AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene86518


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86518.t1 MTR_5g024770 92.096 291 5 1 1 291 1 273 0.0 539
MS.gene86518.t1 MTR_4g094578 62.411 282 100 2 16 291 24 305 6.41e-130 372
MS.gene86518.t1 MTR_8g099910 49.296 284 140 1 12 291 64 347 1.18e-99 296
MS.gene86518.t1 MTR_7g083790 49.470 283 139 1 13 291 74 356 9.05e-99 295
MS.gene86518.t1 MTR_6g033280 47.857 280 142 1 16 291 58 337 2.89e-95 285
MS.gene86518.t1 MTR_5g073040 27.143 280 181 5 22 286 40 311 7.91e-20 88.2
MS.gene86518.t1 MTR_4g057850 25.163 306 193 11 3 285 7 299 8.87e-16 76.6
MS.gene86518.t1 MTR_7g064980 26.437 174 120 2 22 187 135 308 2.33e-13 69.7
MS.gene86518.t1 MTR_5g009500 26.129 310 178 11 22 289 39 339 4.18e-13 68.9
MS.gene86518.t1 MTR_7g109135 29.714 175 110 4 31 193 34 207 1.16e-12 66.2
MS.gene86518.t1 MTR_8g096050 25.143 175 121 4 23 188 324 497 1.26e-12 68.2
MS.gene86518.t1 MTR_7g109135 29.714 175 110 4 31 193 55 228 1.86e-12 66.2
MS.gene86518.t1 MTR_7g109135 29.714 175 110 4 31 193 133 306 2.07e-12 67.0
MS.gene86518.t1 MTR_8g027975 24.850 334 197 10 3 291 31 355 2.87e-12 66.6
MS.gene86518.t1 MTR_5g055410 27.807 187 117 5 34 204 132 316 3.49e-12 66.2
MS.gene86518.t1 MTR_4g018750 29.348 184 104 5 27 188 21 200 5.91e-12 65.1
MS.gene86518.t1 MTR_7g066690 25.131 191 130 3 12 195 117 301 7.16e-12 65.1
MS.gene86518.t1 MTR_4g018750 29.348 184 104 5 27 188 21 200 9.20e-12 64.7
MS.gene86518.t1 MTR_3g098460 23.729 177 122 4 22 187 300 474 1.06e-11 65.5
MS.gene86518.t1 MTR_8g076760 28.877 187 101 9 33 193 125 305 1.17e-11 64.7
MS.gene86518.t1 MTR_1g087840 27.746 173 112 4 33 193 132 303 2.05e-11 63.9
MS.gene86518.t1 MTR_3g462140 26.708 161 110 2 36 189 135 294 2.15e-11 63.5
MS.gene86518.t1 MTR_7g084400 25.000 180 122 4 20 187 301 479 4.18e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene86518.t1 AT2G17270 65.753 292 99 1 1 291 1 292 6.07e-151 425
MS.gene86518.t1 AT3G48850 48.410 283 142 1 13 291 63 345 7.87e-102 302
MS.gene86518.t1 AT5G14040 50.177 283 137 1 13 291 74 356 8.81e-101 300
MS.gene86518.t1 AT1G07030 26.786 280 183 6 22 286 41 313 5.76e-19 85.9
MS.gene86518.t1 AT5G01340 26.936 297 189 9 9 285 7 295 1.73e-18 84.3
MS.gene86518.t1 AT2G30160 26.246 301 186 8 9 286 31 318 1.52e-17 81.6
MS.gene86518.t1 AT3G53940 28.161 174 117 2 22 187 181 354 1.26e-15 76.6
MS.gene86518.t1 AT2G37890 27.586 174 118 2 22 187 153 326 1.37e-14 73.6
MS.gene86518.t1 AT3G20240 24.742 291 186 9 22 286 53 336 1.75e-12 67.4
MS.gene86518.t1 AT4G01100 26.728 217 125 6 6 193 83 294 2.18e-12 66.6
MS.gene86518.t1 AT4G01100 27.650 217 123 8 6 193 133 344 3.03e-12 66.6
MS.gene86518.t1 AT5G66380 27.660 188 106 7 33 196 122 303 3.09e-12 66.2
MS.gene86518.t1 AT3G54110 22.905 179 131 1 22 193 119 297 4.45e-12 65.9
MS.gene86518.t1 AT4G01100 26.728 217 125 6 6 193 147 358 5.66e-12 65.9
MS.gene86518.t1 AT4G03115 25.877 228 150 6 16 239 37 249 2.57e-11 63.5
MS.gene86518.t1 AT5G58970 26.054 261 154 9 32 265 27 275 2.81e-11 63.5
MS.gene86518.t1 AT3G21390 25.359 209 126 5 19 198 128 335 4.13e-11 63.2
MS.gene86518.t1 AT3G21390 25.481 208 125 5 19 197 150 356 4.15e-11 63.2
MS.gene86518.t1 AT4G03115 25.877 228 150 6 16 239 69 281 4.17e-11 63.2
MS.gene86518.t1 AT5G48970 25.243 206 119 5 19 193 62 263 6.02e-11 62.0
MS.gene86518.t1 AT5G48970 25.743 202 123 5 19 193 133 334 6.63e-11 62.4
MS.gene86518.t1 AT2G47490 28.652 178 112 5 33 197 129 304 7.40e-11 62.4

Find 71 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAATACTGTAATACTTAAT+AGG 0.188446 5.1:-15307566 None:intergenic
CCGTGGACTTGTTCCACTTT+TGG 0.215295 5.1:+15308016 MS.gene86518:CDS
AAGACTCCTGGTAAATAAAT+TGG 0.271424 5.1:-15309148 None:intergenic
AAATGGACATAGAGCTAAAT+TGG 0.273532 5.1:-15307792 None:intergenic
GGATGGACAGGCAAGTTCTT+TGG 0.324400 5.1:+15307641 MS.gene86518:CDS
TCTTCCTATTAGAATGTTGC+TGG 0.355082 5.1:+15309167 MS.gene86518:CDS
AACCATTGCAAGGTTATAGA+AGG 0.364536 5.1:-15309195 None:intergenic
CCAACCAGCAACATTCTAAT+AGG 0.366589 5.1:-15309171 None:intergenic
CCTTCTGCTGCATATACCTT+TGG 0.377619 5.1:-15307878 None:intergenic
TATTATGCCCTTTGCACCAT+TGG 0.395910 5.1:+15306570 MS.gene86518:CDS
AAATACTGTAATACTTAATA+GGG 0.401083 5.1:-15307565 None:intergenic
GCTCAAGGAGGATGTAGATT+TGG 0.412818 5.1:+15307671 MS.gene86518:CDS
CATTTGAAGCTGTTAAAGTC+AGG 0.432003 5.1:+15307810 MS.gene86518:CDS
AAAAGCCGAGAGTCTTGTTC+TGG 0.432484 5.1:+15309020 MS.gene86518:CDS
CATGCTTTACTACGTTATTG+AGG 0.443788 5.1:+15307591 MS.gene86518:CDS
TATGCTAAGGGCATGTTTGA+CGG 0.461515 5.1:+15307851 MS.gene86518:CDS
CTGACTTTAACAGCTTCAAA+TGG 0.463411 5.1:-15307809 None:intergenic
GGGAGTTTACTCCAATGTAT+TGG 0.465784 5.1:+15307712 MS.gene86518:CDS
GGCTAGCCAATTTATTTACC+AGG 0.471960 5.1:+15309142 MS.gene86518:CDS
CATTCCTCCAATGGTGCAAA+GGG 0.480811 5.1:-15306577 None:intergenic
CTGTGAGATTCCTCCTTCCA+TGG 0.485797 5.1:-15306532 None:intergenic
CCTATTAGAATGTTGCTGGT+TGG 0.486509 5.1:+15309171 MS.gene86518:CDS
TTCTTTGGCTATGGTGCTCA+AGG 0.488078 5.1:+15307656 MS.gene86518:CDS
ATGCTTTACTACGTTATTGA+GGG 0.494702 5.1:+15307592 MS.gene86518:CDS
TGTTTAGCTGGTTATACCGC+TGG 0.496234 5.1:+15308937 MS.gene86518:CDS
GAAAGAGATCATGGCGGCCA+TGG 0.501490 5.1:+15306515 None:intergenic
GCCCTTCTATAACCTTGCAA+TGG 0.509416 5.1:+15309193 MS.gene86518:CDS
TATGCCCTTTGCACCATTGG+AGG 0.515475 5.1:+15306573 MS.gene86518:CDS
ACAGGCAAGTTCTTTGGCTA+TGG 0.516450 5.1:+15307647 MS.gene86518:CDS
AGCACAACCTAGTTATGCTA+AGG 0.519278 5.1:+15307838 MS.gene86518:CDS
CTAGGTGTGACATGTTTAGC+TGG 0.525462 5.1:+15308925 MS.gene86518:CDS
GTCCTGTGGAAAGGATGGAC+AGG 0.530212 5.1:+15307629 MS.gene86518:CDS
TTAACTTTCAAAACATCAAG+AGG 0.535490 5.1:-15306633 None:intergenic
GGAATGTTTCGACCCAAAAG+TGG 0.540620 5.1:-15308029 None:intergenic
TGCCTGTCCATCCTTTCCAC+AGG 0.541611 5.1:-15307631 None:intergenic
ACTACGTTATTGAGGGAACA+AGG 0.543366 5.1:+15307599 MS.gene86518:CDS
GGGCCTTCTGTCCTGTGGAA+AGG 0.544497 5.1:+15307620 MS.gene86518:CDS
CTTCTGTCCTGTGGAAAGGA+TGG 0.546940 5.1:+15307624 MS.gene86518:CDS
AATATACAAGACTTCTGTGC+TGG 0.548042 5.1:-15307739 None:intergenic
GAAGCTACTATATTGTCAGC+AGG 0.549701 5.1:-15308985 None:intergenic
GAGATCATGGCGGCCATGGA+AGG 0.551462 5.1:+15306519 None:intergenic
GCATTCCTCCAATGGTGCAA+AGG 0.561781 5.1:-15306578 None:intergenic
GGTTATACCGCTGGATCCGT+TGG 0.563265 5.1:+15308946 MS.gene86518:CDS
ATTTGAAGCTGTTAAAGTCA+GGG 0.563948 5.1:+15307811 MS.gene86518:CDS
CATCCTTTCCACAGGACAGA+AGG 0.566116 5.1:-15307623 None:intergenic
AGCACTGAGCATTCCTCCAA+TGG 0.567164 5.1:-15306586 None:intergenic
CATGTTTGACGGCTTTCCAA+AGG 0.568484 5.1:+15307862 MS.gene86518:CDS
ATTGGAGGAATGCTCAGTGC+TGG 0.571365 5.1:+15306588 MS.gene86518:CDS
TGTTCAAAAGCTCAACAGCT+AGG 0.578381 5.1:+15308907 MS.gene86518:CDS
AACAAGGGCCTTCTGTCCTG+TGG 0.579264 5.1:+15307615 MS.gene86518:CDS
CATTCTAATAGGAAGACTCC+TGG 0.594584 5.1:-15309160 None:intergenic
ATCATGGCGGCCATGGAAGG+AGG 0.596330 5.1:+15306522 None:intergenic
GTGCAAAGGGCATAATACCT+TGG 0.599144 5.1:-15306564 None:intergenic
GTGCTGGTCTACCAATACAT+TGG 0.601303 5.1:-15307723 None:intergenic
TTTGGCTATGGTGCTCAAGG+AGG 0.604197 5.1:+15307659 MS.gene86518:CDS
ACCATTGCAAGGTTATAGAA+GGG 0.611334 5.1:-15309194 None:intergenic
CCAAAGGTATATGCAGCAGA+AGG 0.616204 5.1:+15307878 MS.gene86518:CDS
AAATACCAGAACAAGACTCT+CGG 0.618357 5.1:-15309025 None:intergenic
CTACGTTATTGAGGGAACAA+GGG 0.623719 5.1:+15307600 MS.gene86518:CDS
GCACAACCTAGTTATGCTAA+GGG 0.624854 5.1:+15307839 MS.gene86518:CDS
CATGGAAGGAGGAATCTCAC+AGG 0.638936 5.1:+15306533 MS.gene86518:CDS
AGGAGTTGTAGCAAGATGAG+TGG 0.639871 5.1:-15306613 None:intergenic
GAATGTTGAGAACATAACCA+TGG 0.644534 5.1:-15308830 None:intergenic
AACATGCCCTTAGCATAACT+AGG 0.649459 5.1:-15307845 None:intergenic
ATTAGAAACAAAGCTACCAA+CGG 0.659190 5.1:-15308962 None:intergenic
AAAGCTACCAACGGATCCAG+CGG 0.665155 5.1:-15308953 None:intergenic
TATGCAGCAGAAGGCGCACG+AGG 0.673682 5.1:+15307887 MS.gene86518:CDS
CCAAAAGTGGAACAAGTCCA+CGG 0.677014 5.1:-15308016 None:intergenic
TCTCACAGGAATTAACGCCA+AGG 0.701621 5.1:+15306547 MS.gene86518:CDS
ATGCAGCAGAAGGCGCACGA+GGG 0.753181 5.1:+15307888 MS.gene86518:CDS
ACTGCTTGCAGATTCTACCG+TGG 0.755591 5.1:+15307999 MS.gene86518:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAAAGATTAATTTTTTT+GGG + chr5.1:15307227-15307246 MS.gene86518:intron 10.0%
!!! GTTTTATCATATTTAATTAA+TGG + chr5.1:15307513-15307532 MS.gene86518:intron 10.0%
!!! TTTTTAAATATAAAGTTGTA+TGG - chr5.1:15308106-15308125 None:intergenic 10.0%
!! AAATACTGTAATACTTAATA+GGG - chr5.1:15307568-15307587 None:intergenic 15.0%
!! ATAAAAAATGTGGAAAAAAT+TGG + chr5.1:15307288-15307307 MS.gene86518:intron 15.0%
!! ATATATTGTTACTAAACATT+AGG - chr5.1:15306820-15306839 None:intergenic 15.0%
!! ATGTTTAGTAACAATATATT+TGG + chr5.1:15307127-15307146 MS.gene86518:intron 15.0%
!! TAAAAAATGTGGAAAAAATT+GGG + chr5.1:15307289-15307308 MS.gene86518:intron 15.0%
!! TATATTGTTACTAAACATTA+GGG - chr5.1:15306819-15306838 None:intergenic 15.0%
!! TTATCATATTTAATTAATGG+AGG + chr5.1:15307516-15307535 MS.gene86518:intron 15.0%
!!! AGAAAAGATTAATTTTTTTG+GGG + chr5.1:15307228-15307247 MS.gene86518:intron 15.0%
!!! GAAAAACATTAGTTTTTTTT+TGG + chr5.1:15306997-15307016 MS.gene86518:intron 15.0%
!!! GAAGAAAAGATTAATTTTTT+TGG + chr5.1:15307226-15307245 MS.gene86518:intron 15.0%
!! AAAAATCACTCAAACATAAA+GGG - chr5.1:15307257-15307276 None:intergenic 20.0%
!! AACAATATATGTGGAAAAAT+AGG + chr5.1:15306830-15306849 MS.gene86518:intron 20.0%
!! AATCAAATGAAGAAAATTTC+CGG - chr5.1:15308342-15308361 None:intergenic 20.0%
!! ATAAATTGCTACTAAACAAT+AGG - chr5.1:15306969-15306988 None:intergenic 20.0%
!! ATACTAATGCATAAAAAATG+TGG + chr5.1:15307278-15307297 MS.gene86518:intron 20.0%
!! ATGTTTAGTAACAATATATG+TGG + chr5.1:15306821-15306840 MS.gene86518:intron 20.0%
!! GAAATACTGTAATACTTAAT+AGG - chr5.1:15307569-15307588 None:intergenic 20.0%
!! TAAATTGCTACTAAACAATA+GGG - chr5.1:15306968-15306987 None:intergenic 20.0%
!! TTTGGTATCTTTATCATATT+CGG + chr5.1:15308304-15308323 MS.gene86518:intron 20.0%
!!! ATGAAAAATCATTTTCACAA+AGG - chr5.1:15307464-15307483 None:intergenic 20.0%
!!! CTTTTTTAGTTTGTTTGATT+AGG + chr5.1:15306724-15306743 MS.gene86518:intron 20.0%
!!! GTATTTTCTTATGAACATTA+GGG - chr5.1:15307203-15307222 None:intergenic 20.0%
!!! TGAAAAATCATTTTCACAAA+GGG - chr5.1:15307463-15307482 None:intergenic 20.0%
!!! TTGGATAAACAGTTTTTTTT+GGG + chr5.1:15307146-15307165 MS.gene86518:intron 20.0%
!!! TTTGGATAAACAGTTTTTTT+TGG + chr5.1:15307145-15307164 MS.gene86518:intron 20.0%
! AAAAGAATAAGCTGAATACT+TGG - chr5.1:15308513-15308532 None:intergenic 25.0%
! AAAATCACTCTCAAACATAA+AGG - chr5.1:15306871-15306890 None:intergenic 25.0%
! AAATCACTCTCAAACATAAA+GGG - chr5.1:15306870-15306889 None:intergenic 25.0%
! AAATCATACTCAAACACAAA+AGG - chr5.1:15306792-15306811 None:intergenic 25.0%
! AATCATACTCAAACACAAAA+GGG - chr5.1:15306791-15306810 None:intergenic 25.0%
! AATGTTCATAAGAAAATACG+TGG + chr5.1:15307204-15307223 MS.gene86518:intron 25.0%
! AATTCATTCTCATCCATAAA+AGG - chr5.1:15307098-15307117 None:intergenic 25.0%
! ATTCATTCTCATCCATAAAA+GGG - chr5.1:15307097-15307116 None:intergenic 25.0%
! CAAGAGATAATGAAATTACA+TGG - chr5.1:15308053-15308072 None:intergenic 25.0%
! CAAGATCAATTCTAAACATT+AGG - chr5.1:15307487-15307506 None:intergenic 25.0%
! CAATGTTGTCAAAAGAAAAA+AGG + chr5.1:15308879-15308898 MS.gene86518:CDS 25.0%
! CATACAGTTATATTATATGC+TGG - chr5.1:15308186-15308205 None:intergenic 25.0%
! GAAAAATCACTCAAACATAA+AGG - chr5.1:15307258-15307277 None:intergenic 25.0%
! GGTAAAGAAAGATTTCAATA+CGG + chr5.1:15307909-15307928 MS.gene86518:intron 25.0%
! GTGGGAAAATTGAATATTTA+TGG + chr5.1:15307068-15307087 MS.gene86518:intron 25.0%
! TATGCTTAAAGATGTTTAGT+GGG + chr5.1:15308202-15308221 MS.gene86518:intron 25.0%
! TATTTAATCTTGCACTAGTT+TGG + chr5.1:15308079-15308098 MS.gene86518:intron 25.0%
! TGTTTAGTAGCAATTTATGT+GGG + chr5.1:15306971-15306990 MS.gene86518:intron 25.0%
! TTAACTTTCAAAACATCAAG+AGG - chr5.1:15306636-15306655 None:intergenic 25.0%
! TTGTTTAGTAGCAATTTATG+TGG + chr5.1:15306970-15306989 MS.gene86518:intron 25.0%
!! AAGTATTCAGCTTATTCTTT+TGG + chr5.1:15308512-15308531 MS.gene86518:intron 25.0%
!! ATTTAATCTTGCACTAGTTT+GGG + chr5.1:15308080-15308099 MS.gene86518:intron 25.0%
!! CGTATTTTCTTATGAACATT+AGG - chr5.1:15307204-15307223 None:intergenic 25.0%
!! TATTTATGGTTACCCTTTTA+TGG + chr5.1:15307082-15307101 MS.gene86518:intron 25.0%
!! TGGTCTGTATGAATATTTTA+AGG + chr5.1:15307691-15307710 MS.gene86518:CDS 25.0%
!! TTTCTCTTTGGTATATGTTT+TGG + chr5.1:15308286-15308305 MS.gene86518:intron 25.0%
!! TTTGATTAGGTTGTAGAAAT+GGG + chr5.1:15306737-15306756 MS.gene86518:intron 25.0%
!! TTTTCAGCTAAAACATCTTT+AGG - chr5.1:15308239-15308258 None:intergenic 25.0%
!!! AACTTCTTTAAAACTAAGCA+TGG + chr5.1:15308619-15308638 MS.gene86518:intron 25.0%
!!! GGTCTGTATGAATATTTTAA+GGG + chr5.1:15307692-15307711 MS.gene86518:CDS 25.0%
!!! GTGGAAAAGTTGAAATTTTT+TGG + chr5.1:15306911-15306930 MS.gene86518:intron 25.0%
AAAATTTCCGGACATTAAGT+AGG - chr5.1:15308330-15308349 None:intergenic 30.0%
AAAGATGTTTAGTGGGAAAT+TGG + chr5.1:15308209-15308228 MS.gene86518:intron 30.0%
AAATCATTCTCATCCATGAA+AGG - chr5.1:15306941-15306960 None:intergenic 30.0%
AAATGGACATAGAGCTAAAT+TGG - chr5.1:15307795-15307814 None:intergenic 30.0%
AACATAACTCTCAAGCATAA+AGG - chr5.1:15307027-15307046 None:intergenic 30.0%
AACTGTCCAACAAAAAAAAC+AGG - chr5.1:15308809-15308828 None:intergenic 30.0%
AAGACTCCTGGTAAATAAAT+TGG - chr5.1:15309151-15309170 None:intergenic 30.0%
ACATAACTCTCAAGCATAAA+GGG - chr5.1:15307026-15307045 None:intergenic 30.0%
ACTTGATTGATCAGGTTATA+GGG + chr5.1:15308408-15308427 MS.gene86518:intron 30.0%
AGAGTTATGTTTCACACTAA+TGG + chr5.1:15307036-15307055 MS.gene86518:intron 30.0%
AGCTATAAGTCTATAACTCA+TGG + chr5.1:15308752-15308771 MS.gene86518:intron 30.0%
ATATACCAAAGAGAAAAGCA+AGG - chr5.1:15308282-15308301 None:intergenic 30.0%
ATGCTTTACTACGTTATTGA+GGG + chr5.1:15307592-15307611 MS.gene86518:CDS 30.0%
ATTAGAAACAAAGCTACCAA+CGG - chr5.1:15308965-15308984 None:intergenic 30.0%
ATTGCGTTACACTTATTCTA+TGG + chr5.1:15309100-15309119 MS.gene86518:intron 30.0%
CATGAAAACTATCTTTATGC+TGG + chr5.1:15308135-15308154 MS.gene86518:intron 30.0%
GGTTAATACAGAACAAAATG+TGG + chr5.1:15307415-15307434 MS.gene86518:intron 30.0%
GTATGCTTAAAGATGTTTAG+TGG + chr5.1:15308201-15308220 MS.gene86518:intron 30.0%
TACTTGATTGATCAGGTTAT+AGG + chr5.1:15308407-15308426 MS.gene86518:intron 30.0%
TGTTGTCAAAAGAAAAAAGG+AGG + chr5.1:15308882-15308901 MS.gene86518:CDS 30.0%
! ACACTAATGGACAAAAAATG+TGG + chr5.1:15307049-15307068 MS.gene86518:intron 30.0%
! ACACTAATGGACAAAATATG+TGG + chr5.1:15306892-15306911 MS.gene86518:intron 30.0%
! ATTTGAAGCTGTTAAAGTCA+GGG + chr5.1:15307811-15307830 MS.gene86518:CDS 30.0%
! CACTAATGGACAAAAAATGT+GGG + chr5.1:15307050-15307069 MS.gene86518:intron 30.0%
! GTTTGATTAGGTTGTAGAAA+TGG + chr5.1:15306736-15306755 MS.gene86518:intron 30.0%
! TACGACACTATCAAAGTTTT+AGG + chr5.1:15309222-15309241 MS.gene86518:CDS 30.0%
! TTCATGGATGAGAATGATTT+TGG + chr5.1:15306941-15306960 MS.gene86518:intron 30.0%
! TTGATTAGGTTGTAGAAATG+GGG + chr5.1:15306738-15306757 MS.gene86518:intron 30.0%
! TTGTTAGTTTATCAACCAAC+AGG - chr5.1:15308443-15308462 None:intergenic 30.0%
!! TTAGCTTTTATAAGCTAAGC+AGG + chr5.1:15308487-15308506 MS.gene86518:intron 30.0%
!!! ATTTTTTGGCTAACCTTTCA+TGG + chr5.1:15306925-15306944 MS.gene86518:intron 30.0%
!!! GAGTATCCTGTTTTTTTTGT+TGG + chr5.1:15308800-15308819 MS.gene86518:intron 30.0%
!!! TGTTTTGAAAGTTAACATGC+AGG + chr5.1:15306641-15306660 MS.gene86518:CDS 30.0%
AAATACCAGAACAAGACTCT+CGG - chr5.1:15309028-15309047 None:intergenic 35.0%
AACCATTGCAAGGTTATAGA+AGG - chr5.1:15309198-15309217 None:intergenic 35.0%
AATATACAAGACTTCTGTGC+TGG - chr5.1:15307742-15307761 None:intergenic 35.0%
ACAAATTTCATCACCATCAC+AGG - chr5.1:15308716-15308735 None:intergenic 35.0%
ACCAATGATTGTTCCAGTTA+GGG - chr5.1:15307331-15307350 None:intergenic 35.0%
ACCATTGCAAGGTTATAGAA+GGG - chr5.1:15309197-15309216 None:intergenic 35.0%
AGCTGAACTCTTAGATTATC+AGG + chr5.1:15307370-15307389 MS.gene86518:intron 35.0%
CACTATTACAACATAGTCAC+AGG - chr5.1:15308562-15308581 None:intergenic 35.0%
CATGCTTTACTACGTTATTG+AGG + chr5.1:15307591-15307610 MS.gene86518:CDS 35.0%
CTGACTTTAACAGCTTCAAA+TGG - chr5.1:15307812-15307831 None:intergenic 35.0%
GAAGATTTCACAGGATAGAA+TGG - chr5.1:15308164-15308183 None:intergenic 35.0%
GAATGTTGAGAACATAACCA+TGG - chr5.1:15308833-15308852 None:intergenic 35.0%
GAGAAACTACTTGATTGATC+AGG + chr5.1:15308400-15308419 MS.gene86518:intron 35.0%
GAGTGTTCAGTATATTCTTC+TGG + chr5.1:15308643-15308662 MS.gene86518:intron 35.0%
GCTGAACTCTTAGATTATCA+GGG + chr5.1:15307371-15307390 MS.gene86518:intron 35.0%
GTGGAAAACTTGACTATCTT+TGG + chr5.1:15307434-15307453 MS.gene86518:intron 35.0%
TAGTAGCAATTTATGTGGGA+TGG + chr5.1:15306975-15306994 MS.gene86518:intron 35.0%
TATATGCTGGAAGATTTCAC+AGG - chr5.1:15308173-15308192 None:intergenic 35.0%
TCTTCCTATTAGAATGTTGC+TGG + chr5.1:15309167-15309186 MS.gene86518:CDS 35.0%
TTATTGTTAGTCACATGCTG+AGG + chr5.1:15308374-15308393 MS.gene86518:intron 35.0%
! CATTTGAAGCTGTTAAAGTC+AGG + chr5.1:15307810-15307829 MS.gene86518:CDS 35.0%
! GAGAGTGATTTTCACACTAA+TGG + chr5.1:15306879-15306898 MS.gene86518:intron 35.0%
! TGATTAGGTTGTAGAAATGG+GGG + chr5.1:15306739-15306758 MS.gene86518:intron 35.0%
! TTTTTGTTGGACAGTTTCCA+TGG + chr5.1:15308813-15308832 MS.gene86518:intron 35.0%
!!! GACACTATCAAAGTTTTAGG+TGG + chr5.1:15309225-15309244 MS.gene86518:CDS 35.0%
!!! TTTTTTTGGGCTACCCTTTT+AGG + chr5.1:15307159-15307178 MS.gene86518:intron 35.0%
AAATCACTCCCAGACCTAAA+AGG - chr5.1:15307176-15307195 None:intergenic 40.0%
AACATGCCCTTAGCATAACT+AGG - chr5.1:15307848-15307867 None:intergenic 40.0%
AATCACTCCCAGACCTAAAA+GGG - chr5.1:15307175-15307194 None:intergenic 40.0%
AATCTAAGAGTTCAGCTCAG+AGG - chr5.1:15307367-15307386 None:intergenic 40.0%
ACCCTAACTGGAACAATCAT+TGG + chr5.1:15307327-15307346 MS.gene86518:intron 40.0%
ACTACGTTATTGAGGGAACA+AGG + chr5.1:15307599-15307618 MS.gene86518:CDS 40.0%
AGCACAACCTAGTTATGCTA+AGG + chr5.1:15307838-15307857 MS.gene86518:CDS 40.0%
CATTCTAATAGGAAGACTCC+TGG - chr5.1:15309163-15309182 None:intergenic 40.0%
CCAACCAGCAACATTCTAAT+AGG - chr5.1:15309174-15309193 None:intergenic 40.0%
CCTATTAGAATGTTGCTGGT+TGG + chr5.1:15309171-15309190 MS.gene86518:CDS 40.0%
CGTTACACTTATTCTATGGC+AGG + chr5.1:15309104-15309123 MS.gene86518:intron 40.0%
CTACGTTATTGAGGGAACAA+GGG + chr5.1:15307600-15307619 MS.gene86518:CDS 40.0%
CTTGATGTGCATCTGTCTTT+AGG + chr5.1:15307942-15307961 MS.gene86518:intron 40.0%
GAAGCTACTATATTGTCAGC+AGG - chr5.1:15308988-15309007 None:intergenic 40.0%
GACCAATGATTGTTCCAGTT+AGG - chr5.1:15307332-15307351 None:intergenic 40.0%
GCACAACCTAGTTATGCTAA+GGG + chr5.1:15307839-15307858 MS.gene86518:CDS 40.0%
GGCAGGCTATCAGAAAAATT+GGG + chr5.1:15309121-15309140 MS.gene86518:intron 40.0%
GGGAGTTTACTCCAATGTAT+TGG + chr5.1:15307712-15307731 MS.gene86518:CDS 40.0%
GTCGTAGAAAAACCATTGCA+AGG - chr5.1:15309208-15309227 None:intergenic 40.0%
TATTATGCCCTTTGCACCAT+TGG + chr5.1:15306570-15306589 MS.gene86518:CDS 40.0%
TATTCGGCCTACTTAATGTC+CGG + chr5.1:15308320-15308339 MS.gene86518:intron 40.0%
TGCTTCTTTGCAACTGCATT+TGG + chr5.1:15309047-15309066 MS.gene86518:intron 40.0%
TGGCAGGCTATCAGAAAAAT+TGG + chr5.1:15309120-15309139 MS.gene86518:intron 40.0%
TGTTCAAAAGCTCAACAGCT+AGG + chr5.1:15308907-15308926 MS.gene86518:CDS 40.0%
TTCTGAGTTTGAACCCTAAC+TGG + chr5.1:15307315-15307334 MS.gene86518:intron 40.0%
TTGTGACTAAGTTCCTGTGA+TGG + chr5.1:15308700-15308719 MS.gene86518:intron 40.0%
! GGCTAGCCAATTTATTTACC+AGG + chr5.1:15309142-15309161 MS.gene86518:CDS 40.0%
! TATGCTAAGGGCATGTTTGA+CGG + chr5.1:15307851-15307870 MS.gene86518:CDS 40.0%
!! TTACGCCTTGCTTTTCTCTT+TGG + chr5.1:15308274-15308293 MS.gene86518:intron 40.0%
ACAGGCAAGTTCTTTGGCTA+TGG + chr5.1:15307647-15307666 MS.gene86518:CDS 45.0%
AGGAGTTGTAGCAAGATGAG+TGG - chr5.1:15306616-15306635 None:intergenic 45.0%
ATAGGGCAGTAGTTACCTGT+TGG + chr5.1:15308425-15308444 MS.gene86518:intron 45.0%
ATTATCAGGGCCGTTTCTCT+AGG + chr5.1:15307384-15307403 MS.gene86518:intron 45.0%
CATGTTTGACGGCTTTCCAA+AGG + chr5.1:15307862-15307881 MS.gene86518:CDS 45.0%
CATTCCTCCAATGGTGCAAA+GGG - chr5.1:15306580-15306599 None:intergenic 45.0%
CCAAAAGTGGAACAAGTCCA+CGG - chr5.1:15308019-15308038 None:intergenic 45.0%
CCTTCTGCTGCATATACCTT+TGG - chr5.1:15307881-15307900 None:intergenic 45.0%
CTAGGTGTGACATGTTTAGC+TGG + chr5.1:15308925-15308944 MS.gene86518:CDS 45.0%
GAAGTGATGCTGTCACATGT+AGG + chr5.1:15307538-15307557 MS.gene86518:intron 45.0%
GCCCTTCTATAACCTTGCAA+TGG + chr5.1:15309193-15309212 MS.gene86518:CDS 45.0%
GCTCAAGGAGGATGTAGATT+TGG + chr5.1:15307671-15307690 MS.gene86518:CDS 45.0%
GGAATGTTTCGACCCAAAAG+TGG - chr5.1:15308032-15308051 None:intergenic 45.0%
TCTCACAGGAATTAACGCCA+AGG + chr5.1:15306547-15306566 MS.gene86518:CDS 45.0%
TGTTTAGCTGGTTATACCGC+TGG + chr5.1:15308937-15308956 MS.gene86518:CDS 45.0%
TTCTTTGGCTATGGTGCTCA+AGG + chr5.1:15307656-15307675 MS.gene86518:CDS 45.0%
! CCAAAGGTATATGCAGCAGA+AGG + chr5.1:15307878-15307897 MS.gene86518:CDS 45.0%
! GTGCAAAGGGCATAATACCT+TGG - chr5.1:15306567-15306586 None:intergenic 45.0%
! GTGCTGGTCTACCAATACAT+TGG - chr5.1:15307726-15307745 None:intergenic 45.0%
!! AAAAGCCGAGAGTCTTGTTC+TGG + chr5.1:15309020-15309039 MS.gene86518:CDS 45.0%
!! CGTGGACTTGTTCCACTTTT+GGG + chr5.1:15308017-15308036 MS.gene86518:CDS 45.0%
!! AAGAAATTAAATAAAAAAAA+TGG - chr5.1:15306685-15306704 None:intergenic 5.0%
AAAGCTACCAACGGATCCAG+CGG - chr5.1:15308956-15308975 None:intergenic 50.0%
ACTGCTTGCAGATTCTACCG+TGG + chr5.1:15307999-15308018 MS.gene86518:intron 50.0%
AGGTTGTAGAAATGGGGGAG+TGG + chr5.1:15306744-15306763 MS.gene86518:intron 50.0%
ATTGGAGGAATGCTCAGTGC+TGG + chr5.1:15306588-15306607 MS.gene86518:CDS 50.0%
CATCCTTTCCACAGGACAGA+AGG - chr5.1:15307626-15307645 None:intergenic 50.0%
CATGGAAGGAGGAATCTCAC+AGG + chr5.1:15306533-15306552 MS.gene86518:CDS 50.0%
CCCTCCAGTTCCTAGAGAAA+CGG - chr5.1:15307397-15307416 None:intergenic 50.0%
CTGTGAGATTCCTCCTTCCA+TGG - chr5.1:15306535-15306554 None:intergenic 50.0%
CTTCTGTCCTGTGGAAAGGA+TGG + chr5.1:15307624-15307643 MS.gene86518:CDS 50.0%
GCATTCCTCCAATGGTGCAA+AGG - chr5.1:15306581-15306600 None:intergenic 50.0%
GGATGGACAGGCAAGTTCTT+TGG + chr5.1:15307641-15307660 MS.gene86518:CDS 50.0%
TATGCCCTTTGCACCATTGG+AGG + chr5.1:15306573-15306592 MS.gene86518:CDS 50.0%
TTTGGCTATGGTGCTCAAGG+AGG + chr5.1:15307659-15307678 MS.gene86518:CDS 50.0%
! AGCACTGAGCATTCCTCCAA+TGG - chr5.1:15306589-15306608 None:intergenic 50.0%
! CCGTTTCTCTAGGAACTGGA+GGG + chr5.1:15307394-15307413 MS.gene86518:intron 50.0%
!! CCGTGGACTTGTTCCACTTT+TGG + chr5.1:15308016-15308035 MS.gene86518:CDS 50.0%
!! TGGGCTACCCTTTTAGGTCT+GGG + chr5.1:15307165-15307184 MS.gene86518:intron 50.0%
!! TTGGGCTACCCTTTTAGGTC+TGG + chr5.1:15307164-15307183 MS.gene86518:intron 50.0%
AACAAGGGCCTTCTGTCCTG+TGG + chr5.1:15307615-15307634 MS.gene86518:CDS 55.0%
GGTTATACCGCTGGATCCGT+TGG + chr5.1:15308946-15308965 MS.gene86518:CDS 55.0%
GTCCTGTGGAAAGGATGGAC+AGG + chr5.1:15307629-15307648 MS.gene86518:CDS 55.0%
TGCCTGTCCATCCTTTCCAC+AGG - chr5.1:15307634-15307653 None:intergenic 55.0%
! AGGGCCGTTTCTCTAGGAAC+TGG + chr5.1:15307390-15307409 MS.gene86518:intron 55.0%
! GCCGTTTCTCTAGGAACTGG+AGG + chr5.1:15307393-15307412 MS.gene86518:intron 55.0%
GGGCCTTCTGTCCTGTGGAA+AGG + chr5.1:15307620-15307639 MS.gene86518:CDS 60.0%
! ATGCAGCAGAAGGCGCACGA+GGG + chr5.1:15307888-15307907 MS.gene86518:CDS 60.0%
! TATGCAGCAGAAGGCGCACG+AGG + chr5.1:15307887-15307906 MS.gene86518:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 15306525 15309254 15306525 ID=MS.gene86518
chr5.1 mRNA 15306525 15309254 15306525 ID=MS.gene86518.t1;Parent=MS.gene86518
chr5.1 exon 15306525 15306662 15306525 ID=MS.gene86518.t1.exon1;Parent=MS.gene86518.t1
chr5.1 CDS 15306525 15306662 15306525 ID=cds.MS.gene86518.t1;Parent=MS.gene86518.t1
chr5.1 exon 15307560 15307909 15307560 ID=MS.gene86518.t1.exon2;Parent=MS.gene86518.t1
chr5.1 CDS 15307560 15307909 15307560 ID=cds.MS.gene86518.t1;Parent=MS.gene86518.t1
chr5.1 exon 15308010 15308053 15308010 ID=MS.gene86518.t1.exon3;Parent=MS.gene86518.t1
chr5.1 CDS 15308010 15308053 15308010 ID=cds.MS.gene86518.t1;Parent=MS.gene86518.t1
chr5.1 exon 15308827 15309041 15308827 ID=MS.gene86518.t1.exon4;Parent=MS.gene86518.t1
chr5.1 CDS 15308827 15309041 15308827 ID=cds.MS.gene86518.t1;Parent=MS.gene86518.t1
chr5.1 exon 15309126 15309254 15309126 ID=MS.gene86518.t1.exon5;Parent=MS.gene86518.t1
chr5.1 CDS 15309126 15309254 15309126 ID=cds.MS.gene86518.t1;Parent=MS.gene86518.t1
Gene Sequence

>MS.gene86518

ATGGCGGCCATGGAAGGAGGAATCTCACAGGAATTAACGCCAAGGTATTATGCCCTTTGCACCATTGGAGGAATGCTCAGTGCTGGTACCACTCATCTTGCTACAACTCCTCTTGATGTTTTGAAAGTTAACATGCAGGTTAGTTGCATTTTAATTTCCATTTTTTTTATTTAATTTCTTTGTTTCATGATAATGAAGTCTTTTTTAGTTTGTTTGATTAGGTTGTAGAAATGGGGGAGTGGAAAAATTTGATTTTTTAGATACCCTTTTGTGTTTGAGTATGATTTTGTACCCTAATGTTTAGTAACAATATATGTGGAAAAATAGGTTTTGTTTAGAATGCCCTTTATGTTTGAGAGTGATTTTCACACTAATGGACAAAATATGTGGAAAAGTTGAAATTTTTTGGCTAACCTTTCATGGATGAGAATGATTTTGGACCCTATTGTTTAGTAGCAATTTATGTGGGATGGAAAAACATTAGTTTTTTTTTGGATACCCTTTATGCTTGAGAGTTATGTTTCACACTAATGGACAAAAAATGTGGGAAAATTGAATATTTATGGTTACCCTTTTATGGATGAGAATGAATTTGCAACCTAATGTTTAGTAACAATATATTTGGATAAACAGTTTTTTTTGGGCTACCCTTTTAGGTCTGGGAGTGATTTTGCACCCTAATGTTCATAAGAAAATACGTGGAAGAAAAGATTAATTTTTTTGGGGCTACCCTTTATGTTTGAGTGATTTTTCATACTAATGCATAAAAAATGTGGAAAAAATTGGGAGTTTCTGAGTTTGAACCCTAACTGGAACAATCATTGGTCAGACTTTACTTACCTCTGAGCTGAACTCTTAGATTATCAGGGCCGTTTCTCTAGGAACTGGAGGGTTAATACAGAACAAAATGTGGAAAACTTGACTATCTTTGGCTACCCTTTGTGAAAATGATTTTTCATCCTAATGTTTAGAATTGATCTTGTTGTTCGTTTTATCATATTTAATTAATGGAGGAAGTGATGCTGTCACATGTAGGTGCACCCTATTAAGTATTACAGTATTTCGTCATGCTTTACTACGTTATTGAGGGAACAAGGGCCTTCTGTCCTGTGGAAAGGATGGACAGGCAAGTTCTTTGGCTATGGTGCTCAAGGAGGATGTAGATTTGGTCTGTATGAATATTTTAAGGGAGTTTACTCCAATGTATTGGTAGACCAGCACAGAAGTCTTGTATATTTTCTTAGTAGTGCATCTGCTGAAGTATTTGCCAATTTAGCTCTATGTCCATTTGAAGCTGTTAAAGTCAGGGTTCAAGCACAACCTAGTTATGCTAAGGGCATGTTTGACGGCTTTCCAAAGGTATATGCAGCAGAAGGCGCACGAGGGTAAAGAAAGATTTCAATACGGTCGTTTACTACTTGATGTGCATCTGTCTTTAGGAGATGATTTTGATTATTTATCTTCTATTTTATGTACTGCTTGCAGATTCTACCGTGGACTTGTTCCACTTTTGGGTCGAAACATTCCATGTAATTTCATTATCTCTTGAAACTTTATTTAATCTTGCACTAGTTTGGGCCATACAACTTTATATTTAAAAATTAACGAAACATGAAAACTATCTTTATGCTGGCTGCCATTCTATCCTGTGAAATCTTCCAGCATATAATATAACTGTATGCTTAAAGATGTTTAGTGGGAAATTGGTTGACCTAAAGATGTTTTAGCTGAAAAAAATCTATTAAATTTTTACGCCTTGCTTTTCTCTTTGGTATATGTTTTGGTATCTTTATCATATTCGGCCTACTTAATGTCCGGAAATTTTCTTCATTTGATTTTGCTGAATCGTTTATTGTTAGTCACATGCTGAGGTATGAGAAACTACTTGATTGATCAGGTTATAGGGCAGTAGTTACCTGTTGGTTGATAAACTAACAAAAGATTTTTATTGCTAAAGTAACATTAGCTTTTATAAGCTAAGCAGGCCAAGTATTCAGCTTATTCTTTTGGATTATGTTGTAAATTATTATGTTTCCTGTGACTATGTTGTAATAGTGAAATAGATGTTGAATTATAAATTATAAAATAACAATAAACTTCTTTAAAACTAAGCATGGTGAGTGTTCAGTATATTCTTCTGGATTATGTTGCAATTATTTTGTTGAAACTACGTTCTTGTGACTAAGTTCCTGTGATGGTGATGAAATTTGTAGTTTCAGTGATAGTGAGCTATAAGTCTATAACTCATGGACATGTTCATCATTGAACTAGTATTGAGTATCCTGTTTTTTTTGTTGGACAGTTTCCATGGTTATGTTCTCAACATTCGAGCATTCTGTTGATTTTTTGTATCGCAATGTTGTCAAAAGAAAAAAGGAGGAATGTTCAAAAGCTCAACAGCTAGGTGTGACATGTTTAGCTGGTTATACCGCTGGATCCGTTGGTAGCTTTGTTTCTAATCCTGCTGACAATATAGTAGCTTCTCTTTATAACAGAAAAGCCGAGAGTCTTGTTCTGGTATTTGCTTCTTTGCAACTGCATTTGGTTTATCATTTAGTATTGTTCTGTTGTACTAATTGCGTTACACTTATTCTATGGCAGGCTATCAGAAAAATTGGGCTAGCCAATTTATTTACCAGGAGTCTTCCTATTAGAATGTTGCTGGTTGGCCCTTCTATAACCTTGCAATGGTTTTTCTACGACACTATCAAAGTTTTAGGTGGACTGTAA

Protein sequence

>MS.gene86518.t1

MAAMEGGISQELTPRYYALCTIGGMLSAGTTHLATTPLDVLKVNMQVHPIKYYSISSCFTTLLREQGPSVLWKGWTGKFFGYGAQGGCRFGLYEYFKGVYSNVLVDQHRSLVYFLSSASAEVFANLALCPFEAVKVRVQAQPSYAKGMFDGFPKVYAAEGARGFYRGLVPLLGRNIPFSMVMFSTFEHSVDFLYRNVVKRKKEECSKAQQLGVTCLAGYTAGSVGSFVSNPADNIVASLYNRKAESLVLAIRKIGLANLFTRSLPIRMLLVGPSITLQWFFYDTIKVLGGL