Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86518.t1 | XP_024639264.1 | 99.7 | 291 | 1 | 0 | 1 | 291 | 1 | 291 | 5.20E-163 | 583.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86518.t1 | Q7DNC3 | 66.0 | 291 | 98 | 1 | 1 | 290 | 1 | 291 | 1.0e-114 | 414.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86518.t1 | A0A396HM95 | 99.7 | 291 | 1 | 0 | 1 | 291 | 1 | 291 | 3.8e-163 | 583.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene065375 | MS.gene86518 | PPI |
MS.gene033697 | MS.gene86518 | PPI |
MS.gene018097 | MS.gene86518 | PPI |
MS.gene024264 | MS.gene86518 | PPI |
MS.gene54957 | MS.gene86518 | PPI |
MS.gene40408 | MS.gene86518 | PPI |
MS.gene50480 | MS.gene86518 | PPI |
MS.gene048614 | MS.gene86518 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86518.t1 | MTR_5g024770 | 92.096 | 291 | 5 | 1 | 1 | 291 | 1 | 273 | 0.0 | 539 |
MS.gene86518.t1 | MTR_4g094578 | 62.411 | 282 | 100 | 2 | 16 | 291 | 24 | 305 | 6.41e-130 | 372 |
MS.gene86518.t1 | MTR_8g099910 | 49.296 | 284 | 140 | 1 | 12 | 291 | 64 | 347 | 1.18e-99 | 296 |
MS.gene86518.t1 | MTR_7g083790 | 49.470 | 283 | 139 | 1 | 13 | 291 | 74 | 356 | 9.05e-99 | 295 |
MS.gene86518.t1 | MTR_6g033280 | 47.857 | 280 | 142 | 1 | 16 | 291 | 58 | 337 | 2.89e-95 | 285 |
MS.gene86518.t1 | MTR_5g073040 | 27.143 | 280 | 181 | 5 | 22 | 286 | 40 | 311 | 7.91e-20 | 88.2 |
MS.gene86518.t1 | MTR_4g057850 | 25.163 | 306 | 193 | 11 | 3 | 285 | 7 | 299 | 8.87e-16 | 76.6 |
MS.gene86518.t1 | MTR_7g064980 | 26.437 | 174 | 120 | 2 | 22 | 187 | 135 | 308 | 2.33e-13 | 69.7 |
MS.gene86518.t1 | MTR_5g009500 | 26.129 | 310 | 178 | 11 | 22 | 289 | 39 | 339 | 4.18e-13 | 68.9 |
MS.gene86518.t1 | MTR_7g109135 | 29.714 | 175 | 110 | 4 | 31 | 193 | 34 | 207 | 1.16e-12 | 66.2 |
MS.gene86518.t1 | MTR_8g096050 | 25.143 | 175 | 121 | 4 | 23 | 188 | 324 | 497 | 1.26e-12 | 68.2 |
MS.gene86518.t1 | MTR_7g109135 | 29.714 | 175 | 110 | 4 | 31 | 193 | 55 | 228 | 1.86e-12 | 66.2 |
MS.gene86518.t1 | MTR_7g109135 | 29.714 | 175 | 110 | 4 | 31 | 193 | 133 | 306 | 2.07e-12 | 67.0 |
MS.gene86518.t1 | MTR_8g027975 | 24.850 | 334 | 197 | 10 | 3 | 291 | 31 | 355 | 2.87e-12 | 66.6 |
MS.gene86518.t1 | MTR_5g055410 | 27.807 | 187 | 117 | 5 | 34 | 204 | 132 | 316 | 3.49e-12 | 66.2 |
MS.gene86518.t1 | MTR_4g018750 | 29.348 | 184 | 104 | 5 | 27 | 188 | 21 | 200 | 5.91e-12 | 65.1 |
MS.gene86518.t1 | MTR_7g066690 | 25.131 | 191 | 130 | 3 | 12 | 195 | 117 | 301 | 7.16e-12 | 65.1 |
MS.gene86518.t1 | MTR_4g018750 | 29.348 | 184 | 104 | 5 | 27 | 188 | 21 | 200 | 9.20e-12 | 64.7 |
MS.gene86518.t1 | MTR_3g098460 | 23.729 | 177 | 122 | 4 | 22 | 187 | 300 | 474 | 1.06e-11 | 65.5 |
MS.gene86518.t1 | MTR_8g076760 | 28.877 | 187 | 101 | 9 | 33 | 193 | 125 | 305 | 1.17e-11 | 64.7 |
MS.gene86518.t1 | MTR_1g087840 | 27.746 | 173 | 112 | 4 | 33 | 193 | 132 | 303 | 2.05e-11 | 63.9 |
MS.gene86518.t1 | MTR_3g462140 | 26.708 | 161 | 110 | 2 | 36 | 189 | 135 | 294 | 2.15e-11 | 63.5 |
MS.gene86518.t1 | MTR_7g084400 | 25.000 | 180 | 122 | 4 | 20 | 187 | 301 | 479 | 4.18e-11 | 63.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene86518.t1 | AT2G17270 | 65.753 | 292 | 99 | 1 | 1 | 291 | 1 | 292 | 6.07e-151 | 425 |
MS.gene86518.t1 | AT3G48850 | 48.410 | 283 | 142 | 1 | 13 | 291 | 63 | 345 | 7.87e-102 | 302 |
MS.gene86518.t1 | AT5G14040 | 50.177 | 283 | 137 | 1 | 13 | 291 | 74 | 356 | 8.81e-101 | 300 |
MS.gene86518.t1 | AT1G07030 | 26.786 | 280 | 183 | 6 | 22 | 286 | 41 | 313 | 5.76e-19 | 85.9 |
MS.gene86518.t1 | AT5G01340 | 26.936 | 297 | 189 | 9 | 9 | 285 | 7 | 295 | 1.73e-18 | 84.3 |
MS.gene86518.t1 | AT2G30160 | 26.246 | 301 | 186 | 8 | 9 | 286 | 31 | 318 | 1.52e-17 | 81.6 |
MS.gene86518.t1 | AT3G53940 | 28.161 | 174 | 117 | 2 | 22 | 187 | 181 | 354 | 1.26e-15 | 76.6 |
MS.gene86518.t1 | AT2G37890 | 27.586 | 174 | 118 | 2 | 22 | 187 | 153 | 326 | 1.37e-14 | 73.6 |
MS.gene86518.t1 | AT3G20240 | 24.742 | 291 | 186 | 9 | 22 | 286 | 53 | 336 | 1.75e-12 | 67.4 |
MS.gene86518.t1 | AT4G01100 | 26.728 | 217 | 125 | 6 | 6 | 193 | 83 | 294 | 2.18e-12 | 66.6 |
MS.gene86518.t1 | AT4G01100 | 27.650 | 217 | 123 | 8 | 6 | 193 | 133 | 344 | 3.03e-12 | 66.6 |
MS.gene86518.t1 | AT5G66380 | 27.660 | 188 | 106 | 7 | 33 | 196 | 122 | 303 | 3.09e-12 | 66.2 |
MS.gene86518.t1 | AT3G54110 | 22.905 | 179 | 131 | 1 | 22 | 193 | 119 | 297 | 4.45e-12 | 65.9 |
MS.gene86518.t1 | AT4G01100 | 26.728 | 217 | 125 | 6 | 6 | 193 | 147 | 358 | 5.66e-12 | 65.9 |
MS.gene86518.t1 | AT4G03115 | 25.877 | 228 | 150 | 6 | 16 | 239 | 37 | 249 | 2.57e-11 | 63.5 |
MS.gene86518.t1 | AT5G58970 | 26.054 | 261 | 154 | 9 | 32 | 265 | 27 | 275 | 2.81e-11 | 63.5 |
MS.gene86518.t1 | AT3G21390 | 25.359 | 209 | 126 | 5 | 19 | 198 | 128 | 335 | 4.13e-11 | 63.2 |
MS.gene86518.t1 | AT3G21390 | 25.481 | 208 | 125 | 5 | 19 | 197 | 150 | 356 | 4.15e-11 | 63.2 |
MS.gene86518.t1 | AT4G03115 | 25.877 | 228 | 150 | 6 | 16 | 239 | 69 | 281 | 4.17e-11 | 63.2 |
MS.gene86518.t1 | AT5G48970 | 25.243 | 206 | 119 | 5 | 19 | 193 | 62 | 263 | 6.02e-11 | 62.0 |
MS.gene86518.t1 | AT5G48970 | 25.743 | 202 | 123 | 5 | 19 | 193 | 133 | 334 | 6.63e-11 | 62.4 |
MS.gene86518.t1 | AT2G47490 | 28.652 | 178 | 112 | 5 | 33 | 197 | 129 | 304 | 7.40e-11 | 62.4 |
Find 71 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAATACTGTAATACTTAAT+AGG | 0.188446 | 5.1:-15307566 | None:intergenic |
CCGTGGACTTGTTCCACTTT+TGG | 0.215295 | 5.1:+15308016 | MS.gene86518:CDS |
AAGACTCCTGGTAAATAAAT+TGG | 0.271424 | 5.1:-15309148 | None:intergenic |
AAATGGACATAGAGCTAAAT+TGG | 0.273532 | 5.1:-15307792 | None:intergenic |
GGATGGACAGGCAAGTTCTT+TGG | 0.324400 | 5.1:+15307641 | MS.gene86518:CDS |
TCTTCCTATTAGAATGTTGC+TGG | 0.355082 | 5.1:+15309167 | MS.gene86518:CDS |
AACCATTGCAAGGTTATAGA+AGG | 0.364536 | 5.1:-15309195 | None:intergenic |
CCAACCAGCAACATTCTAAT+AGG | 0.366589 | 5.1:-15309171 | None:intergenic |
CCTTCTGCTGCATATACCTT+TGG | 0.377619 | 5.1:-15307878 | None:intergenic |
TATTATGCCCTTTGCACCAT+TGG | 0.395910 | 5.1:+15306570 | MS.gene86518:CDS |
AAATACTGTAATACTTAATA+GGG | 0.401083 | 5.1:-15307565 | None:intergenic |
GCTCAAGGAGGATGTAGATT+TGG | 0.412818 | 5.1:+15307671 | MS.gene86518:CDS |
CATTTGAAGCTGTTAAAGTC+AGG | 0.432003 | 5.1:+15307810 | MS.gene86518:CDS |
AAAAGCCGAGAGTCTTGTTC+TGG | 0.432484 | 5.1:+15309020 | MS.gene86518:CDS |
CATGCTTTACTACGTTATTG+AGG | 0.443788 | 5.1:+15307591 | MS.gene86518:CDS |
TATGCTAAGGGCATGTTTGA+CGG | 0.461515 | 5.1:+15307851 | MS.gene86518:CDS |
CTGACTTTAACAGCTTCAAA+TGG | 0.463411 | 5.1:-15307809 | None:intergenic |
GGGAGTTTACTCCAATGTAT+TGG | 0.465784 | 5.1:+15307712 | MS.gene86518:CDS |
GGCTAGCCAATTTATTTACC+AGG | 0.471960 | 5.1:+15309142 | MS.gene86518:CDS |
CATTCCTCCAATGGTGCAAA+GGG | 0.480811 | 5.1:-15306577 | None:intergenic |
CTGTGAGATTCCTCCTTCCA+TGG | 0.485797 | 5.1:-15306532 | None:intergenic |
CCTATTAGAATGTTGCTGGT+TGG | 0.486509 | 5.1:+15309171 | MS.gene86518:CDS |
TTCTTTGGCTATGGTGCTCA+AGG | 0.488078 | 5.1:+15307656 | MS.gene86518:CDS |
ATGCTTTACTACGTTATTGA+GGG | 0.494702 | 5.1:+15307592 | MS.gene86518:CDS |
TGTTTAGCTGGTTATACCGC+TGG | 0.496234 | 5.1:+15308937 | MS.gene86518:CDS |
GAAAGAGATCATGGCGGCCA+TGG | 0.501490 | 5.1:+15306515 | None:intergenic |
GCCCTTCTATAACCTTGCAA+TGG | 0.509416 | 5.1:+15309193 | MS.gene86518:CDS |
TATGCCCTTTGCACCATTGG+AGG | 0.515475 | 5.1:+15306573 | MS.gene86518:CDS |
ACAGGCAAGTTCTTTGGCTA+TGG | 0.516450 | 5.1:+15307647 | MS.gene86518:CDS |
AGCACAACCTAGTTATGCTA+AGG | 0.519278 | 5.1:+15307838 | MS.gene86518:CDS |
CTAGGTGTGACATGTTTAGC+TGG | 0.525462 | 5.1:+15308925 | MS.gene86518:CDS |
GTCCTGTGGAAAGGATGGAC+AGG | 0.530212 | 5.1:+15307629 | MS.gene86518:CDS |
TTAACTTTCAAAACATCAAG+AGG | 0.535490 | 5.1:-15306633 | None:intergenic |
GGAATGTTTCGACCCAAAAG+TGG | 0.540620 | 5.1:-15308029 | None:intergenic |
TGCCTGTCCATCCTTTCCAC+AGG | 0.541611 | 5.1:-15307631 | None:intergenic |
ACTACGTTATTGAGGGAACA+AGG | 0.543366 | 5.1:+15307599 | MS.gene86518:CDS |
GGGCCTTCTGTCCTGTGGAA+AGG | 0.544497 | 5.1:+15307620 | MS.gene86518:CDS |
CTTCTGTCCTGTGGAAAGGA+TGG | 0.546940 | 5.1:+15307624 | MS.gene86518:CDS |
AATATACAAGACTTCTGTGC+TGG | 0.548042 | 5.1:-15307739 | None:intergenic |
GAAGCTACTATATTGTCAGC+AGG | 0.549701 | 5.1:-15308985 | None:intergenic |
GAGATCATGGCGGCCATGGA+AGG | 0.551462 | 5.1:+15306519 | None:intergenic |
GCATTCCTCCAATGGTGCAA+AGG | 0.561781 | 5.1:-15306578 | None:intergenic |
GGTTATACCGCTGGATCCGT+TGG | 0.563265 | 5.1:+15308946 | MS.gene86518:CDS |
ATTTGAAGCTGTTAAAGTCA+GGG | 0.563948 | 5.1:+15307811 | MS.gene86518:CDS |
CATCCTTTCCACAGGACAGA+AGG | 0.566116 | 5.1:-15307623 | None:intergenic |
AGCACTGAGCATTCCTCCAA+TGG | 0.567164 | 5.1:-15306586 | None:intergenic |
CATGTTTGACGGCTTTCCAA+AGG | 0.568484 | 5.1:+15307862 | MS.gene86518:CDS |
ATTGGAGGAATGCTCAGTGC+TGG | 0.571365 | 5.1:+15306588 | MS.gene86518:CDS |
TGTTCAAAAGCTCAACAGCT+AGG | 0.578381 | 5.1:+15308907 | MS.gene86518:CDS |
AACAAGGGCCTTCTGTCCTG+TGG | 0.579264 | 5.1:+15307615 | MS.gene86518:CDS |
CATTCTAATAGGAAGACTCC+TGG | 0.594584 | 5.1:-15309160 | None:intergenic |
ATCATGGCGGCCATGGAAGG+AGG | 0.596330 | 5.1:+15306522 | None:intergenic |
GTGCAAAGGGCATAATACCT+TGG | 0.599144 | 5.1:-15306564 | None:intergenic |
GTGCTGGTCTACCAATACAT+TGG | 0.601303 | 5.1:-15307723 | None:intergenic |
TTTGGCTATGGTGCTCAAGG+AGG | 0.604197 | 5.1:+15307659 | MS.gene86518:CDS |
ACCATTGCAAGGTTATAGAA+GGG | 0.611334 | 5.1:-15309194 | None:intergenic |
CCAAAGGTATATGCAGCAGA+AGG | 0.616204 | 5.1:+15307878 | MS.gene86518:CDS |
AAATACCAGAACAAGACTCT+CGG | 0.618357 | 5.1:-15309025 | None:intergenic |
CTACGTTATTGAGGGAACAA+GGG | 0.623719 | 5.1:+15307600 | MS.gene86518:CDS |
GCACAACCTAGTTATGCTAA+GGG | 0.624854 | 5.1:+15307839 | MS.gene86518:CDS |
CATGGAAGGAGGAATCTCAC+AGG | 0.638936 | 5.1:+15306533 | MS.gene86518:CDS |
AGGAGTTGTAGCAAGATGAG+TGG | 0.639871 | 5.1:-15306613 | None:intergenic |
GAATGTTGAGAACATAACCA+TGG | 0.644534 | 5.1:-15308830 | None:intergenic |
AACATGCCCTTAGCATAACT+AGG | 0.649459 | 5.1:-15307845 | None:intergenic |
ATTAGAAACAAAGCTACCAA+CGG | 0.659190 | 5.1:-15308962 | None:intergenic |
AAAGCTACCAACGGATCCAG+CGG | 0.665155 | 5.1:-15308953 | None:intergenic |
TATGCAGCAGAAGGCGCACG+AGG | 0.673682 | 5.1:+15307887 | MS.gene86518:CDS |
CCAAAAGTGGAACAAGTCCA+CGG | 0.677014 | 5.1:-15308016 | None:intergenic |
TCTCACAGGAATTAACGCCA+AGG | 0.701621 | 5.1:+15306547 | MS.gene86518:CDS |
ATGCAGCAGAAGGCGCACGA+GGG | 0.753181 | 5.1:+15307888 | MS.gene86518:CDS |
ACTGCTTGCAGATTCTACCG+TGG | 0.755591 | 5.1:+15307999 | MS.gene86518:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAGAAAAGATTAATTTTTTT+GGG | + | chr5.1:15307227-15307246 | MS.gene86518:intron | 10.0% |
!!! | GTTTTATCATATTTAATTAA+TGG | + | chr5.1:15307513-15307532 | MS.gene86518:intron | 10.0% |
!!! | TTTTTAAATATAAAGTTGTA+TGG | - | chr5.1:15308106-15308125 | None:intergenic | 10.0% |
!! | AAATACTGTAATACTTAATA+GGG | - | chr5.1:15307568-15307587 | None:intergenic | 15.0% |
!! | ATAAAAAATGTGGAAAAAAT+TGG | + | chr5.1:15307288-15307307 | MS.gene86518:intron | 15.0% |
!! | ATATATTGTTACTAAACATT+AGG | - | chr5.1:15306820-15306839 | None:intergenic | 15.0% |
!! | ATGTTTAGTAACAATATATT+TGG | + | chr5.1:15307127-15307146 | MS.gene86518:intron | 15.0% |
!! | TAAAAAATGTGGAAAAAATT+GGG | + | chr5.1:15307289-15307308 | MS.gene86518:intron | 15.0% |
!! | TATATTGTTACTAAACATTA+GGG | - | chr5.1:15306819-15306838 | None:intergenic | 15.0% |
!! | TTATCATATTTAATTAATGG+AGG | + | chr5.1:15307516-15307535 | MS.gene86518:intron | 15.0% |
!!! | AGAAAAGATTAATTTTTTTG+GGG | + | chr5.1:15307228-15307247 | MS.gene86518:intron | 15.0% |
!!! | GAAAAACATTAGTTTTTTTT+TGG | + | chr5.1:15306997-15307016 | MS.gene86518:intron | 15.0% |
!!! | GAAGAAAAGATTAATTTTTT+TGG | + | chr5.1:15307226-15307245 | MS.gene86518:intron | 15.0% |
!! | AAAAATCACTCAAACATAAA+GGG | - | chr5.1:15307257-15307276 | None:intergenic | 20.0% |
!! | AACAATATATGTGGAAAAAT+AGG | + | chr5.1:15306830-15306849 | MS.gene86518:intron | 20.0% |
!! | AATCAAATGAAGAAAATTTC+CGG | - | chr5.1:15308342-15308361 | None:intergenic | 20.0% |
!! | ATAAATTGCTACTAAACAAT+AGG | - | chr5.1:15306969-15306988 | None:intergenic | 20.0% |
!! | ATACTAATGCATAAAAAATG+TGG | + | chr5.1:15307278-15307297 | MS.gene86518:intron | 20.0% |
!! | ATGTTTAGTAACAATATATG+TGG | + | chr5.1:15306821-15306840 | MS.gene86518:intron | 20.0% |
!! | GAAATACTGTAATACTTAAT+AGG | - | chr5.1:15307569-15307588 | None:intergenic | 20.0% |
!! | TAAATTGCTACTAAACAATA+GGG | - | chr5.1:15306968-15306987 | None:intergenic | 20.0% |
!! | TTTGGTATCTTTATCATATT+CGG | + | chr5.1:15308304-15308323 | MS.gene86518:intron | 20.0% |
!!! | ATGAAAAATCATTTTCACAA+AGG | - | chr5.1:15307464-15307483 | None:intergenic | 20.0% |
!!! | CTTTTTTAGTTTGTTTGATT+AGG | + | chr5.1:15306724-15306743 | MS.gene86518:intron | 20.0% |
!!! | GTATTTTCTTATGAACATTA+GGG | - | chr5.1:15307203-15307222 | None:intergenic | 20.0% |
!!! | TGAAAAATCATTTTCACAAA+GGG | - | chr5.1:15307463-15307482 | None:intergenic | 20.0% |
!!! | TTGGATAAACAGTTTTTTTT+GGG | + | chr5.1:15307146-15307165 | MS.gene86518:intron | 20.0% |
!!! | TTTGGATAAACAGTTTTTTT+TGG | + | chr5.1:15307145-15307164 | MS.gene86518:intron | 20.0% |
! | AAAAGAATAAGCTGAATACT+TGG | - | chr5.1:15308513-15308532 | None:intergenic | 25.0% |
! | AAAATCACTCTCAAACATAA+AGG | - | chr5.1:15306871-15306890 | None:intergenic | 25.0% |
! | AAATCACTCTCAAACATAAA+GGG | - | chr5.1:15306870-15306889 | None:intergenic | 25.0% |
! | AAATCATACTCAAACACAAA+AGG | - | chr5.1:15306792-15306811 | None:intergenic | 25.0% |
! | AATCATACTCAAACACAAAA+GGG | - | chr5.1:15306791-15306810 | None:intergenic | 25.0% |
! | AATGTTCATAAGAAAATACG+TGG | + | chr5.1:15307204-15307223 | MS.gene86518:intron | 25.0% |
! | AATTCATTCTCATCCATAAA+AGG | - | chr5.1:15307098-15307117 | None:intergenic | 25.0% |
! | ATTCATTCTCATCCATAAAA+GGG | - | chr5.1:15307097-15307116 | None:intergenic | 25.0% |
! | CAAGAGATAATGAAATTACA+TGG | - | chr5.1:15308053-15308072 | None:intergenic | 25.0% |
! | CAAGATCAATTCTAAACATT+AGG | - | chr5.1:15307487-15307506 | None:intergenic | 25.0% |
! | CAATGTTGTCAAAAGAAAAA+AGG | + | chr5.1:15308879-15308898 | MS.gene86518:CDS | 25.0% |
! | CATACAGTTATATTATATGC+TGG | - | chr5.1:15308186-15308205 | None:intergenic | 25.0% |
! | GAAAAATCACTCAAACATAA+AGG | - | chr5.1:15307258-15307277 | None:intergenic | 25.0% |
! | GGTAAAGAAAGATTTCAATA+CGG | + | chr5.1:15307909-15307928 | MS.gene86518:intron | 25.0% |
! | GTGGGAAAATTGAATATTTA+TGG | + | chr5.1:15307068-15307087 | MS.gene86518:intron | 25.0% |
! | TATGCTTAAAGATGTTTAGT+GGG | + | chr5.1:15308202-15308221 | MS.gene86518:intron | 25.0% |
! | TATTTAATCTTGCACTAGTT+TGG | + | chr5.1:15308079-15308098 | MS.gene86518:intron | 25.0% |
! | TGTTTAGTAGCAATTTATGT+GGG | + | chr5.1:15306971-15306990 | MS.gene86518:intron | 25.0% |
! | TTAACTTTCAAAACATCAAG+AGG | - | chr5.1:15306636-15306655 | None:intergenic | 25.0% |
! | TTGTTTAGTAGCAATTTATG+TGG | + | chr5.1:15306970-15306989 | MS.gene86518:intron | 25.0% |
!! | AAGTATTCAGCTTATTCTTT+TGG | + | chr5.1:15308512-15308531 | MS.gene86518:intron | 25.0% |
!! | ATTTAATCTTGCACTAGTTT+GGG | + | chr5.1:15308080-15308099 | MS.gene86518:intron | 25.0% |
!! | CGTATTTTCTTATGAACATT+AGG | - | chr5.1:15307204-15307223 | None:intergenic | 25.0% |
!! | TATTTATGGTTACCCTTTTA+TGG | + | chr5.1:15307082-15307101 | MS.gene86518:intron | 25.0% |
!! | TGGTCTGTATGAATATTTTA+AGG | + | chr5.1:15307691-15307710 | MS.gene86518:CDS | 25.0% |
!! | TTTCTCTTTGGTATATGTTT+TGG | + | chr5.1:15308286-15308305 | MS.gene86518:intron | 25.0% |
!! | TTTGATTAGGTTGTAGAAAT+GGG | + | chr5.1:15306737-15306756 | MS.gene86518:intron | 25.0% |
!! | TTTTCAGCTAAAACATCTTT+AGG | - | chr5.1:15308239-15308258 | None:intergenic | 25.0% |
!!! | AACTTCTTTAAAACTAAGCA+TGG | + | chr5.1:15308619-15308638 | MS.gene86518:intron | 25.0% |
!!! | GGTCTGTATGAATATTTTAA+GGG | + | chr5.1:15307692-15307711 | MS.gene86518:CDS | 25.0% |
!!! | GTGGAAAAGTTGAAATTTTT+TGG | + | chr5.1:15306911-15306930 | MS.gene86518:intron | 25.0% |
AAAATTTCCGGACATTAAGT+AGG | - | chr5.1:15308330-15308349 | None:intergenic | 30.0% | |
AAAGATGTTTAGTGGGAAAT+TGG | + | chr5.1:15308209-15308228 | MS.gene86518:intron | 30.0% | |
AAATCATTCTCATCCATGAA+AGG | - | chr5.1:15306941-15306960 | None:intergenic | 30.0% | |
AAATGGACATAGAGCTAAAT+TGG | - | chr5.1:15307795-15307814 | None:intergenic | 30.0% | |
AACATAACTCTCAAGCATAA+AGG | - | chr5.1:15307027-15307046 | None:intergenic | 30.0% | |
AACTGTCCAACAAAAAAAAC+AGG | - | chr5.1:15308809-15308828 | None:intergenic | 30.0% | |
AAGACTCCTGGTAAATAAAT+TGG | - | chr5.1:15309151-15309170 | None:intergenic | 30.0% | |
ACATAACTCTCAAGCATAAA+GGG | - | chr5.1:15307026-15307045 | None:intergenic | 30.0% | |
ACTTGATTGATCAGGTTATA+GGG | + | chr5.1:15308408-15308427 | MS.gene86518:intron | 30.0% | |
AGAGTTATGTTTCACACTAA+TGG | + | chr5.1:15307036-15307055 | MS.gene86518:intron | 30.0% | |
AGCTATAAGTCTATAACTCA+TGG | + | chr5.1:15308752-15308771 | MS.gene86518:intron | 30.0% | |
ATATACCAAAGAGAAAAGCA+AGG | - | chr5.1:15308282-15308301 | None:intergenic | 30.0% | |
ATGCTTTACTACGTTATTGA+GGG | + | chr5.1:15307592-15307611 | MS.gene86518:CDS | 30.0% | |
ATTAGAAACAAAGCTACCAA+CGG | - | chr5.1:15308965-15308984 | None:intergenic | 30.0% | |
ATTGCGTTACACTTATTCTA+TGG | + | chr5.1:15309100-15309119 | MS.gene86518:intron | 30.0% | |
CATGAAAACTATCTTTATGC+TGG | + | chr5.1:15308135-15308154 | MS.gene86518:intron | 30.0% | |
GGTTAATACAGAACAAAATG+TGG | + | chr5.1:15307415-15307434 | MS.gene86518:intron | 30.0% | |
GTATGCTTAAAGATGTTTAG+TGG | + | chr5.1:15308201-15308220 | MS.gene86518:intron | 30.0% | |
TACTTGATTGATCAGGTTAT+AGG | + | chr5.1:15308407-15308426 | MS.gene86518:intron | 30.0% | |
TGTTGTCAAAAGAAAAAAGG+AGG | + | chr5.1:15308882-15308901 | MS.gene86518:CDS | 30.0% | |
! | ACACTAATGGACAAAAAATG+TGG | + | chr5.1:15307049-15307068 | MS.gene86518:intron | 30.0% |
! | ACACTAATGGACAAAATATG+TGG | + | chr5.1:15306892-15306911 | MS.gene86518:intron | 30.0% |
! | ATTTGAAGCTGTTAAAGTCA+GGG | + | chr5.1:15307811-15307830 | MS.gene86518:CDS | 30.0% |
! | CACTAATGGACAAAAAATGT+GGG | + | chr5.1:15307050-15307069 | MS.gene86518:intron | 30.0% |
! | GTTTGATTAGGTTGTAGAAA+TGG | + | chr5.1:15306736-15306755 | MS.gene86518:intron | 30.0% |
! | TACGACACTATCAAAGTTTT+AGG | + | chr5.1:15309222-15309241 | MS.gene86518:CDS | 30.0% |
! | TTCATGGATGAGAATGATTT+TGG | + | chr5.1:15306941-15306960 | MS.gene86518:intron | 30.0% |
! | TTGATTAGGTTGTAGAAATG+GGG | + | chr5.1:15306738-15306757 | MS.gene86518:intron | 30.0% |
! | TTGTTAGTTTATCAACCAAC+AGG | - | chr5.1:15308443-15308462 | None:intergenic | 30.0% |
!! | TTAGCTTTTATAAGCTAAGC+AGG | + | chr5.1:15308487-15308506 | MS.gene86518:intron | 30.0% |
!!! | ATTTTTTGGCTAACCTTTCA+TGG | + | chr5.1:15306925-15306944 | MS.gene86518:intron | 30.0% |
!!! | GAGTATCCTGTTTTTTTTGT+TGG | + | chr5.1:15308800-15308819 | MS.gene86518:intron | 30.0% |
!!! | TGTTTTGAAAGTTAACATGC+AGG | + | chr5.1:15306641-15306660 | MS.gene86518:CDS | 30.0% |
AAATACCAGAACAAGACTCT+CGG | - | chr5.1:15309028-15309047 | None:intergenic | 35.0% | |
AACCATTGCAAGGTTATAGA+AGG | - | chr5.1:15309198-15309217 | None:intergenic | 35.0% | |
AATATACAAGACTTCTGTGC+TGG | - | chr5.1:15307742-15307761 | None:intergenic | 35.0% | |
ACAAATTTCATCACCATCAC+AGG | - | chr5.1:15308716-15308735 | None:intergenic | 35.0% | |
ACCAATGATTGTTCCAGTTA+GGG | - | chr5.1:15307331-15307350 | None:intergenic | 35.0% | |
ACCATTGCAAGGTTATAGAA+GGG | - | chr5.1:15309197-15309216 | None:intergenic | 35.0% | |
AGCTGAACTCTTAGATTATC+AGG | + | chr5.1:15307370-15307389 | MS.gene86518:intron | 35.0% | |
CACTATTACAACATAGTCAC+AGG | - | chr5.1:15308562-15308581 | None:intergenic | 35.0% | |
CATGCTTTACTACGTTATTG+AGG | + | chr5.1:15307591-15307610 | MS.gene86518:CDS | 35.0% | |
CTGACTTTAACAGCTTCAAA+TGG | - | chr5.1:15307812-15307831 | None:intergenic | 35.0% | |
GAAGATTTCACAGGATAGAA+TGG | - | chr5.1:15308164-15308183 | None:intergenic | 35.0% | |
GAATGTTGAGAACATAACCA+TGG | - | chr5.1:15308833-15308852 | None:intergenic | 35.0% | |
GAGAAACTACTTGATTGATC+AGG | + | chr5.1:15308400-15308419 | MS.gene86518:intron | 35.0% | |
GAGTGTTCAGTATATTCTTC+TGG | + | chr5.1:15308643-15308662 | MS.gene86518:intron | 35.0% | |
GCTGAACTCTTAGATTATCA+GGG | + | chr5.1:15307371-15307390 | MS.gene86518:intron | 35.0% | |
GTGGAAAACTTGACTATCTT+TGG | + | chr5.1:15307434-15307453 | MS.gene86518:intron | 35.0% | |
TAGTAGCAATTTATGTGGGA+TGG | + | chr5.1:15306975-15306994 | MS.gene86518:intron | 35.0% | |
TATATGCTGGAAGATTTCAC+AGG | - | chr5.1:15308173-15308192 | None:intergenic | 35.0% | |
TCTTCCTATTAGAATGTTGC+TGG | + | chr5.1:15309167-15309186 | MS.gene86518:CDS | 35.0% | |
TTATTGTTAGTCACATGCTG+AGG | + | chr5.1:15308374-15308393 | MS.gene86518:intron | 35.0% | |
! | CATTTGAAGCTGTTAAAGTC+AGG | + | chr5.1:15307810-15307829 | MS.gene86518:CDS | 35.0% |
! | GAGAGTGATTTTCACACTAA+TGG | + | chr5.1:15306879-15306898 | MS.gene86518:intron | 35.0% |
! | TGATTAGGTTGTAGAAATGG+GGG | + | chr5.1:15306739-15306758 | MS.gene86518:intron | 35.0% |
! | TTTTTGTTGGACAGTTTCCA+TGG | + | chr5.1:15308813-15308832 | MS.gene86518:intron | 35.0% |
!!! | GACACTATCAAAGTTTTAGG+TGG | + | chr5.1:15309225-15309244 | MS.gene86518:CDS | 35.0% |
!!! | TTTTTTTGGGCTACCCTTTT+AGG | + | chr5.1:15307159-15307178 | MS.gene86518:intron | 35.0% |
AAATCACTCCCAGACCTAAA+AGG | - | chr5.1:15307176-15307195 | None:intergenic | 40.0% | |
AACATGCCCTTAGCATAACT+AGG | - | chr5.1:15307848-15307867 | None:intergenic | 40.0% | |
AATCACTCCCAGACCTAAAA+GGG | - | chr5.1:15307175-15307194 | None:intergenic | 40.0% | |
AATCTAAGAGTTCAGCTCAG+AGG | - | chr5.1:15307367-15307386 | None:intergenic | 40.0% | |
ACCCTAACTGGAACAATCAT+TGG | + | chr5.1:15307327-15307346 | MS.gene86518:intron | 40.0% | |
ACTACGTTATTGAGGGAACA+AGG | + | chr5.1:15307599-15307618 | MS.gene86518:CDS | 40.0% | |
AGCACAACCTAGTTATGCTA+AGG | + | chr5.1:15307838-15307857 | MS.gene86518:CDS | 40.0% | |
CATTCTAATAGGAAGACTCC+TGG | - | chr5.1:15309163-15309182 | None:intergenic | 40.0% | |
CCAACCAGCAACATTCTAAT+AGG | - | chr5.1:15309174-15309193 | None:intergenic | 40.0% | |
CCTATTAGAATGTTGCTGGT+TGG | + | chr5.1:15309171-15309190 | MS.gene86518:CDS | 40.0% | |
CGTTACACTTATTCTATGGC+AGG | + | chr5.1:15309104-15309123 | MS.gene86518:intron | 40.0% | |
CTACGTTATTGAGGGAACAA+GGG | + | chr5.1:15307600-15307619 | MS.gene86518:CDS | 40.0% | |
CTTGATGTGCATCTGTCTTT+AGG | + | chr5.1:15307942-15307961 | MS.gene86518:intron | 40.0% | |
GAAGCTACTATATTGTCAGC+AGG | - | chr5.1:15308988-15309007 | None:intergenic | 40.0% | |
GACCAATGATTGTTCCAGTT+AGG | - | chr5.1:15307332-15307351 | None:intergenic | 40.0% | |
GCACAACCTAGTTATGCTAA+GGG | + | chr5.1:15307839-15307858 | MS.gene86518:CDS | 40.0% | |
GGCAGGCTATCAGAAAAATT+GGG | + | chr5.1:15309121-15309140 | MS.gene86518:intron | 40.0% | |
GGGAGTTTACTCCAATGTAT+TGG | + | chr5.1:15307712-15307731 | MS.gene86518:CDS | 40.0% | |
GTCGTAGAAAAACCATTGCA+AGG | - | chr5.1:15309208-15309227 | None:intergenic | 40.0% | |
TATTATGCCCTTTGCACCAT+TGG | + | chr5.1:15306570-15306589 | MS.gene86518:CDS | 40.0% | |
TATTCGGCCTACTTAATGTC+CGG | + | chr5.1:15308320-15308339 | MS.gene86518:intron | 40.0% | |
TGCTTCTTTGCAACTGCATT+TGG | + | chr5.1:15309047-15309066 | MS.gene86518:intron | 40.0% | |
TGGCAGGCTATCAGAAAAAT+TGG | + | chr5.1:15309120-15309139 | MS.gene86518:intron | 40.0% | |
TGTTCAAAAGCTCAACAGCT+AGG | + | chr5.1:15308907-15308926 | MS.gene86518:CDS | 40.0% | |
TTCTGAGTTTGAACCCTAAC+TGG | + | chr5.1:15307315-15307334 | MS.gene86518:intron | 40.0% | |
TTGTGACTAAGTTCCTGTGA+TGG | + | chr5.1:15308700-15308719 | MS.gene86518:intron | 40.0% | |
! | GGCTAGCCAATTTATTTACC+AGG | + | chr5.1:15309142-15309161 | MS.gene86518:CDS | 40.0% |
! | TATGCTAAGGGCATGTTTGA+CGG | + | chr5.1:15307851-15307870 | MS.gene86518:CDS | 40.0% |
!! | TTACGCCTTGCTTTTCTCTT+TGG | + | chr5.1:15308274-15308293 | MS.gene86518:intron | 40.0% |
ACAGGCAAGTTCTTTGGCTA+TGG | + | chr5.1:15307647-15307666 | MS.gene86518:CDS | 45.0% | |
AGGAGTTGTAGCAAGATGAG+TGG | - | chr5.1:15306616-15306635 | None:intergenic | 45.0% | |
ATAGGGCAGTAGTTACCTGT+TGG | + | chr5.1:15308425-15308444 | MS.gene86518:intron | 45.0% | |
ATTATCAGGGCCGTTTCTCT+AGG | + | chr5.1:15307384-15307403 | MS.gene86518:intron | 45.0% | |
CATGTTTGACGGCTTTCCAA+AGG | + | chr5.1:15307862-15307881 | MS.gene86518:CDS | 45.0% | |
CATTCCTCCAATGGTGCAAA+GGG | - | chr5.1:15306580-15306599 | None:intergenic | 45.0% | |
CCAAAAGTGGAACAAGTCCA+CGG | - | chr5.1:15308019-15308038 | None:intergenic | 45.0% | |
CCTTCTGCTGCATATACCTT+TGG | - | chr5.1:15307881-15307900 | None:intergenic | 45.0% | |
CTAGGTGTGACATGTTTAGC+TGG | + | chr5.1:15308925-15308944 | MS.gene86518:CDS | 45.0% | |
GAAGTGATGCTGTCACATGT+AGG | + | chr5.1:15307538-15307557 | MS.gene86518:intron | 45.0% | |
GCCCTTCTATAACCTTGCAA+TGG | + | chr5.1:15309193-15309212 | MS.gene86518:CDS | 45.0% | |
GCTCAAGGAGGATGTAGATT+TGG | + | chr5.1:15307671-15307690 | MS.gene86518:CDS | 45.0% | |
GGAATGTTTCGACCCAAAAG+TGG | - | chr5.1:15308032-15308051 | None:intergenic | 45.0% | |
TCTCACAGGAATTAACGCCA+AGG | + | chr5.1:15306547-15306566 | MS.gene86518:CDS | 45.0% | |
TGTTTAGCTGGTTATACCGC+TGG | + | chr5.1:15308937-15308956 | MS.gene86518:CDS | 45.0% | |
TTCTTTGGCTATGGTGCTCA+AGG | + | chr5.1:15307656-15307675 | MS.gene86518:CDS | 45.0% | |
! | CCAAAGGTATATGCAGCAGA+AGG | + | chr5.1:15307878-15307897 | MS.gene86518:CDS | 45.0% |
! | GTGCAAAGGGCATAATACCT+TGG | - | chr5.1:15306567-15306586 | None:intergenic | 45.0% |
! | GTGCTGGTCTACCAATACAT+TGG | - | chr5.1:15307726-15307745 | None:intergenic | 45.0% |
!! | AAAAGCCGAGAGTCTTGTTC+TGG | + | chr5.1:15309020-15309039 | MS.gene86518:CDS | 45.0% |
!! | CGTGGACTTGTTCCACTTTT+GGG | + | chr5.1:15308017-15308036 | MS.gene86518:CDS | 45.0% |
!! | AAGAAATTAAATAAAAAAAA+TGG | - | chr5.1:15306685-15306704 | None:intergenic | 5.0% |
AAAGCTACCAACGGATCCAG+CGG | - | chr5.1:15308956-15308975 | None:intergenic | 50.0% | |
ACTGCTTGCAGATTCTACCG+TGG | + | chr5.1:15307999-15308018 | MS.gene86518:intron | 50.0% | |
AGGTTGTAGAAATGGGGGAG+TGG | + | chr5.1:15306744-15306763 | MS.gene86518:intron | 50.0% | |
ATTGGAGGAATGCTCAGTGC+TGG | + | chr5.1:15306588-15306607 | MS.gene86518:CDS | 50.0% | |
CATCCTTTCCACAGGACAGA+AGG | - | chr5.1:15307626-15307645 | None:intergenic | 50.0% | |
CATGGAAGGAGGAATCTCAC+AGG | + | chr5.1:15306533-15306552 | MS.gene86518:CDS | 50.0% | |
CCCTCCAGTTCCTAGAGAAA+CGG | - | chr5.1:15307397-15307416 | None:intergenic | 50.0% | |
CTGTGAGATTCCTCCTTCCA+TGG | - | chr5.1:15306535-15306554 | None:intergenic | 50.0% | |
CTTCTGTCCTGTGGAAAGGA+TGG | + | chr5.1:15307624-15307643 | MS.gene86518:CDS | 50.0% | |
GCATTCCTCCAATGGTGCAA+AGG | - | chr5.1:15306581-15306600 | None:intergenic | 50.0% | |
GGATGGACAGGCAAGTTCTT+TGG | + | chr5.1:15307641-15307660 | MS.gene86518:CDS | 50.0% | |
TATGCCCTTTGCACCATTGG+AGG | + | chr5.1:15306573-15306592 | MS.gene86518:CDS | 50.0% | |
TTTGGCTATGGTGCTCAAGG+AGG | + | chr5.1:15307659-15307678 | MS.gene86518:CDS | 50.0% | |
! | AGCACTGAGCATTCCTCCAA+TGG | - | chr5.1:15306589-15306608 | None:intergenic | 50.0% |
! | CCGTTTCTCTAGGAACTGGA+GGG | + | chr5.1:15307394-15307413 | MS.gene86518:intron | 50.0% |
!! | CCGTGGACTTGTTCCACTTT+TGG | + | chr5.1:15308016-15308035 | MS.gene86518:CDS | 50.0% |
!! | TGGGCTACCCTTTTAGGTCT+GGG | + | chr5.1:15307165-15307184 | MS.gene86518:intron | 50.0% |
!! | TTGGGCTACCCTTTTAGGTC+TGG | + | chr5.1:15307164-15307183 | MS.gene86518:intron | 50.0% |
AACAAGGGCCTTCTGTCCTG+TGG | + | chr5.1:15307615-15307634 | MS.gene86518:CDS | 55.0% | |
GGTTATACCGCTGGATCCGT+TGG | + | chr5.1:15308946-15308965 | MS.gene86518:CDS | 55.0% | |
GTCCTGTGGAAAGGATGGAC+AGG | + | chr5.1:15307629-15307648 | MS.gene86518:CDS | 55.0% | |
TGCCTGTCCATCCTTTCCAC+AGG | - | chr5.1:15307634-15307653 | None:intergenic | 55.0% | |
! | AGGGCCGTTTCTCTAGGAAC+TGG | + | chr5.1:15307390-15307409 | MS.gene86518:intron | 55.0% |
! | GCCGTTTCTCTAGGAACTGG+AGG | + | chr5.1:15307393-15307412 | MS.gene86518:intron | 55.0% |
GGGCCTTCTGTCCTGTGGAA+AGG | + | chr5.1:15307620-15307639 | MS.gene86518:CDS | 60.0% | |
! | ATGCAGCAGAAGGCGCACGA+GGG | + | chr5.1:15307888-15307907 | MS.gene86518:CDS | 60.0% |
! | TATGCAGCAGAAGGCGCACG+AGG | + | chr5.1:15307887-15307906 | MS.gene86518:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 15306525 | 15309254 | 15306525 | ID=MS.gene86518 |
chr5.1 | mRNA | 15306525 | 15309254 | 15306525 | ID=MS.gene86518.t1;Parent=MS.gene86518 |
chr5.1 | exon | 15306525 | 15306662 | 15306525 | ID=MS.gene86518.t1.exon1;Parent=MS.gene86518.t1 |
chr5.1 | CDS | 15306525 | 15306662 | 15306525 | ID=cds.MS.gene86518.t1;Parent=MS.gene86518.t1 |
chr5.1 | exon | 15307560 | 15307909 | 15307560 | ID=MS.gene86518.t1.exon2;Parent=MS.gene86518.t1 |
chr5.1 | CDS | 15307560 | 15307909 | 15307560 | ID=cds.MS.gene86518.t1;Parent=MS.gene86518.t1 |
chr5.1 | exon | 15308010 | 15308053 | 15308010 | ID=MS.gene86518.t1.exon3;Parent=MS.gene86518.t1 |
chr5.1 | CDS | 15308010 | 15308053 | 15308010 | ID=cds.MS.gene86518.t1;Parent=MS.gene86518.t1 |
chr5.1 | exon | 15308827 | 15309041 | 15308827 | ID=MS.gene86518.t1.exon4;Parent=MS.gene86518.t1 |
chr5.1 | CDS | 15308827 | 15309041 | 15308827 | ID=cds.MS.gene86518.t1;Parent=MS.gene86518.t1 |
chr5.1 | exon | 15309126 | 15309254 | 15309126 | ID=MS.gene86518.t1.exon5;Parent=MS.gene86518.t1 |
chr5.1 | CDS | 15309126 | 15309254 | 15309126 | ID=cds.MS.gene86518.t1;Parent=MS.gene86518.t1 |
Gene Sequence |
Protein sequence |