Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86353.t1 | XP_003597838.1 | 96.8 | 158 | 5 | 0 | 1 | 158 | 1 | 158 | 2.30E-80 | 308.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86353.t1 | Q8LBK6 | 64.0 | 164 | 53 | 3 | 1 | 158 | 5 | 168 | 1.0e-52 | 207.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86353.t1 | G7IMH4 | 96.8 | 158 | 5 | 0 | 1 | 158 | 1 | 158 | 1.7e-80 | 308.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene86353 | 0.809414 | 1.92E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene86353 | -0.812569 | 3.97E-51 | -1.69E-46 |
| MS.gene054657 | MS.gene86353 | 0.807324 | 5.34E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene86353 | 0.802219 | 6.22E-49 | -1.69E-46 |
| MS.gene059569 | MS.gene86353 | 0.838172 | 3.37E-57 | -1.69E-46 |
| MS.gene060572 | MS.gene86353 | 0.832057 | 1.17E-55 | -1.69E-46 |
| MS.gene060803 | MS.gene86353 | 0.811592 | 6.48E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86353.t1 | MTR_2g103130 | 96.835 | 158 | 5 | 0 | 1 | 158 | 1 | 158 | 2.28e-114 | 320 |
| MS.gene86353.t1 | MTR_4g088905 | 44.000 | 125 | 70 | 0 | 29 | 153 | 259 | 383 | 4.37e-30 | 114 |
| MS.gene86353.t1 | MTR_4g088905 | 45.545 | 101 | 55 | 0 | 53 | 153 | 154 | 254 | 1.24e-28 | 110 |
| MS.gene86353.t1 | MTR_4g088905 | 46.739 | 92 | 48 | 1 | 63 | 153 | 400 | 491 | 3.27e-25 | 100 |
| MS.gene86353.t1 | MTR_7g079520 | 42.105 | 95 | 55 | 0 | 55 | 149 | 79 | 173 | 1.14e-26 | 99.4 |
| MS.gene86353.t1 | MTR_4g016930 | 37.500 | 96 | 57 | 1 | 55 | 147 | 196 | 291 | 2.62e-18 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86353.t1 | AT3G15660 | 64.024 | 164 | 53 | 3 | 1 | 158 | 5 | 168 | 2.61e-73 | 217 |
| MS.gene86353.t1 | AT3G15660 | 64.024 | 164 | 53 | 3 | 1 | 158 | 5 | 168 | 2.61e-73 | 217 |
| MS.gene86353.t1 | AT4G04950 | 46.535 | 101 | 54 | 0 | 54 | 154 | 152 | 252 | 1.53e-30 | 115 |
| MS.gene86353.t1 | AT4G04950 | 46.226 | 106 | 55 | 1 | 50 | 153 | 276 | 381 | 4.43e-27 | 105 |
| MS.gene86353.t1 | AT4G04950 | 35.443 | 158 | 94 | 1 | 4 | 153 | 331 | 488 | 1.38e-26 | 104 |
| MS.gene86353.t1 | AT3G54900 | 41.176 | 119 | 65 | 2 | 42 | 156 | 55 | 172 | 5.23e-29 | 105 |
| MS.gene86353.t1 | AT2G38270 | 40.000 | 100 | 57 | 1 | 55 | 151 | 193 | 292 | 3.68e-21 | 87.4 |
Find 27 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAATAGTTCCAGTTATTA+TGG | 0.231534 | 2.3:+1719244 | MS.gene86353:CDS |
| AAAATGTTCCTAGCACTTAA+AGG | 0.239296 | 2.3:-1720528 | None:intergenic |
| ACTAATAAACTTGAGAATTC+TGG | 0.269273 | 2.3:+1719325 | MS.gene86353:CDS |
| TTCATTAAGGGAGAGTTTAT+TGG | 0.294164 | 2.3:+1721417 | MS.gene86353:CDS |
| CTTGTAGAGTGGTGAGTTAA+AGG | 0.353923 | 2.3:+1721544 | MS.gene86353:intron |
| GTATCTCATTCCATAATAAC+TGG | 0.376771 | 2.3:-1719254 | None:intergenic |
| CCCTTCATGTAAATCATAAC+AGG | 0.387480 | 2.3:-1719488 | None:intergenic |
| AATCCACACTGTGGGAAATC+AGG | 0.415306 | 2.3:-1719515 | None:intergenic |
| TTTGTCAAGTATTGTTGAGC+AGG | 0.430543 | 2.3:+1719354 | MS.gene86353:CDS |
| TCCTGTTATGATTTACATGA+AGG | 0.434713 | 2.3:+1719487 | MS.gene86353:CDS |
| CAGATGTTCCTTTAAGTGCT+AGG | 0.438137 | 2.3:+1720520 | MS.gene86353:intron |
| GAATTCTCAAGTTTATTAGT+TGG | 0.447427 | 2.3:-1719322 | None:intergenic |
| ATTAAGGGAGAGTTTATTGG+TGG | 0.524548 | 2.3:+1721420 | MS.gene86353:CDS |
| ATGAAAACTTGTGGAAATGT+TGG | 0.528223 | 2.3:-1721399 | None:intergenic |
| CCTGTTATGATTTACATGAA+GGG | 0.540704 | 2.3:+1719488 | MS.gene86353:CDS |
| AGCGATTCCCTTGAAAAGAA+TGG | 0.556100 | 2.3:-1717947 | None:intergenic |
| AAAATGCTGTAAAAGCCTAC+AGG | 0.564696 | 2.3:+1720568 | MS.gene86353:CDS |
| TATTGTTCTTAGTATGCACC+AGG | 0.565729 | 2.3:+1721449 | MS.gene86353:CDS |
| TGGAATGAGATACACAACTA+AGG | 0.585500 | 2.3:+1719264 | MS.gene86353:CDS |
| CTTGAAAAGAATGGTCGCCA+TGG | 0.597220 | 2.3:-1717938 | None:intergenic |
| TAATAATGTACAGGATGTCA+AGG | 0.615496 | 2.3:+1719460 | MS.gene86353:intron |
| GAGAACTAAATCCACACTGT+GGG | 0.625350 | 2.3:-1719523 | None:intergenic |
| TCTCCCTTAATGAAAACTTG+TGG | 0.625424 | 2.3:-1721408 | None:intergenic |
| GTACCTGATTTCCCACAGTG+TGG | 0.627551 | 2.3:+1719512 | MS.gene86353:CDS |
| TTTGAAGTCATCGTGTGTGT+CGG | 0.634139 | 2.3:-1719299 | None:intergenic |
| GGTTGGAAAGCTTACACGTG+TGG | 0.644303 | 2.3:-1717983 | None:intergenic |
| AGAGAACTAAATCCACACTG+TGG | 0.712972 | 2.3:-1719524 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAAAAATTAAGTTAA+AGG | + | chr2.3:1720684-1720703 | MS.gene86353:intron | 10.0% |
| !! | AGTAAATTTAAAAAGAAAAA+GGG | - | chr2.3:1718760-1718779 | None:intergenic | 10.0% |
| !!! | AATGTTAATTTTAAAAAACT+AGG | - | chr2.3:1720654-1720673 | None:intergenic | 10.0% |
| !!! | CTTTATTTTATATTTTGTTA+TGG | - | chr2.3:1718333-1718352 | None:intergenic | 10.0% |
| !! | AGAAAAAAAGAAGAAAATTA+GGG | - | chr2.3:1718019-1718038 | None:intergenic | 15.0% |
| !! | CAGTAAATTTAAAAAGAAAA+AGG | - | chr2.3:1718761-1718780 | None:intergenic | 15.0% |
| !! | TAATTATATAAGTTTAACCA+TGG | + | chr2.3:1718446-1718465 | MS.gene86353:intron | 15.0% |
| !!! | GAAACTAAAACAATTTTAAA+GGG | + | chr2.3:1720248-1720267 | MS.gene86353:intron | 15.0% |
| !!! | GTTAAAGTTTTAAAACAATA+TGG | + | chr2.3:1719551-1719570 | MS.gene86353:CDS | 15.0% |
| !!! | TCAATTGTTTAATTTACTTA+TGG | + | chr2.3:1720372-1720391 | MS.gene86353:intron | 15.0% |
| !! | AGGGAAAAGTAAATTATATT+TGG | - | chr2.3:1721299-1721318 | None:intergenic | 20.0% |
| !! | ATTGTAAAGTGATTTATGTT+TGG | + | chr2.3:1718483-1718502 | MS.gene86353:intron | 20.0% |
| !! | CAATTATTAAGCTGTTAAAA+GGG | - | chr2.3:1721318-1721337 | None:intergenic | 20.0% |
| !! | CAGAAAAAAAGAAGAAAATT+AGG | - | chr2.3:1718020-1718039 | None:intergenic | 20.0% |
| !! | CTGATCTTCATTAATATATT+TGG | - | chr2.3:1720810-1720829 | None:intergenic | 20.0% |
| !! | TCAATTATTAAGCTGTTAAA+AGG | - | chr2.3:1721319-1721338 | None:intergenic | 20.0% |
| !! | TTACATTTCTACAAACATTA+TGG | + | chr2.3:1719737-1719756 | MS.gene86353:intron | 20.0% |
| !! | TTTATTCATCAGATTGAAAT+GGG | + | chr2.3:1718136-1718155 | MS.gene86353:intron | 20.0% |
| !!! | AAAACACATTTGAAACTTAA+AGG | - | chr2.3:1720351-1720370 | None:intergenic | 20.0% |
| !!! | AAATCTTGAAAAGCTTTTTT+AGG | + | chr2.3:1718245-1718264 | MS.gene86353:intron | 20.0% |
| !!! | AGAATTTTGATATCCTTTAA+TGG | + | chr2.3:1720925-1720944 | MS.gene86353:intron | 20.0% |
| !!! | GGAAACTAAAACAATTTTAA+AGG | + | chr2.3:1720247-1720266 | MS.gene86353:intron | 20.0% |
| !!! | TGAAGTTACAGTTTTATTTT+TGG | + | chr2.3:1721046-1721065 | MS.gene86353:intron | 20.0% |
| !!! | TTTGGTTTTATTATGTTGAA+TGG | + | chr2.3:1720176-1720195 | MS.gene86353:intron | 20.0% |
| !!! | TTTTATTCATCAGATTGAAA+TGG | + | chr2.3:1718135-1718154 | MS.gene86353:intron | 20.0% |
| !!! | TTTTCGTGTTATGATTTAAA+TGG | + | chr2.3:1719141-1719160 | MS.gene86353:intron | 20.0% |
| ! | AAACTATACGAGAAACTATT+AGG | + | chr2.3:1719980-1719999 | MS.gene86353:intron | 25.0% |
| ! | ACACGATTGATATTTGAAAA+TGG | - | chr2.3:1720904-1720923 | None:intergenic | 25.0% |
| ! | ACTAATAAACTTGAGAATTC+TGG | + | chr2.3:1719325-1719344 | MS.gene86353:CDS | 25.0% |
| ! | CTAAATAGTTCCAGTTATTA+TGG | + | chr2.3:1719244-1719263 | MS.gene86353:CDS | 25.0% |
| ! | GAATTCTCAAGTTTATTAGT+TGG | - | chr2.3:1719325-1719344 | None:intergenic | 25.0% |
| ! | GATCATTATGATTAAATTGC+AGG | - | chr2.3:1720292-1720311 | None:intergenic | 25.0% |
| ! | GATGTGAAATATTGTTAAAC+AGG | - | chr2.3:1721524-1721543 | None:intergenic | 25.0% |
| ! | TATTCACAGTAAATTTCTGT+AGG | - | chr2.3:1720398-1720417 | None:intergenic | 25.0% |
| ! | TCTGATGAATAAAAATTGCA+AGG | - | chr2.3:1718129-1718148 | None:intergenic | 25.0% |
| ! | TGAATATGACTTAGATTTAC+TGG | + | chr2.3:1720445-1720464 | MS.gene86353:intron | 25.0% |
| ! | TTAATGGCTATGAAATTCAA+TGG | + | chr2.3:1720941-1720960 | MS.gene86353:intron | 25.0% |
| ! | TTGAATTTCATAGCCATTAA+AGG | - | chr2.3:1720941-1720960 | None:intergenic | 25.0% |
| ! | TTTGTTTGTTCGTTAAAATG+TGG | + | chr2.3:1719170-1719189 | MS.gene86353:intron | 25.0% |
| !! | ATTGTGTTTTCTGTATGTAA+TGG | + | chr2.3:1719193-1719212 | MS.gene86353:intron | 25.0% |
| !! | ATTTCCACAAGTTTTCATTA+AGG | + | chr2.3:1721404-1721423 | MS.gene86353:CDS | 25.0% |
| !! | ATTTTCAAACATAGTAGTAC+CGG | + | chr2.3:1721260-1721279 | MS.gene86353:intron | 25.0% |
| !! | GTTTATGTAATCTCATGTTT+TGG | + | chr2.3:1720158-1720177 | MS.gene86353:intron | 25.0% |
| !! | TCTTTGCATTTAAAGTGATA+TGG | + | chr2.3:1721209-1721228 | MS.gene86353:intron | 25.0% |
| !! | TTTCCACAAGTTTTCATTAA+GGG | + | chr2.3:1721405-1721424 | MS.gene86353:CDS | 25.0% |
| !! | TTTTTCCATTTTACGGTATT+GGG | + | chr2.3:1718064-1718083 | MS.gene86353:intron | 25.0% |
| !!! | AGAAAATTAGGGTTTGTTTT+AGG | - | chr2.3:1718008-1718027 | None:intergenic | 25.0% |
| !!! | ATTTTAAAGGGTTAGTACAT+AGG | + | chr2.3:1720260-1720279 | MS.gene86353:intron | 25.0% |
| !!! | CTTTATTTTACCTTTGGTTA+TGG | - | chr2.3:1718888-1718907 | None:intergenic | 25.0% |
| !!! | GAAAATTAGGGTTTGTTTTA+GGG | - | chr2.3:1718007-1718026 | None:intergenic | 25.0% |
| !!! | GTTTGACTTTATTTTACCTT+TGG | - | chr2.3:1718894-1718913 | None:intergenic | 25.0% |
| AAAATGTTCCTAGCACTTAA+AGG | - | chr2.3:1720531-1720550 | None:intergenic | 30.0% | |
| AAATTGATCAACTCTTGCAA+TGG | - | chr2.3:1721482-1721501 | None:intergenic | 30.0% | |
| AATAAGGAGAATAGATCAGA+TGG | + | chr2.3:1719918-1719937 | MS.gene86353:intron | 30.0% | |
| AATTGATCAACTCTTGCAAT+GGG | - | chr2.3:1721481-1721500 | None:intergenic | 30.0% | |
| ACATATATCAACAACGTACA+AGG | - | chr2.3:1721143-1721162 | None:intergenic | 30.0% | |
| AGCTTAATAATTGACAGATG+AGG | + | chr2.3:1721325-1721344 | MS.gene86353:intron | 30.0% | |
| ATATAATTTCTCAGGTAGCA+AGG | - | chr2.3:1719605-1719624 | None:intergenic | 30.0% | |
| ATGAAAACTTGTGGAAATGT+TGG | - | chr2.3:1721402-1721421 | None:intergenic | 30.0% | |
| ATGATCTTCAGATTATTGAC+AGG | - | chr2.3:1720975-1720994 | None:intergenic | 30.0% | |
| CCAAAAGTCAATCTTAGTTA+AGG | - | chr2.3:1719087-1719106 | None:intergenic | 30.0% | |
| CCTGTTATGATTTACATGAA+GGG | + | chr2.3:1719488-1719507 | MS.gene86353:CDS | 30.0% | |
| GAGGAAAATGAAGAAAACAA+AGG | - | chr2.3:1718093-1718112 | None:intergenic | 30.0% | |
| GTACATGAGAATTCTATGAA+GGG | + | chr2.3:1719400-1719419 | MS.gene86353:intron | 30.0% | |
| GTATCTCATTCCATAATAAC+TGG | - | chr2.3:1719257-1719276 | None:intergenic | 30.0% | |
| TAATAATGTACAGGATGTCA+AGG | + | chr2.3:1719460-1719479 | MS.gene86353:intron | 30.0% | |
| TACGATAGCAAAACAATTTC+AGG | - | chr2.3:1718192-1718211 | None:intergenic | 30.0% | |
| TAGATTTACTGGATGATGAA+TGG | + | chr2.3:1720456-1720475 | MS.gene86353:intron | 30.0% | |
| TATACGAGAAACTATTAGGA+AGG | + | chr2.3:1719984-1720003 | MS.gene86353:intron | 30.0% | |
| TCCTGTTATGATTTACATGA+AGG | + | chr2.3:1719487-1719506 | MS.gene86353:CDS | 30.0% | |
| TGTACATGAGAATTCTATGA+AGG | + | chr2.3:1719399-1719418 | MS.gene86353:intron | 30.0% | |
| TTCAGAGGATATAATTTCTC+AGG | - | chr2.3:1719613-1719632 | None:intergenic | 30.0% | |
| TTCATGTTCTACTAAGACAA+TGG | + | chr2.3:1718789-1718808 | MS.gene86353:intron | 30.0% | |
| TTCATTAAGGGAGAGTTTAT+TGG | + | chr2.3:1721417-1721436 | MS.gene86353:CDS | 30.0% | |
| TTCCTATGTGTTTGATTATG+TGG | + | chr2.3:1718398-1718417 | MS.gene86353:intron | 30.0% | |
| TTGAAGAGGATGAAATCAAA+AGG | - | chr2.3:1720220-1720239 | None:intergenic | 30.0% | |
| ! | AAAAGCATGGAACTTTATGA+TGG | - | chr2.3:1718048-1718067 | None:intergenic | 30.0% |
| ! | AATGAGTTGGAGAAAAAACA+TGG | + | chr2.3:1720018-1720037 | MS.gene86353:intron | 30.0% |
| ! | ATTTGTTGAATGTAGCTGAT+GGG | + | chr2.3:1719766-1719785 | MS.gene86353:intron | 30.0% |
| ! | CTTTTTCCATTTTACGGTAT+TGG | + | chr2.3:1718063-1718082 | MS.gene86353:intron | 30.0% |
| ! | GTTTCTCGTATAGTTTTTCT+AGG | - | chr2.3:1719976-1719995 | None:intergenic | 30.0% |
| ! | TAAGCTATTTCCATAACCAA+AGG | + | chr2.3:1718875-1718894 | MS.gene86353:intron | 30.0% |
| ! | TCTAGCTTGAAGCTAAAATT+TGG | - | chr2.3:1718577-1718596 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | chr2.3:1720038-1720057 | MS.gene86353:intron | 30.0% |
| ! | TTTACAGCATTTTTCACTTC+AGG | - | chr2.3:1720561-1720580 | None:intergenic | 30.0% |
| ! | TTTGATTTCATCCTCTTCAA+CGG | + | chr2.3:1720220-1720239 | MS.gene86353:intron | 30.0% |
| ! | TTTTCTGTATGTAATGGTGT+TGG | + | chr2.3:1719199-1719218 | MS.gene86353:intron | 30.0% |
| !! | AATTTGTTGAATGTAGCTGA+TGG | + | chr2.3:1719765-1719784 | MS.gene86353:intron | 30.0% |
| !! | CCTTAACTAAGATTGACTTT+TGG | + | chr2.3:1719084-1719103 | MS.gene86353:intron | 30.0% |
| !! | CTACCATCTTTTCTAGTATA+GGG | - | chr2.3:1719852-1719871 | None:intergenic | 30.0% |
| !! | GTGACTTGTTAATAATGTAC+AGG | + | chr2.3:1719451-1719470 | MS.gene86353:intron | 30.0% |
| !! | TACCATCTTTTCTAGTATAG+GGG | - | chr2.3:1719851-1719870 | None:intergenic | 30.0% |
| !! | TCTACCATCTTTTCTAGTAT+AGG | - | chr2.3:1719853-1719872 | None:intergenic | 30.0% |
| !!! | AATCTGAACTAGTCTTTTCA+TGG | + | chr2.3:1719631-1719650 | MS.gene86353:intron | 30.0% |
| !!! | GTATGTTCGGTTTCATTTTT+TGG | - | chr2.3:1718684-1718703 | None:intergenic | 30.0% |
| !!! | TACACCTCTAGAATCAATTT+TGG | + | chr2.3:1718653-1718672 | MS.gene86353:intron | 30.0% |
| !!! | TCCATGCTTTTTCCATTTTA+CGG | + | chr2.3:1718057-1718076 | MS.gene86353:intron | 30.0% |
| !!! | TGAAGGGTTTATTGTTTTGA+TGG | + | chr2.3:1719416-1719435 | MS.gene86353:intron | 30.0% |
| AAAATGCTGTAAAAGCCTAC+AGG | + | chr2.3:1720568-1720587 | MS.gene86353:CDS | 35.0% | |
| AAACTAGACATAGGTGGTTT+CGG | + | chr2.3:1719872-1719891 | MS.gene86353:intron | 35.0% | |
| AACCCCTATACTAGAAAAGA+TGG | + | chr2.3:1719846-1719865 | MS.gene86353:intron | 35.0% | |
| AAGTTATCCTGGATATCTTG+TGG | + | chr2.3:1718949-1718968 | MS.gene86353:intron | 35.0% | |
| AATTCACTCACTTATAGCCA+TGG | - | chr2.3:1718466-1718485 | None:intergenic | 35.0% | |
| ACCGTAAAATGGAAAAAGCA+TGG | - | chr2.3:1718061-1718080 | None:intergenic | 35.0% | |
| ACGACATTAGATAGAGAGTT+GGG | + | chr2.3:1719821-1719840 | MS.gene86353:intron | 35.0% | |
| AGAGGCAAAATCAATTATCC+TGG | + | chr2.3:1718609-1718628 | MS.gene86353:intron | 35.0% | |
| AGATGGTAGAAACTAGACAT+AGG | + | chr2.3:1719863-1719882 | MS.gene86353:intron | 35.0% | |
| AGCTTGTGGATTCTGTAATA+AGG | + | chr2.3:1719902-1719921 | MS.gene86353:intron | 35.0% | |
| AGGATGAAATCAAAAGGCAA+GGG | - | chr2.3:1720214-1720233 | None:intergenic | 35.0% | |
| ATTAAGGGAGAGTTTATTGG+TGG | + | chr2.3:1721420-1721439 | MS.gene86353:CDS | 35.0% | |
| CACCACATAATCAAACACAT+AGG | - | chr2.3:1718403-1718422 | None:intergenic | 35.0% | |
| CATCCTATATAAGTTTGTGC+GGG | - | chr2.3:1720325-1720344 | None:intergenic | 35.0% | |
| CCCTTCATGTAAATCATAAC+AGG | - | chr2.3:1719491-1719510 | None:intergenic | 35.0% | |
| CTTATTTCCACAAGATATCC+AGG | - | chr2.3:1718959-1718978 | None:intergenic | 35.0% | |
| GAAAAAGGGCTAAAATTGAG+TGG | - | chr2.3:1718746-1718765 | None:intergenic | 35.0% | |
| GATTTCAACTTATCTAGTCG+TGG | + | chr2.3:1721089-1721108 | MS.gene86353:intron | 35.0% | |
| GCAAAATCAATTATCCTGGA+GGG | + | chr2.3:1718613-1718632 | MS.gene86353:intron | 35.0% | |
| GCAAGGTGAGAAATTATAAG+AGG | - | chr2.3:1718112-1718131 | None:intergenic | 35.0% | |
| GCACAAACTTATATAGGATG+CGG | + | chr2.3:1720325-1720344 | MS.gene86353:intron | 35.0% | |
| GCATCCTATATAAGTTTGTG+CGG | - | chr2.3:1720326-1720345 | None:intergenic | 35.0% | |
| GCTAGAATCAATTCTTCTAG+AGG | + | chr2.3:1718591-1718610 | MS.gene86353:intron | 35.0% | |
| GGATCTAGAGATAAATGAGT+TGG | + | chr2.3:1720005-1720024 | MS.gene86353:intron | 35.0% | |
| TAACCCGCACAAACTTATAT+AGG | + | chr2.3:1720319-1720338 | MS.gene86353:intron | 35.0% | |
| TATTGTTCTTAGTATGCACC+AGG | + | chr2.3:1721449-1721468 | MS.gene86353:CDS | 35.0% | |
| TATTGTTGTAGCTGATGTCA+TGG | + | chr2.3:1720125-1720144 | MS.gene86353:intron | 35.0% | |
| TATTTCACATCCTTGTAGAG+TGG | + | chr2.3:1721533-1721552 | MS.gene86353:intron | 35.0% | |
| TCAAATCAGTCAATTCAGAC+AGG | + | chr2.3:1719061-1719080 | MS.gene86353:intron | 35.0% | |
| TCTCCCTTAATGAAAACTTG+TGG | - | chr2.3:1721411-1721430 | None:intergenic | 35.0% | |
| TGGAATGAGATACACAACTA+AGG | + | chr2.3:1719264-1719283 | MS.gene86353:CDS | 35.0% | |
| TGTGGAAATAAGCTGAAAAC+AGG | + | chr2.3:1718967-1718986 | MS.gene86353:intron | 35.0% | |
| TTGATATATGTACATGCGTC+TGG | + | chr2.3:1721152-1721171 | MS.gene86353:intron | 35.0% | |
| ! | AAAGACTAGTTCAGATTCAG+AGG | - | chr2.3:1719628-1719647 | None:intergenic | 35.0% |
| ! | AGAGGTGTAGAATACATGTT+TGG | - | chr2.3:1718642-1718661 | None:intergenic | 35.0% |
| ! | ATGGGTTTATTGACTAGACA+GGG | + | chr2.3:1719784-1719803 | MS.gene86353:intron | 35.0% |
| ! | TGAGTGGCGATATTTACTTT+TGG | - | chr2.3:1718730-1718749 | None:intergenic | 35.0% |
| ! | TTTGTCAAGTATTGTTGAGC+AGG | + | chr2.3:1719354-1719373 | MS.gene86353:CDS | 35.0% |
| !!! | AAGCTTTTTTAGGCTCTGTT+TGG | + | chr2.3:1718255-1718274 | MS.gene86353:intron | 35.0% |
| !!! | ATTAGGGTTTGTTTTAGGGT+TGG | - | chr2.3:1718003-1718022 | None:intergenic | 35.0% |
| !!! | TGTTCGGTTTCATTTTTTGG+AGG | - | chr2.3:1718681-1718700 | None:intergenic | 35.0% |
| AAGGAGAATAGATCAGATGG+AGG | + | chr2.3:1719921-1719940 | MS.gene86353:intron | 40.0% | |
| ACAATCACTTGAGACTGTCT+GGG | - | chr2.3:1719027-1719046 | None:intergenic | 40.0% | |
| AGAGAACTAAATCCACACTG+TGG | - | chr2.3:1719527-1719546 | None:intergenic | 40.0% | |
| AGCGATTCCCTTGAAAAGAA+TGG | - | chr2.3:1717950-1717969 | None:intergenic | 40.0% | |
| AGGAGAATAGATCAGATGGA+GGG | + | chr2.3:1719922-1719941 | MS.gene86353:intron | 40.0% | |
| CAGATGTTCCTTTAAGTGCT+AGG | + | chr2.3:1720520-1720539 | MS.gene86353:intron | 40.0% | |
| CGACATTAGATAGAGAGTTG+GGG | + | chr2.3:1719822-1719841 | MS.gene86353:intron | 40.0% | |
| CTTATGAAGACAGCTGCTTA+TGG | - | chr2.3:1718932-1718951 | None:intergenic | 40.0% | |
| CTTGTAGAGTGGTGAGTTAA+AGG | + | chr2.3:1721544-1721563 | MS.gene86353:intron | 40.0% | |
| CTTTAACTCACCACTCTACA+AGG | - | chr2.3:1721546-1721565 | None:intergenic | 40.0% | |
| GACGACATTAGATAGAGAGT+TGG | + | chr2.3:1719820-1719839 | MS.gene86353:intron | 40.0% | |
| GAGAACTAAATCCACACTGT+GGG | - | chr2.3:1719526-1719545 | None:intergenic | 40.0% | |
| GAGGATGAAATCAAAAGGCA+AGG | - | chr2.3:1720215-1720234 | None:intergenic | 40.0% | |
| GCATGAACAAACTTACCTGT+AGG | - | chr2.3:1720586-1720605 | None:intergenic | 40.0% | |
| GCTGTCTTCATAAGTTATCC+TGG | + | chr2.3:1718938-1718957 | MS.gene86353:intron | 40.0% | |
| GGATACCCAATACCGTAAAA+TGG | - | chr2.3:1718072-1718091 | None:intergenic | 40.0% | |
| GGCAAAATCAATTATCCTGG+AGG | + | chr2.3:1718612-1718631 | MS.gene86353:intron | 40.0% | |
| TAAGTTGCAGCTTATAGCGT+AGG | + | chr2.3:1718826-1718845 | MS.gene86353:intron | 40.0% | |
| TGACTGCAGAGAAAGAACAT+GGG | - | chr2.3:1721375-1721394 | None:intergenic | 40.0% | |
| TGGTAGAAACTAGACATAGG+TGG | + | chr2.3:1719866-1719885 | MS.gene86353:intron | 40.0% | |
| TTAGGCTCTGTTTGGATGAA+CGG | + | chr2.3:1718263-1718282 | MS.gene86353:intron | 40.0% | |
| TTCATCCTCTTCAACGGAAA+AGG | + | chr2.3:1720226-1720245 | MS.gene86353:intron | 40.0% | |
| TTGGTAGAACCAAACTTGAG+TGG | - | chr2.3:1718711-1718730 | None:intergenic | 40.0% | |
| ! | AAGTGCTAGGAACATTTTGC+AGG | + | chr2.3:1720533-1720552 | MS.gene86353:CDS | 40.0% |
| ! | ACAGGTAAGTTTGTTCATGC+TGG | + | chr2.3:1720586-1720605 | MS.gene86353:intron | 40.0% |
| ! | AGTTTCCTTTTCCGTTGAAG+AGG | - | chr2.3:1720234-1720253 | None:intergenic | 40.0% |
| ! | ATGGCGACCATTCTTTTCAA+GGG | + | chr2.3:1717940-1717959 | MS.gene86353:CDS | 40.0% |
| ! | GATGGGTTTATTGACTAGAC+AGG | + | chr2.3:1719783-1719802 | MS.gene86353:intron | 40.0% |
| ! | GGAGCCAAAATTGATTCTAG+AGG | - | chr2.3:1718660-1718679 | None:intergenic | 40.0% |
| ! | TTGAAAGTGTAGACTCAGAG+TGG | + | chr2.3:1719694-1719713 | MS.gene86353:intron | 40.0% |
| ! | TTTGAAGTCATCGTGTGTGT+CGG | - | chr2.3:1719302-1719321 | None:intergenic | 40.0% |
| AAAGTGTAGACTCAGAGTGG+AGG | + | chr2.3:1719697-1719716 | MS.gene86353:intron | 45.0% | |
| AATCCACACTGTGGGAAATC+AGG | - | chr2.3:1719518-1719537 | None:intergenic | 45.0% | |
| ATTTGGCAACACCAGCATTC+CGG | - | chr2.3:1721282-1721301 | None:intergenic | 45.0% | |
| CAATCACTTGAGACTGTCTG+GGG | - | chr2.3:1719026-1719045 | None:intergenic | 45.0% | |
| CACAATCACTTGAGACTGTC+TGG | - | chr2.3:1719028-1719047 | None:intergenic | 45.0% | |
| CATACATCGCCACTCAAGTT+TGG | + | chr2.3:1718699-1718718 | MS.gene86353:intron | 45.0% | |
| CTTGAGTGGCGATGTATGTT+CGG | - | chr2.3:1718697-1718716 | None:intergenic | 45.0% | |
| GGAGAATAGATCAGATGGAG+GGG | + | chr2.3:1719923-1719942 | MS.gene86353:intron | 45.0% | |
| GTGACTGCAGAGAAAGAACA+TGG | - | chr2.3:1721376-1721395 | None:intergenic | 45.0% | |
| TAGGCTCTGTTTGGATGAAC+GGG | + | chr2.3:1718264-1718283 | MS.gene86353:intron | 45.0% | |
| TCTTGCAATGGGAACTAACC+TGG | - | chr2.3:1721470-1721489 | None:intergenic | 45.0% | |
| TGTTCTTTCTCTGCAGTCAC+TGG | + | chr2.3:1721376-1721395 | MS.gene86353:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr2.3:1720087-1720106 | None:intergenic | 45.0% |
| ! | AAGGGTTAGTACATAGGTGC+TGG | + | chr2.3:1720266-1720285 | MS.gene86353:intron | 45.0% |
| ! | ACATAGTAGTACCGGAATGC+TGG | + | chr2.3:1721268-1721287 | MS.gene86353:intron | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr2.3:1720088-1720107 | None:intergenic | 45.0% |
| AGTCGGATCACTAGAGGTAG+GGG | + | chr2.3:1719946-1719965 | MS.gene86353:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr2.3:1720086-1720105 | MS.gene86353:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr2.3:1720083-1720102 | None:intergenic | 50.0% | |
| GAGTCGGATCACTAGAGGTA+GGG | + | chr2.3:1719945-1719964 | MS.gene86353:intron | 50.0% | |
| GGTTGGAAAGCTTACACGTG+TGG | - | chr2.3:1717986-1718005 | None:intergenic | 50.0% | |
| GTACCTGATTTCCCACAGTG+TGG | + | chr2.3:1719512-1719531 | MS.gene86353:CDS | 50.0% | |
| GTTTCGGCATGTAGAGCTTG+TGG | + | chr2.3:1719888-1719907 | MS.gene86353:intron | 50.0% | |
| TACATGTTTGGTTGCCCTCC+AGG | - | chr2.3:1718630-1718649 | None:intergenic | 50.0% | |
| TAGATCAGATGGAGGGGAGT+CGG | + | chr2.3:1719929-1719948 | MS.gene86353:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr2.3:1720089-1720108 | None:intergenic | 50.0% |
| ATGTAGCCGACCCCACTTAG+TGG | + | chr2.3:1720074-1720093 | MS.gene86353:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr2.3:1720081-1720100 | MS.gene86353:intron | 55.0% | |
| GGAGTCGGATCACTAGAGGT+AGG | + | chr2.3:1719944-1719963 | MS.gene86353:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | chr2.3:1720075-1720094 | MS.gene86353:intron | 55.0% | |
| GAGGGGAGTCGGATCACTAG+AGG | + | chr2.3:1719940-1719959 | MS.gene86353:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 1717940 | 1721598 | 1717940 | ID=MS.gene86353 |
| chr2.3 | mRNA | 1717940 | 1721598 | 1717940 | ID=MS.gene86353.t1;Parent=MS.gene86353 |
| chr2.3 | exon | 1717940 | 1717990 | 1717940 | ID=MS.gene86353.t1.exon1;Parent=MS.gene86353.t1 |
| chr2.3 | CDS | 1717940 | 1717990 | 1717940 | ID=cds.MS.gene86353.t1;Parent=MS.gene86353.t1 |
| chr2.3 | exon | 1719244 | 1719375 | 1719244 | ID=MS.gene86353.t1.exon2;Parent=MS.gene86353.t1 |
| chr2.3 | CDS | 1719244 | 1719375 | 1719244 | ID=cds.MS.gene86353.t1;Parent=MS.gene86353.t1 |
| chr2.3 | exon | 1719473 | 1719572 | 1719473 | ID=MS.gene86353.t1.exon3;Parent=MS.gene86353.t1 |
| chr2.3 | CDS | 1719473 | 1719572 | 1719473 | ID=cds.MS.gene86353.t1;Parent=MS.gene86353.t1 |
| chr2.3 | exon | 1720523 | 1720589 | 1720523 | ID=MS.gene86353.t1.exon4;Parent=MS.gene86353.t1 |
| chr2.3 | CDS | 1720523 | 1720589 | 1720523 | ID=cds.MS.gene86353.t1;Parent=MS.gene86353.t1 |
| chr2.3 | exon | 1721392 | 1721470 | 1721392 | ID=MS.gene86353.t1.exon5;Parent=MS.gene86353.t1 |
| chr2.3 | CDS | 1721392 | 1721470 | 1721392 | ID=cds.MS.gene86353.t1;Parent=MS.gene86353.t1 |
| chr2.3 | exon | 1721551 | 1721598 | 1721551 | ID=MS.gene86353.t1.exon6;Parent=MS.gene86353.t1 |
| chr2.3 | CDS | 1721551 | 1721598 | 1721551 | ID=cds.MS.gene86353.t1;Parent=MS.gene86353.t1 |
| Gene Sequence |
| Protein sequence |
