Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86540.t1 | XP_013453593.1 | 90.8 | 948 | 87 | 0 | 1 | 948 | 1 | 948 | 0.00E+00 | 1697.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86540.t1 | Q84W41 | 57.1 | 910 | 376 | 5 | 5 | 913 | 3 | 899 | 1.2e-310 | 1067.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86540.t1 | G7K195 | 90.8 | 948 | 87 | 0 | 1 | 948 | 33 | 980 | 0.0e+00 | 1697.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052346 | MS.gene86540 | 0.802365 | 5.81E-49 | -1.69E-46 |
| MS.gene053873 | MS.gene86540 | 0.82544 | 4.68E-54 | -1.69E-46 |
| MS.gene054486 | MS.gene86540 | 0.832037 | 1.19E-55 | -1.69E-46 |
| MS.gene055486 | MS.gene86540 | 0.826252 | 3.00E-54 | -1.69E-46 |
| MS.gene055909 | MS.gene86540 | 0.816467 | 5.45E-52 | -1.69E-46 |
| MS.gene055911 | MS.gene86540 | 0.810537 | 1.10E-50 | -1.69E-46 |
| MS.gene05995 | MS.gene86540 | 0.812925 | 3.32E-51 | -1.69E-46 |
| MS.gene060485 | MS.gene86540 | 0.825107 | 5.61E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32229 | MS.gene86540 | PPI |
| MS.gene052582 | MS.gene86540 | PPI |
| MS.gene28682 | MS.gene86540 | PPI |
| MS.gene052584 | MS.gene86540 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86540.t1 | MTR_5g024350 | 96.308 | 948 | 35 | 0 | 1 | 948 | 33 | 980 | 0.0 | 1890 |
| MS.gene86540.t1 | MTR_5g024350 | 96.308 | 948 | 35 | 0 | 1 | 948 | 1 | 948 | 0.0 | 1889 |
| MS.gene86540.t1 | MTR_8g073210 | 71.845 | 927 | 258 | 2 | 1 | 926 | 1 | 925 | 0.0 | 1403 |
| MS.gene86540.t1 | MTR_3g115910 | 56.828 | 908 | 371 | 8 | 4 | 909 | 53 | 941 | 0.0 | 1067 |
| MS.gene86540.t1 | MTR_3g115910 | 56.828 | 908 | 371 | 8 | 4 | 909 | 8 | 896 | 0.0 | 1066 |
| MS.gene86540.t1 | MTR_8g073490 | 55.809 | 921 | 388 | 10 | 1 | 911 | 1 | 912 | 0.0 | 1028 |
| MS.gene86540.t1 | MTR_8g073210 | 71.319 | 652 | 186 | 1 | 1 | 651 | 1 | 652 | 0.0 | 987 |
| MS.gene86540.t1 | MTR_8g073210 | 71.609 | 634 | 179 | 1 | 1 | 633 | 1 | 634 | 0.0 | 966 |
| MS.gene86540.t1 | MTR_2g088450 | 52.737 | 895 | 403 | 7 | 26 | 907 | 32 | 919 | 0.0 | 957 |
| MS.gene86540.t1 | MTR_3g115910 | 58.612 | 778 | 308 | 5 | 4 | 779 | 8 | 773 | 0.0 | 941 |
| MS.gene86540.t1 | MTR_2g088450 | 53.828 | 836 | 367 | 6 | 85 | 907 | 25 | 854 | 0.0 | 917 |
| MS.gene86540.t1 | MTR_2g088450 | 54.172 | 827 | 360 | 6 | 94 | 907 | 1 | 821 | 0.0 | 912 |
| MS.gene86540.t1 | MTR_8g073210 | 70.980 | 541 | 156 | 1 | 1 | 540 | 1 | 541 | 0.0 | 815 |
| MS.gene86540.t1 | MTR_2g088430 | 43.695 | 904 | 487 | 10 | 1 | 897 | 10 | 898 | 0.0 | 814 |
| MS.gene86540.t1 | MTR_2g088450 | 54.247 | 671 | 298 | 3 | 26 | 694 | 32 | 695 | 0.0 | 742 |
| MS.gene86540.t1 | MTR_3g115910 | 54.242 | 660 | 284 | 6 | 4 | 661 | 53 | 696 | 0.0 | 735 |
| MS.gene86540.t1 | MTR_3g115910 | 54.242 | 660 | 284 | 6 | 4 | 661 | 8 | 651 | 0.0 | 734 |
| MS.gene86540.t1 | MTR_2g088450 | 51.935 | 620 | 289 | 3 | 26 | 643 | 32 | 644 | 0.0 | 664 |
| MS.gene86540.t1 | MTR_2g088450 | 53.986 | 552 | 246 | 2 | 94 | 643 | 1 | 546 | 0.0 | 619 |
| MS.gene86540.t1 | MTR_2g088450 | 53.102 | 548 | 249 | 2 | 94 | 639 | 1 | 542 | 0.0 | 600 |
| MS.gene86540.t1 | MTR_3g105610 | 33.971 | 889 | 541 | 23 | 1 | 863 | 13 | 881 | 9.63e-151 | 471 |
| MS.gene86540.t1 | MTR_3g105595 | 36.036 | 777 | 463 | 19 | 108 | 863 | 1 | 764 | 2.07e-147 | 459 |
| MS.gene86540.t1 | MTR_4g087925 | 31.236 | 890 | 534 | 26 | 5 | 872 | 19 | 852 | 1.33e-117 | 382 |
| MS.gene86540.t1 | MTR_2g015270 | 28.320 | 964 | 587 | 29 | 1 | 929 | 11 | 905 | 3.13e-103 | 346 |
| MS.gene86540.t1 | MTR_2g015280 | 27.146 | 862 | 533 | 25 | 27 | 867 | 32 | 819 | 2.92e-86 | 297 |
| MS.gene86540.t1 | MTR_2g015310 | 27.483 | 866 | 530 | 26 | 34 | 874 | 41 | 833 | 9.91e-85 | 292 |
| MS.gene86540.t1 | MTR_2g015290 | 26.986 | 856 | 527 | 25 | 27 | 855 | 33 | 817 | 2.67e-81 | 283 |
| MS.gene86540.t1 | MTR_5g059920 | 28.082 | 876 | 529 | 28 | 28 | 862 | 36 | 851 | 5.94e-81 | 282 |
| MS.gene86540.t1 | MTR_0018s0240 | 28.086 | 794 | 457 | 24 | 100 | 862 | 49 | 759 | 2.80e-77 | 270 |
| MS.gene86540.t1 | MTR_2g015260 | 27.503 | 749 | 453 | 21 | 208 | 943 | 32 | 703 | 1.48e-74 | 259 |
| MS.gene86540.t1 | MTR_5g059900 | 27.419 | 806 | 482 | 24 | 94 | 862 | 3 | 742 | 6.20e-72 | 253 |
| MS.gene86540.t1 | MTR_5g059920 | 28.643 | 796 | 471 | 28 | 28 | 789 | 36 | 768 | 1.03e-70 | 250 |
| MS.gene86540.t1 | MTR_0018s0230 | 31.677 | 483 | 297 | 12 | 396 | 862 | 270 | 735 | 1.07e-64 | 234 |
| MS.gene86540.t1 | MTR_0018s0230 | 32.857 | 420 | 256 | 10 | 396 | 807 | 270 | 671 | 4.44e-55 | 204 |
| MS.gene86540.t1 | MTR_6g045087 | 32.000 | 400 | 250 | 10 | 472 | 851 | 40 | 437 | 7.07e-49 | 181 |
| MS.gene86540.t1 | MTR_5g060330 | 25.185 | 540 | 322 | 18 | 99 | 606 | 10 | 499 | 2.92e-28 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86540.t1 | AT3G51480 | 57.143 | 910 | 376 | 5 | 5 | 913 | 3 | 899 | 0.0 | 1102 |
| MS.gene86540.t1 | AT3G51480 | 57.143 | 910 | 376 | 5 | 5 | 913 | 3 | 899 | 0.0 | 1102 |
| MS.gene86540.t1 | AT1G42540 | 57.096 | 916 | 372 | 8 | 25 | 931 | 22 | 925 | 0.0 | 1072 |
| MS.gene86540.t1 | AT1G42540 | 57.096 | 916 | 372 | 8 | 25 | 931 | 22 | 925 | 0.0 | 1072 |
| MS.gene86540.t1 | AT1G42540 | 57.096 | 916 | 372 | 8 | 25 | 931 | 22 | 925 | 0.0 | 1072 |
| MS.gene86540.t1 | AT3G51480 | 58.587 | 821 | 327 | 4 | 94 | 913 | 1 | 809 | 0.0 | 1023 |
| MS.gene86540.t1 | AT4G35290 | 52.928 | 922 | 408 | 10 | 5 | 914 | 3 | 910 | 0.0 | 989 |
| MS.gene86540.t1 | AT4G35290 | 52.928 | 922 | 408 | 10 | 5 | 914 | 3 | 910 | 0.0 | 989 |
| MS.gene86540.t1 | AT4G35290 | 52.928 | 922 | 408 | 10 | 5 | 914 | 3 | 910 | 0.0 | 989 |
| MS.gene86540.t1 | AT4G35290 | 52.928 | 922 | 408 | 10 | 5 | 914 | 3 | 910 | 0.0 | 989 |
| MS.gene86540.t1 | AT4G35290 | 52.928 | 922 | 408 | 10 | 5 | 914 | 3 | 910 | 0.0 | 989 |
| MS.gene86540.t1 | AT2G17260 | 53.407 | 910 | 402 | 12 | 5 | 904 | 7 | 904 | 0.0 | 958 |
| MS.gene86540.t1 | AT3G51480 | 57.806 | 775 | 314 | 4 | 5 | 779 | 3 | 764 | 0.0 | 950 |
| MS.gene86540.t1 | AT1G05200 | 52.440 | 881 | 401 | 6 | 28 | 897 | 57 | 930 | 0.0 | 937 |
| MS.gene86540.t1 | AT1G05200 | 52.440 | 881 | 401 | 6 | 28 | 897 | 57 | 930 | 0.0 | 937 |
| MS.gene86540.t1 | AT1G05200 | 52.440 | 881 | 401 | 6 | 28 | 897 | 57 | 930 | 0.0 | 937 |
| MS.gene86540.t1 | AT2G32390 | 50.285 | 877 | 424 | 5 | 32 | 897 | 48 | 923 | 0.0 | 887 |
| MS.gene86540.t1 | AT4G35290 | 54.534 | 783 | 334 | 8 | 5 | 779 | 3 | 771 | 0.0 | 861 |
| MS.gene86540.t1 | AT2G32390 | 51.100 | 818 | 389 | 4 | 91 | 897 | 4 | 821 | 0.0 | 844 |
| MS.gene86540.t1 | AT2G32390 | 50.918 | 817 | 390 | 4 | 92 | 897 | 49 | 865 | 0.0 | 841 |
| MS.gene86540.t1 | AT1G05200 | 54.582 | 753 | 334 | 3 | 28 | 779 | 57 | 802 | 0.0 | 839 |
| MS.gene86540.t1 | AT1G05200 | 54.582 | 753 | 334 | 3 | 28 | 779 | 57 | 802 | 0.0 | 839 |
| MS.gene86540.t1 | AT2G32400 | 43.581 | 888 | 478 | 9 | 25 | 902 | 24 | 898 | 0.0 | 750 |
| MS.gene86540.t1 | AT1G42540 | 56.501 | 623 | 261 | 5 | 25 | 643 | 22 | 638 | 0.0 | 730 |
| MS.gene86540.t1 | AT2G32390 | 51.530 | 621 | 300 | 1 | 32 | 652 | 48 | 667 | 0.0 | 676 |
| MS.gene86540.t1 | AT1G05200 | 52.657 | 621 | 287 | 2 | 28 | 648 | 57 | 670 | 0.0 | 672 |
| MS.gene86540.t1 | AT2G32390 | 50.647 | 618 | 304 | 1 | 32 | 649 | 48 | 664 | 0.0 | 664 |
| MS.gene86540.t1 | AT2G32390 | 50.647 | 618 | 304 | 1 | 32 | 649 | 48 | 664 | 0.0 | 664 |
| MS.gene86540.t1 | AT1G05200 | 52.224 | 607 | 283 | 2 | 28 | 634 | 57 | 656 | 0.0 | 650 |
| MS.gene86540.t1 | AT2G32390 | 50.083 | 603 | 300 | 1 | 32 | 634 | 48 | 649 | 0.0 | 639 |
| MS.gene86540.t1 | AT5G27100 | 33.639 | 871 | 515 | 22 | 32 | 873 | 32 | 868 | 2.86e-154 | 478 |
| MS.gene86540.t1 | AT5G11180 | 34.226 | 859 | 536 | 16 | 32 | 879 | 36 | 876 | 1.75e-153 | 478 |
| MS.gene86540.t1 | AT2G29100 | 34.926 | 879 | 526 | 22 | 32 | 900 | 32 | 874 | 2.98e-152 | 474 |
| MS.gene86540.t1 | AT5G11210 | 34.229 | 856 | 517 | 19 | 68 | 905 | 14 | 841 | 5.17e-152 | 471 |
| MS.gene86540.t1 | AT2G29100 | 34.926 | 879 | 526 | 22 | 32 | 900 | 30 | 872 | 5.17e-152 | 473 |
| MS.gene86540.t1 | AT5G11210 | 34.337 | 830 | 501 | 17 | 93 | 905 | 15 | 817 | 1.40e-151 | 469 |
| MS.gene86540.t1 | AT5G11210 | 33.408 | 892 | 547 | 20 | 32 | 905 | 37 | 899 | 1.53e-151 | 471 |
| MS.gene86540.t1 | AT2G29110 | 35.223 | 829 | 503 | 16 | 32 | 852 | 34 | 836 | 4.75e-151 | 471 |
| MS.gene86540.t1 | AT2G29110 | 35.223 | 829 | 503 | 16 | 32 | 852 | 33 | 835 | 5.14e-151 | 471 |
| MS.gene86540.t1 | AT2G29120 | 32.860 | 916 | 557 | 24 | 32 | 933 | 39 | 910 | 2.57e-150 | 469 |
| MS.gene86540.t1 | AT2G24720 | 34.712 | 798 | 482 | 17 | 32 | 815 | 32 | 804 | 1.22e-145 | 456 |
| MS.gene86540.t1 | AT4G31710 | 34.143 | 823 | 471 | 21 | 30 | 817 | 7 | 793 | 4.42e-143 | 449 |
| MS.gene86540.t1 | AT5G11210 | 36.402 | 706 | 407 | 15 | 90 | 779 | 20 | 699 | 2.72e-140 | 436 |
| MS.gene86540.t1 | AT4G31710 | 33.618 | 821 | 471 | 20 | 30 | 817 | 30 | 809 | 4.66e-140 | 441 |
| MS.gene86540.t1 | AT5G11210 | 36.273 | 703 | 406 | 15 | 93 | 779 | 15 | 691 | 1.07e-139 | 434 |
| MS.gene86540.t1 | AT5G11210 | 34.424 | 764 | 458 | 16 | 32 | 779 | 37 | 773 | 1.11e-139 | 437 |
| MS.gene86540.t1 | AT5G11210 | 34.424 | 764 | 458 | 16 | 32 | 779 | 37 | 773 | 1.11e-139 | 437 |
| MS.gene86540.t1 | AT5G11210 | 36.273 | 703 | 406 | 15 | 93 | 779 | 15 | 691 | 1.37e-139 | 434 |
| MS.gene86540.t1 | AT5G11210 | 36.273 | 703 | 406 | 15 | 93 | 779 | 15 | 691 | 1.37e-139 | 434 |
| MS.gene86540.t1 | AT5G11210 | 34.424 | 764 | 458 | 16 | 32 | 779 | 37 | 773 | 1.53e-139 | 436 |
| MS.gene86540.t1 | AT2G24710 | 31.972 | 857 | 544 | 17 | 43 | 882 | 42 | 876 | 1.22e-135 | 429 |
| MS.gene86540.t1 | AT2G24710 | 31.972 | 857 | 544 | 17 | 43 | 882 | 66 | 900 | 1.42e-135 | 429 |
| MS.gene86540.t1 | AT2G24710 | 33.110 | 746 | 471 | 13 | 43 | 779 | 66 | 792 | 9.91e-128 | 405 |
| MS.gene86540.t1 | AT5G11180 | 31.119 | 858 | 503 | 18 | 32 | 879 | 36 | 815 | 5.84e-118 | 382 |
| MS.gene86540.t1 | AT3G07520 | 28.089 | 858 | 529 | 23 | 32 | 864 | 46 | 840 | 5.55e-95 | 319 |
| MS.gene86540.t1 | AT5G48400 | 28.402 | 845 | 519 | 24 | 32 | 859 | 40 | 815 | 1.54e-91 | 310 |
| MS.gene86540.t1 | AT5G48410 | 27.518 | 854 | 530 | 23 | 32 | 869 | 42 | 822 | 5.42e-89 | 303 |
| MS.gene86540.t1 | AT5G48400 | 28.889 | 765 | 460 | 23 | 32 | 779 | 40 | 737 | 6.25e-86 | 292 |
| MS.gene86540.t1 | AT5G48410 | 28.272 | 764 | 461 | 22 | 32 | 779 | 42 | 734 | 5.75e-84 | 287 |
| MS.gene86540.t1 | AT3G04110 | 26.268 | 887 | 547 | 24 | 6 | 870 | 4 | 805 | 4.98e-80 | 277 |
| MS.gene86540.t1 | AT5G48410 | 26.216 | 843 | 506 | 23 | 32 | 858 | 42 | 784 | 4.42e-75 | 264 |
| MS.gene86540.t1 | AT3G04110 | 28.198 | 688 | 425 | 18 | 6 | 683 | 4 | 632 | 3.20e-73 | 257 |
| MS.gene86540.t1 | AT5G48410 | 26.097 | 843 | 503 | 24 | 32 | 858 | 42 | 780 | 5.08e-72 | 255 |
| MS.gene86540.t1 | AT5G11210 | 34.694 | 392 | 242 | 7 | 522 | 905 | 6 | 391 | 2.85e-68 | 234 |
| MS.gene86540.t1 | AT3G04110 | 24.803 | 887 | 532 | 24 | 6 | 870 | 4 | 777 | 5.34e-67 | 240 |
Find 198 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTGGAATGAATTGTTTC+TGG | 0.166017 | 5.1:-15026020 | None:intergenic |
| TAAGCTTTCAATGCCTTTAA+TGG | 0.174089 | 5.1:-15027394 | None:intergenic |
| TGGAACTGTAGTTTGGATTT+TGG | 0.188541 | 5.1:+15026633 | MS.gene86540:CDS |
| CTGAGCATCATAATCTTTAT+TGG | 0.204930 | 5.1:-15028304 | None:intergenic |
| TCGCAACACTAAACACTTTC+GGG | 0.205231 | 5.1:-15025437 | None:intergenic |
| TACAAATCCCCAGCCGTTTC+TGG | 0.207905 | 5.1:-15027655 | None:intergenic |
| AACCACATCCTTGGTGTAAA+TGG | 0.226841 | 5.1:-15026583 | None:intergenic |
| GGCTTCTGAGCTGTGTTTCC+AGG | 0.230286 | 5.1:-15026089 | None:intergenic |
| TTGGTCTTGCCGAGAATATT+TGG | 0.235404 | 5.1:-15024624 | None:intergenic |
| GGCATTGAAAGCTTAGTAAT+TGG | 0.241024 | 5.1:+15027402 | MS.gene86540:CDS |
| AAAGAAAGTTTGTTTCTAAA+TGG | 0.241296 | 5.1:+15025613 | MS.gene86540:CDS |
| CCATATGGAATAAACTTATA+AGG | 0.245835 | 5.1:-15026275 | None:intergenic |
| ACTTGTTCACTTCCACAATT+AGG | 0.259020 | 5.1:-15028354 | None:intergenic |
| CCTTATAAGTTTATTCCATA+TGG | 0.280340 | 5.1:+15026275 | MS.gene86540:CDS |
| GCTCCAATATTTACAATATC+AGG | 0.286846 | 5.1:-15024522 | None:intergenic |
| AACTATTTAATCCAAGATAT+TGG | 0.289008 | 5.1:+15027465 | MS.gene86540:CDS |
| CCTGAAGTTATTGCCTGGTT+TGG | 0.296388 | 5.1:-15026036 | None:intergenic |
| CCGATCAAAGAGAAAGAAAA+TGG | 0.305618 | 5.1:+15028233 | MS.gene86540:CDS |
| AAGCTTTCAATGCCTTTAAT+GGG | 0.306277 | 5.1:-15027393 | None:intergenic |
| TTCGCAACACTAAACACTTT+CGG | 0.306463 | 5.1:-15025438 | None:intergenic |
| ATCTCCTCTGCAGTTGCTTC+GGG | 0.310294 | 5.1:-15025342 | None:intergenic |
| AGGCCTGATATTGTAAATAT+TGG | 0.310296 | 5.1:+15024519 | MS.gene86540:CDS |
| CATCAACCATGGTTAAAGTT+TGG | 0.314545 | 5.1:+15024430 | None:intergenic |
| AGACACAATGTGGCAATAAT+TGG | 0.321739 | 5.1:+15025018 | MS.gene86540:CDS |
| CAAGTTGAAGCTCTCTCTTC+AGG | 0.325134 | 5.1:+15024644 | MS.gene86540:CDS |
| TGAGATTCTGCAACGCTTCT+CGG | 0.330906 | 5.1:-15025301 | None:intergenic |
| CATGGTTAAAGTTTGGCTAT+TGG | 0.335807 | 5.1:+15024437 | None:intergenic |
| AAATGCTATTACCTGTGATT+TGG | 0.336025 | 5.1:+15026066 | MS.gene86540:CDS |
| ATTGTCTACCATTTGCAAAA+TGG | 0.336897 | 5.1:-15027920 | None:intergenic |
| TATCTCCTCTGCAGTTGCTT+CGG | 0.342196 | 5.1:-15025343 | None:intergenic |
| CTAGTTTCTGTCTCCCTAAC+AGG | 0.342346 | 5.1:-15026541 | None:intergenic |
| TATTAGTTGGAACTGTAGTT+TGG | 0.343379 | 5.1:+15026626 | MS.gene86540:CDS |
| CAGCCATCTCCACGCATAAC+TGG | 0.344607 | 5.1:+15028324 | MS.gene86540:CDS |
| ACGATCCTGAGCTAGGGTTT+TGG | 0.345127 | 5.1:-15028155 | None:intergenic |
| ATCATCAATGTGGTTGGAAC+CGG | 0.347020 | 5.1:+15025945 | MS.gene86540:CDS |
| TAGTGGTAGTAGCACCTGTT+AGG | 0.348845 | 5.1:+15026527 | MS.gene86540:CDS |
| ACTAAACCAGACTCAATATA+TGG | 0.349812 | 5.1:-15026508 | None:intergenic |
| GTCGTTGTGTGCTACTTATA+TGG | 0.356677 | 5.1:+15027292 | MS.gene86540:CDS |
| TTTAGTGTTGCGAAGAATCT+TGG | 0.359196 | 5.1:+15025447 | MS.gene86540:CDS |
| AGTAGTTCACGCCAACACTA+TGG | 0.359304 | 5.1:+15025410 | MS.gene86540:CDS |
| AGTGCTCTAGCAGCTTCTTC+AGG | 0.368684 | 5.1:-15027522 | None:intergenic |
| GTCTAATCACTCTGGATTAT+CGG | 0.372751 | 5.1:+15025989 | MS.gene86540:CDS |
| AGCTCAGAAGCCTCGCGGTT+GGG | 0.374479 | 5.1:+15026100 | MS.gene86540:CDS |
| TGGTGTAAATGGAGCCAAAA+AGG | 0.374511 | 5.1:-15026572 | None:intergenic |
| GAAAATACAGTGAGCACATT+TGG | 0.377522 | 5.1:+15027270 | MS.gene86540:CDS |
| GCAGACCTTGTTGACTACTA+TGG | 0.377656 | 5.1:+15025201 | MS.gene86540:CDS |
| CTTGAGAAGGGTCCTCAAAA+TGG | 0.382532 | 5.1:+15027543 | MS.gene86540:CDS |
| CTTATAAGTTTATTCCATAT+GGG | 0.389021 | 5.1:+15026276 | MS.gene86540:CDS |
| CGGTGTAAATTTACTATTGT+AGG | 0.389253 | 5.1:+15027621 | MS.gene86540:CDS |
| CAGGAAGATTCTAAATATAG+AGG | 0.393980 | 5.1:+15024663 | MS.gene86540:CDS |
| ACTCGCGGAAATACCGATAA+TGG | 0.396740 | 5.1:+15025645 | MS.gene86540:CDS |
| CTTAATAGCCTTCCATTGTT+CGG | 0.398580 | 5.1:-15026128 | None:intergenic |
| GGTCTCGGAGGATCGGTTAT+TGG | 0.400571 | 5.1:+15025967 | MS.gene86540:CDS |
| AATGGAAGGCTATTAAGAAT+TGG | 0.401016 | 5.1:+15026134 | MS.gene86540:CDS |
| GATAACAAATGTGCTAGTTC+AGG | 0.402634 | 5.1:+15025362 | MS.gene86540:CDS |
| ACTCAGCCATATATTGAGTC+TGG | 0.404527 | 5.1:+15026502 | MS.gene86540:CDS |
| CTCTCCCTGAAGTTATTGCC+TGG | 0.405725 | 5.1:-15026041 | None:intergenic |
| CCAAACCAGGCAATAACTTC+AGG | 0.406252 | 5.1:+15026036 | MS.gene86540:CDS |
| ATAATCTTTATTGGAGATGA+TGG | 0.413687 | 5.1:-15028295 | None:intergenic |
| AGGAACGGAATTGGTGCATT+AGG | 0.414414 | 5.1:+15025267 | MS.gene86540:CDS |
| ACTCATCAATACCAATATCT+TGG | 0.416136 | 5.1:-15027476 | None:intergenic |
| TACAAAGGATTCATGACAAA+TGG | 0.421966 | 5.1:+15027950 | MS.gene86540:CDS |
| CGGACAAGCTCGGTGTTACT+AGG | 0.423128 | 5.1:-15026314 | None:intergenic |
| CATATGGAATAAACTTATAA+GGG | 0.429868 | 5.1:-15026274 | None:intergenic |
| TTTGCAAAATGGCAGTTGAT+AGG | 0.431842 | 5.1:-15027909 | None:intergenic |
| TGGCGGTAACTAACGCCTAT+TGG | 0.432370 | 5.1:-15026161 | None:intergenic |
| AATCATTTGAGAATGTGATT+TGG | 0.434174 | 5.1:-15025758 | None:intergenic |
| GTAATTGGCAAAGAACCAAT+TGG | 0.435302 | 5.1:+15027417 | MS.gene86540:CDS |
| GATCTGTGGATCAGCATGTT+TGG | 0.435879 | 5.1:+15028056 | MS.gene86540:CDS |
| GTATACATTGATGATGATAA+TGG | 0.436911 | 5.1:+15025243 | MS.gene86540:CDS |
| AACTTATAAGGGACAGCATA+AGG | 0.436939 | 5.1:-15026263 | None:intergenic |
| TGACAAGTTCTGATAAAGAA+TGG | 0.437045 | 5.1:-15025150 | None:intergenic |
| CTGGTACTTGCGAGACAAAT+TGG | 0.437291 | 5.1:-15026181 | None:intergenic |
| CGCGTGCTGTCAACACTCCT+TGG | 0.443293 | 5.1:-15025566 | None:intergenic |
| CTATTACCTGTGATTTGGCC+TGG | 0.447463 | 5.1:+15026071 | MS.gene86540:CDS |
| ATATATTGAGTCTGGTTTAG+TGG | 0.447740 | 5.1:+15026510 | MS.gene86540:CDS |
| GGCTTCTCTTCAACTGTGGC+AGG | 0.448100 | 5.1:+15024480 | MS.gene86540:CDS |
| TGCGGTCGACGATGTAAATT+CGG | 0.449520 | 5.1:+15024599 | MS.gene86540:CDS |
| AAGTCCAAGAGGGCCATTAT+CGG | 0.451799 | 5.1:-15025658 | None:intergenic |
| ATTGCTAATGGTGAGTCTCT+TGG | 0.452500 | 5.1:-15027883 | None:intergenic |
| CAATTTGTCTCGCAAGTACC+AGG | 0.453271 | 5.1:+15026182 | MS.gene86540:CDS |
| AAGGGACAGCATAAGGCAAT+AGG | 0.454426 | 5.1:-15026256 | None:intergenic |
| TCACAGCGATCTTTATCAAA+TGG | 0.455581 | 5.1:+15025170 | MS.gene86540:CDS |
| GGAGACAGAAACTAGTGCTT+TGG | 0.456942 | 5.1:+15026549 | MS.gene86540:CDS |
| AATCTTGGAATGATGGGAAC+TGG | 0.458661 | 5.1:+15025462 | MS.gene86540:CDS |
| GAACCTTGAGTGTAACCAAT+TGG | 0.458763 | 5.1:-15027432 | None:intergenic |
| CTGAAGAGAGAGCTTCAACT+TGG | 0.460309 | 5.1:-15024643 | None:intergenic |
| TTGTTCTTACCATCCCCATA+TGG | 0.461876 | 5.1:-15026290 | None:intergenic |
| TTAAGAATTGGAGTACCAAT+AGG | 0.462054 | 5.1:+15026146 | MS.gene86540:CDS |
| AATACCGATAATGGCCCTCT+TGG | 0.465354 | 5.1:+15025654 | MS.gene86540:CDS |
| AACCCTAGCTCAGGATCGTC+GGG | 0.470053 | 5.1:+15028159 | MS.gene86540:CDS |
| ACTGGTTCTGTTCCTAATTG+TGG | 0.470541 | 5.1:+15028342 | MS.gene86540:CDS |
| ACGCGTGCACACACCAGATT+CGG | 0.475897 | 5.1:+15025584 | MS.gene86540:CDS |
| CCAGGCACAGATACATTTCA+AGG | 0.476169 | 5.1:+15026200 | MS.gene86540:CDS |
| CTTGTCCGTCTGATAACAAC+TGG | 0.476371 | 5.1:+15026329 | MS.gene86540:CDS |
| ATGTGGTTGGAACCGGGTCT+CGG | 0.476531 | 5.1:+15025952 | MS.gene86540:CDS |
| TGCAAGGAAGATGTCGATAT+AGG | 0.479803 | 5.1:-15027595 | None:intergenic |
| GCAGTTGCTTCGGGTCTCAC+AGG | 0.488039 | 5.1:-15025333 | None:intergenic |
| GACAAGTTCTGATAAAGAAT+GGG | 0.488714 | 5.1:-15025149 | None:intergenic |
| GTAGTTCACGCCAACACTAT+GGG | 0.489805 | 5.1:+15025411 | MS.gene86540:CDS |
| ACATTGATGATTTCATATGT+AGG | 0.491964 | 5.1:-15025933 | None:intergenic |
| GGTCAAGAGTTCACCAGAAA+CGG | 0.492133 | 5.1:+15027642 | MS.gene86540:CDS |
| TGATGGGAACTGGTTATGTA+TGG | 0.493409 | 5.1:+15025472 | MS.gene86540:CDS |
| TGGGAATTGAAGTGAAGAAA+GGG | 0.497041 | 5.1:-15025130 | None:intergenic |
| CTCCATTTACACCAAGGATG+TGG | 0.498261 | 5.1:+15026581 | MS.gene86540:CDS |
| AGCTGCTAGAGCACTTGAGA+AGG | 0.498564 | 5.1:+15027530 | MS.gene86540:CDS |
| AAAGCTGAAAATGAGATAAG+AGG | 0.499953 | 5.1:-15025099 | None:intergenic |
| AAACCCGACGATCCTGAGCT+AGG | 0.500062 | 5.1:-15028162 | None:intergenic |
| GATAATGGAAGGAACGGAAT+TGG | 0.500398 | 5.1:+15025258 | MS.gene86540:CDS |
| TAAATTTACACCGGCTTGCA+AGG | 0.500407 | 5.1:-15027611 | None:intergenic |
| AATTCGGATCCAAATATTCT+CGG | 0.501823 | 5.1:+15024615 | MS.gene86540:CDS |
| ATCTCTTATAGAGGTAGTGA+GGG | 0.507274 | 5.1:+15028261 | MS.gene86540:CDS |
| GTTGATAGGTCAATTGCTAA+TGG | 0.508345 | 5.1:-15027895 | None:intergenic |
| AAGAGTTCACCAGAAACGGC+TGG | 0.511076 | 5.1:+15027646 | MS.gene86540:CDS |
| AGTGGTAGTAGCACCTGTTA+GGG | 0.511309 | 5.1:+15026528 | MS.gene86540:CDS |
| CCTTGAAATGTATCTGTGCC+TGG | 0.511367 | 5.1:-15026200 | None:intergenic |
| CTCTACTAATATACTTCATA+CGG | 0.511636 | 5.1:+15028082 | MS.gene86540:CDS |
| TATGAAATCATCAATGTGGT+TGG | 0.513116 | 5.1:+15025939 | MS.gene86540:CDS |
| TGCGAAGAATCTTGGAATGA+TGG | 0.515559 | 5.1:+15025455 | MS.gene86540:CDS |
| ATGGGAATTGAAGTGAAGAA+AGG | 0.515929 | 5.1:-15025131 | None:intergenic |
| GTTAACATGACAGGTGTGAC+AGG | 0.520717 | 5.1:+15025873 | MS.gene86540:CDS |
| GGAACCGGGTCTCGGAGGAT+CGG | 0.535259 | 5.1:+15025960 | MS.gene86540:CDS |
| GGTTATTGGTCTAATCACTC+TGG | 0.537000 | 5.1:+15025981 | MS.gene86540:CDS |
| GAACCAGTTATGCGTGGAGA+TGG | 0.540357 | 5.1:-15028327 | None:intergenic |
| AGAGTTCACCAGAAACGGCT+GGG | 0.541125 | 5.1:+15027647 | MS.gene86540:CDS |
| GAACCAATTGGTTACACTCA+AGG | 0.542568 | 5.1:+15027429 | MS.gene86540:CDS |
| AACCCGACGATCCTGAGCTA+GGG | 0.542874 | 5.1:-15028161 | None:intergenic |
| CCTGACCAAAACCCTAGCTC+AGG | 0.544007 | 5.1:+15028150 | MS.gene86540:CDS |
| AAGTTTATTCCATATGGGGA+TGG | 0.544461 | 5.1:+15026281 | MS.gene86540:CDS |
| ATGGAGAGAATCTCTTATAG+AGG | 0.548030 | 5.1:+15028252 | MS.gene86540:CDS |
| CAAACCAGGCAATAACTTCA+GGG | 0.551751 | 5.1:+15026037 | MS.gene86540:CDS |
| AAACCCTAGCTCAGGATCGT+CGG | 0.552997 | 5.1:+15028158 | MS.gene86540:CDS |
| GCTGCTAGAGCACTTGAGAA+GGG | 0.555149 | 5.1:+15027531 | MS.gene86540:CDS |
| TGGGGACTGTATGTGATCTG+TGG | 0.555651 | 5.1:+15028042 | MS.gene86540:CDS |
| AATCTCTTATAGAGGTAGTG+AGG | 0.556154 | 5.1:+15028260 | MS.gene86540:CDS |
| CAGCTCAGAAGCCTCGCGGT+TGG | 0.558518 | 5.1:+15026099 | MS.gene86540:CDS |
| ACCTTGTTGACTACTATGGA+TGG | 0.559074 | 5.1:+15025205 | MS.gene86540:CDS |
| TTATAAGTTTATTCCATATG+GGG | 0.559101 | 5.1:+15026277 | MS.gene86540:CDS |
| ATTTATGAAGTTAACATGAC+AGG | 0.559107 | 5.1:+15025864 | MS.gene86540:CDS |
| TGAGCTGTTACAGAACTATG+AGG | 0.559881 | 5.1:-15025042 | None:intergenic |
| TCATCAATGTGGTTGGAACC+GGG | 0.562645 | 5.1:+15025946 | MS.gene86540:CDS |
| CAGGAATTTGACGGTGCAGT+AGG | 0.562833 | 5.1:+15026436 | MS.gene86540:intron |
| TCCATTGCCATCTGATGCAA+TGG | 0.562987 | 5.1:+15025536 | MS.gene86540:CDS |
| GTGTTTCCAGGCCAAATCAC+AGG | 0.565395 | 5.1:-15026077 | None:intergenic |
| GATGATGATAATGGAAGGAA+CGG | 0.567888 | 5.1:+15025252 | MS.gene86540:CDS |
| AGCTTTCAATGCCTTTAATG+GGG | 0.571429 | 5.1:-15027392 | None:intergenic |
| GCTGTGACAAACCACATCCT+TGG | 0.572660 | 5.1:-15026592 | None:intergenic |
| GATGCATTGAACATCTTCGA+TGG | 0.577411 | 5.1:+15025819 | MS.gene86540:CDS |
| ATATTGGTATTGATGAGTCT+AGG | 0.579574 | 5.1:+15027481 | MS.gene86540:CDS |
| TCGACATCTTCCTTGCAAGC+CGG | 0.580299 | 5.1:+15027601 | MS.gene86540:CDS |
| AATAGCAGAAAGAAAAGCAG+TGG | 0.580483 | 5.1:-15025499 | None:intergenic |
| ATATCATCCATTGCATCAGA+TGG | 0.582487 | 5.1:-15025543 | None:intergenic |
| GCGAAGAATCTTGGAATGAT+GGG | 0.585664 | 5.1:+15025456 | MS.gene86540:CDS |
| CAGGCATTCATAATACATCA+AGG | 0.587086 | 5.1:+15024499 | MS.gene86540:CDS |
| CAATAGCCAAACTTTAACCA+TGG | 0.590621 | 5.1:-15024436 | None:intergenic |
| AACAAATGTGCTAGTTCAGG+TGG | 0.591116 | 5.1:+15025365 | MS.gene86540:CDS |
| GCTCTAATGATTCTCTACAA+TGG | 0.591176 | 5.1:+15024459 | MS.gene86540:CDS |
| TCCATTGCATCAGATGGCAA+TGG | 0.602552 | 5.1:-15025537 | None:intergenic |
| CAATGGCTTCTCTTCAACTG+TGG | 0.606085 | 5.1:+15024476 | MS.gene86540:CDS |
| AGTAGAGCTTGTTTAACACA+AGG | 0.608489 | 5.1:+15027979 | MS.gene86540:CDS |
| ATTGAAGTGAAGAAAGGGTA+GGG | 0.610945 | 5.1:-15025125 | None:intergenic |
| AGGGTGAATGATGAATTTAG+AGG | 0.611358 | 5.1:+15026661 | MS.gene86540:CDS |
| TGTTATCAGACGGACAAGCT+CGG | 0.614402 | 5.1:-15026324 | None:intergenic |
| GAGTTCACCAGAAACGGCTG+GGG | 0.618854 | 5.1:+15027648 | MS.gene86540:CDS |
| ATCTTTATTGGAGATGATGG+AGG | 0.618940 | 5.1:-15028292 | None:intergenic |
| ATAACCGATCCTCCGAGACC+CGG | 0.622653 | 5.1:-15025964 | None:intergenic |
| AATTGAAGTGAAGAAAGGGT+AGG | 0.623429 | 5.1:-15025126 | None:intergenic |
| TCACACCAGTTGTTATCAGA+CGG | 0.627621 | 5.1:-15026334 | None:intergenic |
| GCTTTCAATGCCTTTAATGG+GGG | 0.630168 | 5.1:-15027391 | None:intergenic |
| CTACAATAGTAAATTTACAC+CGG | 0.630833 | 5.1:-15027620 | None:intergenic |
| ACATTGATGATGATAATGGA+AGG | 0.631961 | 5.1:+15025247 | MS.gene86540:CDS |
| TAGACAATGGGGACTTACAA+AGG | 0.633097 | 5.1:+15027935 | MS.gene86540:CDS |
| TCTTATAGAGGTAGTGAGGG+AGG | 0.636380 | 5.1:+15028264 | MS.gene86540:CDS |
| TTTCATATGTAGGATTAACA+AGG | 0.639032 | 5.1:-15025923 | None:intergenic |
| GTACTTGCGAGACAAATTGG+CGG | 0.642717 | 5.1:-15026178 | None:intergenic |
| GCATTGAACATCTTCGATGG+AGG | 0.646368 | 5.1:+15025822 | MS.gene86540:CDS |
| TTGGAATGAATTGTTTCTGG+AGG | 0.646837 | 5.1:-15026017 | None:intergenic |
| TCCATCCATAGTAGTCAACA+AGG | 0.646917 | 5.1:-15025206 | None:intergenic |
| GATGCAATGGATGATATCCA+AGG | 0.647811 | 5.1:+15025549 | MS.gene86540:CDS |
| GAGCTGTTACAGAACTATGA+GGG | 0.647851 | 5.1:-15025041 | None:intergenic |
| GTATATCAAGCACCGCTCAG+AGG | 0.649063 | 5.1:+15028116 | MS.gene86540:CDS |
| ATGGAGGAAACACATTGCGT+AGG | 0.650471 | 5.1:+15025838 | MS.gene86540:CDS |
| TAGTTCACGCCAACACTATG+GGG | 0.654856 | 5.1:+15025412 | MS.gene86540:CDS |
| GAAACAATTCATTCCAAACC+AGG | 0.659152 | 5.1:+15026023 | MS.gene86540:CDS |
| GGAACAGAACCAGTTATGCG+TGG | 0.659697 | 5.1:-15028333 | None:intergenic |
| GAGACCCGAAGCAACTGCAG+AGG | 0.663454 | 5.1:+15025338 | MS.gene86540:CDS |
| AAATGGCAAAACTTGACTCG+CGG | 0.664471 | 5.1:+15025630 | MS.gene86540:CDS |
| TTTGCAAATGGTAGACAATG+GGG | 0.667655 | 5.1:+15027924 | MS.gene86540:CDS |
| TACATATGAAATCATCAATG+TGG | 0.671358 | 5.1:+15025935 | MS.gene86540:CDS |
| AGTTCACGCCAACACTATGG+GGG | 0.676435 | 5.1:+15025413 | MS.gene86540:CDS |
| GAGAAGGGTCCTCAAAATGG+CGG | 0.676519 | 5.1:+15027546 | MS.gene86540:CDS |
| TGGTTGGAACCGGGTCTCGG+AGG | 0.677436 | 5.1:+15025955 | MS.gene86540:CDS |
| AAGAAAGCTGTTGAACTGTG+AGG | 0.698394 | 5.1:-15027368 | None:intergenic |
| GGTCATGGCTAGACACAATG+TGG | 0.699792 | 5.1:+15025008 | MS.gene86540:CDS |
| GTTCACGCCAACACTATGGG+GGG | 0.717244 | 5.1:+15025414 | MS.gene86540:CDS |
| AACACAGCTCAGAAGCCTCG+CGG | 0.732843 | 5.1:+15026095 | MS.gene86540:CDS |
| TCAAAGTTATCTACACTACG+TGG | 0.734230 | 5.1:+15025780 | MS.gene86540:CDS |
| GAGAATCAAGTTCCTCTGAG+CGG | 0.762406 | 5.1:-15028128 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTGATTTTAACATGTTT+AGG | + | chr5.1:15026859-15026878 | MS.gene86540:intron | 15.0% |
| !!! | GGTTTTGAATAAATTTATTT+TGG | - | chr5.1:15027038-15027057 | None:intergenic | 15.0% |
| !!! | TCACATTAATTCTTTTAAAT+TGG | - | chr5.1:15027725-15027744 | None:intergenic | 15.0% |
| !!! | TGGAATTTTATTAATTTCAT+GGG | + | chr5.1:15027773-15027792 | MS.gene86540:intron | 15.0% |
| !!! | TTTAAGTCAAATCTTTTTTA+TGG | - | chr5.1:15024873-15024892 | None:intergenic | 15.0% |
| !! | AACTATTTAATCCAAGATAT+TGG | + | chr5.1:15027465-15027484 | MS.gene86540:CDS | 20.0% |
| !! | CATATGGAATAAACTTATAA+GGG | - | chr5.1:15026277-15026296 | None:intergenic | 20.0% |
| !! | CATGAAATTAATAAAATTCC+AGG | - | chr5.1:15027774-15027793 | None:intergenic | 20.0% |
| !! | CTTATAAGTTTATTCCATAT+GGG | + | chr5.1:15026276-15026295 | MS.gene86540:CDS | 20.0% |
| !! | GTTTAAAAAAGGTTCAATAT+TGG | - | chr5.1:15026759-15026778 | None:intergenic | 20.0% |
| !! | TTAAAACTAAAATTCACGTT+TGG | - | chr5.1:15026944-15026963 | None:intergenic | 20.0% |
| !! | TTATAAGTTTATTCCATATG+GGG | + | chr5.1:15026277-15026296 | MS.gene86540:CDS | 20.0% |
| !!! | AAAGAAAGTTTGTTTCTAAA+TGG | + | chr5.1:15025613-15025632 | MS.gene86540:CDS | 20.0% |
| !!! | AAATCTTTTTTATGGTCTAA+CGG | - | chr5.1:15024865-15024884 | None:intergenic | 20.0% |
| !!! | AACAAATGGTTACTATTTTT+TGG | + | chr5.1:15026695-15026714 | MS.gene86540:CDS | 20.0% |
| !!! | ATAAGCGTAAATTTTTTACA+TGG | - | chr5.1:15024938-15024957 | None:intergenic | 20.0% |
| !!! | ATAGTAACCATTTGTTTTTT+AGG | - | chr5.1:15026691-15026710 | None:intergenic | 20.0% |
| !!! | ATCATGTCAATAATCTTTTA+TGG | + | chr5.1:15026359-15026378 | MS.gene86540:intron | 20.0% |
| !!! | CTGGAATTTTATTAATTTCA+TGG | + | chr5.1:15027772-15027791 | MS.gene86540:intron | 20.0% |
| !!! | TTGATGCATTTTTTAAACAA+GGG | + | chr5.1:15025733-15025752 | MS.gene86540:CDS | 20.0% |
| ! | AATCATTTGAGAATGTGATT+TGG | - | chr5.1:15025761-15025780 | None:intergenic | 25.0% |
| ! | AATGAAACTTGATTACTCAA+AGG | - | chr5.1:15027231-15027250 | None:intergenic | 25.0% |
| ! | ACAATTTCTTGCAACAAAAT+TGG | + | chr5.1:15027699-15027718 | MS.gene86540:intron | 25.0% |
| ! | ATAATCTTTATTGGAGATGA+TGG | - | chr5.1:15028298-15028317 | None:intergenic | 25.0% |
| ! | ATTTATGAAGTTAACATGAC+AGG | + | chr5.1:15025864-15025883 | MS.gene86540:CDS | 25.0% |
| ! | CCATATGGAATAAACTTATA+AGG | - | chr5.1:15026278-15026297 | None:intergenic | 25.0% |
| ! | CCTTATAAGTTTATTCCATA+TGG | + | chr5.1:15026275-15026294 | MS.gene86540:CDS | 25.0% |
| ! | CTACAATAGTAAATTTACAC+CGG | - | chr5.1:15027623-15027642 | None:intergenic | 25.0% |
| ! | CTCTACTAATATACTTCATA+CGG | + | chr5.1:15028082-15028101 | MS.gene86540:CDS | 25.0% |
| ! | TAACTTGAAGTTGAGATTAA+AGG | + | chr5.1:15026909-15026928 | MS.gene86540:intron | 25.0% |
| ! | TAATGCATGCAATATTTATG+TGG | + | chr5.1:15026793-15026812 | MS.gene86540:intron | 25.0% |
| ! | TACATATGAAATCATCAATG+TGG | + | chr5.1:15025935-15025954 | MS.gene86540:CDS | 25.0% |
| ! | TACTACAACAAGAACAAAAA+TGG | + | chr5.1:15026471-15026490 | MS.gene86540:CDS | 25.0% |
| ! | TTTCATATGTAGGATTAACA+AGG | - | chr5.1:15025926-15025945 | None:intergenic | 25.0% |
| !! | ACATTGATGATTTCATATGT+AGG | - | chr5.1:15025936-15025955 | None:intergenic | 25.0% |
| !! | ACTCAAACTAAAAAGCTTTT+GGG | + | chr5.1:15028023-15028042 | MS.gene86540:CDS | 25.0% |
| !! | CAATAATCTTTTATGGAGTT+TGG | + | chr5.1:15026366-15026385 | MS.gene86540:intron | 25.0% |
| !! | TATGTAATATACAGTTTTGC+AGG | + | chr5.1:15024987-15025006 | MS.gene86540:intron | 25.0% |
| !! | TGAATAACAATTTTAGACTC+TGG | - | chr5.1:15027824-15027843 | None:intergenic | 25.0% |
| !! | TGATTTTTGAATTTTCACAC+AGG | + | chr5.1:15026417-15026436 | MS.gene86540:intron | 25.0% |
| !! | TTTTCTTTCAATACTAGTGT+TGG | + | chr5.1:15024549-15024568 | MS.gene86540:CDS | 25.0% |
| !!! | CTTGATGCATTTTTTAAACA+AGG | + | chr5.1:15025732-15025751 | MS.gene86540:CDS | 25.0% |
| !!! | GTATACATTGATGATGATAA+TGG | + | chr5.1:15025243-15025262 | MS.gene86540:CDS | 25.0% |
| AAAGCTGAAAATGAGATAAG+AGG | - | chr5.1:15025102-15025121 | None:intergenic | 30.0% | |
| AAATGCTATTACCTGTGATT+TGG | + | chr5.1:15026066-15026085 | MS.gene86540:CDS | 30.0% | |
| AAGCTTTCAATGCCTTTAAT+GGG | - | chr5.1:15027396-15027415 | None:intergenic | 30.0% | |
| AATGGAAGGCTATTAAGAAT+TGG | + | chr5.1:15026134-15026153 | MS.gene86540:CDS | 30.0% | |
| AATTCGGATCCAAATATTCT+CGG | + | chr5.1:15024615-15024634 | MS.gene86540:CDS | 30.0% | |
| ACAAAAAACTAAGTCCAAGA+GGG | - | chr5.1:15025671-15025690 | None:intergenic | 30.0% | |
| ACTAAACCAGACTCAATATA+TGG | - | chr5.1:15026511-15026530 | None:intergenic | 30.0% | |
| ACTCATCAATACCAATATCT+TGG | - | chr5.1:15027479-15027498 | None:intergenic | 30.0% | |
| AGGCCTGATATTGTAAATAT+TGG | + | chr5.1:15024519-15024538 | MS.gene86540:CDS | 30.0% | |
| ATGTCATAGAAGACAAGAAT+TGG | - | chr5.1:15027185-15027204 | None:intergenic | 30.0% | |
| ATTGCATGCATTATTAGCAT+TGG | - | chr5.1:15026786-15026805 | None:intergenic | 30.0% | |
| ATTGTCTACCATTTGCAAAA+TGG | - | chr5.1:15027923-15027942 | None:intergenic | 30.0% | |
| CAGGAAGATTCTAAATATAG+AGG | + | chr5.1:15024663-15024682 | MS.gene86540:CDS | 30.0% | |
| CGGTGTAAATTTACTATTGT+AGG | + | chr5.1:15027621-15027640 | MS.gene86540:CDS | 30.0% | |
| CTGAGCATCATAATCTTTAT+TGG | - | chr5.1:15028307-15028326 | None:intergenic | 30.0% | |
| CTTGTCTTCTATGACATATA+TGG | + | chr5.1:15027188-15027207 | MS.gene86540:intron | 30.0% | |
| GCTCCAATATTTACAATATC+AGG | - | chr5.1:15024525-15024544 | None:intergenic | 30.0% | |
| TAAGCTTTCAATGCCTTTAA+TGG | - | chr5.1:15027397-15027416 | None:intergenic | 30.0% | |
| TACAAAGGATTCATGACAAA+TGG | + | chr5.1:15027950-15027969 | MS.gene86540:CDS | 30.0% | |
| TACAACAAGAACAAAAATGG+TGG | + | chr5.1:15026474-15026493 | MS.gene86540:CDS | 30.0% | |
| TATGAAATCATCAATGTGGT+TGG | + | chr5.1:15025939-15025958 | MS.gene86540:CDS | 30.0% | |
| TATTAGTTGGAACTGTAGTT+TGG | + | chr5.1:15026626-15026645 | MS.gene86540:CDS | 30.0% | |
| TCAAACACACACTAATATCA+AGG | + | chr5.1:15027078-15027097 | MS.gene86540:intron | 30.0% | |
| TTGTTTGTGTTGTATTTGAC+AGG | + | chr5.1:15027121-15027140 | MS.gene86540:intron | 30.0% | |
| ! | ATATATTGAGTCTGGTTTAG+TGG | + | chr5.1:15026510-15026529 | MS.gene86540:CDS | 30.0% |
| ! | ATTTTATCCACACTATGTAG+GGG | + | chr5.1:15027248-15027267 | MS.gene86540:intron | 30.0% |
| ! | ATTTTCACACAGGAATTTGA+CGG | + | chr5.1:15026427-15026446 | MS.gene86540:intron | 30.0% |
| ! | ATTTTGCAAATGGTAGACAA+TGG | + | chr5.1:15027922-15027941 | MS.gene86540:CDS | 30.0% |
| ! | CATTTTATCCACACTATGTA+GGG | + | chr5.1:15027247-15027266 | MS.gene86540:intron | 30.0% |
| ! | CCATTTTCTTTCTCTTTGAT+CGG | - | chr5.1:15028236-15028255 | None:intergenic | 30.0% |
| ! | CTCAAACTAAAAAGCTTTTG+GGG | + | chr5.1:15028024-15028043 | MS.gene86540:CDS | 30.0% |
| ! | GACAAGTTCTGATAAAGAAT+GGG | - | chr5.1:15025152-15025171 | None:intergenic | 30.0% |
| ! | GACTCAAACTAAAAAGCTTT+TGG | + | chr5.1:15028022-15028041 | MS.gene86540:CDS | 30.0% |
| ! | TCATTTTATCCACACTATGT+AGG | + | chr5.1:15027246-15027265 | MS.gene86540:intron | 30.0% |
| ! | TGACAAGTTCTGATAAAGAA+TGG | - | chr5.1:15025153-15025172 | None:intergenic | 30.0% |
| ! | TTAAGAATTGGAGTACCAAT+AGG | + | chr5.1:15026146-15026165 | MS.gene86540:CDS | 30.0% |
| ! | TTTTGCAAATGGTAGACAAT+GGG | + | chr5.1:15027923-15027942 | MS.gene86540:CDS | 30.0% |
| !! | AAAAATTGCTTTAGAAGCTG+CGG | + | chr5.1:15024581-15024600 | MS.gene86540:CDS | 30.0% |
| !! | ACATTGATGATGATAATGGA+AGG | + | chr5.1:15025247-15025266 | MS.gene86540:CDS | 30.0% |
| !! | ATATTGGTATTGATGAGTCT+AGG | + | chr5.1:15027481-15027500 | MS.gene86540:CDS | 30.0% |
| !! | ATGCATTATTAGCATTGGTT+TGG | - | chr5.1:15026781-15026800 | None:intergenic | 30.0% |
| !! | GCATTGGTTTGGTTTAAAAA+AGG | - | chr5.1:15026770-15026789 | None:intergenic | 30.0% |
| !! | GCTCTCTTTTTCATATTAGT+TGG | + | chr5.1:15026613-15026632 | MS.gene86540:CDS | 30.0% |
| !! | GGAGTTTGGATGTTTTATTA+TGG | + | chr5.1:15026380-15026399 | MS.gene86540:intron | 30.0% |
| !!! | GTAACCATTTGTTTTTTAGG+TGG | - | chr5.1:15026688-15026707 | None:intergenic | 30.0% |
| AACTTATAAGGGACAGCATA+AGG | - | chr5.1:15026266-15026285 | None:intergenic | 35.0% | |
| AAGTTTATTCCATATGGGGA+TGG | + | chr5.1:15026281-15026300 | MS.gene86540:CDS | 35.0% | |
| AATAGCAGAAAGAAAAGCAG+TGG | - | chr5.1:15025502-15025521 | None:intergenic | 35.0% | |
| AATCTCTTATAGAGGTAGTG+AGG | + | chr5.1:15028260-15028279 | MS.gene86540:CDS | 35.0% | |
| AATTGAAGTGAAGAAAGGGT+AGG | - | chr5.1:15025129-15025148 | None:intergenic | 35.0% | |
| ACTTGTTCACTTCCACAATT+AGG | - | chr5.1:15028357-15028376 | None:intergenic | 35.0% | |
| AGACACAATGTGGCAATAAT+TGG | + | chr5.1:15025018-15025037 | MS.gene86540:CDS | 35.0% | |
| AGCTTTCAATGCCTTTAATG+GGG | - | chr5.1:15027395-15027414 | None:intergenic | 35.0% | |
| AGGACCACCTAAAAAACAAA+TGG | + | chr5.1:15026681-15026700 | MS.gene86540:CDS | 35.0% | |
| AGGGTGAATGATGAATTTAG+AGG | + | chr5.1:15026661-15026680 | MS.gene86540:CDS | 35.0% | |
| AGGTTCATCAACTCATGAAA+AGG | - | chr5.1:15024730-15024749 | None:intergenic | 35.0% | |
| ATAAAATTCCAGGATCATGC+TGG | - | chr5.1:15027764-15027783 | None:intergenic | 35.0% | |
| ATATCATCCATTGCATCAGA+TGG | - | chr5.1:15025546-15025565 | None:intergenic | 35.0% | |
| ATCTCTTATAGAGGTAGTGA+GGG | + | chr5.1:15028261-15028280 | MS.gene86540:CDS | 35.0% | |
| ATGGAGAGAATCTCTTATAG+AGG | + | chr5.1:15028252-15028271 | MS.gene86540:CDS | 35.0% | |
| ATGGGAATTGAAGTGAAGAA+AGG | - | chr5.1:15025134-15025153 | None:intergenic | 35.0% | |
| ATTCTACAACAAGCGGAAAT+TGG | - | chr5.1:15027059-15027078 | None:intergenic | 35.0% | |
| ATTGAAGTGAAGAAAGGGTA+GGG | - | chr5.1:15025128-15025147 | None:intergenic | 35.0% | |
| CAGGCATTCATAATACATCA+AGG | + | chr5.1:15024499-15024518 | MS.gene86540:CDS | 35.0% | |
| CCGATCAAAGAGAAAGAAAA+TGG | + | chr5.1:15028233-15028252 | MS.gene86540:CDS | 35.0% | |
| CTTAATAGCCTTCCATTGTT+CGG | - | chr5.1:15026131-15026150 | None:intergenic | 35.0% | |
| GAAAATACAGTGAGCACATT+TGG | + | chr5.1:15027270-15027289 | MS.gene86540:CDS | 35.0% | |
| GAAACAATTCATTCCAAACC+AGG | + | chr5.1:15026023-15026042 | MS.gene86540:CDS | 35.0% | |
| GACAAAAAACTAAGTCCAAG+AGG | - | chr5.1:15025672-15025691 | None:intergenic | 35.0% | |
| GATAACAAATGTGCTAGTTC+AGG | + | chr5.1:15025362-15025381 | MS.gene86540:CDS | 35.0% | |
| GCTCTAATGATTCTCTACAA+TGG | + | chr5.1:15024459-15024478 | MS.gene86540:CDS | 35.0% | |
| GGTTCATCAACTCATGAAAA+GGG | - | chr5.1:15024729-15024748 | None:intergenic | 35.0% | |
| GTAATTGGCAAAGAACCAAT+TGG | + | chr5.1:15027417-15027436 | MS.gene86540:CDS | 35.0% | |
| GTCTAATCACTCTGGATTAT+CGG | + | chr5.1:15025989-15026008 | MS.gene86540:CDS | 35.0% | |
| GTGTTTGATTCTACAACAAG+CGG | - | chr5.1:15027066-15027085 | None:intergenic | 35.0% | |
| TCAAAGTTATCTACACTACG+TGG | + | chr5.1:15025780-15025799 | MS.gene86540:CDS | 35.0% | |
| TCACAGCGATCTTTATCAAA+TGG | + | chr5.1:15025170-15025189 | MS.gene86540:CDS | 35.0% | |
| TGCATGCAATATTTATGTGG+AGG | + | chr5.1:15026796-15026815 | MS.gene86540:intron | 35.0% | |
| TGGGAATTGAAGTGAAGAAA+GGG | - | chr5.1:15025133-15025152 | None:intergenic | 35.0% | |
| TTCGCAACACTAAACACTTT+CGG | - | chr5.1:15025441-15025460 | None:intergenic | 35.0% | |
| TTGTAGGACTTCAGAGAATT+TGG | - | chr5.1:15027799-15027818 | None:intergenic | 35.0% | |
| TTTAGTGTTGCGAAGAATCT+TGG | + | chr5.1:15025447-15025466 | MS.gene86540:CDS | 35.0% | |
| TTTGCAAAATGGCAGTTGAT+AGG | - | chr5.1:15027912-15027931 | None:intergenic | 35.0% | |
| TTTGCAAATGGTAGACAATG+GGG | + | chr5.1:15027924-15027943 | MS.gene86540:CDS | 35.0% | |
| ! | AGTAGAGCTTGTTTAACACA+AGG | + | chr5.1:15027979-15027998 | MS.gene86540:CDS | 35.0% |
| ! | ATATACAGTTTTGCAGGTCA+TGG | + | chr5.1:15024993-15025012 | MS.gene86540:intron | 35.0% |
| ! | ATCTTTATTGGAGATGATGG+AGG | - | chr5.1:15028295-15028314 | None:intergenic | 35.0% |
| ! | ATTTTAGACTCTGGCATTGT+AGG | - | chr5.1:15027815-15027834 | None:intergenic | 35.0% |
| ! | GGCATTGAAAGCTTAGTAAT+TGG | + | chr5.1:15027402-15027421 | MS.gene86540:CDS | 35.0% |
| ! | GGTTTGGAATGAATTGTTTC+TGG | - | chr5.1:15026023-15026042 | None:intergenic | 35.0% |
| ! | GTTCTTAATTGTGCTGTTCA+GGG | + | chr5.1:15027856-15027875 | MS.gene86540:intron | 35.0% |
| ! | GTTGATAGGTCAATTGCTAA+TGG | - | chr5.1:15027898-15027917 | None:intergenic | 35.0% |
| ! | TGGAACTGTAGTTTGGATTT+TGG | + | chr5.1:15026633-15026652 | MS.gene86540:CDS | 35.0% |
| ! | TGTTCTTAATTGTGCTGTTC+AGG | + | chr5.1:15027855-15027874 | MS.gene86540:intron | 35.0% |
| ! | TTTCTTTTAAGCTCCGAATC+TGG | - | chr5.1:15025600-15025619 | None:intergenic | 35.0% |
| !! | CTCTTCTTTTTCATCTGCAA+AGG | - | chr5.1:15028202-15028221 | None:intergenic | 35.0% |
| !! | GATGATGATAATGGAAGGAA+CGG | + | chr5.1:15025252-15025271 | MS.gene86540:CDS | 35.0% |
| !! | TTGGAATGAATTGTTTCTGG+AGG | - | chr5.1:15026020-15026039 | None:intergenic | 35.0% |
| !!! | AGTTTGGATTTTGGAGCATA+GGG | + | chr5.1:15026642-15026661 | MS.gene86540:CDS | 35.0% |
| !!! | ATCAACTGCCATTTTGCAAA+TGG | + | chr5.1:15027912-15027931 | MS.gene86540:CDS | 35.0% |
| !!! | TAGTTTGGATTTTGGAGCAT+AGG | + | chr5.1:15026641-15026660 | MS.gene86540:CDS | 35.0% |
| AACAAATGTGCTAGTTCAGG+TGG | + | chr5.1:15025365-15025384 | MS.gene86540:CDS | 40.0% | |
| AAGAAAGCTGTTGAACTGTG+AGG | - | chr5.1:15027371-15027390 | None:intergenic | 40.0% | |
| ACTCAGCCATATATTGAGTC+TGG | + | chr5.1:15026502-15026521 | MS.gene86540:CDS | 40.0% | |
| ATATTGGTGAGCCATGGAAA+AGG | - | chr5.1:15026743-15026762 | None:intergenic | 40.0% | |
| ATCATCAATGTGGTTGGAAC+CGG | + | chr5.1:15025945-15025964 | MS.gene86540:CDS | 40.0% | |
| ATTGCTAATGGTGAGTCTCT+TGG | - | chr5.1:15027886-15027905 | None:intergenic | 40.0% | |
| CAAACCAGGCAATAACTTCA+GGG | + | chr5.1:15026037-15026056 | MS.gene86540:CDS | 40.0% | |
| GAACCAATTGGTTACACTCA+AGG | + | chr5.1:15027429-15027448 | MS.gene86540:CDS | 40.0% | |
| GAACCTTGAGTGTAACCAAT+TGG | - | chr5.1:15027435-15027454 | None:intergenic | 40.0% | |
| GAGCTGTTACAGAACTATGA+GGG | - | chr5.1:15025044-15025063 | None:intergenic | 40.0% | |
| GATGCAATGGATGATATCCA+AGG | + | chr5.1:15025549-15025568 | MS.gene86540:CDS | 40.0% | |
| GATGCATTGAACATCTTCGA+TGG | + | chr5.1:15025819-15025838 | MS.gene86540:CDS | 40.0% | |
| GCGAAGAATCTTGGAATGAT+GGG | + | chr5.1:15025456-15025475 | MS.gene86540:CDS | 40.0% | |
| GCTTTCAATGCCTTTAATGG+GGG | - | chr5.1:15027394-15027413 | None:intergenic | 40.0% | |
| TAGACAATGGGGACTTACAA+AGG | + | chr5.1:15027935-15027954 | MS.gene86540:CDS | 40.0% | |
| TATTGGTGAGCCATGGAAAA+GGG | - | chr5.1:15026742-15026761 | None:intergenic | 40.0% | |
| TCACACCAGTTGTTATCAGA+CGG | - | chr5.1:15026337-15026356 | None:intergenic | 40.0% | |
| TCCATCCATAGTAGTCAACA+AGG | - | chr5.1:15025209-15025228 | None:intergenic | 40.0% | |
| TCGCAACACTAAACACTTTC+GGG | - | chr5.1:15025440-15025459 | None:intergenic | 40.0% | |
| TGAGCTGTTACAGAACTATG+AGG | - | chr5.1:15025045-15025064 | None:intergenic | 40.0% | |
| TGATGGGAACTGGTTATGTA+TGG | + | chr5.1:15025472-15025491 | MS.gene86540:CDS | 40.0% | |
| TGCAAGGAAGATGTCGATAT+AGG | - | chr5.1:15027598-15027617 | None:intergenic | 40.0% | |
| TGCAATTCTGTGAGAGGAAA+AGG | + | chr5.1:15026820-15026839 | MS.gene86540:intron | 40.0% | |
| TGCGAAGAATCTTGGAATGA+TGG | + | chr5.1:15025455-15025474 | MS.gene86540:CDS | 40.0% | |
| TGGTGTAAATGGAGCCAAAA+AGG | - | chr5.1:15026575-15026594 | None:intergenic | 40.0% | |
| TTGTTCTTACCATCCCCATA+TGG | - | chr5.1:15026293-15026312 | None:intergenic | 40.0% | |
| ! | AAATGGCAAAACTTGACTCG+CGG | + | chr5.1:15025630-15025649 | MS.gene86540:CDS | 40.0% |
| ! | AACCACATCCTTGGTGTAAA+TGG | - | chr5.1:15026586-15026605 | None:intergenic | 40.0% |
| ! | AATCTTGGAATGATGGGAAC+TGG | + | chr5.1:15025462-15025481 | MS.gene86540:CDS | 40.0% |
| ! | ACCTTGTTGACTACTATGGA+TGG | + | chr5.1:15025205-15025224 | MS.gene86540:CDS | 40.0% |
| ! | GGTTATTGGTCTAATCACTC+TGG | + | chr5.1:15025981-15026000 | MS.gene86540:CDS | 40.0% |
| ! | GTATTTTCCCCTACATAGTG+TGG | - | chr5.1:15027258-15027277 | None:intergenic | 40.0% |
| ! | TATTATCTCCCCCTTTTCCA+TGG | + | chr5.1:15026729-15026748 | MS.gene86540:intron | 40.0% |
| ! | TTTTAGTACCAGCATGATCC+TGG | + | chr5.1:15027753-15027772 | MS.gene86540:intron | 40.0% |
| !! | AACTAGTGCTTTGGCCTTTT+TGG | + | chr5.1:15026558-15026577 | MS.gene86540:CDS | 40.0% |
| !! | ACTGGTTCTGTTCCTAATTG+TGG | + | chr5.1:15028342-15028361 | MS.gene86540:CDS | 40.0% |
| !! | AGGTTTTCTAAGCATTGCTG+AGG | + | chr5.1:15024683-15024702 | MS.gene86540:CDS | 40.0% |
| !! | GATAATGGAAGGAACGGAAT+TGG | + | chr5.1:15025258-15025277 | MS.gene86540:CDS | 40.0% |
| !! | GGTTTTCTAAGCATTGCTGA+GGG | + | chr5.1:15024684-15024703 | MS.gene86540:CDS | 40.0% |
| !! | GTCGTTGTGTGCTACTTATA+TGG | + | chr5.1:15027292-15027311 | MS.gene86540:CDS | 40.0% |
| !! | TAAATTTACACCGGCTTGCA+AGG | - | chr5.1:15027614-15027633 | None:intergenic | 40.0% |
| !! | TTGGTCTTGCCGAGAATATT+TGG | - | chr5.1:15024627-15024646 | None:intergenic | 40.0% |
| !!! | TTTTGGCTCCATTTACACCA+AGG | + | chr5.1:15026575-15026594 | MS.gene86540:CDS | 40.0% |
| AAGGGACAGCATAAGGCAAT+AGG | - | chr5.1:15026259-15026278 | None:intergenic | 45.0% | |
| AAGTCCAAGAGGGCCATTAT+CGG | - | chr5.1:15025661-15025680 | None:intergenic | 45.0% | |
| ACTCGCGGAAATACCGATAA+TGG | + | chr5.1:15025645-15025664 | MS.gene86540:CDS | 45.0% | |
| AGGAACGGAATTGGTGCATT+AGG | + | chr5.1:15025267-15025286 | MS.gene86540:CDS | 45.0% | |
| AGTAGTTCACGCCAACACTA+TGG | + | chr5.1:15025410-15025429 | MS.gene86540:CDS | 45.0% | |
| AGTGGTAGTAGCACCTGTTA+GGG | + | chr5.1:15026528-15026547 | MS.gene86540:CDS | 45.0% | |
| ATGGAGGAAACACATTGCGT+AGG | + | chr5.1:15025838-15025857 | MS.gene86540:CDS | 45.0% | |
| ATTGGTGAGCCATGGAAAAG+GGG | - | chr5.1:15026741-15026760 | None:intergenic | 45.0% | |
| CAATGGCTTCTCTTCAACTG+TGG | + | chr5.1:15024476-15024495 | MS.gene86540:CDS | 45.0% | |
| CAATTTGTCTCGCAAGTACC+AGG | + | chr5.1:15026182-15026201 | MS.gene86540:CDS | 45.0% | |
| CAGCTTTCTTCCCCCATTAA+AGG | + | chr5.1:15027381-15027400 | MS.gene86540:CDS | 45.0% | |
| CCAAACCAGGCAATAACTTC+AGG | + | chr5.1:15026036-15026055 | MS.gene86540:CDS | 45.0% | |
| CCAGGCACAGATACATTTCA+AGG | + | chr5.1:15026200-15026219 | MS.gene86540:CDS | 45.0% | |
| CCTGAAGTTATTGCCTGGTT+TGG | - | chr5.1:15026039-15026058 | None:intergenic | 45.0% | |
| CCTTGAAATGTATCTGTGCC+TGG | - | chr5.1:15026203-15026222 | None:intergenic | 45.0% | |
| CTAGTTTCTGTCTCCCTAAC+AGG | - | chr5.1:15026544-15026563 | None:intergenic | 45.0% | |
| CTCCATTTACACCAAGGATG+TGG | + | chr5.1:15026581-15026600 | MS.gene86540:CDS | 45.0% | |
| CTGAAGAGAGAGCTTCAACT+TGG | - | chr5.1:15024646-15024665 | None:intergenic | 45.0% | |
| CTGGTACTTGCGAGACAAAT+TGG | - | chr5.1:15026184-15026203 | None:intergenic | 45.0% | |
| CTTGAGAAGGGTCCTCAAAA+TGG | + | chr5.1:15027543-15027562 | MS.gene86540:CDS | 45.0% | |
| CTTGTCCGTCTGATAACAAC+TGG | + | chr5.1:15026329-15026348 | MS.gene86540:CDS | 45.0% | |
| GAGAATCAAGTTCCTCTGAG+CGG | - | chr5.1:15028131-15028150 | None:intergenic | 45.0% | |
| GATCTGTGGATCAGCATGTT+TGG | + | chr5.1:15028056-15028075 | MS.gene86540:CDS | 45.0% | |
| GCATTGAACATCTTCGATGG+AGG | + | chr5.1:15025822-15025841 | MS.gene86540:CDS | 45.0% | |
| GGAGACAGAAACTAGTGCTT+TGG | + | chr5.1:15026549-15026568 | MS.gene86540:CDS | 45.0% | |
| GGTCAAGAGTTCACCAGAAA+CGG | + | chr5.1:15027642-15027661 | MS.gene86540:CDS | 45.0% | |
| GGTTCAATATTGGTGAGCCA+TGG | - | chr5.1:15026749-15026768 | None:intergenic | 45.0% | |
| GTACTTGCGAGACAAATTGG+CGG | - | chr5.1:15026181-15026200 | None:intergenic | 45.0% | |
| GTAGTTCACGCCAACACTAT+GGG | + | chr5.1:15025411-15025430 | MS.gene86540:CDS | 45.0% | |
| GTTAACATGACAGGTGTGAC+AGG | + | chr5.1:15025873-15025892 | MS.gene86540:CDS | 45.0% | |
| TAGTGGTAGTAGCACCTGTT+AGG | + | chr5.1:15026527-15026546 | MS.gene86540:CDS | 45.0% | |
| TAGTTCACGCCAACACTATG+GGG | + | chr5.1:15025412-15025431 | MS.gene86540:CDS | 45.0% | |
| TATCTCCTCTGCAGTTGCTT+CGG | - | chr5.1:15025346-15025365 | None:intergenic | 45.0% | |
| TCATCAATGTGGTTGGAACC+GGG | + | chr5.1:15025946-15025965 | MS.gene86540:CDS | 45.0% | |
| TCCATTGCATCAGATGGCAA+TGG | - | chr5.1:15025540-15025559 | None:intergenic | 45.0% | |
| TCCATTGCCATCTGATGCAA+TGG | + | chr5.1:15025536-15025555 | MS.gene86540:CDS | 45.0% | |
| TCTTATAGAGGTAGTGAGGG+AGG | + | chr5.1:15028264-15028283 | MS.gene86540:CDS | 45.0% | |
| TGAGATTCTGCAACGCTTCT+CGG | - | chr5.1:15025304-15025323 | None:intergenic | 45.0% | |
| TGCGGTCGACGATGTAAATT+CGG | + | chr5.1:15024599-15024618 | MS.gene86540:CDS | 45.0% | |
| TGTTATCAGACGGACAAGCT+CGG | - | chr5.1:15026327-15026346 | None:intergenic | 45.0% | |
| ! | AATACCGATAATGGCCCTCT+TGG | + | chr5.1:15025654-15025673 | MS.gene86540:CDS | 45.0% |
| ! | CAAGTTGAAGCTCTCTCTTC+AGG | + | chr5.1:15024644-15024663 | MS.gene86540:CDS | 45.0% |
| ! | CTATTACCTGTGATTTGGCC+TGG | + | chr5.1:15026071-15026090 | MS.gene86540:CDS | 45.0% |
| ! | GCAGACCTTGTTGACTACTA+TGG | + | chr5.1:15025201-15025220 | MS.gene86540:CDS | 45.0% |
| ! | GGGTTTTTCCGAACAATGGA+AGG | + | chr5.1:15026120-15026139 | MS.gene86540:CDS | 45.0% |
| ! | GGTTGGGTTTTTCCGAACAA+TGG | + | chr5.1:15026116-15026135 | MS.gene86540:CDS | 45.0% |
| !!! | AAAAAAATAAAATTTTTACA+AGG | - | chr5.1:15024750-15024769 | None:intergenic | 5.0% |
| !!! | TTGTAAAAATTTTATTTTTT+TGG | + | chr5.1:15024749-15024768 | MS.gene86540:intron | 5.0% |
| AAACCCTAGCTCAGGATCGT+CGG | + | chr5.1:15028158-15028177 | MS.gene86540:CDS | 50.0% | |
| AAGAGTTCACCAGAAACGGC+TGG | + | chr5.1:15027646-15027665 | MS.gene86540:CDS | 50.0% | |
| AGAGTTCACCAGAAACGGCT+GGG | + | chr5.1:15027647-15027666 | MS.gene86540:CDS | 50.0% | |
| AGTGCTCTAGCAGCTTCTTC+AGG | - | chr5.1:15027525-15027544 | None:intergenic | 50.0% | |
| AGTTCACGCCAACACTATGG+GGG | + | chr5.1:15025413-15025432 | MS.gene86540:CDS | 50.0% | |
| ATCTCCTCTGCAGTTGCTTC+GGG | - | chr5.1:15025345-15025364 | None:intergenic | 50.0% | |
| CAGGAATTTGACGGTGCAGT+AGG | + | chr5.1:15026436-15026455 | MS.gene86540:intron | 50.0% | |
| CTCTCCCTGAAGTTATTGCC+TGG | - | chr5.1:15026044-15026063 | None:intergenic | 50.0% | |
| GAACCAGTTATGCGTGGAGA+TGG | - | chr5.1:15028330-15028349 | None:intergenic | 50.0% | |
| GAGAAGGGTCCTCAAAATGG+CGG | + | chr5.1:15027546-15027565 | MS.gene86540:CDS | 50.0% | |
| GCTGTGACAAACCACATCCT+TGG | - | chr5.1:15026595-15026614 | None:intergenic | 50.0% | |
| GGAACAGAACCAGTTATGCG+TGG | - | chr5.1:15028336-15028355 | None:intergenic | 50.0% | |
| GGTCATGGCTAGACACAATG+TGG | + | chr5.1:15025008-15025027 | MS.gene86540:CDS | 50.0% | |
| GTGTTTCCAGGCCAAATCAC+AGG | - | chr5.1:15026080-15026099 | None:intergenic | 50.0% | |
| TACAAATCCCCAGCCGTTTC+TGG | - | chr5.1:15027658-15027677 | None:intergenic | 50.0% | |
| TCGACATCTTCCTTGCAAGC+CGG | + | chr5.1:15027601-15027620 | MS.gene86540:CDS | 50.0% | |
| TGGCGGTAACTAACGCCTAT+TGG | - | chr5.1:15026164-15026183 | None:intergenic | 50.0% | |
| TGGGGACTGTATGTGATCTG+TGG | + | chr5.1:15028042-15028061 | MS.gene86540:CDS | 50.0% | |
| TTGGTGAGCCATGGAAAAGG+GGG | - | chr5.1:15026740-15026759 | None:intergenic | 50.0% | |
| ! | ACGATCCTGAGCTAGGGTTT+TGG | - | chr5.1:15028158-15028177 | None:intergenic | 50.0% |
| ! | AGCTGCTAGAGCACTTGAGA+AGG | + | chr5.1:15027530-15027549 | MS.gene86540:CDS | 50.0% |
| ! | GCTGCTAGAGCACTTGAGAA+GGG | + | chr5.1:15027531-15027550 | MS.gene86540:CDS | 50.0% |
| ! | GTATATCAAGCACCGCTCAG+AGG | + | chr5.1:15028116-15028135 | MS.gene86540:CDS | 50.0% |
| AAACCCGACGATCCTGAGCT+AGG | - | chr5.1:15028165-15028184 | None:intergenic | 55.0% | |
| AACACAGCTCAGAAGCCTCG+CGG | + | chr5.1:15026095-15026114 | MS.gene86540:CDS | 55.0% | |
| AACCCGACGATCCTGAGCTA+GGG | - | chr5.1:15028164-15028183 | None:intergenic | 55.0% | |
| AACCCTAGCTCAGGATCGTC+GGG | + | chr5.1:15028159-15028178 | MS.gene86540:CDS | 55.0% | |
| ACGCGTGCACACACCAGATT+CGG | + | chr5.1:15025584-15025603 | MS.gene86540:CDS | 55.0% | |
| ATAACCGATCCTCCGAGACC+CGG | - | chr5.1:15025967-15025986 | None:intergenic | 55.0% | |
| ATGTGGTTGGAACCGGGTCT+CGG | + | chr5.1:15025952-15025971 | MS.gene86540:CDS | 55.0% | |
| CAGCCATCTCCACGCATAAC+TGG | + | chr5.1:15028324-15028343 | MS.gene86540:CDS | 55.0% | |
| CCTGACCAAAACCCTAGCTC+AGG | + | chr5.1:15028150-15028169 | MS.gene86540:CDS | 55.0% | |
| GAGTTCACCAGAAACGGCTG+GGG | + | chr5.1:15027648-15027667 | MS.gene86540:CDS | 55.0% | |
| GGAGGCTGCAATTCTGTGAG+AGG | + | chr5.1:15026814-15026833 | MS.gene86540:intron | 55.0% | |
| GGCTTCTCTTCAACTGTGGC+AGG | + | chr5.1:15024480-15024499 | MS.gene86540:CDS | 55.0% | |
| GGCTTCTGAGCTGTGTTTCC+AGG | - | chr5.1:15026092-15026111 | None:intergenic | 55.0% | |
| GGTCTCGGAGGATCGGTTAT+TGG | + | chr5.1:15025967-15025986 | MS.gene86540:CDS | 55.0% | |
| GTTCACGCCAACACTATGGG+GGG | + | chr5.1:15025414-15025433 | MS.gene86540:CDS | 55.0% | |
| TTCGGAAAAACCCAACCGCG+AGG | - | chr5.1:15026113-15026132 | None:intergenic | 55.0% | |
| !! | CCTGAGCTAGGGTTTTGGTC+AGG | - | chr5.1:15028153-15028172 | None:intergenic | 55.0% |
| !! | CGGACAAGCTCGGTGTTACT+AGG | - | chr5.1:15026317-15026336 | None:intergenic | 55.0% |
| AGCTCAGAAGCCTCGCGGTT+GGG | + | chr5.1:15026100-15026119 | MS.gene86540:CDS | 60.0% | |
| CGCGTGCTGTCAACACTCCT+TGG | - | chr5.1:15025569-15025588 | None:intergenic | 60.0% | |
| GAGACCCGAAGCAACTGCAG+AGG | + | chr5.1:15025338-15025357 | MS.gene86540:CDS | 60.0% | |
| GCAGTTGCTTCGGGTCTCAC+AGG | - | chr5.1:15025336-15025355 | None:intergenic | 60.0% | |
| TTTCGGGCCCCCCATAGTGT+TGG | - | chr5.1:15025424-15025443 | None:intergenic | 60.0% | |
| !! | GCAGCAACGCCGCCATTTTG+AGG | - | chr5.1:15027558-15027577 | None:intergenic | 60.0% |
| CAGCTCAGAAGCCTCGCGGT+TGG | + | chr5.1:15026099-15026118 | MS.gene86540:CDS | 65.0% | |
| GGAACCGGGTCTCGGAGGAT+CGG | + | chr5.1:15025960-15025979 | MS.gene86540:CDS | 65.0% | |
| TGGTTGGAACCGGGTCTCGG+AGG | + | chr5.1:15025955-15025974 | MS.gene86540:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 15024438 | 15028386 | 15024438 | ID=MS.gene86540 |
| chr5.1 | mRNA | 15024438 | 15028386 | 15024438 | ID=MS.gene86540.t1;Parent=MS.gene86540 |
| chr5.1 | exon | 15024438 | 15024705 | 15024438 | ID=MS.gene86540.t1.exon1;Parent=MS.gene86540.t1 |
| chr5.1 | CDS | 15024438 | 15024705 | 15024438 | ID=cds.MS.gene86540.t1;Parent=MS.gene86540.t1 |
| chr5.1 | exon | 15025001 | 15026352 | 15025001 | ID=MS.gene86540.t1.exon2;Parent=MS.gene86540.t1 |
| chr5.1 | CDS | 15025001 | 15026352 | 15025001 | ID=cds.MS.gene86540.t1;Parent=MS.gene86540.t1 |
| chr5.1 | exon | 15026439 | 15026716 | 15026439 | ID=MS.gene86540.t1.exon3;Parent=MS.gene86540.t1 |
| chr5.1 | CDS | 15026439 | 15026716 | 15026439 | ID=cds.MS.gene86540.t1;Parent=MS.gene86540.t1 |
| chr5.1 | exon | 15027143 | 15027174 | 15027143 | ID=MS.gene86540.t1.exon4;Parent=MS.gene86540.t1 |
| chr5.1 | CDS | 15027143 | 15027174 | 15027143 | ID=cds.MS.gene86540.t1;Parent=MS.gene86540.t1 |
| chr5.1 | exon | 15027268 | 15027674 | 15027268 | ID=MS.gene86540.t1.exon5;Parent=MS.gene86540.t1 |
| chr5.1 | CDS | 15027268 | 15027674 | 15027268 | ID=cds.MS.gene86540.t1;Parent=MS.gene86540.t1 |
| chr5.1 | exon | 15027877 | 15028386 | 15027877 | ID=MS.gene86540.t1.exon6;Parent=MS.gene86540.t1 |
| chr5.1 | CDS | 15027877 | 15028386 | 15027877 | ID=cds.MS.gene86540.t1;Parent=MS.gene86540.t1 |
| Gene Sequence |
| Protein sequence |