Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85580.t1 | XP_013468755.1 | 95.7 | 857 | 33 | 3 | 1 | 855 | 1 | 855 | 0.00E+00 | 1602.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85580.t1 | Q940Y9 | 66.0 | 751 | 237 | 7 | 106 | 855 | 84 | 817 | 5.5e-278 | 958.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85580.t1 | A0A072VLT4 | 95.7 | 857 | 33 | 3 | 1 | 855 | 1 | 855 | 0.0e+00 | 1602.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049794 | MS.gene85580 | 0.804114 | 2.52E-49 | -1.69E-46 |
| MS.gene050926 | MS.gene85580 | -0.81736 | 3.43E-52 | -1.69E-46 |
| MS.gene053318 | MS.gene85580 | 0.809707 | 1.66E-50 | -1.69E-46 |
| MS.gene054435 | MS.gene85580 | -0.813584 | 2.38E-51 | -1.69E-46 |
| MS.gene054447 | MS.gene85580 | -0.811122 | 8.20E-51 | -1.69E-46 |
| MS.gene055909 | MS.gene85580 | 0.815036 | 1.14E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene85580 | 0.81981 | 9.55E-53 | -1.69E-46 |
| MS.gene056346 | MS.gene85580 | 0.837412 | 5.28E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85580.t1 | MTR_1g076330 | 95.683 | 857 | 33 | 3 | 1 | 855 | 1 | 855 | 0.0 | 1652 |
| MS.gene85580.t1 | MTR_1g076330 | 94.166 | 857 | 30 | 4 | 1 | 855 | 1 | 839 | 0.0 | 1641 |
| MS.gene85580.t1 | MTR_1g076330 | 98.016 | 756 | 14 | 1 | 101 | 855 | 6 | 761 | 0.0 | 1516 |
| MS.gene85580.t1 | MTR_1g076330 | 94.830 | 793 | 37 | 3 | 1 | 791 | 1 | 791 | 0.0 | 1516 |
| MS.gene85580.t1 | MTR_1g076330 | 94.993 | 759 | 35 | 2 | 34 | 791 | 14 | 770 | 0.0 | 1477 |
| MS.gene85580.t1 | MTR_1g076330 | 94.184 | 705 | 37 | 3 | 1 | 703 | 1 | 703 | 0.0 | 1341 |
| MS.gene85580.t1 | MTR_1g076330 | 94.337 | 671 | 35 | 2 | 34 | 703 | 14 | 682 | 0.0 | 1301 |
| MS.gene85580.t1 | MTR_7g117580 | 25.547 | 685 | 417 | 18 | 200 | 848 | 197 | 824 | 1.83e-51 | 194 |
| MS.gene85580.t1 | MTR_2g005870 | 24.320 | 699 | 444 | 16 | 182 | 848 | 237 | 882 | 3.87e-49 | 187 |
| MS.gene85580.t1 | MTR_7g117580 | 25.038 | 651 | 389 | 18 | 238 | 848 | 9 | 600 | 6.88e-44 | 169 |
| MS.gene85580.t1 | MTR_2g005870 | 23.760 | 484 | 314 | 9 | 182 | 657 | 237 | 673 | 1.24e-35 | 145 |
| MS.gene85580.t1 | MTR_7g117580 | 24.625 | 467 | 300 | 10 | 200 | 659 | 197 | 618 | 7.26e-35 | 142 |
| MS.gene85580.t1 | MTR_7g117580 | 25.872 | 344 | 239 | 6 | 200 | 538 | 197 | 529 | 1.23e-31 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene85580.t1 | AT5G43745 | 67.168 | 731 | 228 | 6 | 129 | 855 | 95 | 817 | 0.0 | 1002 |
| MS.gene85580.t1 | AT5G02940 | 63.130 | 754 | 253 | 8 | 106 | 855 | 81 | 813 | 0.0 | 945 |
| MS.gene85580.t1 | AT5G02940 | 61.390 | 777 | 252 | 9 | 106 | 855 | 81 | 836 | 0.0 | 934 |
| MS.gene85580.t1 | AT5G49960 | 24.508 | 661 | 427 | 15 | 210 | 845 | 208 | 821 | 9.20e-48 | 183 |
| MS.gene85580.t1 | AT5G49960 | 24.009 | 454 | 293 | 9 | 210 | 657 | 208 | 615 | 2.06e-35 | 144 |
| MS.gene85580.t1 | AT5G49960 | 24.009 | 454 | 293 | 9 | 210 | 657 | 208 | 615 | 3.18e-35 | 143 |
Find 181 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCAAAATGGTTTCCTTTA+AGG | 0.073901 | 1.3:+54836367 | None:intergenic |
| TTTCTGAGAGAGCATATTTA+AGG | 0.151867 | 1.3:-54834444 | MS.gene85580:CDS |
| GTACCATGACTGAACAATTT+AGG | 0.174550 | 1.3:-54839791 | MS.gene85580:CDS |
| AGAAATTGTTGATTCAAAAT+TGG | 0.174597 | 1.3:-54835719 | MS.gene85580:CDS |
| CATTAAATGACAGGATTATT+AGG | 0.177184 | 1.3:-54836554 | MS.gene85580:CDS |
| CTAATAATCCTGTCATTTAA+TGG | 0.182682 | 1.3:+54836555 | None:intergenic |
| TCTGACAAAGATTGGCTTCT+TGG | 0.213550 | 1.3:-54836293 | MS.gene85580:CDS |
| ACACGTATTGAGCGTGTTAT+TGG | 0.217615 | 1.3:-54839861 | MS.gene85580:CDS |
| TTCCTCTGTCCAAATGAAAT+TGG | 0.236075 | 1.3:+54841516 | None:intergenic |
| AGAGCATTGAACAAATAATT+TGG | 0.238735 | 1.3:+54837990 | None:intergenic |
| TTGGCTTTGTTCTTGCAATA+TGG | 0.244797 | 1.3:-54839842 | MS.gene85580:CDS |
| TCTCTCCTTCTTTCATATAA+AGG | 0.245635 | 1.3:+54834485 | None:intergenic |
| CATGGACTACGGCACCTTAA+AGG | 0.272237 | 1.3:-54836381 | MS.gene85580:CDS |
| GAAATTGTTGATTCAAAATT+GGG | 0.277542 | 1.3:-54835718 | MS.gene85580:CDS |
| TGCAGAATTTCATCATCATT+TGG | 0.285455 | 1.3:+54837372 | None:intergenic |
| CTCATTCAATTCACTATTCT+CGG | 0.303502 | 1.3:+54835414 | None:intergenic |
| CTGTTGTATGTGGTCTTTAC+CGG | 0.310048 | 1.3:-54837416 | MS.gene85580:CDS |
| TGAAGTCTGAATATTCAAAA+TGG | 0.312714 | 1.3:+54836355 | None:intergenic |
| TACCATGACTGAACAATTTA+GGG | 0.322572 | 1.3:-54839790 | MS.gene85580:intron |
| CCTCGTTAGGTATTGTTCAT+TGG | 0.325696 | 1.3:-54837254 | MS.gene85580:intron |
| TGGCTTTGTTCTTGCAATAT+GGG | 0.327052 | 1.3:-54839841 | MS.gene85580:CDS |
| AGGGGTTCTGACTTTGGAAT+TGG | 0.327626 | 1.3:+54834289 | None:intergenic |
| CTTGCATATCTGACAAAGAT+TGG | 0.330744 | 1.3:-54836301 | MS.gene85580:CDS |
| GATATGCAAGCAATTGAAAA+AGG | 0.332048 | 1.3:+54836314 | None:intergenic |
| AGTAAAAGAATGCATTCTTT+TGG | 0.333418 | 1.3:+54836946 | None:intergenic |
| CCTTCAACCAATTCCAGATA+TGG | 0.337852 | 1.3:-54838206 | MS.gene85580:CDS |
| CTTCAACAAGTCACAAGTTT+GGG | 0.338705 | 1.3:+54838056 | None:intergenic |
| ACTTCAACAAGTCACAAGTT+TGG | 0.343518 | 1.3:+54838055 | None:intergenic |
| GCAGAATTTCATCATCATTT+GGG | 0.346170 | 1.3:+54837373 | None:intergenic |
| ATTAAATGACAGGATTATTA+GGG | 0.346750 | 1.3:-54836553 | MS.gene85580:CDS |
| TGCAGCTTGCCTGATCTTGA+AGG | 0.354653 | 1.3:-54837566 | MS.gene85580:CDS |
| ATGTTCACTATGTTCTGAAT+TGG | 0.356478 | 1.3:+54841558 | None:intergenic |
| CCACAAGTTATAACCACAAA+TGG | 0.365342 | 1.3:-54837209 | MS.gene85580:CDS |
| GGGGTTCTGACTTTGGAATT+GGG | 0.367709 | 1.3:+54834290 | None:intergenic |
| TCTCGGTCCTGGAAGTGTTT+TGG | 0.368444 | 1.3:-54836875 | MS.gene85580:intron |
| ATGTGAGCACCAATTTCATT+TGG | 0.382678 | 1.3:-54841525 | MS.gene85580:CDS |
| ATAGTGAATTGAATGAGGTT+TGG | 0.390785 | 1.3:-54835408 | MS.gene85580:CDS |
| AGAATGTTCGAGTTTCTCAT+AGG | 0.392413 | 1.3:-54836503 | MS.gene85580:CDS |
| CTTTAAGGTGCCGTAGTCCA+TGG | 0.393693 | 1.3:+54836382 | None:intergenic |
| AGAGAGAGGGGTTCTGACTT+TGG | 0.394255 | 1.3:+54834283 | None:intergenic |
| CTGACACATACAAAGTTTGT+TGG | 0.400547 | 1.3:-54841212 | MS.gene85580:CDS |
| AAACATACCAAAACACTTCC+AGG | 0.411264 | 1.3:+54836868 | None:intergenic |
| ATTGATATATGTAGGTTTCA+AGG | 0.414000 | 1.3:-54838080 | MS.gene85580:intron |
| ATAATTATACTGCCAGCAAA+AGG | 0.414426 | 1.3:-54839022 | MS.gene85580:CDS |
| TATGTGGTCTTTACCGGAAT+GGG | 0.416645 | 1.3:-54837410 | MS.gene85580:CDS |
| GAAAATATCTGCGACAAACT+TGG | 0.422042 | 1.3:-54836161 | MS.gene85580:CDS |
| AGCAGATAGCTTATCTGTCT+TGG | 0.425298 | 1.3:+54836202 | None:intergenic |
| ACCGATCATATCATTATTTG+TGG | 0.426209 | 1.3:-54839646 | MS.gene85580:CDS |
| TGACTTGTTGAAGTCAATCT+CGG | 0.428013 | 1.3:-54838046 | MS.gene85580:CDS |
| GACTCTTGACGGAACAAGCT+TGG | 0.428211 | 1.3:-54841144 | MS.gene85580:CDS |
| CCATTTGTGGTTATAACTTG+TGG | 0.429550 | 1.3:+54837209 | None:intergenic |
| TTCCAAGAAAACAGATTGAT+AGG | 0.432088 | 1.3:-54839420 | MS.gene85580:CDS |
| TTGGAAGATCAGACATAAGA+AGG | 0.434726 | 1.3:+54839437 | None:intergenic |
| TTGGATGCAACATCTTCTAC+TGG | 0.434987 | 1.3:+54838009 | None:intergenic |
| ACAGAATCCATATCTGGAAT+TGG | 0.435535 | 1.3:+54838199 | None:intergenic |
| CCACCAACAACAAGAATTCC+AGG | 0.436061 | 1.3:-54842331 | MS.gene85580:intron |
| TTGAATCATTTCTACAACAT+CGG | 0.436367 | 1.3:+54836912 | None:intergenic |
| GTTCTTCTTCACATAACCTA+TGG | 0.436383 | 1.3:+54834411 | None:intergenic |
| GACTTGTTGAAGTCAATCTC+GGG | 0.436914 | 1.3:-54838045 | MS.gene85580:CDS |
| CCTGGAATTCTTGTTGTTGG+TGG | 0.436987 | 1.3:+54842331 | None:intergenic |
| AAGTGGCTTAGGTGTATTCA+AGG | 0.445370 | 1.3:+54841100 | None:intergenic |
| ACGTCTAATTTAAGTGGCTT+AGG | 0.446496 | 1.3:+54841089 | None:intergenic |
| TGAATCATTTCTACAACATC+GGG | 0.447283 | 1.3:+54836913 | None:intergenic |
| ACTCTTGACGGAACAAGCTT+GGG | 0.447540 | 1.3:-54841143 | MS.gene85580:CDS |
| GTGGGGACAGAATCCATATC+TGG | 0.455922 | 1.3:+54838193 | None:intergenic |
| CGAATACCACGCCTGTGTAA+TGG | 0.458509 | 1.3:+54841808 | None:intergenic |
| GGAAAATAATAGTAGCTCTC+AGG | 0.460845 | 1.3:-54841497 | MS.gene85580:intron |
| TATTCAGACTTCATTGAAGA+AGG | 0.463327 | 1.3:-54836345 | MS.gene85580:CDS |
| TTTAAGGTGCCGTAGTCCAT+GGG | 0.463795 | 1.3:+54836383 | None:intergenic |
| CCATATCTGGAATTGGTTGA+AGG | 0.465053 | 1.3:+54838206 | None:intergenic |
| TTGTGCCCTGTCATATCAGC+TGG | 0.468222 | 1.3:-54841849 | MS.gene85580:CDS |
| AGAGTAATATGCAAAGGCTC+AGG | 0.468992 | 1.3:-54839696 | MS.gene85580:CDS |
| TATGTCATTCCTTCAAGATC+AGG | 0.471383 | 1.3:+54837557 | None:intergenic |
| TTATTTCAGGCTGTTGTATG+TGG | 0.479952 | 1.3:-54837426 | MS.gene85580:intron |
| GTACCTGGAATTCTTGTTGT+TGG | 0.483183 | 1.3:+54842328 | None:intergenic |
| TCAGAAAGCTCGGAAAATGA+TGG | 0.485822 | 1.3:+54834460 | None:intergenic |
| ATTAGCCTTTATATGAAAGA+AGG | 0.487807 | 1.3:-54834490 | MS.gene85580:CDS |
| GGCTTTGTTCTTGCAATATG+GGG | 0.488366 | 1.3:-54839840 | MS.gene85580:CDS |
| AATGACCTTGAGCAGTTACA+AGG | 0.490244 | 1.3:+54835536 | None:intergenic |
| TATGAGAACTATCTCGGTCC+TGG | 0.491562 | 1.3:-54836886 | MS.gene85580:CDS |
| CAGGAACAATAAACAATCAC+TGG | 0.493123 | 1.3:-54840058 | MS.gene85580:CDS |
| CGAGAATAGTGAATTGAATG+AGG | 0.494044 | 1.3:-54835413 | MS.gene85580:CDS |
| TTTAGCTGCTTTAATATGAA+AGG | 0.497921 | 1.3:+54839607 | None:intergenic |
| GTGGCTTATTAGTATTCTGA+AGG | 0.498207 | 1.3:+54837228 | None:intergenic |
| CAGAGACGCCATTAAATGAC+AGG | 0.499203 | 1.3:-54836563 | MS.gene85580:CDS |
| GACAAAGATTGGCTTCTTGG+AGG | 0.500058 | 1.3:-54836290 | MS.gene85580:intron |
| CCTGTCATATCAGCTGGCTC+AGG | 0.500403 | 1.3:-54841843 | MS.gene85580:CDS |
| TATTTCCTCCGCCGCAACAT+AGG | 0.501247 | 1.3:+54835564 | None:intergenic |
| ATTGATAGTCATATCTGAGC+TGG | 0.501789 | 1.3:-54834245 | MS.gene85580:CDS |
| TCTGAATTGGAATTAAAAGC+TGG | 0.502397 | 1.3:+54841571 | None:intergenic |
| TATGTGCCTCAGACTCTTGA+CGG | 0.505688 | 1.3:-54841155 | MS.gene85580:CDS |
| TAATTATACTGCCAGCAAAA+GGG | 0.507131 | 1.3:-54839021 | MS.gene85580:CDS |
| TAACAAACCTCAACTATTGT+GGG | 0.508090 | 1.3:+54838175 | None:intergenic |
| AAGGACTTATAAAGATCTAC+AGG | 0.509152 | 1.3:-54837960 | MS.gene85580:CDS |
| ACATGCACACCAGCCTTCCA+TGG | 0.510079 | 1.3:-54842388 | MS.gene85580:CDS |
| GTTTCTTGTTCTTCAAGCTA+AGG | 0.510347 | 1.3:-54840826 | MS.gene85580:intron |
| CCTGAGCCAGCTGATATGAC+AGG | 0.511177 | 1.3:+54841843 | None:intergenic |
| CATCTAATATCATGAAAAGA+AGG | 0.511608 | 1.3:+54841059 | None:intergenic |
| AATTATTTGTTCAATGCTCT+CGG | 0.514496 | 1.3:-54837987 | MS.gene85580:CDS |
| ATAACCACAAATGGGAAAGA+AGG | 0.514985 | 1.3:-54837200 | MS.gene85580:CDS |
| GTAACGCGTCCTAACAGATC+TGG | 0.516914 | 1.3:-54837095 | MS.gene85580:CDS |
| AAGGAGACGTCTAATTTAAG+TGG | 0.517014 | 1.3:+54841083 | None:intergenic |
| AGTGACCTATGTTGCGGCGG+AGG | 0.517374 | 1.3:-54835569 | MS.gene85580:CDS |
| CACAAGTTATAACCACAAAT+GGG | 0.517797 | 1.3:-54837208 | MS.gene85580:CDS |
| GCATGTGCTACAGGGTCGAC+AGG | 0.519355 | 1.3:-54841279 | MS.gene85580:intron |
| GTTCAATGCTCTCGGCAGAA+AGG | 0.520032 | 1.3:-54837979 | MS.gene85580:CDS |
| TTCTGTCCCCACAATAGTTG+AGG | 0.522166 | 1.3:-54838182 | MS.gene85580:intron |
| CCTTGGAATCCATGGAAGGC+TGG | 0.522336 | 1.3:+54842379 | None:intergenic |
| ATCTTGAAGGAATGACATAT+AGG | 0.524524 | 1.3:-54837553 | MS.gene85580:CDS |
| GCACATATCGAACTATTGCT+TGG | 0.525302 | 1.3:+54841171 | None:intergenic |
| GTCAGTCAATTCAAGAGAGA+GGG | 0.525834 | 1.3:+54834270 | None:intergenic |
| TCTTACTTTACTCAATTCGA+TGG | 0.529133 | 1.3:+54837130 | None:intergenic |
| CAGCATAATTACAAAATGAC+CGG | 0.533687 | 1.3:+54834211 | None:intergenic |
| AATGGGAAAGAAGGAAAAGA+TGG | 0.536238 | 1.3:-54837191 | MS.gene85580:CDS |
| AATTATACTGCCAGCAAAAG+GGG | 0.536630 | 1.3:-54839020 | MS.gene85580:CDS |
| CAAGAGTATGAGAACTATCT+CGG | 0.537222 | 1.3:-54836892 | MS.gene85580:CDS |
| TACCCTAAATTGTTCAGTCA+TGG | 0.537267 | 1.3:+54839788 | None:intergenic |
| CACGAGTTTGCTGTTCGCCT+AGG | 0.538803 | 1.3:-54839577 | MS.gene85580:CDS |
| TTGAGCCTTGTAACTGCTCA+AGG | 0.539272 | 1.3:-54835541 | MS.gene85580:intron |
| GTAACAAACCTCAACTATTG+TGG | 0.540000 | 1.3:+54838174 | None:intergenic |
| ATATGCTCTCTCAGAAAGCT+CGG | 0.542579 | 1.3:+54834450 | None:intergenic |
| ATCACCATTTAGGCAGCAGA+CGG | 0.544517 | 1.3:-54836979 | MS.gene85580:intron |
| CCGATCATATCATTATTTGT+GGG | 0.545928 | 1.3:-54839645 | MS.gene85580:CDS |
| GTGGAAGTGAGTGAGATTCA+TGG | 0.547458 | 1.3:+54842409 | None:intergenic |
| CATATCTGGAATTGGTTGAA+GGG | 0.547491 | 1.3:+54838207 | None:intergenic |
| CCAGCCTTCCATGGATTCCA+AGG | 0.548143 | 1.3:-54842379 | MS.gene85580:CDS |
| ATTATTAGGGAAAACATCGT+TGG | 0.550733 | 1.3:-54836540 | MS.gene85580:CDS |
| TGTGTGTGCCTTGGAATCCA+TGG | 0.553604 | 1.3:+54842371 | None:intergenic |
| GATGAGCAGTGTGTGTGCCT+TGG | 0.554805 | 1.3:+54842362 | None:intergenic |
| TACTGCCAGCAAAAGGGGAT+CGG | 0.554950 | 1.3:-54839015 | MS.gene85580:intron |
| ACCTTGGAACCAGATCTGTT+AGG | 0.555505 | 1.3:+54837086 | None:intergenic |
| ATGTAAACCCTGTAGGGAGA+TGG | 0.559911 | 1.3:-54841612 | MS.gene85580:intron |
| GTATGTGGTCTTTACCGGAA+TGG | 0.565150 | 1.3:-54837411 | MS.gene85580:CDS |
| CTGCGACAAACTTGGAGTCA+AGG | 0.565908 | 1.3:-54836153 | MS.gene85580:intron |
| TTAAGGAGAGAAGTAGCCAT+AGG | 0.566286 | 1.3:-54834427 | MS.gene85580:CDS |
| ATTGGAAACCCCATGGACTA+CGG | 0.567157 | 1.3:-54836392 | MS.gene85580:CDS |
| GAATGTTCGAGTTTCTCATA+GGG | 0.567985 | 1.3:-54836502 | MS.gene85580:intron |
| CACCAATTTCATTTGGACAG+AGG | 0.569663 | 1.3:-54841518 | MS.gene85580:CDS |
| GGGAGCACAAATGCAAGTCA+TGG | 0.570238 | 1.3:-54839671 | MS.gene85580:CDS |
| TAGGCAGCAGACGGGAATGT+AGG | 0.574180 | 1.3:-54836970 | MS.gene85580:CDS |
| TCACCATTTAGGCAGCAGAC+GGG | 0.585510 | 1.3:-54836978 | MS.gene85580:intron |
| TGAGCTGGAAGGTGAACAGC+CGG | 0.586773 | 1.3:-54834230 | MS.gene85580:CDS |
| CGCAACAGAGTAATATGCAA+AGG | 0.588880 | 1.3:-54839702 | MS.gene85580:intron |
| AAATTGTTGATTCAAAATTG+GGG | 0.589912 | 1.3:-54835717 | MS.gene85580:CDS |
| GAATTTCATCATCATTTGGG+TGG | 0.590474 | 1.3:+54837376 | None:intergenic |
| AATATCATGAAAAGAAGGCA+AGG | 0.592571 | 1.3:+54841064 | None:intergenic |
| TGCAACTCACCTTCAGTGTG+TGG | 0.593529 | 1.3:+54841784 | None:intergenic |
| TCCTAACAGATCTGGTTCCA+AGG | 0.594226 | 1.3:-54837087 | MS.gene85580:intron |
| GAGTAATATGCAAAGGCTCA+GGG | 0.597688 | 1.3:-54839695 | MS.gene85580:CDS |
| CCCACAAATAATGATATGAT+CGG | 0.599046 | 1.3:+54839645 | None:intergenic |
| AGTCAGTCAATTCAAGAGAG+AGG | 0.599157 | 1.3:+54834269 | None:intergenic |
| ACCTAGCTGAAGCAGTGCCT+AGG | 0.600093 | 1.3:+54839560 | None:intergenic |
| AGCGTCGATACCTCTTGCTA+AGG | 0.600603 | 1.3:+54839356 | None:intergenic |
| GCCGCAACATAGGTCACTGA+TGG | 0.603508 | 1.3:+54835574 | None:intergenic |
| CCACGCCTGTGTAATGGAGA+AGG | 0.603866 | 1.3:+54841814 | None:intergenic |
| GGGTGATGAAATATATGTGA+AGG | 0.604673 | 1.3:-54835365 | MS.gene85580:intron |
| GCCATCAGTGACCTATGTTG+CGG | 0.607641 | 1.3:-54835575 | MS.gene85580:CDS |
| TGGCTTATTAGTATTCTGAA+GGG | 0.612456 | 1.3:+54837229 | None:intergenic |
| CTTGTTCCGTCAAGAGTCTG+AGG | 0.618450 | 1.3:+54841149 | None:intergenic |
| GAAAGACATACTAGATGCAG+AGG | 0.618766 | 1.3:-54835386 | MS.gene85580:CDS |
| ATATTGATCTCCTTAGCAAG+AGG | 0.619450 | 1.3:-54839366 | MS.gene85580:intron |
| ATCAGTGACCTATGTTGCGG+CGG | 0.620787 | 1.3:-54835572 | MS.gene85580:CDS |
| AAACCCTGTAGGGAGATGGC+AGG | 0.622638 | 1.3:-54841608 | MS.gene85580:intron |
| ATGGAAGGCTGGTGTGCATG+TGG | 0.627121 | 1.3:+54842390 | None:intergenic |
| ACTATAGATTGGAAACCCCA+TGG | 0.633543 | 1.3:-54836399 | MS.gene85580:intron |
| CCTTCTCCATTACACAGGCG+TGG | 0.637605 | 1.3:-54841814 | MS.gene85580:CDS |
| TCAGTCAATTCAAGAGAGAG+GGG | 0.638151 | 1.3:+54834271 | None:intergenic |
| TGTGCCTTGGAATCCATGGA+AGG | 0.640391 | 1.3:+54842375 | None:intergenic |
| GGTATTCGACCACACACTGA+AGG | 0.641674 | 1.3:-54841793 | MS.gene85580:intron |
| CTTCACCTTCTCCATTACAC+AGG | 0.646584 | 1.3:-54841819 | MS.gene85580:CDS |
| CTGAGCCAGCTGATATGACA+GGG | 0.647653 | 1.3:+54841844 | None:intergenic |
| ATAGTCATATCTGAGCTGGA+AGG | 0.647720 | 1.3:-54834241 | MS.gene85580:CDS |
| ATAACACGCTCAATACGTGT+TGG | 0.648660 | 1.3:+54839864 | None:intergenic |
| GCCTAGGCACTGCTTCAGCT+AGG | 0.650589 | 1.3:-54839561 | MS.gene85580:intron |
| AACAAACCTCAACTATTGTG+GGG | 0.656942 | 1.3:+54838176 | None:intergenic |
| ATATTAGATGGAGCTTAGCG+CGG | 0.663174 | 1.3:-54841046 | MS.gene85580:CDS |
| AATATGCAAAGGCTCAGGGA+GGG | 0.673017 | 1.3:-54839691 | MS.gene85580:CDS |
| TAATATGCAAAGGCTCAGGG+AGG | 0.678347 | 1.3:-54839692 | MS.gene85580:CDS |
| TTAAGGTGCCGTAGTCCATG+GGG | 0.678704 | 1.3:+54836384 | None:intergenic |
| ACTTGTTGAAGTCAATCTCG+GGG | 0.695230 | 1.3:-54838044 | MS.gene85580:CDS |
| AAAGACATACTAGATGCAGA+GGG | 0.713150 | 1.3:-54835385 | MS.gene85580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 54834219 | 54842429 | 54834219 | ID=MS.gene85580 |
| chr1.3 | mRNA | 54834219 | 54842429 | 54834219 | ID=MS.gene85580.t1;Parent=MS.gene85580 |
| chr1.3 | exon | 54842332 | 54842429 | 54842332 | ID=MS.gene85580.t1.exon1;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54842332 | 54842429 | 54842332 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54841794 | 54841876 | 54841794 | ID=MS.gene85580.t1.exon2;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54841794 | 54841876 | 54841794 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54841498 | 54841619 | 54841498 | ID=MS.gene85580.t1.exon3;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54841498 | 54841619 | 54841498 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54841002 | 54841288 | 54841002 | ID=MS.gene85580.t1.exon4;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54841002 | 54841288 | 54841002 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54840827 | 54840898 | 54840827 | ID=MS.gene85580.t1.exon5;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54840827 | 54840898 | 54840827 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54840002 | 54840077 | 54840002 | ID=MS.gene85580.t1.exon6;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54840002 | 54840077 | 54840002 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54839791 | 54839889 | 54839791 | ID=MS.gene85580.t1.exon7;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54839791 | 54839889 | 54839791 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54839562 | 54839716 | 54839562 | ID=MS.gene85580.t1.exon8;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54839562 | 54839716 | 54839562 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54839367 | 54839471 | 54839367 | ID=MS.gene85580.t1.exon9;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54839367 | 54839471 | 54839367 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54839016 | 54839102 | 54839016 | ID=MS.gene85580.t1.exon10;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54839016 | 54839102 | 54839016 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54838183 | 54838267 | 54838183 | ID=MS.gene85580.t1.exon11;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54838183 | 54838267 | 54838183 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54837941 | 54838088 | 54837941 | ID=MS.gene85580.t1.exon12;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54837941 | 54838088 | 54837941 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54837529 | 54837605 | 54837529 | ID=MS.gene85580.t1.exon13;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54837529 | 54837605 | 54837529 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54837359 | 54837439 | 54837359 | ID=MS.gene85580.t1.exon14;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54837359 | 54837439 | 54837359 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54837088 | 54837267 | 54837088 | ID=MS.gene85580.t1.exon15;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54837088 | 54837267 | 54837088 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54836876 | 54836989 | 54836876 | ID=MS.gene85580.t1.exon16;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54836876 | 54836989 | 54836876 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54836503 | 54836595 | 54836503 | ID=MS.gene85580.t1.exon17;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54836503 | 54836595 | 54836503 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54836291 | 54836414 | 54836291 | ID=MS.gene85580.t1.exon18;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54836291 | 54836414 | 54836291 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54836154 | 54836230 | 54836154 | ID=MS.gene85580.t1.exon19;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54836154 | 54836230 | 54836154 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54835711 | 54835758 | 54835711 | ID=MS.gene85580.t1.exon20;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54835711 | 54835758 | 54835711 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54835542 | 54835611 | 54835542 | ID=MS.gene85580.t1.exon21;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54835542 | 54835611 | 54835542 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54835366 | 54835439 | 54835366 | ID=MS.gene85580.t1.exon22;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54835366 | 54835439 | 54835366 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54834405 | 54834515 | 54834405 | ID=MS.gene85580.t1.exon23;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54834405 | 54834515 | 54834405 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| chr1.3 | exon | 54834219 | 54834320 | 54834219 | ID=MS.gene85580.t1.exon24;Parent=MS.gene85580.t1 |
| chr1.3 | CDS | 54834219 | 54834320 | 54834219 | ID=cds.MS.gene85580.t1;Parent=MS.gene85580.t1 |
| Gene Sequence |
| Protein sequence |
