Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86330.t1 | RHN76864.1 | 60.3 | 343 | 110 | 10 | 1 | 328 | 14 | 345 | 6.90E-104 | 387.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86330.t1 | Q9LMP1 | 33.0 | 315 | 180 | 12 | 18 | 322 | 29 | 322 | 2.1e-37 | 157.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86330.t1 | A0A072VDZ8 | 60.3 | 343 | 110 | 10 | 1 | 328 | 14 | 345 | 5.0e-104 | 387.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052318 | MS.gene86330 | 0.832912 | 7.21E-56 | -1.69E-46 |
| MS.gene052501 | MS.gene86330 | 0.800773 | 1.23E-48 | -1.69E-46 |
| MS.gene052503 | MS.gene86330 | 0.804542 | 2.05E-49 | -1.69E-46 |
| MS.gene052589 | MS.gene86330 | 0.806854 | 6.72E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene86330 | 0.807324 | 5.34E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene86330 | 0.807978 | 3.88E-50 | -1.69E-46 |
| MS.gene053480 | MS.gene86330 | 0.81315 | 2.96E-51 | -1.69E-46 |
| MS.gene053873 | MS.gene86330 | 0.849813 | 2.54E-60 | -1.69E-46 |
| MS.gene054107 | MS.gene86330 | 0.829777 | 4.26E-55 | -1.69E-46 |
| MS.gene056514 | MS.gene86330 | 0.810714 | 1.00E-50 | -1.69E-46 |
| MS.gene057888 | MS.gene86330 | 0.800586 | 1.34E-48 | -1.69E-46 |
| MS.gene059303 | MS.gene86330 | 0.818494 | 1.90E-52 | -1.69E-46 |
| MS.gene060485 | MS.gene86330 | 0.860702 | 1.72E-63 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86330.t1 | MTR_1g010260 | 62.974 | 343 | 101 | 10 | 1 | 328 | 14 | 345 | 1.15e-137 | 409 |
| MS.gene86330.t1 | MTR_1g010240 | 53.916 | 332 | 101 | 11 | 10 | 328 | 27 | 319 | 2.89e-102 | 315 |
| MS.gene86330.t1 | MTR_1g010230 | 70.233 | 215 | 54 | 5 | 2 | 214 | 1 | 207 | 8.08e-94 | 281 |
| MS.gene86330.t1 | MTR_1g027580 | 46.154 | 325 | 154 | 9 | 1 | 318 | 20 | 330 | 1.01e-83 | 269 |
| MS.gene86330.t1 | MTR_1g027490 | 46.708 | 319 | 152 | 10 | 18 | 328 | 18 | 326 | 1.26e-82 | 266 |
| MS.gene86330.t1 | MTR_1g027570 | 44.214 | 337 | 166 | 9 | 1 | 327 | 15 | 339 | 2.99e-82 | 265 |
| MS.gene86330.t1 | MTR_1g027660 | 44.611 | 334 | 159 | 10 | 1 | 327 | 2 | 316 | 2.19e-81 | 263 |
| MS.gene86330.t1 | MTR_1g010220 | 44.160 | 351 | 165 | 14 | 2 | 328 | 9 | 352 | 1.91e-76 | 249 |
| MS.gene86330.t1 | MTR_1g027600 | 42.902 | 317 | 162 | 10 | 18 | 327 | 38 | 342 | 7.23e-73 | 241 |
| MS.gene86330.t1 | MTR_1g027640 | 40.120 | 334 | 183 | 10 | 1 | 327 | 21 | 344 | 6.28e-69 | 230 |
| MS.gene86330.t1 | MTR_1g010250 | 41.319 | 288 | 147 | 13 | 1 | 271 | 16 | 298 | 6.04e-56 | 193 |
| MS.gene86330.t1 | MTR_2g009670 | 34.675 | 323 | 172 | 15 | 18 | 316 | 33 | 340 | 1.70e-39 | 149 |
| MS.gene86330.t1 | MTR_3g088775 | 34.472 | 322 | 171 | 16 | 18 | 316 | 53 | 357 | 2.24e-38 | 145 |
| MS.gene86330.t1 | MTR_3g088780 | 33.234 | 334 | 190 | 14 | 1 | 312 | 12 | 334 | 1.28e-36 | 141 |
| MS.gene86330.t1 | MTR_3g088750 | 31.563 | 339 | 198 | 11 | 1 | 316 | 8 | 335 | 1.44e-34 | 135 |
| MS.gene86330.t1 | MTR_3g088760 | 33.538 | 325 | 165 | 16 | 18 | 312 | 27 | 330 | 5.27e-33 | 130 |
| MS.gene86330.t1 | MTR_3g088785 | 33.025 | 324 | 178 | 16 | 18 | 319 | 30 | 336 | 2.96e-32 | 128 |
| MS.gene86330.t1 | MTR_3g088755 | 30.682 | 352 | 190 | 16 | 1 | 319 | 11 | 341 | 1.45e-31 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86330.t1 | AT1G21270 | 33.553 | 304 | 173 | 11 | 18 | 311 | 29 | 313 | 7.93e-40 | 150 |
| MS.gene86330.t1 | AT1G21240 | 31.761 | 318 | 167 | 10 | 18 | 308 | 31 | 325 | 7.55e-35 | 135 |
| MS.gene86330.t1 | AT1G21230 | 33.557 | 298 | 170 | 12 | 18 | 305 | 29 | 308 | 1.22e-32 | 129 |
| MS.gene86330.t1 | AT1G21250 | 30.128 | 312 | 182 | 13 | 18 | 313 | 32 | 323 | 9.68e-30 | 120 |
| MS.gene86330.t1 | AT1G21210 | 29.688 | 320 | 174 | 13 | 18 | 313 | 28 | 320 | 7.41e-29 | 118 |
| MS.gene86330.t1 | AT1G16260 | 25.382 | 327 | 194 | 14 | 1 | 302 | 9 | 310 | 4.31e-15 | 77.0 |
| MS.gene86330.t1 | AT1G16260 | 25.382 | 327 | 194 | 14 | 1 | 302 | 9 | 310 | 4.41e-15 | 77.0 |
| MS.gene86330.t1 | AT1G16260 | 25.382 | 327 | 194 | 14 | 1 | 302 | 9 | 310 | 4.41e-15 | 77.0 |
| MS.gene86330.t1 | AT1G79670 | 27.554 | 323 | 183 | 18 | 13 | 302 | 32 | 336 | 3.29e-12 | 68.2 |
Find 85 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTGACCCGCGTATATTT+TGG | 0.241339 | 1.3:+9855048 | None:intergenic |
| GATGACGAGGACGCAGATTT+TGG | 0.268207 | 1.3:-9854476 | MS.gene86330:CDS |
| TAACACGTCGATTTCAGATT+TGG | 0.295079 | 1.3:+9855003 | None:intergenic |
| TTCCAGGAGGAATATCAATT+TGG | 0.302719 | 1.3:+9854729 | None:intergenic |
| ATGGTGTTACCTACTGTTCT+TGG | 0.329425 | 1.3:-9853690 | MS.gene86330:intron |
| GTCAGATTCAGATTGTTTCT+TGG | 0.348472 | 1.3:-9855107 | MS.gene86330:CDS |
| TCCTTTCTCTGTTCCATCTC+CGG | 0.361751 | 1.3:+9853728 | None:intergenic |
| CCGTTACGGAACGCCGTTAC+GGG | 0.364021 | 1.3:-9853382 | MS.gene86330:CDS |
| AATAAATGATGGAAAATGTT+CGG | 0.386459 | 1.3:-9854765 | MS.gene86330:CDS |
| ATAAATGATGGAAAATGTTC+GGG | 0.386465 | 1.3:-9854764 | MS.gene86330:CDS |
| TACCAATGCCATTGCAATCC+AGG | 0.390565 | 1.3:-9854452 | MS.gene86330:CDS |
| AAATGAATAGCTACAAAATT+CGG | 0.390893 | 1.3:+9854664 | None:intergenic |
| AACCATACTGAGTACTCAAC+AGG | 0.405835 | 1.3:-9854815 | MS.gene86330:CDS |
| TCAGATTCAGATTGTTTCTT+GGG | 0.409700 | 1.3:-9855106 | MS.gene86330:CDS |
| AACTGCAGTACAGCTTCTAA+TGG | 0.419495 | 1.3:-9854533 | MS.gene86330:CDS |
| TGCCAAATTGATATTCCTCC+TGG | 0.422655 | 1.3:-9854731 | MS.gene86330:CDS |
| TTTGGTGATAAAATAAATGA+TGG | 0.423213 | 1.3:-9854776 | MS.gene86330:CDS |
| ACACTTATATTCCACATTCC+AGG | 0.424378 | 1.3:+9854713 | None:intergenic |
| AAAGAAATTCCACATCCATT+TGG | 0.425751 | 1.3:-9855145 | MS.gene86330:CDS |
| TATTCATTTGTTGTTAAGAA+TGG | 0.427976 | 1.3:-9854650 | MS.gene86330:CDS |
| GTGGTTCTTGACTGGACCAT+TGG | 0.434091 | 1.3:-9854569 | MS.gene86330:CDS |
| GCAAAATGTAAGAACAATGA+TGG | 0.437078 | 1.3:-9853783 | MS.gene86330:CDS |
| GGGTGCTTAACAAGAACTTT+TGG | 0.437379 | 1.3:-9854794 | MS.gene86330:CDS |
| CAAAATATACGCGGGTCACT+TGG | 0.442433 | 1.3:-9855047 | MS.gene86330:CDS |
| AATCGCCGTTACGGCCGTTA+CGG | 0.449757 | 1.3:-9853396 | MS.gene86330:CDS |
| AATTACCTGTGGTTCTTGAC+TGG | 0.452246 | 1.3:-9854577 | MS.gene86330:CDS |
| TCACATGAAAATCGCCGTTA+CGG | 0.465330 | 1.3:-9853405 | MS.gene86330:CDS |
| GCCGTTACGGAACGCCGTTA+CGG | 0.480233 | 1.3:-9853383 | MS.gene86330:CDS |
| ACCCTGTTGAGTACTCAGTA+TGG | 0.489932 | 1.3:+9854813 | None:intergenic |
| GTGTGTCCAAAGTGGTATTC+CGG | 0.490962 | 1.3:-9853747 | MS.gene86330:CDS |
| TCTTACTTCTCTGAGTATTG+TGG | 0.492042 | 1.3:-9854980 | MS.gene86330:CDS |
| ATGGAAAATGTTCGGGTGTA+GGG | 0.494920 | 1.3:-9854757 | MS.gene86330:CDS |
| ACGGCGTTTCGCGCCCGTAA+CGG | 0.498019 | 1.3:+9853369 | None:intergenic |
| GTTAACCATGGTGGTAGTAC+TGG | 0.498276 | 1.3:-9855224 | None:intergenic |
| TAAGGATTTCCTTCAAAACC+TGG | 0.499062 | 1.3:+9854434 | None:intergenic |
| TCAGATTGTTTCTTGGGAAG+TGG | 0.500151 | 1.3:-9855100 | MS.gene86330:CDS |
| TCCGGAGATGGAACAGAGAA+AGG | 0.500249 | 1.3:-9853729 | MS.gene86330:CDS |
| GTGCAGCCGTTGGGATGATA+AGG | 0.500531 | 1.3:+9854416 | None:intergenic |
| CACGTCGATTTCAGATTTGG+AGG | 0.501384 | 1.3:+9855006 | None:intergenic |
| ACCACAGGTAATTCCTTGAA+TGG | 0.504681 | 1.3:+9854587 | None:intergenic |
| TATCATCCCAACGGCTGCAC+AGG | 0.506570 | 1.3:-9854413 | MS.gene86330:intron |
| AGCTACAAAATTCGGATGAA+AGG | 0.508449 | 1.3:+9854672 | None:intergenic |
| ACGGGCGCGAAACGCCGTTA+CGG | 0.513135 | 1.3:-9853364 | MS.gene86330:CDS |
| CCAAAGTGGTATTCCGGAGA+TGG | 0.516993 | 1.3:-9853741 | MS.gene86330:CDS |
| CCCGTAACGGCGTTCCGTAA+CGG | 0.517573 | 1.3:+9853382 | None:intergenic |
| GTCTGTATAACGGAGTTTCG+CGG | 0.528547 | 1.3:+9853341 | None:intergenic |
| CTTCTAATGGAGTCAACAAT+GGG | 0.532919 | 1.3:-9854520 | MS.gene86330:CDS |
| GTTCTTGACTGGACCATTGG+TGG | 0.533869 | 1.3:-9854566 | MS.gene86330:CDS |
| CTTCAAAACCTGGATTGCAA+TGG | 0.536899 | 1.3:+9854444 | None:intergenic |
| TCGTTTATGCCAAATGGATG+TGG | 0.538337 | 1.3:+9855136 | None:intergenic |
| GAAAACAAGTTCATAACTGT+TGG | 0.542294 | 1.3:-9854875 | MS.gene86330:CDS |
| AAATTGACCTGTGCAGCCGT+TGG | 0.543949 | 1.3:+9854406 | None:intergenic |
| AATTGACCTGTGCAGCCGTT+GGG | 0.544763 | 1.3:+9854407 | None:intergenic |
| AACCTGGATTGCAATGGCAT+TGG | 0.545874 | 1.3:+9854450 | None:intergenic |
| AGGAGGGTGCACAAATTCAA+TGG | 0.546015 | 1.3:-9853709 | MS.gene86330:CDS |
| TGAAATGGTATATAAACCAC+TGG | 0.551238 | 1.3:+9854904 | None:intergenic |
| GAAGTGTCGTTTATGCCAAA+TGG | 0.551764 | 1.3:+9855130 | None:intergenic |
| CCATCTCCGGAATACCACTT+TGG | 0.552144 | 1.3:+9853741 | None:intergenic |
| GCTTCTAATGGAGTCAACAA+TGG | 0.564078 | 1.3:-9854521 | MS.gene86330:CDS |
| TTGATATTCCTCCTGGAATG+TGG | 0.569076 | 1.3:-9854724 | MS.gene86330:CDS |
| CAAAATGTAAGAACAATGAT+GGG | 0.572341 | 1.3:-9853782 | MS.gene86330:CDS |
| GCGTTCCGTAACGGCCGTAA+CGG | 0.572926 | 1.3:+9853391 | None:intergenic |
| ACTGTTGGTCGTAACAGTTA+CGG | 0.573801 | 1.3:-9854860 | MS.gene86330:CDS |
| GATGGAAAATGTTCGGGTGT+AGG | 0.578906 | 1.3:-9854758 | MS.gene86330:CDS |
| AATACTTGCAGTCAAACTTG+TGG | 0.593146 | 1.3:-9855172 | MS.gene86330:CDS |
| ACCATGGTGGTAGTACTGGT+TGG | 0.593261 | 1.3:-9855220 | MS.gene86330:CDS |
| CATTAAATCCAAAATATACG+CGG | 0.596031 | 1.3:-9855056 | MS.gene86330:CDS |
| ACCATTCAAGGAATTACCTG+TGG | 0.604988 | 1.3:-9854588 | MS.gene86330:CDS |
| ATGGTCCAGTCAAGAACCAC+AGG | 0.611205 | 1.3:+9854572 | None:intergenic |
| ACGGAGTTTCGCGGCCGTAA+CGG | 0.623319 | 1.3:+9853350 | None:intergenic |
| AGATGCTTACCAAGAACAGT+AGG | 0.623884 | 1.3:+9853681 | None:intergenic |
| ATTAAATCCAAAATATACGC+GGG | 0.625011 | 1.3:-9855055 | MS.gene86330:CDS |
| GAGATGGAACAGAGAAAGGA+GGG | 0.625034 | 1.3:-9853725 | MS.gene86330:CDS |
| GAATGTGAAAGAAACTTGCA+TGG | 0.631248 | 1.3:-9853819 | MS.gene86330:CDS |
| ACTTGCAGTCAAACTTGTGG+AGG | 0.637157 | 1.3:-9855169 | MS.gene86330:CDS |
| GGAGATGGAACAGAGAAAGG+AGG | 0.637697 | 1.3:-9853726 | MS.gene86330:CDS |
| ACAAATGTGTGTGTCCAAAG+TGG | 0.653868 | 1.3:-9853755 | MS.gene86330:CDS |
| GGAAATCCTTATCATCCCAA+CGG | 0.656620 | 1.3:-9854422 | MS.gene86330:CDS |
| ACTACAGCCACGTTTACCAG+TGG | 0.660168 | 1.3:-9854920 | MS.gene86330:CDS |
| ATATAAACCACTGGTAAACG+TGG | 0.670920 | 1.3:+9854913 | None:intergenic |
| GAATAGCTATTGTGATGACG+AGG | 0.683872 | 1.3:-9854489 | MS.gene86330:CDS |
| CTTATATTCCACATTCCAGG+AGG | 0.704057 | 1.3:+9854716 | None:intergenic |
| ACCATACTGAGTACTCAACA+GGG | 0.709839 | 1.3:-9854814 | MS.gene86330:CDS |
| AGTACTCAGTATGGTTACGA+CGG | 0.711173 | 1.3:+9854822 | None:intergenic |
| TCCAACCAGTACTACCACCA+TGG | 0.720168 | 1.3:+9855219 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAATTGTTTGAAAATA+TGG | - | chr1.3:9854664-9854683 | MS.gene86330:CDS | 10.0% |
| !! | GAATTTAAACAAAATAAATA+GGG | + | chr1.3:9854889-9854908 | None:intergenic | 10.0% |
| !! | TGAATTTAAACAAAATAAAT+AGG | + | chr1.3:9854890-9854909 | None:intergenic | 10.0% |
| !!! | TTTTATTTTTTCTTAAAACT+TGG | - | chr1.3:9854180-9854199 | MS.gene86330:intron | 10.0% |
| !! | ATATTATTTATTACTGCAAA+GGG | - | chr1.3:9854483-9854502 | MS.gene86330:CDS | 15.0% |
| !! | TATATTATTTATTACTGCAA+AGG | - | chr1.3:9854482-9854501 | MS.gene86330:CDS | 15.0% |
| !!! | AAATATGGTTACTTATTTTA+TGG | - | chr1.3:9854679-9854698 | MS.gene86330:CDS | 15.0% |
| !!! | AATATGGTTACTTATTTTAT+GGG | - | chr1.3:9854680-9854699 | MS.gene86330:CDS | 15.0% |
| !!! | ATGTTTGACTTTTTTTTTAA+AGG | + | chr1.3:9854326-9854345 | None:intergenic | 15.0% |
| !!! | CATACAAATAGTTTTAAATA+GGG | + | chr1.3:9854263-9854282 | None:intergenic | 15.0% |
| !! | AAATGAATAGCTACAAAATT+CGG | + | chr1.3:9853876-9853895 | None:intergenic | 20.0% |
| !! | ATGGTACAATATATTGTTTA+AGG | - | chr1.3:9854367-9854386 | MS.gene86330:intron | 20.0% |
| !!! | AATAAATGATGGAAAATGTT+CGG | - | chr1.3:9853772-9853791 | MS.gene86330:CDS | 20.0% |
| !!! | AATTTTTCAAGTCTGTATAA+CGG | + | chr1.3:9855209-9855228 | None:intergenic | 20.0% |
| !!! | ATATTTTGGATTTAATGCAA+TGG | + | chr1.3:9853478-9853497 | None:intergenic | 20.0% |
| !!! | CCATACAAATAGTTTTAAAT+AGG | + | chr1.3:9854264-9854283 | None:intergenic | 20.0% |
| !!! | CCTATTTAAAACTATTTGTA+TGG | - | chr1.3:9854261-9854280 | MS.gene86330:intron | 20.0% |
| !!! | TATTCATTTGTTGTTAAGAA+TGG | - | chr1.3:9853887-9853906 | MS.gene86330:intron | 20.0% |
| !!! | TTTGATATATTTTGAATGCA+GGG | - | chr1.3:9854999-9855018 | MS.gene86330:CDS | 20.0% |
| !!! | TTTGGTGATAAAATAAATGA+TGG | - | chr1.3:9853761-9853780 | MS.gene86330:CDS | 20.0% |
| ! | AAAAAAAGGTTTACCATTCA+AGG | - | chr1.3:9853937-9853956 | MS.gene86330:intron | 25.0% |
| ! | AAACATCAAACCAATCAAAA+TGG | - | chr1.3:9854340-9854359 | MS.gene86330:intron | 25.0% |
| ! | AACATCAAACCAATCAAAAT+GGG | - | chr1.3:9854341-9854360 | MS.gene86330:intron | 25.0% |
| ! | AAGTGAACTATTCATAAACT+GGG | - | chr1.3:9854976-9854995 | MS.gene86330:CDS | 25.0% |
| ! | AATATTCAATAGTTCAAGGA+TGG | - | chr1.3:9854427-9854446 | MS.gene86330:CDS | 25.0% |
| ! | ATCCTTGAACTATTGAATAT+TGG | + | chr1.3:9854428-9854447 | None:intergenic | 25.0% |
| ! | ATTAAATCCAAAATATACGC+GGG | - | chr1.3:9853482-9853501 | MS.gene86330:intron | 25.0% |
| ! | CAAAATGTAAGAACAATGAT+GGG | - | chr1.3:9854755-9854774 | MS.gene86330:CDS | 25.0% |
| ! | CATGCATATAAGAAATGTAA+AGG | + | chr1.3:9854924-9854943 | None:intergenic | 25.0% |
| ! | CATTAAATCCAAAATATACG+CGG | - | chr1.3:9853481-9853500 | MS.gene86330:intron | 25.0% |
| ! | TAAACAAAATAAATAGGGCA+TGG | + | chr1.3:9854884-9854903 | None:intergenic | 25.0% |
| ! | TAAGTGAACTATTCATAAAC+TGG | - | chr1.3:9854975-9854994 | MS.gene86330:CDS | 25.0% |
| ! | TCTTCAGCTCATTTAAAAAA+AGG | - | chr1.3:9853923-9853942 | MS.gene86330:intron | 25.0% |
| !! | ATAAATGATGGAAAATGTTC+GGG | - | chr1.3:9853773-9853792 | MS.gene86330:CDS | 25.0% |
| !! | TATGGATTAACCTACAAAAT+TGG | - | chr1.3:9854279-9854298 | MS.gene86330:intron | 25.0% |
| !!! | GACTTTTTTTTTAAAGGCTT+AGG | + | chr1.3:9854320-9854339 | None:intergenic | 25.0% |
| !!! | GTTTGATATATTTTGAATGC+AGG | - | chr1.3:9854998-9855017 | MS.gene86330:CDS | 25.0% |
| !!! | TTGATATATTTTGAATGCAG+GGG | - | chr1.3:9855000-9855019 | MS.gene86330:CDS | 25.0% |
| AAAGAAATTCCACATCCATT+TGG | - | chr1.3:9853392-9853411 | MS.gene86330:CDS | 30.0% | |
| CTCCAATATTCAATAGTTCA+AGG | - | chr1.3:9854423-9854442 | MS.gene86330:CDS | 30.0% | |
| GAAAACAAGTTCATAACTGT+TGG | - | chr1.3:9853662-9853681 | MS.gene86330:intron | 30.0% | |
| GCAAAATGTAAGAACAATGA+TGG | - | chr1.3:9854754-9854773 | MS.gene86330:CDS | 30.0% | |
| TGAAATGGTATATAAACCAC+TGG | + | chr1.3:9853636-9853655 | None:intergenic | 30.0% | |
| TTAATTACGTACTAATCCGA+AGG | - | chr1.3:9854210-9854229 | MS.gene86330:intron | 30.0% | |
| ! | AACCAATCAAAATGGGTTTA+TGG | - | chr1.3:9854348-9854367 | MS.gene86330:intron | 30.0% |
| ! | GGTCAATTTTCTTACTTGAA+TGG | - | chr1.3:9854145-9854164 | MS.gene86330:intron | 30.0% |
| ! | TCAGATTCAGATTGTTTCTT+GGG | - | chr1.3:9853431-9853450 | MS.gene86330:intron | 30.0% |
| ! | TTTTTGTTCTCAACGTGAAA+AGG | + | chr1.3:9855112-9855131 | None:intergenic | 30.0% |
| !! | CTTGTTTTCTTTGCTTGAAA+TGG | + | chr1.3:9853651-9853670 | None:intergenic | 30.0% |
| !! | TACCATAAACCCATTTTGAT+TGG | + | chr1.3:9854353-9854372 | None:intergenic | 30.0% |
| AACGTGAAAAGGACCAAAAA+CGG | + | chr1.3:9855101-9855120 | None:intergenic | 35.0% | |
| AATACTTGCAGTCAAACTTG+TGG | - | chr1.3:9853365-9853384 | MS.gene86330:CDS | 35.0% | |
| ACACTTATATTCCACATTCC+AGG | + | chr1.3:9853827-9853846 | None:intergenic | 35.0% | |
| AGCTACAAAATTCGGATGAA+AGG | + | chr1.3:9853868-9853887 | None:intergenic | 35.0% | |
| AGGAGCAAGGTTTCAAAAAA+CGG | - | chr1.3:9855024-9855043 | MS.gene86330:CDS | 35.0% | |
| ATATAAACCACTGGTAAACG+TGG | + | chr1.3:9853627-9853646 | None:intergenic | 35.0% | |
| CTTCTAATGGAGTCAACAAT+GGG | - | chr1.3:9854017-9854036 | MS.gene86330:intron | 35.0% | |
| GAATGTGAAAGAAACTTGCA+TGG | - | chr1.3:9854718-9854737 | MS.gene86330:CDS | 35.0% | |
| TAAGGATTTCCTTCAAAACC+TGG | + | chr1.3:9854106-9854125 | None:intergenic | 35.0% | |
| TTCCAGGAGGAATATCAATT+TGG | + | chr1.3:9853811-9853830 | None:intergenic | 35.0% | |
| ! | GTCAGATTCAGATTGTTTCT+TGG | - | chr1.3:9853430-9853449 | MS.gene86330:intron | 35.0% |
| ! | TCTTACTTCTCTGAGTATTG+TGG | - | chr1.3:9853557-9853576 | MS.gene86330:intron | 35.0% |
| !! | TAACACGTCGATTTCAGATT+TGG | + | chr1.3:9853537-9853556 | None:intergenic | 35.0% |
| !! | TATATTTTGAATGCAGGGGT+AGG | - | chr1.3:9855004-9855023 | MS.gene86330:CDS | 35.0% |
| AAAAGGACCAAAAACGGTCA+CGG | + | chr1.3:9855095-9855114 | None:intergenic | 40.0% | |
| AACCATACTGAGTACTCAAC+AGG | - | chr1.3:9853722-9853741 | MS.gene86330:CDS | 40.0% | |
| AACCTACAAAATTGGCATCG+AGG | - | chr1.3:9854287-9854306 | MS.gene86330:intron | 40.0% | |
| AACTGCAGTACAGCTTCTAA+TGG | - | chr1.3:9854004-9854023 | MS.gene86330:intron | 40.0% | |
| AATTACCTGTGGTTCTTGAC+TGG | - | chr1.3:9853960-9853979 | MS.gene86330:intron | 40.0% | |
| ACAAATGTGTGTGTCCAAAG+TGG | - | chr1.3:9854782-9854801 | MS.gene86330:CDS | 40.0% | |
| ACCACAGGTAATTCCTTGAA+TGG | + | chr1.3:9853953-9853972 | None:intergenic | 40.0% | |
| ACCATACTGAGTACTCAACA+GGG | - | chr1.3:9853723-9853742 | MS.gene86330:CDS | 40.0% | |
| ACCATTCAAGGAATTACCTG+TGG | - | chr1.3:9853949-9853968 | MS.gene86330:intron | 40.0% | |
| ACTGTTGGTCGTAACAGTTA+CGG | - | chr1.3:9853677-9853696 | MS.gene86330:intron | 40.0% | |
| AGATGCTTACCAAGAACAGT+AGG | + | chr1.3:9854859-9854878 | None:intergenic | 40.0% | |
| AGTACTCAGTATGGTTACGA+CGG | + | chr1.3:9853718-9853737 | None:intergenic | 40.0% | |
| ATGGAAAATGTTCGGGTGTA+GGG | - | chr1.3:9853780-9853799 | MS.gene86330:CDS | 40.0% | |
| CTTATATTCCACATTCCAGG+AGG | + | chr1.3:9853824-9853843 | None:intergenic | 40.0% | |
| CTTCAAAACCTGGATTGCAA+TGG | + | chr1.3:9854096-9854115 | None:intergenic | 40.0% | |
| GCTTCTAATGGAGTCAACAA+TGG | - | chr1.3:9854016-9854035 | MS.gene86330:intron | 40.0% | |
| GGAAATCCTTATCATCCCAA+CGG | - | chr1.3:9854115-9854134 | MS.gene86330:intron | 40.0% | |
| TAAATAGGGCCATCGCAAAT+GGG | + | chr1.3:9854249-9854268 | None:intergenic | 40.0% | |
| TCACATGAAAATCGCCGTTA+CGG | - | chr1.3:9855132-9855151 | MS.gene86330:CDS | 40.0% | |
| TCGTTTATGCCAAATGGATG+TGG | + | chr1.3:9853404-9853423 | None:intergenic | 40.0% | |
| TGCCAAATTGATATTCCTCC+TGG | - | chr1.3:9853806-9853825 | MS.gene86330:CDS | 40.0% | |
| TTAAATAGGGCCATCGCAAA+TGG | + | chr1.3:9854250-9854269 | None:intergenic | 40.0% | |
| TTCAAAAAACGGACCTGTAC+CGG | - | chr1.3:9855035-9855054 | MS.gene86330:CDS | 40.0% | |
| TTGATATTCCTCCTGGAATG+TGG | - | chr1.3:9853813-9853832 | MS.gene86330:CDS | 40.0% | |
| ! | ACCTACAAAATTGGCATCGA+GGG | - | chr1.3:9854288-9854307 | MS.gene86330:intron | 40.0% |
| ! | GAATAGCTATTGTGATGACG+AGG | - | chr1.3:9854048-9854067 | MS.gene86330:intron | 40.0% |
| ! | GGGTGCTTAACAAGAACTTT+TGG | - | chr1.3:9853743-9853762 | MS.gene86330:CDS | 40.0% |
| ! | GTTTTCATCAAAGCCACCAA+TGG | + | chr1.3:9853987-9854006 | None:intergenic | 40.0% |
| ! | TCAGATTGTTTCTTGGGAAG+TGG | - | chr1.3:9853437-9853456 | MS.gene86330:intron | 40.0% |
| !! | ATGGTGTTACCTACTGTTCT+TGG | - | chr1.3:9854847-9854866 | MS.gene86330:CDS | 40.0% |
| !! | CATTGCAATCCAGGTTTTGA+AGG | - | chr1.3:9854094-9854113 | MS.gene86330:intron | 40.0% |
| !! | GAAGTGTCGTTTATGCCAAA+TGG | + | chr1.3:9853410-9853429 | None:intergenic | 40.0% |
| AACCTGGATTGCAATGGCAT+TGG | + | chr1.3:9854090-9854109 | None:intergenic | 45.0% | |
| ACCCTGTTGAGTACTCAGTA+TGG | + | chr1.3:9853727-9853746 | None:intergenic | 45.0% | |
| ACTTGCAGTCAAACTTGTGG+AGG | - | chr1.3:9853368-9853387 | MS.gene86330:CDS | 45.0% | |
| ATATTGGAGCGACCTGATCA+AGG | + | chr1.3:9854412-9854431 | None:intergenic | 45.0% | |
| ATTTCACTGCCCATTTGCGA+TGG | - | chr1.3:9854237-9854256 | MS.gene86330:intron | 45.0% | |
| CAAAATATACGCGGGTCACT+TGG | - | chr1.3:9853490-9853509 | MS.gene86330:intron | 45.0% | |
| GAGATGGAACAGAGAAAGGA+GGG | - | chr1.3:9854812-9854831 | MS.gene86330:CDS | 45.0% | |
| GATGGAAAATGTTCGGGTGT+AGG | - | chr1.3:9853779-9853798 | MS.gene86330:CDS | 45.0% | |
| GTGTGTCCAAAGTGGTATTC+CGG | - | chr1.3:9854790-9854809 | MS.gene86330:CDS | 45.0% | |
| TACCAATGCCATTGCAATCC+AGG | - | chr1.3:9854085-9854104 | MS.gene86330:intron | 45.0% | |
| TCAAAAAACGGACCTGTACC+GGG | - | chr1.3:9855036-9855055 | MS.gene86330:CDS | 45.0% | |
| TCCTTTCTCTGTTCCATCTC+CGG | + | chr1.3:9854812-9854831 | None:intergenic | 45.0% | |
| TCGCAAATGGGCAGTGAAAT+TGG | + | chr1.3:9854237-9854256 | None:intergenic | 45.0% | |
| ! | AGGAGGGTGCACAAATTCAA+TGG | - | chr1.3:9854828-9854847 | MS.gene86330:CDS | 45.0% |
| ! | CAAGTGACCCGCGTATATTT+TGG | + | chr1.3:9853492-9853511 | None:intergenic | 45.0% |
| ! | GTCTGTATAACGGAGTTTCG+CGG | + | chr1.3:9855199-9855218 | None:intergenic | 45.0% |
| ! | TCCCTCGATGCCAATTTTGT+AGG | + | chr1.3:9854292-9854311 | None:intergenic | 45.0% |
| !! | CACGTCGATTTCAGATTTGG+AGG | + | chr1.3:9853534-9853553 | None:intergenic | 45.0% |
| !! | CTGCCGATACCGATTTGTAA+CGG | + | chr1.3:9855069-9855088 | None:intergenic | 45.0% |
| !!! | CGTGGCTGTAGTTTTTTCAC+TGG | + | chr1.3:9853609-9853628 | None:intergenic | 45.0% |
| AAATTGACCTGTGCAGCCGT+TGG | + | chr1.3:9854134-9854153 | None:intergenic | 50.0% | |
| AATCAGACCCGTCCTTGATC+AGG | - | chr1.3:9854397-9854416 | MS.gene86330:intron | 50.0% | |
| AATTGACCTGTGCAGCCGTT+GGG | + | chr1.3:9854133-9854152 | None:intergenic | 50.0% | |
| ACTACAGCCACGTTTACCAG+TGG | - | chr1.3:9853617-9853636 | MS.gene86330:intron | 50.0% | |
| ATGGTCCAGTCAAGAACCAC+AGG | + | chr1.3:9853968-9853987 | None:intergenic | 50.0% | |
| ATTTGTAACGGCCGCAATCC+CGG | + | chr1.3:9855057-9855076 | None:intergenic | 50.0% | |
| CCAAAGTGGTATTCCGGAGA+TGG | - | chr1.3:9854796-9854815 | MS.gene86330:CDS | 50.0% | |
| CCATCTCCGGAATACCACTT+TGG | + | chr1.3:9854799-9854818 | None:intergenic | 50.0% | |
| CGGCCGTTACAAATCGGTAT+CGG | - | chr1.3:9855063-9855082 | MS.gene86330:CDS | 50.0% | |
| GGAGATGGAACAGAGAAAGG+AGG | - | chr1.3:9854811-9854830 | MS.gene86330:CDS | 50.0% | |
| GGATTGCGGCCGTTACAAAT+CGG | - | chr1.3:9855057-9855076 | MS.gene86330:CDS | 50.0% | |
| GGGCAGTGAAATTGGACCTT+CGG | + | chr1.3:9854229-9854248 | None:intergenic | 50.0% | |
| GTGGTTCTTGACTGGACCAT+TGG | - | chr1.3:9853968-9853987 | MS.gene86330:intron | 50.0% | |
| GTTCTTGACTGGACCATTGG+TGG | - | chr1.3:9853971-9853990 | MS.gene86330:intron | 50.0% | |
| TCCGGAGATGGAACAGAGAA+AGG | - | chr1.3:9854808-9854827 | MS.gene86330:CDS | 50.0% | |
| ! | GATGACGAGGACGCAGATTT+TGG | - | chr1.3:9854061-9854080 | MS.gene86330:intron | 50.0% |
| AATCGCCGTTACGGCCGTTA+CGG | - | chr1.3:9855141-9855160 | MS.gene86330:CDS | 55.0% | |
| AGGACCAAAAACGGTCACGG+TGG | + | chr1.3:9855092-9855111 | None:intergenic | 55.0% | |
| GTGCAGCCGTTGGGATGATA+AGG | + | chr1.3:9854124-9854143 | None:intergenic | 55.0% | |
| TATCATCCCAACGGCTGCAC+AGG | - | chr1.3:9854124-9854143 | MS.gene86330:intron | 55.0% | |
| TGAATGCAGGGGTAGGAGCA+AGG | - | chr1.3:9855011-9855030 | MS.gene86330:CDS | 55.0% | |
| TGGAGCGACCTGATCAAGGA+CGG | + | chr1.3:9854408-9854427 | None:intergenic | 55.0% | |
| ACGGACCTGTACCGGGATTG+CGG | - | chr1.3:9855043-9855062 | MS.gene86330:CDS | 60.0% | |
| ACGGAGTTTCGCGGCCGTAA+CGG | + | chr1.3:9855190-9855209 | None:intergenic | 60.0% | |
| CCCGTAACGGCGTTCCGTAA+CGG | + | chr1.3:9855158-9855177 | None:intergenic | 60.0% | |
| CCGTTACGGAACGCCGTTAC+GGG | - | chr1.3:9855155-9855174 | MS.gene86330:CDS | 60.0% | |
| GCCGTTACGGAACGCCGTTA+CGG | - | chr1.3:9855154-9855173 | MS.gene86330:CDS | 60.0% | |
| GCGTTCCGTAACGGCCGTAA+CGG | + | chr1.3:9855149-9855168 | None:intergenic | 60.0% | |
| GGAGCGACCTGATCAAGGAC+GGG | + | chr1.3:9854407-9854426 | None:intergenic | 60.0% | |
| ! | GCAGCCACCGTGACCGTTTT+TGG | - | chr1.3:9855085-9855104 | MS.gene86330:CDS | 60.0% |
| AACGGCCGCAATCCCGGTAC+AGG | + | chr1.3:9855051-9855070 | None:intergenic | 65.0% | |
| ACGGCGTTTCGCGCCCGTAA+CGG | + | chr1.3:9855171-9855190 | None:intergenic | 65.0% | |
| ACGGGCGCGAAACGCCGTTA+CGG | - | chr1.3:9855173-9855192 | MS.gene86330:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 9853320 | 9855239 | 9853320 | ID=MS.gene86330 |
| chr1.3 | mRNA | 9853320 | 9855239 | 9853320 | ID=MS.gene86330.t1;Parent=MS.gene86330 |
| chr1.3 | exon | 9854414 | 9855239 | 9854414 | ID=MS.gene86330.t1.exon1;Parent=MS.gene86330.t1 |
| chr1.3 | CDS | 9854414 | 9855239 | 9854414 | ID=cds.MS.gene86330.t1;Parent=MS.gene86330.t1 |
| chr1.3 | exon | 9853691 | 9853849 | 9853691 | ID=MS.gene86330.t1.exon2;Parent=MS.gene86330.t1 |
| chr1.3 | CDS | 9853691 | 9853849 | 9853691 | ID=cds.MS.gene86330.t1;Parent=MS.gene86330.t1 |
| chr1.3 | exon | 9853320 | 9853435 | 9853320 | ID=MS.gene86330.t1.exon3;Parent=MS.gene86330.t1 |
| chr1.3 | CDS | 9853320 | 9853435 | 9853320 | ID=cds.MS.gene86330.t1;Parent=MS.gene86330.t1 |
| Gene Sequence |
| Protein sequence |
