 487 | 176 | 623 | 3.39e-19 | 91.3 |
MS.gene85567.t1 | MTR_3g074930 | 23.404 | 470 | 263 | 18 | 86 | 487 | 176 | 616 | 2.81e-18 | 88.6 |
MS.gene85567.t1 | MTR_8g063080 | 27.778 | 306 | 165 | 11 | 149 | 403 | 238 | 538 | 5.22e-18 | 87.4 |
MS.gene85567.t1 | MTR_4g103520 | 24.766 | 428 | 228 | 18 | 106 | 468 | 198 | 596 | 1.04e-17 | 86.7 |
MS.gene85567.t1 | MTR_4g103520 | 24.709 | 429 | 229 | 18 | 105 | 468 | 120 | 519 | 1.61e-17 | 85.9 |
MS.gene85567.t1 | MTR_3g074970 | 22.976 | 457 | 234 | 17 | 88 | 488 | 127 | 521 | 3.33e-16 | 81.6 |
MS.gene85567.t1 | MTR_5g092420 | 74.359 | 39 | 10 | 0 | 352 | 390 | 6 | 44 | 9.13e-12 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene85567.t1 | AT3G20500 | 67.756 | 459 | 126 | 3 | 44 | 502 | 1 | 437 | 0.0 | 671 |
MS.gene85567.t1 | AT3G52820 | 60.302 | 398 | 138 | 2 | 86 | 482 | 40 | 418 | 1.43e-177 | 506 |
MS.gene85567.t1 | AT3G52810 | 54.505 | 455 | 179 | 5 | 45 | 494 | 3 | 434 | 3.69e-170 | 487 |
MS.gene85567.t1 | AT3G52780 | 54.484 | 446 | 172 | 9 | 49 | 487 | 4 | 425 | 1.75e-167 | 480 |
MS.gene85567.t1 | AT3G52780 | 56.805 | 338 | 135 | 7 | 49 | 380 | 4 | 336 | 2.01e-131 | 385 |
MS.gene85567.t1 | AT5G34850 | 35.845 | 491 | 253 | 11 | 46 | 499 | 4 | 469 | 1.12e-93 | 293 |
MS.gene85567.t1 | AT1G56360 | 37.155 | 471 | 238 | 13 | 44 | 479 | 1 | 448 | 1.35e-88 | 280 |
MS.gene85567.t1 | AT4G36350 | 36.695 | 466 | 240 | 11 | 47 | 479 | 5 | 448 | 3.31e-88 | 278 |
MS.gene85567.t1 | AT3G07130 | 41.546 | 414 | 188 | 7 | 119 | 479 | 103 | 515 | 1.92e-87 | 278 |
MS.gene85567.t1 | AT2G16430 | 37.229 | 462 | 238 | 13 | 49 | 479 | 12 | 452 | 3.23e-83 | 266 |
MS.gene85567.t1 | AT4G13700 | 38.979 | 431 | 193 | 12 | 44 | 406 | 1 | 429 | 2.76e-81 | 260 |
MS.gene85567.t1 | AT3G07130 | 38.479 | 447 | 188 | 8 | 119 | 479 | 103 | 548 | 1.08e-80 | 262 |
MS.gene85567.t1 | AT2G27190 | 35.897 | 468 | 240 | 13 | 46 | 479 | 12 | 453 | 1.59e-80 | 258 |
MS.gene85567.t1 | AT2G18130 | 38.049 | 410 | 197 | 9 | 93 | 479 | 54 | 429 | 2.71e-79 | 254 |
MS.gene85567.t1 | AT2G16430 | 40.580 | 345 | 162 | 9 | 159 | 479 | 7 | 332 | 4.86e-72 | 233 |
MS.gene85567.t1 | AT2G32770 | 38.095 | 399 | 188 | 8 | 138 | 479 | 138 | 534 | 3.14e-68 | 228 |
MS.gene85567.t1 | AT4G13700 | 36.070 | 402 | 187 | 12 | 44 | 377 | 1 | 400 | 2.65e-63 | 212 |
MS.gene85567.t1 | AT2G32770 | 37.265 | 373 | 175 | 8 | 138 | 453 | 57 | 427 | 7.13e-60 | 203 |
MS.gene85567.t1 | AT3G46120 | 32.870 | 432 | 160 | 14 | 93 | 496 | 54 | 383 | 3.68e-54 | 187 |
MS.gene85567.t1 | AT2G32770 | 33.835 | 399 | 176 | 9 | 138 | 479 | 138 | 505 | 7.90e-52 | 184 |
MS.gene85567.t1 | AT1G52940 | 39.738 | 229 | 118 | 11 | 93 | 303 | 15 | 241 | 3.87e-33 | 126 |
MS.gene85567.t1 | AT2G03450 | 26.180 | 466 | 262 | 16 | 93 | 492 | 143 | 592 | 1.18e-28 | 120 |
MS.gene85567.t1 | AT1G13900 | 27.097 | 465 | 257 | 19 | 93 | 492 | 145 | 592 | 8.94e-26 | 111 |
MS.gene85567.t1 | AT5G50400 | 25.806 | 279 | 158 | 9 | 214 | 468 | 255 | 508 | 1.78e-17 | 85.9 |
MS.gene85567.t1 | AT5G50400 | 25.806 | 279 | 158 | 9 | 214 | 468 | 327 | 580 | 2.65e-17 | 85.5 |
MS.gene85567.t1 | AT4G24890 | 26.568 | 271 | 146 | 11 | 214 | 459 | 331 | 573 | 2.83e-16 | 82.0 |
MS.gene85567.t1 | AT1G13750 | 24.802 | 379 | 191 | 14 | 149 | 468 | 239 | 582 | 4.75e-16 | 81.6 |
Find 120 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCACCTTCATTTGTAGAATA+TGG | 0.176309 | 1.3:+54661031 | MS.gene85567:CDS |
CTTACATCATTGTTGTTTAC+AGG | 0.221158 | 1.3:+54662541 | MS.gene85567:CDS |
CACCATCACCAATAGTTATA+TGG | 0.252632 | 1.3:-54662377 | None:intergenic |
AAGATACACCATACTATAAT+TGG | 0.253086 | 1.3:+54661130 | MS.gene85567:CDS |
TAACTATTAAGGTTGTTTAT+TGG | 0.257152 | 1.3:+54662499 | MS.gene85567:intron |
CTGATTGTATGCAACATCTT+TGG | 0.275554 | 1.3:+54661356 | MS.gene85567:CDS |
CAGCTCACCATGACCAAAAC+TGG | 0.283751 | 1.3:-54662604 | None:intergenic |
ATATGATGTTTACCTTCTTC+CGG | 0.295930 | 1.3:+54661318 | MS.gene85567:CDS |
CCAGCCACAGCAAAAGTAAT+TGG | 0.296149 | 1.3:-54661238 | None:intergenic |
CAATTAAGGCCGATGATATC+TGG | 0.304317 | 1.3:+54662685 | MS.gene85567:CDS |
TAAACTCAACTCATGCCTTC+TGG | 0.320354 | 1.3:+54662634 | MS.gene85567:CDS |
GCCTATGAGCTAAGCCTTCT+CGG | 0.323237 | 1.3:-54662404 | None:intergenic |
TTTGCTGTGGCTGGCGATCT+TGG | 0.323641 | 1.3:+54661247 | MS.gene85567:CDS |
CCATACTATAATTGGACCTT+TGG | 0.333458 | 1.3:+54661138 | MS.gene85567:CDS |
TATGATGTTTACCTTCTTCC+GGG | 0.355153 | 1.3:+54661319 | MS.gene85567:CDS |
GAATTCCGTGAAGCCAGTTT+TGG | 0.358064 | 1.3:+54662591 | MS.gene85567:CDS |
AAAGTAATTGGAAATTTAGA+TGG | 0.363207 | 1.3:-54661226 | None:intergenic |
TTGTATCGTATAATTCTAGA+TGG | 0.365272 | 1.3:+54661482 | MS.gene85567:CDS |
AAGAATATGATGACATCATT+AGG | 0.369279 | 1.3:+54659877 | MS.gene85567:CDS |
TGATAATGACGAGTCAATTA+AGG | 0.376333 | 1.3:+54662671 | MS.gene85567:CDS |
TGACAGAAACGCGTGTATAA+TGG | 0.379695 | 1.3:+54662330 | MS.gene85567:intron |
TGATATCTGGATAACCTCTT+TGG | 0.380204 | 1.3:+54662698 | MS.gene85567:CDS |
CCAAAGGTCCAATTATAGTA+TGG | 0.380796 | 1.3:-54661138 | None:intergenic |
TGATTGTATGCAACATCTTT+GGG | 0.398477 | 1.3:+54661357 | MS.gene85567:CDS |
AGCGTTGATTTAGTTCTTGC+TGG | 0.416104 | 1.3:+54662198 | MS.gene85567:CDS |
CATGGTGATGTTGTCAAAGT+TGG | 0.417007 | 1.3:-54659979 | None:intergenic |
CAACATCTTTGGGACTCGTT+TGG | 0.426824 | 1.3:+54661367 | MS.gene85567:CDS |
AAGTTGGGTATAACAGTAAC+TGG | 0.428741 | 1.3:-54659963 | None:intergenic |
AATTCTGACCACTTTGGTTG+TGG | 0.430371 | 1.3:-54662573 | None:intergenic |
GGTGTTCATGTTATCATGCT+AGG | 0.430528 | 1.3:+54661565 | MS.gene85567:CDS |
ATCCCAACCTTACCCTCAAC+AGG | 0.435642 | 1.3:+54660133 | MS.gene85567:CDS |
CAGGTACATTTATCTTTGGC+AGG | 0.436678 | 1.3:+54660965 | MS.gene85567:intron |
AGTTTGACCTGTTGAGGGTA+AGG | 0.448971 | 1.3:-54660140 | None:intergenic |
CATGACCAAAACTGGCTTCA+CGG | 0.449213 | 1.3:-54662596 | None:intergenic |
TGTCAAAGGTGGACAGGAAA+AGG | 0.453174 | 1.3:+54662064 | MS.gene85567:CDS |
GCTGGCGATCTTGGTCAAAC+TGG | 0.454476 | 1.3:+54661256 | MS.gene85567:CDS |
ATGTTTGTCATCAGTTATCC+AGG | 0.471536 | 1.3:-54661008 | None:intergenic |
GGCACCGTCCATATAACTAT+TGG | 0.473838 | 1.3:+54662369 | MS.gene85567:CDS |
AACAAGGCTCACCAAGGCGC+AGG | 0.474464 | 1.3:+54662132 | MS.gene85567:CDS |
GACCTGTTGAGGGTAAGGTT+GGG | 0.475250 | 1.3:-54660135 | None:intergenic |
TGACCTGTTGAGGGTAAGGT+TGG | 0.482503 | 1.3:-54660136 | None:intergenic |
ACCGAGAAGGCTTAGCTCAT+AGG | 0.485264 | 1.3:+54662403 | MS.gene85567:CDS |
CAACAATGATGTAAGAATAC+AGG | 0.485420 | 1.3:-54662533 | None:intergenic |
AAAGAGAGTTTGACCTGTTG+AGG | 0.487017 | 1.3:-54660146 | None:intergenic |
CAACTCATGCCTTCTGGAGT+TGG | 0.487313 | 1.3:+54662640 | MS.gene85567:CDS |
AAGAATGAATTTGAGTTCCA+TGG | 0.488430 | 1.3:-54659997 | None:intergenic |
AATTATATGTTATATAGCTC+AGG | 0.489483 | 1.3:+54661106 | MS.gene85567:CDS |
GTTGATCCACTTTCCTCAAA+CGG | 0.490751 | 1.3:-54661511 | None:intergenic |
ACTTAAACATTCCATGGCCA+TGG | 0.491149 | 1.3:+54660102 | MS.gene85567:CDS |
TGTTCATGCTTATGAACGTT+CGG | 0.494726 | 1.3:+54662224 | MS.gene85567:CDS |
TAGATGGAAAATGCCGTTTG+AGG | 0.495189 | 1.3:+54661498 | MS.gene85567:CDS |
GTTCCATATTCTACAAATGA+AGG | 0.509529 | 1.3:-54661034 | None:intergenic |
TCATATCATCCCCTGCGCCT+TGG | 0.511346 | 1.3:-54662143 | None:intergenic |
AAGAGAGTTTGACCTGTTGA+GGG | 0.512663 | 1.3:-54660145 | None:intergenic |
AAGATCTGTCAAAGGTGGAC+AGG | 0.518140 | 1.3:+54662058 | MS.gene85567:CDS |
ATGAAAGATCACCCGGAAGA+AGG | 0.520658 | 1.3:-54661330 | None:intergenic |
GGACTCGTTTGGTAGGCTTG+TGG | 0.525474 | 1.3:+54661378 | MS.gene85567:CDS |
GCGATCTTGGTCAAACTGGT+TGG | 0.528945 | 1.3:+54661260 | MS.gene85567:CDS |
CACGGCCTTGCACTAGCAAA+CGG | 0.529732 | 1.3:-54661403 | None:intergenic |
TTTCCTTCTGTTACCATCCA+CGG | 0.529767 | 1.3:-54661421 | None:intergenic |
ATGGTGATGTTGTCAAAGTT+GGG | 0.531195 | 1.3:-54659978 | None:intergenic |
ATATAACATATAATTATAAG+AGG | 0.532972 | 1.3:-54661098 | None:intergenic |
ATGCCTTCTGGAGTTGGCAT+AGG | 0.534697 | 1.3:+54662646 | MS.gene85567:CDS |
TCACGGAATTCTGACCACTT+TGG | 0.536302 | 1.3:-54662579 | None:intergenic |
ATAAGAACAAACATGAGCTC+AGG | 0.537422 | 1.3:+54662739 | MS.gene85567:CDS |
GTAATTGGAAATTTAGATGG+AGG | 0.539372 | 1.3:-54661223 | None:intergenic |
GTGTTCATGTTATCATGCTA+GGG | 0.541956 | 1.3:+54661566 | MS.gene85567:CDS |
CTTAAACATTCCATGGCCAT+GGG | 0.543217 | 1.3:+54660103 | MS.gene85567:CDS |
CATATAACTATTGGTGATGG+TGG | 0.543864 | 1.3:+54662378 | MS.gene85567:CDS |
ATAACCTCTTTGGTAAGCTC+AGG | 0.544896 | 1.3:+54662708 | MS.gene85567:CDS |
TGCTAGTGCAAGGCCGTGGA+TGG | 0.546368 | 1.3:+54661408 | MS.gene85567:CDS |
TGGAGCCGTTTGCTAGTGCA+AGG | 0.547738 | 1.3:+54661398 | MS.gene85567:CDS |
GATTTAGAATCCCATGGCCA+TGG | 0.551935 | 1.3:-54660113 | None:intergenic |
ATTATACGATACAAATTCAT+CGG | 0.559189 | 1.3:-54661473 | None:intergenic |
TGAAATAACACAAGCAGCCA+AGG | 0.561724 | 1.3:-54662090 | None:intergenic |
AGAGCAATACAGATGGCTAA+AGG | 0.563220 | 1.3:+54661615 | MS.gene85567:CDS |
ACAAGGCTCACCAAGGCGCA+GGG | 0.565155 | 1.3:+54662133 | MS.gene85567:CDS |
AACAGTAACTGGTGGAAGGA+AGG | 0.566231 | 1.3:-54659952 | None:intergenic |
ATAAAACATAAGATCAGAAG+TGG | 0.571378 | 1.3:+54659906 | MS.gene85567:CDS |
CGTTTGCTAGTGCAAGGCCG+TGG | 0.571538 | 1.3:+54661404 | MS.gene85567:CDS |
ATCTTTGGGACTCGTTTGGT+AGG | 0.580248 | 1.3:+54661371 | MS.gene85567:CDS |
AAAATGCCGTTTGAGGAAAG+TGG | 0.584130 | 1.3:+54661505 | MS.gene85567:CDS |
AACATATTGATCAGCAGTGA+CGG | 0.585626 | 1.3:-54660060 | None:intergenic |
GGTTGGGATTTAGAATCCCA+TGG | 0.602227 | 1.3:-54660119 | None:intergenic |
GTCCATATAACTATTGGTGA+TGG | 0.602339 | 1.3:+54662375 | MS.gene85567:CDS |
TTGTGTTATTTCACGTGCCG+TGG | 0.602886 | 1.3:+54662100 | MS.gene85567:CDS |
GTAGAATATGGAACATTACC+TGG | 0.603088 | 1.3:+54661043 | MS.gene85567:CDS |
GGATGATATGATGACAGTCA+TGG | 0.603599 | 1.3:+54662155 | MS.gene85567:CDS |
AACTGGTGGAAGGAAGGAAG+AGG | 0.605240 | 1.3:-54659946 | None:intergenic |
TACATGGTATTATATTCCAA+AGG | 0.607049 | 1.3:-54661154 | None:intergenic |
ATTCCTATGCCAACTCCAGA+AGG | 0.608575 | 1.3:-54662649 | None:intergenic |
GCATCCTGAGCTTACCAAAG+AGG | 0.609678 | 1.3:-54662712 | None:intergenic |
TAACATATAATTATAAGAGG+TGG | 0.611323 | 1.3:-54661095 | None:intergenic |
GGTGATGGTGGAAACCGAGA+AGG | 0.616947 | 1.3:+54662390 | MS.gene85567:CDS |
AGATATGATTCAATATCTGA+AGG | 0.617637 | 1.3:+54661067 | MS.gene85567:CDS |
AGAGGTTATCCAGATATCAT+CGG | 0.619399 | 1.3:-54662694 | None:intergenic |
TCAGCATATGAAAGATCACC+CGG | 0.620769 | 1.3:-54661337 | None:intergenic |
AACAGAAGGAAATCATGAAG+AGG | 0.625469 | 1.3:+54661432 | MS.gene85567:CDS |
TGGACAGGAAAAGGACACCT+TGG | 0.626483 | 1.3:+54662073 | MS.gene85567:CDS |
ACGCTGGCAGCATAAAGCAA+TGG | 0.627780 | 1.3:-54662180 | None:intergenic |
ACAAATTCATCGGTTAACAA+TGG | 0.636241 | 1.3:-54661463 | None:intergenic |
TCTACAGGAAGATCTGTCAA+AGG | 0.636721 | 1.3:+54662050 | MS.gene85567:intron |
ACAGACACATGAGAATAACC+TGG | 0.637151 | 1.3:+54660990 | MS.gene85567:CDS |
ACAGGAAGATCTGTCAAAGG+TGG | 0.639546 | 1.3:+54662053 | MS.gene85567:intron |
AGCAAGAACTAAATCAACGC+TGG | 0.641446 | 1.3:-54662196 | None:intergenic |
GTATAACAGTAACTGGTGGA+AGG | 0.644737 | 1.3:-54659956 | None:intergenic |
TGGTTGGACTAAATCAACAT+TGG | 0.647792 | 1.3:+54661276 | MS.gene85567:CDS |
ATCACCAATAGTTATATGGA+CGG | 0.650019 | 1.3:-54662373 | None:intergenic |
AGGCCGTGGATGGTAACAGA+AGG | 0.651742 | 1.3:+54661418 | MS.gene85567:CDS |
GATATTGAATCATATCTACC+AGG | 0.651988 | 1.3:-54661061 | None:intergenic |
ACATATATCCACAACCAAAG+TGG | 0.656207 | 1.3:+54662565 | MS.gene85567:CDS |
CAAGGCTCACCAAGGCGCAG+GGG | 0.658372 | 1.3:+54662134 | MS.gene85567:CDS |
TTGGGTATAACAGTAACTGG+TGG | 0.660084 | 1.3:-54659960 | None:intergenic |
GTTATATGGACGGTGCCACA+AGG | 0.660432 | 1.3:-54662363 | None:intergenic |
CAACTTTGACAACATCACCA+TGG | 0.667387 | 1.3:+54659980 | MS.gene85567:CDS |
AATGGAAGATTAGATCCTTG+TGG | 0.667711 | 1.3:+54662348 | MS.gene85567:CDS |
AGTACTCAGAGCAATACAGA+TGG | 0.679754 | 1.3:+54661608 | MS.gene85567:CDS |
AATAGTAACAAGGCTCACCA+AGG | 0.684934 | 1.3:+54662126 | MS.gene85567:CDS |
GCCGTGGTATAATAGTAACA+AGG | 0.700336 | 1.3:+54662116 | MS.gene85567:CDS |
GCCTTGTTACTATTATACCA+CGG | 0.702987 | 1.3:-54662117 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATAACATATAATTATAAG+AGG | - | chr1.3:54661101-54661120 | None:intergenic | 10.0% |
!! | TATGTATGTTTATTTATTTA+GGG | + | chr1.3:54660584-54660603 | MS.gene85567:intron | 10.0% |
!! | TTATGTATGTTTATTTATTT+AGG | + | chr1.3:54660583-54660602 | MS.gene85567:intron | 10.0% |
!!! | AAAAAATCTCATATTTTTTT+TGG | - | chr1.3:54660460-54660479 | None:intergenic | 10.0% |
!!! | TTTTATATTTTTTTTGATTC+TGG | + | chr1.3:54660224-54660243 | MS.gene85567:intron | 10.0% |
!! | TTTAATTGCTTGTATTATTA+GGG | + | chr1.3:54660289-54660308 | MS.gene85567:intron | 15.0% |
!!! | TAAAAATTTGTTATCTGAAT+TGG | + | chr1.3:54662453-54662472 | MS.gene85567:intron | 15.0% |
!! | AAACAACCTTAATAGTTATA+GGG | - | chr1.3:54662497-54662516 | None:intergenic | 20.0% |
!! | AAAGTAATTGGAAATTTAGA+TGG | - | chr1.3:54661229-54661248 | None:intergenic | 20.0% |
!! | AACTTATATGAAAAACAGTT+TGG | - | chr1.3:54661803-54661822 | None:intergenic | 20.0% |
!! | AATAAAGGCTAAACTATAAA+AGG | - | chr1.3:54662254-54662273 | None:intergenic | 20.0% |
!! | AATTATATGTTATATAGCTC+AGG | + | chr1.3:54661106-54661125 | MS.gene85567:CDS | 20.0% |
!! | ATTATACGATACAAATTCAT+CGG | - | chr1.3:54661476-54661495 | None:intergenic | 20.0% |
!! | GTGCTTAGAAATTAAAATAA+AGG | - | chr1.3:54662269-54662288 | None:intergenic | 20.0% |
!! | GTTTAATTGCTTGTATTATT+AGG | + | chr1.3:54660288-54660307 | MS.gene85567:intron | 20.0% |
!! | TAAACAACCTTAATAGTTAT+AGG | - | chr1.3:54662498-54662517 | None:intergenic | 20.0% |
!! | TAACATATAATTATAAGAGG+TGG | - | chr1.3:54661098-54661117 | None:intergenic | 20.0% |
!! | TAACTATTAAGGTTGTTTAT+TGG | + | chr1.3:54662499-54662518 | MS.gene85567:intron | 20.0% |
!! | TATATTTCCATAAGTGTAAT+GGG | + | chr1.3:54661652-54661671 | MS.gene85567:intron | 20.0% |
!! | TTAATTGCTTGTATTATTAG+GGG | + | chr1.3:54660290-54660309 | MS.gene85567:intron | 20.0% |
!! | TTCAAATCTAAGTTATGTTT+CGG | + | chr1.3:54660747-54660766 | MS.gene85567:intron | 20.0% |
!!! | AAATTTTTATAATGTGTCTC+TGG | - | chr1.3:54662442-54662461 | None:intergenic | 20.0% |
!!! | AATAGTAGTTCTATTTCTAT+AGG | - | chr1.3:54660268-54660287 | None:intergenic | 20.0% |
!!! | ATAGTAGTTCTATTTCTATA+GGG | - | chr1.3:54660267-54660286 | None:intergenic | 20.0% |
!!! | CTAAGAATCTGAAATTTAAT+AGG | - | chr1.3:54660636-54660655 | None:intergenic | 20.0% |
!!! | GAAATTCATATAACTACTTT+TGG | - | chr1.3:54660710-54660729 | None:intergenic | 20.0% |
! | AAGAATATGATGACATCATT+AGG | + | chr1.3:54659877-54659896 | MS.gene85567:CDS | 25.0% |
! | AAGATACACCATACTATAAT+TGG | + | chr1.3:54661130-54661149 | MS.gene85567:CDS | 25.0% |
! | ACCTATTAAATTTCAGATTC+TGG | + | chr1.3:54660608-54660627 | MS.gene85567:intron | 25.0% |
! | AGATATGATTCAATATCTGA+AGG | + | chr1.3:54661067-54661086 | MS.gene85567:CDS | 25.0% |
! | ATAAAACATAAGATCAGAAG+TGG | + | chr1.3:54659906-54659925 | MS.gene85567:CDS | 25.0% |
! | GAAAAAACTTAAACATTCCA+TGG | + | chr1.3:54660096-54660115 | MS.gene85567:CDS | 25.0% |
! | GTATATTTCCATAAGTGTAA+TGG | + | chr1.3:54661651-54661670 | MS.gene85567:intron | 25.0% |
! | TACATGGTATTATATTCCAA+AGG | - | chr1.3:54661157-54661176 | None:intergenic | 25.0% |
! | TGAAATGTTGGAATTATGTT+TGG | - | chr1.3:54660831-54660850 | None:intergenic | 25.0% |
! | TTGTATCGTATAATTCTAGA+TGG | + | chr1.3:54661482-54661501 | MS.gene85567:CDS | 25.0% |
!! | ACCAGAATCTGAAATTTAAT+AGG | - | chr1.3:54660612-54660631 | None:intergenic | 25.0% |
!! | AGTGTCTATATTTGAAATGT+TGG | - | chr1.3:54660843-54660862 | None:intergenic | 25.0% |
!! | ATTAAGTTGTTTATCCAAAC+AGG | - | chr1.3:54661714-54661733 | None:intergenic | 25.0% |
!! | TTGTAAACGTTTCTAAAGAA+CGG | - | chr1.3:54662013-54662032 | None:intergenic | 25.0% |
!!! | GGAATGTTTAAGTTTTTTCT+TGG | - | chr1.3:54660095-54660114 | None:intergenic | 25.0% |
!!! | TTAAGTTTTTTCTTGGCAAA+GGG | - | chr1.3:54660088-54660107 | None:intergenic | 25.0% |
!!! | TTTAAGTTTTTTCTTGGCAA+AGG | - | chr1.3:54660089-54660108 | None:intergenic | 25.0% |
!!! | TTTTCAGGTACATTTATCTT+TGG | + | chr1.3:54660961-54660980 | MS.gene85567:intron | 25.0% |
AAATCCAAACACGAACAAAT+AGG | + | chr1.3:54660868-54660887 | MS.gene85567:intron | 30.0% | |
AATTTCTAAGCACGATTCAA+TGG | + | chr1.3:54662276-54662295 | MS.gene85567:intron | 30.0% | |
ATATGATGTTTACCTTCTTC+CGG | + | chr1.3:54661318-54661337 | MS.gene85567:CDS | 30.0% | |
ATCACCAATAGTTATATGGA+CGG | - | chr1.3:54662376-54662395 | None:intergenic | 30.0% | |
ATCTGTCCCTATAACTATTA+AGG | + | chr1.3:54662488-54662507 | MS.gene85567:intron | 30.0% | |
CAACAATGATGTAAGAATAC+AGG | - | chr1.3:54662536-54662555 | None:intergenic | 30.0% | |
CATTTAAATGTGTGTTAGCT+GGG | - | chr1.3:54660414-54660433 | None:intergenic | 30.0% | |
GATATTGAATCATATCTACC+AGG | - | chr1.3:54661064-54661083 | None:intergenic | 30.0% | |
GTAATTGGAAATTTAGATGG+AGG | - | chr1.3:54661226-54661245 | None:intergenic | 30.0% | |
GTTCCATATTCTACAAATGA+AGG | - | chr1.3:54661037-54661056 | None:intergenic | 30.0% | |
TCACCTTCATTTGTAGAATA+TGG | + | chr1.3:54661031-54661050 | MS.gene85567:CDS | 30.0% | |
TCATATAAGTGCTTATGTGT+GGG | + | chr1.3:54661755-54661774 | MS.gene85567:intron | 30.0% | |
TCATTTAAATGTGTGTTAGC+TGG | - | chr1.3:54660415-54660434 | None:intergenic | 30.0% | |
TGATTGTATGCAACATCTTT+GGG | + | chr1.3:54661357-54661376 | MS.gene85567:CDS | 30.0% | |
TTAGACTACAAAATTCTGAG+TGG | + | chr1.3:54660652-54660671 | MS.gene85567:intron | 30.0% | |
TTTCTTCATTTCTCATCTAC+AGG | + | chr1.3:54662035-54662054 | MS.gene85567:intron | 30.0% | |
! | AAGAATGAATTTGAGTTCCA+TGG | - | chr1.3:54660000-54660019 | None:intergenic | 30.0% |
! | ACAAATTCATCGGTTAACAA+TGG | - | chr1.3:54661466-54661485 | None:intergenic | 30.0% |
! | TATTATTCTTTTGCAGTTGC+AGG | + | chr1.3:54661544-54661563 | MS.gene85567:CDS | 30.0% |
! | TGATAATGACGAGTCAATTA+AGG | + | chr1.3:54662671-54662690 | MS.gene85567:CDS | 30.0% |
!! | AATGGAAATTTGGTCTTAAG+TGG | + | chr1.3:54662294-54662313 | MS.gene85567:intron | 30.0% |
!! | ACCATGTATTTTTATCGATG+TGG | + | chr1.3:54661169-54661188 | MS.gene85567:CDS | 30.0% |
!! | ATGTATTTTTATCGATGTGG+CGG | + | chr1.3:54661172-54661191 | MS.gene85567:CDS | 30.0% |
!! | ATTTCCAATTACTTTTGCTG+TGG | + | chr1.3:54661234-54661253 | MS.gene85567:CDS | 30.0% |
!! | CTTACATCATTGTTGTTTAC+AGG | + | chr1.3:54662541-54662560 | MS.gene85567:CDS | 30.0% |
!!! | TGACAGAGTTTTGATTTTTC+AGG | + | chr1.3:54660946-54660965 | MS.gene85567:intron | 30.0% |
AACAGAAGGAAATCATGAAG+AGG | + | chr1.3:54661432-54661451 | MS.gene85567:CDS | 35.0% | |
AACATATTGATCAGCAGTGA+CGG | - | chr1.3:54660063-54660082 | None:intergenic | 35.0% | |
AACCTTTAGCACATGTATGA+TGG | - | chr1.3:54661680-54661699 | None:intergenic | 35.0% | |
AAGCTAACTTGAAGAGCTTA+TGG | + | chr1.3:54661838-54661857 | MS.gene85567:intron | 35.0% | |
AAGTTGGGTATAACAGTAAC+TGG | - | chr1.3:54659966-54659985 | None:intergenic | 35.0% | |
AATGCCTATTTGTTCGTGTT+TGG | - | chr1.3:54660875-54660894 | None:intergenic | 35.0% | |
AATGGAAGATTAGATCCTTG+TGG | + | chr1.3:54662348-54662367 | MS.gene85567:CDS | 35.0% | |
ACACGAACAAATAGGCATTA+TGG | + | chr1.3:54660876-54660895 | MS.gene85567:intron | 35.0% | |
ACATATATCCACAACCAAAG+TGG | + | chr1.3:54662565-54662584 | MS.gene85567:CDS | 35.0% | |
AGACTGTTTGGTAGAGTTTA+TGG | - | chr1.3:54661904-54661923 | None:intergenic | 35.0% | |
AGAGGTTATCCAGATATCAT+CGG | - | chr1.3:54662697-54662716 | None:intergenic | 35.0% | |
AGCACGATTCAATGGAAATT+TGG | + | chr1.3:54662284-54662303 | MS.gene85567:intron | 35.0% | |
ATAAGAACAAACATGAGCTC+AGG | + | chr1.3:54662739-54662758 | MS.gene85567:CDS | 35.0% | |
ATCCATCATACATGTGCTAA+AGG | + | chr1.3:54661675-54661694 | MS.gene85567:intron | 35.0% | |
ATGTGCTAAAGGTTTAGACT+AGG | + | chr1.3:54661686-54661705 | MS.gene85567:intron | 35.0% | |
ATGTTTGTCATCAGTTATCC+AGG | - | chr1.3:54661011-54661030 | None:intergenic | 35.0% | |
CACATAAGCACTTATATGAC+AGG | - | chr1.3:54661754-54661773 | None:intergenic | 35.0% | |
CACCATCACCAATAGTTATA+TGG | - | chr1.3:54662380-54662399 | None:intergenic | 35.0% | |
CACGAACAAATAGGCATTAT+GGG | + | chr1.3:54660877-54660896 | MS.gene85567:intron | 35.0% | |
CCAAAGGTCCAATTATAGTA+TGG | - | chr1.3:54661141-54661160 | None:intergenic | 35.0% | |
CCATACTATAATTGGACCTT+TGG | + | chr1.3:54661138-54661157 | MS.gene85567:CDS | 35.0% | |
CTCAAATAAGTCAACCCAAA+CGG | + | chr1.3:54661950-54661969 | MS.gene85567:intron | 35.0% | |
CTGATTGTATGCAACATCTT+TGG | + | chr1.3:54661356-54661375 | MS.gene85567:CDS | 35.0% | |
GCCACATCGATAAAAATACA+TGG | - | chr1.3:54661173-54661192 | None:intergenic | 35.0% | |
GTAGAATATGGAACATTACC+TGG | + | chr1.3:54661043-54661062 | MS.gene85567:CDS | 35.0% | |
GTCATATAAGTGCTTATGTG+TGG | + | chr1.3:54661754-54661773 | MS.gene85567:intron | 35.0% | |
GTCCATATAACTATTGGTGA+TGG | + | chr1.3:54662375-54662394 | MS.gene85567:CDS | 35.0% | |
GTGTTCATGTTATCATGCTA+GGG | + | chr1.3:54661566-54661585 | MS.gene85567:CDS | 35.0% | |
TAAACACTAGTGAGACTGTT+TGG | - | chr1.3:54661916-54661935 | None:intergenic | 35.0% | |
TATGATGTTTACCTTCTTCC+GGG | + | chr1.3:54661319-54661338 | MS.gene85567:CDS | 35.0% | |
TCAAATAAGTCAACCCAAAC+GGG | + | chr1.3:54661951-54661970 | MS.gene85567:intron | 35.0% | |
TGATATCTGGATAACCTCTT+TGG | + | chr1.3:54662698-54662717 | MS.gene85567:CDS | 35.0% | |
TGGTTGGACTAAATCAACAT+TGG | + | chr1.3:54661276-54661295 | MS.gene85567:CDS | 35.0% | |
TGTGCTAAAGGTTTAGACTA+GGG | + | chr1.3:54661687-54661706 | MS.gene85567:intron | 35.0% | |
TGTTCATGCTTATGAACGTT+CGG | + | chr1.3:54662224-54662243 | MS.gene85567:CDS | 35.0% | |
TTCTGTACATCTAAGCAGAA+TGG | + | chr1.3:54660905-54660924 | MS.gene85567:intron | 35.0% | |
TTGTTATCAAATGCCCGTTT+GGG | - | chr1.3:54661967-54661986 | None:intergenic | 35.0% | |
! | ATGGTGATGTTGTCAAAGTT+GGG | - | chr1.3:54659981-54660000 | None:intergenic | 35.0% |
! | GCCTTGTTACTATTATACCA+CGG | - | chr1.3:54662120-54662139 | None:intergenic | 35.0% |
! | TTTGTTATCAAATGCCCGTT+TGG | - | chr1.3:54661968-54661987 | None:intergenic | 35.0% |
!! | CATATAACTATTGGTGATGG+TGG | + | chr1.3:54662378-54662397 | MS.gene85567:CDS | 35.0% |
AAAGAGAGTTTGACCTGTTG+AGG | - | chr1.3:54660149-54660168 | None:intergenic | 40.0% | |
AAGAGAGTTTGACCTGTTGA+GGG | - | chr1.3:54660148-54660167 | None:intergenic | 40.0% | |
AATAGTAACAAGGCTCACCA+AGG | + | chr1.3:54662126-54662145 | MS.gene85567:CDS | 40.0% | |
AATTCTGACCACTTTGGTTG+TGG | - | chr1.3:54662576-54662595 | None:intergenic | 40.0% | |
ACAGACACATGAGAATAACC+TGG | + | chr1.3:54660990-54661009 | MS.gene85567:CDS | 40.0% | |
ACTTAAACATTCCATGGCCA+TGG | + | chr1.3:54660102-54660121 | MS.gene85567:CDS | 40.0% | |
AGAGCAATACAGATGGCTAA+AGG | + | chr1.3:54661615-54661634 | MS.gene85567:CDS | 40.0% | |
AGCAAGAACTAAATCAACGC+TGG | - | chr1.3:54662199-54662218 | None:intergenic | 40.0% | |
AGTACTCAGAGCAATACAGA+TGG | + | chr1.3:54661608-54661627 | MS.gene85567:CDS | 40.0% | |
ATAACCTCTTTGGTAAGCTC+AGG | + | chr1.3:54662708-54662727 | MS.gene85567:CDS | 40.0% | |
CAACTTTGACAACATCACCA+TGG | + | chr1.3:54659980-54659999 | MS.gene85567:CDS | 40.0% | |
CAATTAAGGCCGATGATATC+TGG | + | chr1.3:54662685-54662704 | MS.gene85567:CDS | 40.0% | |
CAGGTACATTTATCTTTGGC+AGG | + | chr1.3:54660965-54660984 | MS.gene85567:intron | 40.0% | |
CTTAAACATTCCATGGCCAT+GGG | + | chr1.3:54660103-54660122 | MS.gene85567:CDS | 40.0% | |
GATGGATCCCATTACACTTA+TGG | - | chr1.3:54661662-54661681 | None:intergenic | 40.0% | |
GCCGTGGTATAATAGTAACA+AGG | + | chr1.3:54662116-54662135 | MS.gene85567:CDS | 40.0% | |
GGATGATATGATGACAGTCA+TGG | + | chr1.3:54662155-54662174 | MS.gene85567:CDS | 40.0% | |
GGTGTTCATGTTATCATGCT+AGG | + | chr1.3:54661565-54661584 | MS.gene85567:CDS | 40.0% | |
GTATAACAGTAACTGGTGGA+AGG | - | chr1.3:54659959-54659978 | None:intergenic | 40.0% | |
GTTGATCCACTTTCCTCAAA+CGG | - | chr1.3:54661514-54661533 | None:intergenic | 40.0% | |
TAAACTCAACTCATGCCTTC+TGG | + | chr1.3:54662634-54662653 | MS.gene85567:CDS | 40.0% | |
TCAGCATATGAAAGATCACC+CGG | - | chr1.3:54661340-54661359 | None:intergenic | 40.0% | |
TCTAAGCAGAATGGTTGTCT+TGG | + | chr1.3:54660914-54660933 | MS.gene85567:intron | 40.0% | |
TCTACAGGAAGATCTGTCAA+AGG | + | chr1.3:54662050-54662069 | MS.gene85567:intron | 40.0% | |
TGAAATAACACAAGCAGCCA+AGG | - | chr1.3:54662093-54662112 | None:intergenic | 40.0% | |
TGACAGAAACGCGTGTATAA+TGG | + | chr1.3:54662330-54662349 | MS.gene85567:intron | 40.0% | |
TTGGGTATAACAGTAACTGG+TGG | - | chr1.3:54659963-54659982 | None:intergenic | 40.0% | |
TTTCCTTCTGTTACCATCCA+CGG | - | chr1.3:54661424-54661443 | None:intergenic | 40.0% | |
! | AAAATGCCGTTTGAGGAAAG+TGG | + | chr1.3:54661505-54661524 | MS.gene85567:CDS | 40.0% |
! | AGAATGGTTGTCTTGGTTTG+AGG | + | chr1.3:54660921-54660940 | MS.gene85567:intron | 40.0% |
! | CATGGTGATGTTGTCAAAGT+TGG | - | chr1.3:54659982-54660001 | None:intergenic | 40.0% |
! | CGGGCATTTGATAACAAACA+TGG | + | chr1.3:54661970-54661989 | MS.gene85567:intron | 40.0% |
! | TAGATGGAAAATGCCGTTTG+AGG | + | chr1.3:54661498-54661517 | MS.gene85567:CDS | 40.0% |
!! | AGCGTTGATTTAGTTCTTGC+TGG | + | chr1.3:54662198-54662217 | MS.gene85567:CDS | 40.0% |
!!! | AGGAGTTTTGAGCTTGAACT+CGG | - | chr1.3:54661206-54661225 | None:intergenic | 40.0% |
AACAGTAACTGGTGGAAGGA+AGG | - | chr1.3:54659955-54659974 | None:intergenic | 45.0% | |
AAGATCTGTCAAAGGTGGAC+AGG | + | chr1.3:54662058-54662077 | MS.gene85567:CDS | 45.0% | |
ACAGGAAGATCTGTCAAAGG+TGG | + | chr1.3:54662053-54662072 | MS.gene85567:intron | 45.0% | |
AGTTTGACCTGTTGAGGGTA+AGG | - | chr1.3:54660143-54660162 | None:intergenic | 45.0% | |
ATGAAAGATCACCCGGAAGA+AGG | - | chr1.3:54661333-54661352 | None:intergenic | 45.0% | |
ATTCCTATGCCAACTCCAGA+AGG | - | chr1.3:54662652-54662671 | None:intergenic | 45.0% | |
CCAGCCACAGCAAAAGTAAT+TGG | - | chr1.3:54661241-54661260 | None:intergenic | 45.0% | |
GGCACCGTCCATATAACTAT+TGG | + | chr1.3:54662369-54662388 | MS.gene85567:CDS | 45.0% | |
GTTTAGACTAGGGTCCTGTT+TGG | + | chr1.3:54661697-54661716 | MS.gene85567:intron | 45.0% | |
TCACGGAATTCTGACCACTT+TGG | - | chr1.3:54662582-54662601 | None:intergenic | 45.0% | |
TGTCAAAGGTGGACAGGAAA+AGG | + | chr1.3:54662064-54662083 | MS.gene85567:CDS | 45.0% | |
! | CATGACCAAAACTGGCTTCA+CGG | - | chr1.3:54662599-54662618 | None:intergenic | 45.0% |
! | GAATTCCGTGAAGCCAGTTT+TGG | + | chr1.3:54662591-54662610 | MS.gene85567:CDS | 45.0% |
! | GATTTAGAATCCCATGGCCA+TGG | - | chr1.3:54660116-54660135 | None:intergenic | 45.0% |
! | GGTTGGGATTTAGAATCCCA+TGG | - | chr1.3:54660122-54660141 | None:intergenic | 45.0% |
!! | ATCTTTGGGACTCGTTTGGT+AGG | + | chr1.3:54661371-54661390 | MS.gene85567:CDS | 45.0% |
!! | CAACATCTTTGGGACTCGTT+TGG | + | chr1.3:54661367-54661386 | MS.gene85567:CDS | 45.0% |
!! | CCAATTACTTTTGCTGTGGC+TGG | + | chr1.3:54661238-54661257 | MS.gene85567:CDS | 45.0% |
!! | TTGTGTTATTTCACGTGCCG+TGG | + | chr1.3:54662100-54662119 | MS.gene85567:CDS | 45.0% |
!!! | GGAGTTTTGAGCTTGAACTC+GGG | - | chr1.3:54661205-54661224 | None:intergenic | 45.0% |
!!! | TTTTATCGATGTGGCGGACA+AGG | + | chr1.3:54661178-54661197 | MS.gene85567:CDS | 45.0% |
!!! | TTAAAAAAGTAATTTTTTTA+AGG | - | chr1.3:54660385-54660404 | None:intergenic | 5.0% |
AACTGGTGGAAGGAAGGAAG+AGG | - | chr1.3:54659949-54659968 | None:intergenic | 50.0% | |
ACCGAGAAGGCTTAGCTCAT+AGG | + | chr1.3:54662403-54662422 | MS.gene85567:CDS | 50.0% | |
ACGCTGGCAGCATAAAGCAA+TGG | - | chr1.3:54662183-54662202 | None:intergenic | 50.0% | |
ATCCCAACCTTACCCTCAAC+AGG | + | chr1.3:54660133-54660152 | MS.gene85567:CDS | 50.0% | |
CAGCTCACCATGACCAAAAC+TGG | - | chr1.3:54662607-54662626 | None:intergenic | 50.0% | |
GACCTGTTGAGGGTAAGGTT+GGG | - | chr1.3:54660138-54660157 | None:intergenic | 50.0% | |
GCATCCTGAGCTTACCAAAG+AGG | - | chr1.3:54662715-54662734 | None:intergenic | 50.0% | |
GCCTATGAGCTAAGCCTTCT+CGG | - | chr1.3:54662407-54662426 | None:intergenic | 50.0% | |
GCGATCTTGGTCAAACTGGT+TGG | + | chr1.3:54661260-54661279 | MS.gene85567:CDS | 50.0% | |
TGACCTGTTGAGGGTAAGGT+TGG | - | chr1.3:54660139-54660158 | None:intergenic | 50.0% | |
TGGACAGGAAAAGGACACCT+TGG | + | chr1.3:54662073-54662092 | MS.gene85567:CDS | 50.0% | |
!! | ATGCCTTCTGGAGTTGGCAT+AGG | + | chr1.3:54662646-54662665 | MS.gene85567:CDS | 50.0% |
!! | CAACTCATGCCTTCTGGAGT+TGG | + | chr1.3:54662640-54662659 | MS.gene85567:CDS | 50.0% |
!! | CGTGAAGCCAGTTTTGGTCA+TGG | + | chr1.3:54662597-54662616 | MS.gene85567:CDS | 50.0% |
!! | GTTATATGGACGGTGCCACA+AGG | - | chr1.3:54662366-54662385 | None:intergenic | 50.0% |
AGGCCGTGGATGGTAACAGA+AGG | + | chr1.3:54661418-54661437 | MS.gene85567:CDS | 55.0% | |
CACGGCCTTGCACTAGCAAA+CGG | - | chr1.3:54661406-54661425 | None:intergenic | 55.0% | |
GCTGGCGATCTTGGTCAAAC+TGG | + | chr1.3:54661256-54661275 | MS.gene85567:CDS | 55.0% | |
GGACTCGTTTGGTAGGCTTG+TGG | + | chr1.3:54661378-54661397 | MS.gene85567:CDS | 55.0% | |
TCATATCATCCCCTGCGCCT+TGG | - | chr1.3:54662146-54662165 | None:intergenic | 55.0% | |
! | TGGAGCCGTTTGCTAGTGCA+AGG | + | chr1.3:54661398-54661417 | MS.gene85567:CDS | 55.0% |
! | TTTGCTGTGGCTGGCGATCT+TGG | + | chr1.3:54661247-54661266 | MS.gene85567:CDS | 55.0% |
!! | GGTGATGGTGGAAACCGAGA+AGG | + | chr1.3:54662390-54662409 | MS.gene85567:CDS | 55.0% |
AACAAGGCTCACCAAGGCGC+AGG | + | chr1.3:54662132-54662151 | MS.gene85567:CDS | 60.0% | |
ACAAGGCTCACCAAGGCGCA+GGG | + | chr1.3:54662133-54662152 | MS.gene85567:CDS | 60.0% | |
TGCTAGTGCAAGGCCGTGGA+TGG | + | chr1.3:54661408-54661427 | MS.gene85567:CDS | 60.0% | |
! | CGTTTGCTAGTGCAAGGCCG+TGG | + | chr1.3:54661404-54661423 | MS.gene85567:CDS | 60.0% |
CAAGGCTCACCAAGGCGCAG+GGG | + | chr1.3:54662134-54662153 | MS.gene85567:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 54659870 | 54662782 | 54659870 | ID=MS.gene85567 |
chr1.3 | mRNA | 54659870 | 54662782 | 54659870 | ID=MS.gene85567.t1;Parent=MS.gene85567 |
chr1.3 | exon | 54659870 | 54660154 | 54659870 | ID=MS.gene85567.t1.exon1;Parent=MS.gene85567.t1 |
chr1.3 | CDS | 54659870 | 54660154 | 54659870 | ID=cds.MS.gene85567.t1;Parent=MS.gene85567.t1 |
chr1.3 | exon | 54660968 | 54661636 | 54660968 | ID=MS.gene85567.t1.exon2;Parent=MS.gene85567.t1 |
chr1.3 | CDS | 54660968 | 54661636 | 54660968 | ID=cds.MS.gene85567.t1;Parent=MS.gene85567.t1 |
chr1.3 | exon | 54662057 | 54662245 | 54662057 | ID=MS.gene85567.t1.exon3;Parent=MS.gene85567.t1 |
chr1.3 | CDS | 54662057 | 54662245 | 54662057 | ID=cds.MS.gene85567.t1;Parent=MS.gene85567.t1 |
chr1.3 | exon | 54662336 | 54662428 | 54662336 | ID=MS.gene85567.t1.exon4;Parent=MS.gene85567.t1 |
chr1.3 | CDS | 54662336 | 54662428 | 54662336 | ID=cds.MS.gene85567.t1;Parent=MS.gene85567.t1 |
chr1.3 | exon | 54662510 | 54662782 | 54662510 | ID=MS.gene85567.t1.exon5;Parent=MS.gene85567.t1 |
chr1.3 | CDS | 54662510 | 54662782 | 54662510 | ID=cds.MS.gene85567.t1;Parent=MS.gene85567.t1 |
Gene Sequence |
Protein sequence |