Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86947.t1 | XP_024633021.1 | 98.2 | 487 | 9 | 0 | 1 | 487 | 1 | 487 | 4.70E-225 | 790.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86947.t1 | Q9M8L9 | 68.1 | 489 | 147 | 3 | 6 | 487 | 2 | 488 | 9.4e-158 | 558.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86947.t1 | G7IIA0 | 98.2 | 487 | 9 | 0 | 1 | 487 | 1 | 487 | 3.4e-225 | 790.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060563 | MS.gene86947 | 0.806813 | 6.85E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene75991 | MS.gene86947 | PPI |
| MS.gene022024 | MS.gene86947 | PPI |
| MS.gene86947 | MS.gene37173 | PPI |
| MS.gene018234 | MS.gene86947 | PPI |
| MS.gene37165 | MS.gene86947 | PPI |
| MS.gene86947 | MS.gene018243 | PPI |
| MS.gene018235 | MS.gene86947 | PPI |
| MS.gene44762 | MS.gene86947 | PPI |
| MS.gene86947 | MS.gene37166 | PPI |
| MS.gene62008 | MS.gene86947 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86947.t1 | MTR_2g104180 | 98.357 | 487 | 8 | 0 | 1 | 487 | 1 | 487 | 0.0 | 966 |
| MS.gene86947.t1 | MTR_7g017630 | 45.433 | 416 | 218 | 4 | 73 | 483 | 47 | 458 | 6.25e-118 | 354 |
| MS.gene86947.t1 | MTR_6g016245 | 44.762 | 420 | 224 | 4 | 73 | 487 | 38 | 454 | 1.41e-112 | 340 |
| MS.gene86947.t1 | MTR_6g016295 | 43.961 | 414 | 224 | 4 | 79 | 487 | 46 | 456 | 8.75e-107 | 325 |
| MS.gene86947.t1 | MTR_6g016275 | 44.313 | 422 | 224 | 6 | 73 | 487 | 43 | 460 | 1.11e-106 | 325 |
| MS.gene86947.t1 | MTR_5g083770 | 40.749 | 427 | 245 | 5 | 62 | 483 | 5 | 428 | 6.88e-106 | 322 |
| MS.gene86947.t1 | MTR_3g072110 | 39.070 | 430 | 253 | 5 | 64 | 487 | 12 | 438 | 6.84e-103 | 315 |
| MS.gene86947.t1 | MTR_6g016270 | 43.095 | 420 | 231 | 4 | 73 | 487 | 45 | 461 | 1.02e-102 | 315 |
| MS.gene86947.t1 | MTR_5g083760 | 38.679 | 424 | 247 | 7 | 69 | 485 | 28 | 445 | 1.95e-95 | 296 |
| MS.gene86947.t1 | MTR_1396s0010 | 41.509 | 265 | 131 | 3 | 222 | 486 | 1 | 241 | 2.21e-59 | 196 |
| MS.gene86947.t1 | MTR_1396s0010 | 45.320 | 203 | 109 | 1 | 202 | 404 | 1 | 201 | 1.29e-51 | 174 |
| MS.gene86947.t1 | MTR_6g016245 | 45.000 | 200 | 106 | 3 | 289 | 487 | 190 | 386 | 1.08e-42 | 156 |
| MS.gene86947.t1 | MTR_6g016245 | 46.053 | 152 | 78 | 1 | 73 | 220 | 38 | 189 | 5.80e-36 | 137 |
| MS.gene86947.t1 | MTR_8g065630 | 40.212 | 189 | 109 | 1 | 47 | 231 | 23 | 211 | 5.91e-38 | 138 |
| MS.gene86947.t1 | MTR_6g024240 | 35.424 | 271 | 116 | 5 | 219 | 487 | 39 | 252 | 1.06e-36 | 136 |
| MS.gene86947.t1 | MTR_8g065650 | 49.020 | 153 | 74 | 1 | 79 | 227 | 55 | 207 | 2.02e-36 | 142 |
| MS.gene86947.t1 | MTR_0658s0030 | 43.636 | 110 | 61 | 1 | 367 | 476 | 1 | 109 | 4.80e-21 | 89.0 |
| MS.gene86947.t1 | MTR_3g072105 | 40.217 | 92 | 54 | 1 | 71 | 162 | 19 | 109 | 6.37e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86947.t1 | AT1G80510 | 71.779 | 489 | 129 | 3 | 6 | 487 | 2 | 488 | 0.0 | 677 |
| MS.gene86947.t1 | AT3G30390 | 45.107 | 419 | 223 | 3 | 73 | 487 | 41 | 456 | 5.34e-123 | 367 |
| MS.gene86947.t1 | AT3G30390 | 45.107 | 419 | 223 | 3 | 73 | 487 | 41 | 456 | 5.34e-123 | 367 |
| MS.gene86947.t1 | AT3G30390 | 45.107 | 419 | 223 | 3 | 73 | 487 | 41 | 456 | 5.34e-123 | 367 |
| MS.gene86947.t1 | AT5G38820 | 45.238 | 420 | 221 | 4 | 73 | 486 | 33 | 449 | 5.06e-121 | 362 |
| MS.gene86947.t1 | AT5G38820 | 45.238 | 420 | 221 | 4 | 73 | 486 | 33 | 449 | 5.06e-121 | 362 |
| MS.gene86947.t1 | AT5G38820 | 45.238 | 420 | 221 | 4 | 73 | 486 | 38 | 454 | 5.68e-121 | 362 |
| MS.gene86947.t1 | AT3G56200 | 39.618 | 419 | 246 | 3 | 72 | 486 | 20 | 435 | 4.30e-100 | 308 |
| MS.gene86947.t1 | AT2G40420 | 38.186 | 419 | 250 | 5 | 72 | 485 | 22 | 436 | 5.93e-89 | 279 |
Find 104 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGTTCGGTTCATCATTT+AGG | 0.170468 | 2.3:-722868 | MS.gene86947:CDS |
| AATTGTTTATTTGATTATAA+TGG | 0.179616 | 2.3:-722902 | MS.gene86947:CDS |
| ATTTGACTACTACTATTATT+GGG | 0.217290 | 2.3:-723152 | MS.gene86947:CDS |
| AATTTGACTACTACTATTAT+TGG | 0.222548 | 2.3:-723153 | MS.gene86947:CDS |
| AGTTGATGGGGAATGGGGTT+TGG | 0.254515 | 2.3:-722834 | MS.gene86947:CDS |
| TATTATTGGGGCAGGAATTA+TGG | 0.256792 | 2.3:-723139 | MS.gene86947:CDS |
| CCGGTTCGGTTCATCATTTA+GGG | 0.262632 | 2.3:-722867 | MS.gene86947:CDS |
| ATTGTTTATTTGATTATAAT+GGG | 0.268720 | 2.3:-722901 | MS.gene86947:CDS |
| CCTGCTACCATGAAAGTTCT+TGG | 0.277184 | 2.3:-723111 | MS.gene86947:CDS |
| CTCTTCCTACTTTCTGATAA+AGG | 0.295674 | 2.3:+722229 | None:intergenic |
| GCTTGTGATTCTTGTTGTTA+TGG | 0.306594 | 2.3:-722800 | MS.gene86947:CDS |
| GTTGATGGGGAATGGGGTTT+GGG | 0.307539 | 2.3:-722833 | MS.gene86947:CDS |
| GATAATTATCCTCTTGTTGT+TGG | 0.311646 | 2.3:-723219 | MS.gene86947:CDS |
| CTGTCCGGTTACCTATTATT+CGG | 0.316049 | 2.3:-722430 | MS.gene86947:CDS |
| TTGATCAGTTGATGGGGAAT+GGG | 0.317412 | 2.3:-722840 | MS.gene86947:CDS |
| TTAAAAGCTGTCCAGATGTT+TGG | 0.318283 | 2.3:+722148 | None:intergenic |
| CGTAGTGAGAAATGAATAAC+AGG | 0.324473 | 2.3:+722289 | None:intergenic |
| TGTCCGGTTACCTATTATTC+GGG | 0.327444 | 2.3:-722429 | MS.gene86947:CDS |
| CAGTATCATCCCCGAATAAT+AGG | 0.328662 | 2.3:+722419 | None:intergenic |
| ACATATGCATTTGTCATGAT+TGG | 0.339398 | 2.3:+722571 | None:intergenic |
| TTTGATCAGTTGATGGGGAA+TGG | 0.352760 | 2.3:-722841 | MS.gene86947:CDS |
| GCTGTGACTGTTAGCATTGT+AGG | 0.358697 | 2.3:-721998 | MS.gene86947:CDS |
| TGCAATAAGATTAAGTCATC+AGG | 0.366366 | 2.3:-722071 | MS.gene86947:CDS |
| CTGTTGGTTCTCATATATAT+CGG | 0.366555 | 2.3:-722184 | MS.gene86947:CDS |
| GTCATGGTTAATGTTGGTAT+TGG | 0.367428 | 2.3:-722020 | MS.gene86947:CDS |
| GGTACACCAGACCCGTGATT+TGG | 0.370920 | 2.3:+723189 | None:intergenic |
| AACAACACCAAGAACTTTCA+TGG | 0.378312 | 2.3:+723104 | None:intergenic |
| ATGTGTAAAGCGTCATCTTA+TGG | 0.399986 | 2.3:-723006 | MS.gene86947:CDS |
| CCGATATACAACGAGCTTGA+AGG | 0.427017 | 2.3:-722529 | MS.gene86947:CDS |
| TCTTGGAATCCGGTTTAGTT+CGG | 0.429060 | 2.3:-722365 | MS.gene86947:CDS |
| GTGGATACTTTGGTATTTGA+GGG | 0.430206 | 2.3:-722259 | MS.gene86947:CDS |
| TGTCCAGATGTTTGGAATCA+TGG | 0.438941 | 2.3:+722156 | None:intergenic |
| AGTGGATACTTTGGTATTTG+AGG | 0.440264 | 2.3:-722260 | MS.gene86947:CDS |
| TGATCAGTTGATGGGGAATG+GGG | 0.440283 | 2.3:-722839 | MS.gene86947:CDS |
| CCTTCAAGCTCGTTGTATAT+CGG | 0.440630 | 2.3:+722529 | None:intergenic |
| AAATATGATGAAGAACTAAC+AGG | 0.441010 | 2.3:+723363 | None:intergenic |
| GGAATGGGGTTTGGGATCAG+AGG | 0.442360 | 2.3:-722825 | MS.gene86947:CDS |
| AGTTCAAGGCCGAACTAAAC+CGG | 0.446759 | 2.3:+722356 | None:intergenic |
| GTACCATGATTCCAAACATC+TGG | 0.451690 | 2.3:-722159 | MS.gene86947:CDS |
| CCAGACCCGTGATTTGGAAT+AGG | 0.454182 | 2.3:+723195 | None:intergenic |
| GCAACAACGGCTGTTTCGTT+AGG | 0.456316 | 2.3:-722115 | MS.gene86947:CDS |
| CTAAAATCAGGAACCATCCT+AGG | 0.459986 | 2.3:+722631 | None:intergenic |
| CAGGGAAAACAAGTATCAAA+TGG | 0.460714 | 2.3:+722308 | None:intergenic |
| GTTAGCATTGTAGGAGTTGT+CGG | 0.463076 | 2.3:-721989 | MS.gene86947:CDS |
| TTGATAAGGATCTTGGAATC+CGG | 0.468353 | 2.3:-722375 | MS.gene86947:CDS |
| ATGCTATGGGTAGGCCTGCT+AGG | 0.468880 | 2.3:-722969 | MS.gene86947:CDS |
| CCCTAAATGATGAACCGAAC+CGG | 0.471664 | 2.3:+722867 | None:intergenic |
| GGAAATTAGTGTCGAATTGT+TGG | 0.479421 | 2.3:-723043 | MS.gene86947:CDS |
| ATACCAAAGTATCCACTGTT+TGG | 0.479637 | 2.3:+722266 | None:intergenic |
| GAGCTTGACTTCAGCTGCAT+CGG | 0.488598 | 2.3:-722731 | MS.gene86947:CDS |
| TATGCTGCAACGGCACTGTC+CGG | 0.495004 | 2.3:-722445 | MS.gene86947:CDS |
| ATCCCCGAATAATAGGTAAC+CGG | 0.498976 | 2.3:+722426 | None:intergenic |
| GAAAGTAGGAAGAGATCGCT+AGG | 0.504058 | 2.3:-722220 | MS.gene86947:CDS |
| TGTTTATTTGATTATAATGG+GGG | 0.506452 | 2.3:-722899 | MS.gene86947:CDS |
| GTTGGTCCTATTCCAAATCA+CGG | 0.506802 | 2.3:-723201 | MS.gene86947:CDS |
| CCTATTCCAAATCACGGGTC+TGG | 0.511638 | 2.3:-723195 | MS.gene86947:CDS |
| GACTCGAACGATATAGTTCA+AGG | 0.512418 | 2.3:+722342 | None:intergenic |
| GAGATTTGAGCCGCGTAGAA+CGG | 0.523045 | 2.3:-722048 | MS.gene86947:CDS |
| CCAAGAACTTTCATGGTAGC+AGG | 0.523622 | 2.3:+723111 | None:intergenic |
| AGGGCTGACTGCAATTCTGT+TGG | 0.526397 | 2.3:-722200 | MS.gene86947:CDS |
| CTTGACTTCAGCTGCATCGG+TGG | 0.528392 | 2.3:-722728 | MS.gene86947:CDS |
| ACGCCAAACAGTGGATACTT+TGG | 0.531176 | 2.3:-722269 | MS.gene86947:CDS |
| ATCTCAGATAAAATCCTAGC+AGG | 0.533652 | 2.3:+722955 | None:intergenic |
| AATCACGGGTCTGGTGTACC+TGG | 0.537363 | 2.3:-723186 | MS.gene86947:CDS |
| TTGTTTATTTGATTATAATG+GGG | 0.537532 | 2.3:-722900 | MS.gene86947:CDS |
| ATCTAAGGTTGATGATGATG+AGG | 0.540722 | 2.3:-723265 | MS.gene86947:CDS |
| AATCTTATTGCAACAAGAGG+TGG | 0.543383 | 2.3:+722082 | None:intergenic |
| ACTACTACTATTATTGGGGC+AGG | 0.544363 | 2.3:-723147 | MS.gene86947:CDS |
| TGAGGTTGTTCAACATGCTA+TGG | 0.553920 | 2.3:-722983 | MS.gene86947:CDS |
| AGATGACGCTTTACACATAA+CGG | 0.555189 | 2.3:+723011 | None:intergenic |
| TTGGTCCTATTCCAAATCAC+GGG | 0.557232 | 2.3:-723200 | MS.gene86947:CDS |
| TGTGATTCTTGTTGTTATGG+TGG | 0.559947 | 2.3:-722797 | MS.gene86947:CDS |
| TTGTAGTGACCCTTCCTACT+CGG | 0.560230 | 2.3:+722485 | None:intergenic |
| AAGGAAAGATTGATGCTCCT+AGG | 0.564135 | 2.3:-722648 | MS.gene86947:CDS |
| CACCTCCTTTATCAGAAAGT+AGG | 0.564200 | 2.3:-722234 | MS.gene86947:CDS |
| CATCATGGTTTATGCTGCAA+CGG | 0.568976 | 2.3:-722455 | MS.gene86947:CDS |
| AGAAGATGAACCGAGTAGGA+AGG | 0.574177 | 2.3:-722495 | MS.gene86947:CDS |
| CAAATAAACAATTAAAACAC+CGG | 0.582905 | 2.3:+722912 | None:intergenic |
| TTTGACTACTACTATTATTG+GGG | 0.583048 | 2.3:-723151 | MS.gene86947:CDS |
| CTTAATCTTATTGCAACAAG+AGG | 0.584381 | 2.3:+722079 | None:intergenic |
| AAAGATTGATGCTCCTAGGA+TGG | 0.587388 | 2.3:-722644 | MS.gene86947:CDS |
| GAGGTTGTTCAACATGCTAT+GGG | 0.595730 | 2.3:-722982 | MS.gene86947:CDS |
| GAAGATGAACCGAGTAGGAA+GGG | 0.598449 | 2.3:-722494 | MS.gene86947:CDS |
| GCAATAAGATTAAGTCATCA+GGG | 0.602082 | 2.3:-722070 | MS.gene86947:CDS |
| GGAATAGGACCAACAACAAG+AGG | 0.604623 | 2.3:+723210 | None:intergenic |
| TGTCGGCAATGTCTATAGCA+TGG | 0.606367 | 2.3:-721972 | MS.gene86947:CDS |
| TTGTTCAACATGCTATGGGT+AGG | 0.614131 | 2.3:-722978 | MS.gene86947:CDS |
| TAAGGTTGATGATGATGAGG+AGG | 0.622414 | 2.3:-723262 | MS.gene86947:CDS |
| GTCAAATTAAACACAGCACC+AGG | 0.622692 | 2.3:+723168 | None:intergenic |
| TTTCTCACTACGCCAAACAG+TGG | 0.625897 | 2.3:-722278 | MS.gene86947:CDS |
| CCTACTCGGTTCATCTTCTG+CGG | 0.628118 | 2.3:+722499 | None:intergenic |
| TAAGTTCACAGGTGCAACAA+CGG | 0.628689 | 2.3:-722128 | MS.gene86947:CDS |
| TTCCTACTTTCTGATAAAGG+AGG | 0.633147 | 2.3:+722232 | None:intergenic |
| TTAGTGTCGAATTGTTGGTG+AGG | 0.634170 | 2.3:-723038 | MS.gene86947:CDS |
| AAAGTAGGAAGAGATCGCTA+GGG | 0.636934 | 2.3:-722219 | MS.gene86947:CDS |
| GTCCGGTTACCTATTATTCG+GGG | 0.637678 | 2.3:-722428 | MS.gene86947:CDS |
| CGGTTCGGTTCATCATTTAG+GGG | 0.639831 | 2.3:-722866 | MS.gene86947:CDS |
| CCGCAGAAGATGAACCGAGT+AGG | 0.645116 | 2.3:-722499 | MS.gene86947:CDS |
| ATCTTATCAAGCGAACAAAG+TGG | 0.658267 | 2.3:+722763 | None:intergenic |
| TATACAACGAGCTTGAAGGT+AGG | 0.669040 | 2.3:-722525 | MS.gene86947:CDS |
| TTGAACTATATCGTTCGAGT+CGG | 0.681194 | 2.3:-722340 | MS.gene86947:CDS |
| TAAAGCGTCATCTTATGGTG+AGG | 0.735180 | 2.3:-723001 | MS.gene86947:CDS |
| ATGACAAAATCCGTTCTACG+CGG | 0.759656 | 2.3:+722038 | None:intergenic |
| GTAGTGAGAAATGAATAACA+GGG | 0.781956 | 2.3:+722290 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTTTATTTGATTATAA+TGG | - | chr2.3:722455-722474 | MS.gene86947:CDS | 10.0% |
| !! | ATTGTTTATTTGATTATAAT+GGG | - | chr2.3:722456-722475 | MS.gene86947:CDS | 10.0% |
| !! | TTGTTTATTTGATTATAATG+GGG | - | chr2.3:722457-722476 | MS.gene86947:CDS | 15.0% |
| !! | AATTTGACTACTACTATTAT+TGG | - | chr2.3:722204-722223 | MS.gene86947:CDS | 20.0% |
| !! | ATTTGACTACTACTATTATT+GGG | - | chr2.3:722205-722224 | MS.gene86947:CDS | 20.0% |
| !! | CAAATAAACAATTAAAACAC+CGG | + | chr2.3:722448-722467 | None:intergenic | 20.0% |
| !! | TGTTTATTTGATTATAATGG+GGG | - | chr2.3:722458-722477 | MS.gene86947:CDS | 20.0% |
| !!! | ATTGTCTTGATTATTTTGAT+GGG | - | chr2.3:722282-722301 | MS.gene86947:CDS | 20.0% |
| !!! | TGTTTTGACTAATTTTGATA+AGG | - | chr2.3:722968-722987 | MS.gene86947:CDS | 20.0% |
| ! | AAATATGATGAAGAACTAAC+AGG | + | chr2.3:721997-722016 | None:intergenic | 25.0% |
| ! | TTTGACTACTACTATTATTG+GGG | - | chr2.3:722206-722225 | MS.gene86947:CDS | 25.0% |
| !! | CAAAGATTATCTTTTGATGA+GGG | - | chr2.3:722054-722073 | MS.gene86947:CDS | 25.0% |
| !! | TCAAAGATTATCTTTTGATG+AGG | - | chr2.3:722053-722072 | MS.gene86947:CDS | 25.0% |
| !!! | ACTAATTTTGATAAGGATCT+TGG | - | chr2.3:722975-722994 | MS.gene86947:CDS | 25.0% |
| !!! | GATTGTCTTGATTATTTTGA+TGG | - | chr2.3:722281-722300 | MS.gene86947:CDS | 25.0% |
| !!! | TGTATTATTTTGAACAATGC+CGG | - | chr2.3:722426-722445 | MS.gene86947:CDS | 25.0% |
| !!! | TTGTCTTGATTATTTTGATG+GGG | - | chr2.3:722283-722302 | MS.gene86947:CDS | 25.0% |
| ACATATGCATTTGTCATGAT+TGG | + | chr2.3:722789-722808 | None:intergenic | 30.0% | |
| CTTAATCTTATTGCAACAAG+AGG | + | chr2.3:723281-723300 | None:intergenic | 30.0% | |
| GCAATAAGATTAAGTCATCA+GGG | - | chr2.3:723287-723306 | MS.gene86947:CDS | 30.0% | |
| GTAGTGAGAAATGAATAACA+GGG | + | chr2.3:723070-723089 | None:intergenic | 30.0% | |
| TGCAATAAGATTAAGTCATC+AGG | - | chr2.3:723286-723305 | MS.gene86947:CDS | 30.0% | |
| ! | GATAATTATCCTCTTGTTGT+TGG | - | chr2.3:722138-722157 | MS.gene86947:CDS | 30.0% |
| ! | GATTTTGTCATGGTTAATGT+TGG | - | chr2.3:723331-723350 | MS.gene86947:CDS | 30.0% |
| !! | CTGTTGGTTCTCATATATAT+CGG | - | chr2.3:723173-723192 | MS.gene86947:CDS | 30.0% |
| !! | GATTTTGATGAATCATTCTG+TGG | + | chr2.3:722030-722049 | None:intergenic | 30.0% |
| !!! | AAAGTTCTTGGTGTTGTTTT+AGG | - | chr2.3:722258-722277 | MS.gene86947:CDS | 30.0% |
| !!! | AAGTTCTTGGTGTTGTTTTA+GGG | - | chr2.3:722259-722278 | MS.gene86947:CDS | 30.0% |
| !!! | GCTTTTATTAAGCTTGTTGA+AGG | - | chr2.3:722690-722709 | MS.gene86947:CDS | 30.0% |
| !!! | TATTTTGATGGGGATTTTGT+CGG | - | chr2.3:722293-722312 | MS.gene86947:CDS | 30.0% |
| AACAACACCAAGAACTTTCA+TGG | + | chr2.3:722256-722275 | None:intergenic | 35.0% | |
| AATCTTATTGCAACAAGAGG+TGG | + | chr2.3:723278-723297 | None:intergenic | 35.0% | |
| AGATGACGCTTTACACATAA+CGG | + | chr2.3:722349-722368 | None:intergenic | 35.0% | |
| AGTGGATACTTTGGTATTTG+AGG | - | chr2.3:723097-723116 | MS.gene86947:CDS | 35.0% | |
| ATCTCAGATAAAATCCTAGC+AGG | + | chr2.3:722405-722424 | None:intergenic | 35.0% | |
| ATCTTATCAAGCGAACAAAG+TGG | + | chr2.3:722597-722616 | None:intergenic | 35.0% | |
| CAGGGAAAACAAGTATCAAA+TGG | + | chr2.3:723052-723071 | None:intergenic | 35.0% | |
| CGTAGTGAGAAATGAATAAC+AGG | + | chr2.3:723071-723090 | None:intergenic | 35.0% | |
| CTCTTCCTACTTTCTGATAA+AGG | + | chr2.3:723131-723150 | None:intergenic | 35.0% | |
| GTCATGGTTAATGTTGGTAT+TGG | - | chr2.3:723337-723356 | MS.gene86947:CDS | 35.0% | |
| GTGGATACTTTGGTATTTGA+GGG | - | chr2.3:723098-723117 | MS.gene86947:CDS | 35.0% | |
| TATTATTGGGGCAGGAATTA+TGG | - | chr2.3:722218-722237 | MS.gene86947:CDS | 35.0% | |
| TTAAAAGCTGTCCAGATGTT+TGG | + | chr2.3:723212-723231 | None:intergenic | 35.0% | |
| TTCCTACTTTCTGATAAAGG+AGG | + | chr2.3:723128-723147 | None:intergenic | 35.0% | |
| TTGAACTATATCGTTCGAGT+CGG | - | chr2.3:723017-723036 | MS.gene86947:CDS | 35.0% | |
| TTGATAAGGATCTTGGAATC+CGG | - | chr2.3:722982-723001 | MS.gene86947:CDS | 35.0% | |
| ! | AGATTATCTTTTGATGAGGG+TGG | - | chr2.3:722057-722076 | MS.gene86947:CDS | 35.0% |
| ! | ATACCAAAGTATCCACTGTT+TGG | + | chr2.3:723094-723113 | None:intergenic | 35.0% |
| ! | ATGTGTAAAGCGTCATCTTA+TGG | - | chr2.3:722351-722370 | MS.gene86947:CDS | 35.0% |
| ! | CACTACAATTTTGTGCATCA+TGG | - | chr2.3:722887-722906 | MS.gene86947:CDS | 35.0% |
| ! | GGAAATTAGTGTCGAATTGT+TGG | - | chr2.3:722314-722333 | MS.gene86947:CDS | 35.0% |
| !! | ATCTAAGGTTGATGATGATG+AGG | - | chr2.3:722092-722111 | MS.gene86947:CDS | 35.0% |
| !! | GCTTGTGATTCTTGTTGTTA+TGG | - | chr2.3:722557-722576 | MS.gene86947:CDS | 35.0% |
| !! | TGTGATTCTTGTTGTTATGG+TGG | - | chr2.3:722560-722579 | MS.gene86947:CDS | 35.0% |
| !!! | TCCTGATTTTAGCTCGAAAA+AGG | - | chr2.3:722737-722756 | MS.gene86947:CDS | 35.0% |
| AAAGATTGATGCTCCTAGGA+TGG | - | chr2.3:722713-722732 | MS.gene86947:CDS | 40.0% | |
| AAAGTAGGAAGAGATCGCTA+GGG | - | chr2.3:723138-723157 | MS.gene86947:CDS | 40.0% | |
| AAGGAAAGATTGATGCTCCT+AGG | - | chr2.3:722709-722728 | MS.gene86947:CDS | 40.0% | |
| ACTACTACTATTATTGGGGC+AGG | - | chr2.3:722210-722229 | MS.gene86947:CDS | 40.0% | |
| ATCCCCGAATAATAGGTAAC+CGG | + | chr2.3:722934-722953 | None:intergenic | 40.0% | |
| ATGACAAAATCCGTTCTACG+CGG | + | chr2.3:723322-723341 | None:intergenic | 40.0% | |
| CACCTCCTTTATCAGAAAGT+AGG | - | chr2.3:723123-723142 | MS.gene86947:CDS | 40.0% | |
| CAGTATCATCCCCGAATAAT+AGG | + | chr2.3:722941-722960 | None:intergenic | 40.0% | |
| CATCATGGTTTATGCTGCAA+CGG | - | chr2.3:722902-722921 | MS.gene86947:CDS | 40.0% | |
| CCTTCAAGCTCGTTGTATAT+CGG | + | chr2.3:722831-722850 | None:intergenic | 40.0% | |
| CTAAAATCAGGAACCATCCT+AGG | + | chr2.3:722729-722748 | None:intergenic | 40.0% | |
| CTGTCCGGTTACCTATTATT+CGG | - | chr2.3:722927-722946 | MS.gene86947:CDS | 40.0% | |
| GACTCGAACGATATAGTTCA+AGG | + | chr2.3:723018-723037 | None:intergenic | 40.0% | |
| GAGGTTGTTCAACATGCTAT+GGG | - | chr2.3:722375-722394 | MS.gene86947:CDS | 40.0% | |
| GTACCATGATTCCAAACATC+TGG | - | chr2.3:723198-723217 | MS.gene86947:CDS | 40.0% | |
| GTCAAATTAAACACAGCACC+AGG | + | chr2.3:722192-722211 | None:intergenic | 40.0% | |
| GTTAGCATTGTAGGAGTTGT+CGG | - | chr2.3:723368-723387 | MS.gene86947:CDS | 40.0% | |
| GTTGGTCCTATTCCAAATCA+CGG | - | chr2.3:722156-722175 | MS.gene86947:CDS | 40.0% | |
| TAAGTTCACAGGTGCAACAA+CGG | - | chr2.3:723229-723248 | MS.gene86947:CDS | 40.0% | |
| TAGCTCGAAAAAGGCTATCT+TGG | - | chr2.3:722746-722765 | MS.gene86947:CDS | 40.0% | |
| TATACAACGAGCTTGAAGGT+AGG | - | chr2.3:722832-722851 | MS.gene86947:CDS | 40.0% | |
| TCTTGGAATCCGGTTTAGTT+CGG | - | chr2.3:722992-723011 | MS.gene86947:CDS | 40.0% | |
| TGAGGTTGTTCAACATGCTA+TGG | - | chr2.3:722374-722393 | MS.gene86947:CDS | 40.0% | |
| TGTCCGGTTACCTATTATTC+GGG | - | chr2.3:722928-722947 | MS.gene86947:CDS | 40.0% | |
| TTGGTCCTATTCCAAATCAC+GGG | - | chr2.3:722157-722176 | MS.gene86947:CDS | 40.0% | |
| TTGTTCAACATGCTATGGGT+AGG | - | chr2.3:722379-722398 | MS.gene86947:CDS | 40.0% | |
| ! | AGGGGTTTTTGATCAGTTGA+TGG | - | chr2.3:722509-722528 | MS.gene86947:CDS | 40.0% |
| ! | ATAATGGGGGATGTTATGTC+CGG | - | chr2.3:722471-722490 | MS.gene86947:CDS | 40.0% |
| ! | GGGGTTTTTGATCAGTTGAT+GGG | - | chr2.3:722510-722529 | MS.gene86947:CDS | 40.0% |
| ! | TAAAGCGTCATCTTATGGTG+AGG | - | chr2.3:722356-722375 | MS.gene86947:CDS | 40.0% |
| ! | TATCTTTTGATGAGGGTGGT+GGG | - | chr2.3:722061-722080 | MS.gene86947:CDS | 40.0% |
| ! | TGTCCAGATGTTTGGAATCA+TGG | + | chr2.3:723204-723223 | None:intergenic | 40.0% |
| ! | TTAGTGTCGAATTGTTGGTG+AGG | - | chr2.3:722319-722338 | MS.gene86947:CDS | 40.0% |
| ! | TTATCTTTTGATGAGGGTGG+TGG | - | chr2.3:722060-722079 | MS.gene86947:CDS | 40.0% |
| !! | GGGTTTTTGATCAGTTGATG+GGG | - | chr2.3:722511-722530 | MS.gene86947:CDS | 40.0% |
| !! | TAAGGTTGATGATGATGAGG+AGG | - | chr2.3:722095-722114 | MS.gene86947:CDS | 40.0% |
| !! | TTGATCAGTTGATGGGGAAT+GGG | - | chr2.3:722517-722536 | MS.gene86947:CDS | 40.0% |
| !! | TTTGATCAGTTGATGGGGAA+TGG | - | chr2.3:722516-722535 | MS.gene86947:CDS | 40.0% |
| !!! | GCCTTTTTCGAGCTAAAATC+AGG | + | chr2.3:722741-722760 | None:intergenic | 40.0% |
| !!! | TGGACAGCTTTTAAGTTCAC+AGG | - | chr2.3:723218-723237 | MS.gene86947:CDS | 40.0% |
| !!! | TGGTGGGTTTTTAGGATCTA+AGG | - | chr2.3:722077-722096 | MS.gene86947:CDS | 40.0% |
| ACGCCAAACAGTGGATACTT+TGG | - | chr2.3:723088-723107 | MS.gene86947:CDS | 45.0% | |
| AGAAGATGAACCGAGTAGGA+AGG | - | chr2.3:722862-722881 | MS.gene86947:CDS | 45.0% | |
| AGTTCAAGGCCGAACTAAAC+CGG | + | chr2.3:723004-723023 | None:intergenic | 45.0% | |
| CCAAGAACTTTCATGGTAGC+AGG | + | chr2.3:722249-722268 | None:intergenic | 45.0% | |
| CCCTAAATGATGAACCGAAC+CGG | + | chr2.3:722493-722512 | None:intergenic | 45.0% | |
| CCGATATACAACGAGCTTGA+AGG | - | chr2.3:722828-722847 | MS.gene86947:CDS | 45.0% | |
| CCTGCTACCATGAAAGTTCT+TGG | - | chr2.3:722246-722265 | MS.gene86947:CDS | 45.0% | |
| GAAAGTAGGAAGAGATCGCT+AGG | - | chr2.3:723137-723156 | MS.gene86947:CDS | 45.0% | |
| GAAGATGAACCGAGTAGGAA+GGG | - | chr2.3:722863-722882 | MS.gene86947:CDS | 45.0% | |
| GCTGTGACTGTTAGCATTGT+AGG | - | chr2.3:723359-723378 | MS.gene86947:CDS | 45.0% | |
| GGAATAGGACCAACAACAAG+AGG | + | chr2.3:722150-722169 | None:intergenic | 45.0% | |
| GTCCGGTTACCTATTATTCG+GGG | - | chr2.3:722929-722948 | MS.gene86947:CDS | 45.0% | |
| TGTCGGCAATGTCTATAGCA+TGG | - | chr2.3:723385-723404 | MS.gene86947:CDS | 45.0% | |
| TTGTAGTGACCCTTCCTACT+CGG | + | chr2.3:722875-722894 | None:intergenic | 45.0% | |
| TTTCTCACTACGCCAAACAG+TGG | - | chr2.3:723079-723098 | MS.gene86947:CDS | 45.0% | |
| !! | CCGGTTCGGTTCATCATTTA+GGG | - | chr2.3:722490-722509 | MS.gene86947:CDS | 45.0% |
| !! | CGGTTCGGTTCATCATTTAG+GGG | - | chr2.3:722491-722510 | MS.gene86947:CDS | 45.0% |
| !! | GCGTAGAACGGATTTTGTCA+TGG | - | chr2.3:723321-723340 | MS.gene86947:CDS | 45.0% |
| !! | TCCGGTTCGGTTCATCATTT+AGG | - | chr2.3:722489-722508 | MS.gene86947:CDS | 45.0% |
| !! | TGATCAGTTGATGGGGAATG+GGG | - | chr2.3:722518-722537 | MS.gene86947:CDS | 45.0% |
| AGGGCTGACTGCAATTCTGT+TGG | - | chr2.3:723157-723176 | MS.gene86947:CDS | 50.0% | |
| CCTACTCGGTTCATCTTCTG+CGG | + | chr2.3:722861-722880 | None:intergenic | 50.0% | |
| CCTATTCCAAATCACGGGTC+TGG | - | chr2.3:722162-722181 | MS.gene86947:CDS | 50.0% | |
| GAGATTTGAGCCGCGTAGAA+CGG | - | chr2.3:723309-723328 | MS.gene86947:CDS | 50.0% | |
| GAGCTTGACTTCAGCTGCAT+CGG | - | chr2.3:722626-722645 | MS.gene86947:CDS | 50.0% | |
| ! | CCAGACCCGTGATTTGGAAT+AGG | + | chr2.3:722165-722184 | None:intergenic | 50.0% |
| ! | GCAACAACGGCTGTTTCGTT+AGG | - | chr2.3:723242-723261 | MS.gene86947:CDS | 50.0% |
| ! | GTTGATGGGGAATGGGGTTT+GGG | - | chr2.3:722524-722543 | MS.gene86947:CDS | 50.0% |
| !! | AGTTGATGGGGAATGGGGTT+TGG | - | chr2.3:722523-722542 | MS.gene86947:CDS | 50.0% |
| !!! | GATGAGGGTGGTGGGTTTTT+AGG | - | chr2.3:722069-722088 | MS.gene86947:CDS | 50.0% |
| AATCACGGGTCTGGTGTACC+TGG | - | chr2.3:722171-722190 | MS.gene86947:CDS | 55.0% | |
| ATGCTATGGGTAGGCCTGCT+AGG | - | chr2.3:722388-722407 | MS.gene86947:CDS | 55.0% | |
| CCGCAGAAGATGAACCGAGT+AGG | - | chr2.3:722858-722877 | MS.gene86947:CDS | 55.0% | |
| CTTGACTTCAGCTGCATCGG+TGG | - | chr2.3:722629-722648 | MS.gene86947:CDS | 55.0% | |
| GGGGGATGTTATGTCCGGTT+CGG | - | chr2.3:722476-722495 | MS.gene86947:CDS | 55.0% | |
| GGTACACCAGACCCGTGATT+TGG | + | chr2.3:722171-722190 | None:intergenic | 55.0% | |
| TATGCTGCAACGGCACTGTC+CGG | - | chr2.3:722912-722931 | MS.gene86947:CDS | 55.0% | |
| ! | GGAATGGGGTTTGGGATCAG+AGG | - | chr2.3:722532-722551 | MS.gene86947:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 721958 | 723421 | 721958 | ID=MS.gene86947 |
| chr2.3 | mRNA | 721958 | 723421 | 721958 | ID=MS.gene86947.t1;Parent=MS.gene86947 |
| chr2.3 | exon | 721958 | 723421 | 721958 | ID=MS.gene86947.t1.exon1;Parent=MS.gene86947.t1 |
| chr2.3 | CDS | 721958 | 723421 | 721958 | ID=cds.MS.gene86947.t1;Parent=MS.gene86947.t1 |
| Gene Sequence |
| Protein sequence |
