Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87061.t1 | XP_003623570.1 | 88.4 | 571 | 28 | 3 | 1 | 534 | 1 | 570 | 3.10E-238 | 834.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87061.t1 | F4ISY0 | 35.0 | 520 | 236 | 11 | 14 | 486 | 6 | 470 | 9.3e-50 | 199.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87061.t1 | G7KX28 | 88.4 | 571 | 28 | 3 | 1 | 534 | 1 | 570 | 2.2e-238 | 834.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene87061 | 0.821164 | 4.67E-53 | -1.69E-46 |
| MS.gene052611 | MS.gene87061 | 0.805209 | 1.49E-49 | -1.69E-46 |
| MS.gene052612 | MS.gene87061 | 0.80519 | 1.50E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene87061 | 0.835973 | 1.23E-56 | -1.69E-46 |
| MS.gene055891 | MS.gene87061 | 0.811394 | 7.16E-51 | -1.69E-46 |
| MS.gene061176 | MS.gene87061 | 0.80232 | 5.93E-49 | -1.69E-46 |
| MS.gene061177 | MS.gene87061 | 0.802256 | 6.12E-49 | -1.69E-46 |
| MS.gene061178 | MS.gene87061 | 0.802366 | 5.80E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87061.t1 | MTR_7g072550 | 89.667 | 571 | 21 | 3 | 1 | 534 | 1 | 570 | 0.0 | 994 |
| MS.gene87061.t1 | MTR_4g029090 | 61.384 | 549 | 146 | 12 | 12 | 516 | 11 | 537 | 0.0 | 543 |
| MS.gene87061.t1 | MTR_5g083980 | 36.464 | 543 | 268 | 14 | 26 | 526 | 27 | 534 | 6.14e-68 | 228 |
| MS.gene87061.t1 | MTR_3g072350 | 35.849 | 583 | 267 | 19 | 26 | 526 | 21 | 578 | 1.54e-67 | 228 |
| MS.gene87061.t1 | MTR_3g072350 | 37.363 | 455 | 209 | 11 | 26 | 419 | 21 | 460 | 3.11e-59 | 204 |
| MS.gene87061.t1 | MTR_3g101660 | 30.328 | 244 | 166 | 2 | 176 | 415 | 595 | 838 | 3.09e-19 | 92.0 |
| MS.gene87061.t1 | MTR_1g019490 | 28.163 | 245 | 171 | 2 | 176 | 415 | 576 | 820 | 2.00e-13 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87061.t1 | AT2G38370 | 39.711 | 554 | 231 | 13 | 14 | 519 | 23 | 521 | 9.89e-94 | 296 |
| MS.gene87061.t1 | AT2G38370 | 39.711 | 554 | 231 | 13 | 14 | 519 | 6 | 504 | 1.06e-93 | 295 |
| MS.gene87061.t1 | AT2G40480 | 35.350 | 529 | 247 | 14 | 26 | 526 | 54 | 515 | 2.36e-58 | 202 |
| MS.gene87061.t1 | AT3G51720 | 37.795 | 508 | 175 | 18 | 26 | 519 | 8 | 388 | 8.45e-57 | 195 |
| MS.gene87061.t1 | AT3G56270 | 33.590 | 390 | 174 | 13 | 26 | 411 | 40 | 348 | 4.68e-29 | 120 |
| MS.gene87061.t1 | AT2G26570 | 31.923 | 260 | 165 | 4 | 167 | 415 | 453 | 711 | 2.24e-20 | 95.5 |
| MS.gene87061.t1 | AT2G26570 | 38.843 | 121 | 54 | 3 | 11 | 123 | 145 | 253 | 4.08e-13 | 72.8 |
| MS.gene87061.t1 | AT2G26570 | 31.923 | 260 | 165 | 4 | 167 | 415 | 453 | 711 | 2.24e-20 | 95.5 |
| MS.gene87061.t1 | AT2G26570 | 38.843 | 121 | 54 | 3 | 11 | 123 | 145 | 253 | 4.08e-13 | 72.8 |
| MS.gene87061.t1 | AT5G42880 | 31.646 | 237 | 148 | 4 | 193 | 415 | 413 | 649 | 3.13e-13 | 73.2 |
| MS.gene87061.t1 | AT4G33390 | 44.554 | 101 | 50 | 4 | 24 | 123 | 149 | 244 | 3.19e-13 | 73.2 |
| MS.gene87061.t1 | AT4G33390 | 30.364 | 247 | 168 | 2 | 176 | 418 | 460 | 706 | 1.05e-12 | 71.2 |
| MS.gene87061.t1 | AT1G45545 | 26.860 | 242 | 152 | 2 | 176 | 415 | 443 | 661 | 8.56e-11 | 65.1 |
| MS.gene87061.t1 | AT1G45545 | 26.860 | 242 | 152 | 2 | 176 | 415 | 444 | 662 | 8.71e-11 | 65.1 |
Find 93 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCGGTTACTTGATGTAAA+TGG | 0.201330 | 7.4:-32041920 | MS.gene87061:CDS |
| TTCTTCAAGGGCCTTCTTGC+AGG | 0.218507 | 7.4:+32042086 | None:intergenic |
| ATCTCTCACTTCTCATTCTA+AGG | 0.237177 | 7.4:-32044959 | MS.gene87061:intron |
| TGATGTAAATGGATTGAATT+TGG | 0.242394 | 7.4:-32041909 | MS.gene87061:CDS |
| AGCAATATCATGAGTAGTTT+TGG | 0.271575 | 7.4:+32042719 | None:intergenic |
| TCTGCTAAGAGAAAGAAATT+TGG | 0.281302 | 7.4:-32041662 | MS.gene87061:CDS |
| TGCCACTTGCAGTCTTAATC+TGG | 0.293211 | 7.4:+32042566 | None:intergenic |
| CTGCTAAGAGAAAGAAATTT+GGG | 0.308164 | 7.4:-32041661 | MS.gene87061:CDS |
| TGATAAGAACTGCCGAAATT+AGG | 0.313654 | 7.4:-32042398 | MS.gene87061:CDS |
| CTTGCAGTCTTAATCTGGTT+TGG | 0.345195 | 7.4:+32042571 | None:intergenic |
| CCCTTTGTAGAGCTTCTTCA+AGG | 0.349108 | 7.4:+32042073 | None:intergenic |
| TGCCGCAACCAACCTAATTT+CGG | 0.360596 | 7.4:+32042386 | None:intergenic |
| GTGGCAAAAGGTGCTGCTTC+TGG | 0.361274 | 7.4:-32042549 | MS.gene87061:CDS |
| GCTTCGGTGGTGTTGGCTAC+TGG | 0.376012 | 7.4:-32045002 | MS.gene87061:CDS |
| TTCTCCAGACTTGATACTAA+TGG | 0.384913 | 7.4:-32042769 | MS.gene87061:CDS |
| GAGCAAACTGAGAAAGAAAA+TGG | 0.397534 | 7.4:-32041701 | MS.gene87061:CDS |
| GATAGAGTCGGCTTTAAAAC+AGG | 0.402456 | 7.4:+32041869 | None:intergenic |
| TTTGGTTTAGCTCTTCTTCA+AGG | 0.406542 | 7.4:+32042589 | None:intergenic |
| ATCGGTTCTTCAAACTCTTC+TGG | 0.412083 | 7.4:+32041812 | None:intergenic |
| TTAAAGCCGACTCTATCAAT+AGG | 0.421757 | 7.4:-32041863 | MS.gene87061:CDS |
| CTGAAACAATATTGAATCTC+GGG | 0.430024 | 7.4:-32042908 | MS.gene87061:CDS |
| AATTCCATTAGTATCAAGTC+TGG | 0.436262 | 7.4:+32042765 | None:intergenic |
| AAACAGCAGAAGGTGTCATT+AGG | 0.438752 | 7.4:-32041764 | MS.gene87061:CDS |
| GACGACGTATCAAGCTGAAC+CGG | 0.439494 | 7.4:-32045115 | MS.gene87061:CDS |
| ATCTTCAAAGAACAAGATAA+TGG | 0.450459 | 7.4:-32045088 | MS.gene87061:CDS |
| AAGAACTGATCTTAAAAGAA+AGG | 0.452126 | 7.4:-32043013 | MS.gene87061:CDS |
| GCTTCTTTCACAGATTCAAA+TGG | 0.467986 | 7.4:+32045033 | None:intergenic |
| ATAAGAAACTAGAGAAAGAA+AGG | 0.469803 | 7.4:-32042668 | MS.gene87061:CDS |
| AGGCATAGAACATTCCTTCA+TGG | 0.469854 | 7.4:+32042803 | None:intergenic |
| GAGAGATGAAAGATTGTGAA+AGG | 0.470849 | 7.4:+32044975 | None:intergenic |
| TCTGAAACAATATTGAATCT+CGG | 0.479141 | 7.4:-32042909 | MS.gene87061:CDS |
| TGTAGATGAGAAAGAAGTAA+AGG | 0.480056 | 7.4:-32042859 | MS.gene87061:CDS |
| CGCTTCTGCATACACTCGTC+TGG | 0.489501 | 7.4:+32042282 | None:intergenic |
| AGAACTGATCTTAAAAGAAA+GGG | 0.491872 | 7.4:-32043012 | MS.gene87061:CDS |
| CTGATCATAGGAGAGATATT+CGG | 0.493121 | 7.4:-32041937 | MS.gene87061:intron |
| AAAGAAGCTGTTAACCGCTT+CGG | 0.493823 | 7.4:-32045018 | MS.gene87061:CDS |
| CAAGGAGAAACTAGAGGAGC+AGG | 0.495153 | 7.4:-32043051 | MS.gene87061:CDS |
| CCTTGTCAAGCTCTTCTATG+TGG | 0.495621 | 7.4:+32043069 | None:intergenic |
| AGAGATGAAAGATTGTGAAA+GGG | 0.497699 | 7.4:+32044976 | None:intergenic |
| AGTCGGCTTTAAAACAGGCT+TGG | 0.498226 | 7.4:+32041874 | None:intergenic |
| TGCCGAAATTAGGTTGGTTG+CGG | 0.498655 | 7.4:-32042388 | MS.gene87061:CDS |
| AGGGTAGAGGCTGCAGATAG+AGG | 0.502926 | 7.4:-32042054 | MS.gene87061:CDS |
| ATTCACCTCAAGTTCAGCAT+TGG | 0.508102 | 7.4:+32041587 | None:intergenic |
| GTTAACCGCTTCGGTGGTGT+TGG | 0.512875 | 7.4:-32045009 | MS.gene87061:CDS |
| GGGTAGAGGCTGCAGATAGA+GGG | 0.517190 | 7.4:-32042053 | MS.gene87061:CDS |
| AGAGGAGCAGGCAAGAGCGT+TGG | 0.517338 | 7.4:-32043039 | MS.gene87061:CDS |
| AGTTCTGTCGTAACATCTAA+AGG | 0.519381 | 7.4:+32042522 | None:intergenic |
| CAATAGGACAAATACTGAGC+AGG | 0.522093 | 7.4:-32041847 | MS.gene87061:CDS |
| GGCATAGAACATTCCTTCAT+GGG | 0.522442 | 7.4:+32042804 | None:intergenic |
| GATACTAATGGAATTGAAGC+AGG | 0.525759 | 7.4:-32042757 | MS.gene87061:CDS |
| TTAAGACTGCAAGTGGCAAA+AGG | 0.531244 | 7.4:-32042561 | MS.gene87061:CDS |
| TCGTAAAGCTCGAGAGGCAG+AGG | 0.536617 | 7.4:-32042217 | MS.gene87061:CDS |
| TCAGTTTGCTCGTCAAACAA+TGG | 0.549642 | 7.4:+32041713 | None:intergenic |
| AAGAACTGCCGAAATTAGGT+TGG | 0.552434 | 7.4:-32042394 | MS.gene87061:CDS |
| ATTTGTCCTATTGATAGAGT+CGG | 0.552627 | 7.4:+32041857 | None:intergenic |
| CGGCCTCTGAACTCAATCGA+TGG | 0.552819 | 7.4:+32042499 | None:intergenic |
| CCTTTGTAGAGCTTCTTCAA+GGG | 0.554451 | 7.4:+32042074 | None:intergenic |
| GAACCTCAGACGGACTCGAT+TGG | 0.556300 | 7.4:+32042832 | None:intergenic |
| TTTGAAGAACCGATGGTGCA+TGG | 0.559513 | 7.4:-32041803 | MS.gene87061:CDS |
| AACCAGATTAAGACTGCAAG+TGG | 0.562004 | 7.4:-32042568 | MS.gene87061:CDS |
| TGAGGTTCTTCAACCCATGA+AGG | 0.563383 | 7.4:-32042817 | MS.gene87061:CDS |
| TTGTTCTTTGAAGATGAACC+CGG | 0.563644 | 7.4:+32045096 | None:intergenic |
| ACTCGTCTGGTGTACCCTCA+TGG | 0.568839 | 7.4:+32042295 | None:intergenic |
| CAATGCGTTAATTTCTGCAA+GGG | 0.572501 | 7.4:+32042323 | None:intergenic |
| AGAAGTTCAAACCTGCAAGA+AGG | 0.580057 | 7.4:-32042097 | MS.gene87061:CDS |
| CCTTGAAGAAGCTCTACAAA+GGG | 0.582325 | 7.4:-32042073 | MS.gene87061:CDS |
| TTTGAAATCAAAGCTGCAGA+AGG | 0.585814 | 7.4:-32042937 | MS.gene87061:CDS |
| GTGTCATTAGGTCATATGCT+TGG | 0.589947 | 7.4:-32041752 | MS.gene87061:CDS |
| CCCTTGAAGAAGCTCTACAA+AGG | 0.590773 | 7.4:-32042074 | MS.gene87061:CDS |
| ATGGGTTGAAGAACCTCAGA+CGG | 0.594605 | 7.4:+32042822 | None:intergenic |
| ACAATGCGTTAATTTCTGCA+AGG | 0.601615 | 7.4:+32042322 | None:intergenic |
| AGAAACCAATGCTGAACTTG+AGG | 0.604096 | 7.4:-32041592 | MS.gene87061:CDS |
| AGAAGCTCTACAAAGGGTAG+AGG | 0.607835 | 7.4:-32042067 | MS.gene87061:CDS |
| ACTATTTCTCCATGCACCAT+CGG | 0.609425 | 7.4:+32041794 | None:intergenic |
| ACGACGTATCAAGCTGAACC+GGG | 0.613614 | 7.4:-32045114 | MS.gene87061:CDS |
| GGTTGCGGCAAGGAAAATGA+AGG | 0.614865 | 7.4:-32042373 | MS.gene87061:CDS |
| AAATTAGGTTGGTTGCGGCA+AGG | 0.614952 | 7.4:-32042383 | MS.gene87061:CDS |
| GAAGCTGTTAACCGCTTCGG+TGG | 0.621394 | 7.4:-32045015 | MS.gene87061:CDS |
| AAACCAATCGAGTCCGTCTG+AGG | 0.623782 | 7.4:-32042835 | MS.gene87061:CDS |
| AACGCATTGTCTAGCCATGA+GGG | 0.624553 | 7.4:-32042309 | MS.gene87061:CDS |
| TAACGCATTGTCTAGCCATG+AGG | 0.637064 | 7.4:-32042310 | MS.gene87061:CDS |
| AGAAGAGTTTGAAGAACCGA+TGG | 0.638252 | 7.4:-32041810 | MS.gene87061:CDS |
| TCAAGTCTGGAGAAGATACA+CGG | 0.640414 | 7.4:+32042778 | None:intergenic |
| TCTAACTCGTAAAGCTCGAG+AGG | 0.643019 | 7.4:-32042223 | MS.gene87061:CDS |
| CACTTGAGAAAACCCGTGAG+AGG | 0.664946 | 7.4:-32042641 | MS.gene87061:CDS |
| AGTCTCGATGAAACAGCAGA+AGG | 0.667829 | 7.4:-32041774 | MS.gene87061:CDS |
| AGTAGCCAACACCACCGAAG+CGG | 0.669268 | 7.4:+32045004 | None:intergenic |
| CCACATAGAAGAGCTTGACA+AGG | 0.669604 | 7.4:-32043069 | MS.gene87061:CDS |
| ACTCCATCGATTGAGTTCAG+AGG | 0.670068 | 7.4:-32042502 | MS.gene87061:CDS |
| CAAGTCTGGAGAAGATACAC+GGG | 0.678628 | 7.4:+32042779 | None:intergenic |
| GCTTGACAAGGAGAAACTAG+AGG | 0.679130 | 7.4:-32043057 | MS.gene87061:CDS |
| TCTGGAGAAGATACACGGGA+AGG | 0.691888 | 7.4:+32042783 | None:intergenic |
| CGAGTGTATGCAGAAGCGCG+AGG | 0.736204 | 7.4:-32042277 | MS.gene87061:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr7.4:32041842-32041823 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr7.4:32041823-32041842 | MS.gene87061:CDS | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr7.4:32041841-32041822 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr7.4:32041822-32041841 | MS.gene87061:CDS | 0.0% |
| !! | ATATATATATATATATGTAG+AGG | - | chr7.4:32042065-32042084 | MS.gene87061:CDS | 10.0% |
| !! | GAATGATAATTGTTATAATA+AGG | + | chr7.4:32042207-32042226 | None:intergenic | 15.0% |
| !! | TATATATATACATAGAGAAA+TGG | - | chr7.4:32042934-32042953 | MS.gene87061:CDS | 15.0% |
| !!! | AATTGACATTTTTTCATTTT+GGG | + | chr7.4:32043370-32043389 | None:intergenic | 15.0% |
| !!! | ATTTGTTGCATTTTATTTTA+TGG | - | chr7.4:32042761-32042780 | MS.gene87061:CDS | 15.0% |
| !!! | ATTTTGTTTTCAAAATTTTG+GGG | - | chr7.4:32043468-32043487 | MS.gene87061:intron | 15.0% |
| !!! | GATTTTGTTTTCAAAATTTT+GGG | - | chr7.4:32043467-32043486 | MS.gene87061:intron | 15.0% |
| !!! | TTTGTTGCATTTTATTTTAT+GGG | - | chr7.4:32042762-32042781 | MS.gene87061:CDS | 15.0% |
| !! | AAACTATTTGTGTGATTAAT+TGG | - | chr7.4:32042793-32042812 | MS.gene87061:CDS | 20.0% |
| !! | ACAAATTACAATCGAAAATT+AGG | + | chr7.4:32042231-32042250 | None:intergenic | 20.0% |
| !! | CTAAGAAAGTAATTGAAAAA+TGG | + | chr7.4:32042365-32042384 | None:intergenic | 20.0% |
| !! | TTAACTTAACGTATATAGAA+TGG | + | chr7.4:32043233-32043252 | None:intergenic | 20.0% |
| !!! | AAAGTATTGGTATAAGATAT+GGG | - | chr7.4:32043514-32043533 | MS.gene87061:intron | 20.0% |
| !!! | CGATTTTGTTTTCAAAATTT+TGG | - | chr7.4:32043466-32043485 | MS.gene87061:intron | 20.0% |
| !!! | GAATTGACATTTTTTCATTT+TGG | + | chr7.4:32043371-32043390 | None:intergenic | 20.0% |
| !!! | GCAGATGAATATTTTTAAAA+GGG | - | chr7.4:32044591-32044610 | MS.gene87061:intron | 20.0% |
| !!! | GTTCAATTTTCAAATTTTCA+TGG | - | chr7.4:32042413-32042432 | MS.gene87061:CDS | 20.0% |
| ! | AAGAACTGATCTTAAAAGAA+AGG | - | chr7.4:32043714-32043733 | MS.gene87061:intron | 25.0% |
| ! | ACCATTGGATAAAAAATAGA+TGG | + | chr7.4:32042631-32042650 | None:intergenic | 25.0% |
| ! | ACCATTGGATAAAAAATTGA+TGG | - | chr7.4:32042141-32042160 | MS.gene87061:CDS | 25.0% |
| ! | AGAACTGATCTTAAAAGAAA+GGG | - | chr7.4:32043715-32043734 | MS.gene87061:intron | 25.0% |
| ! | ATAAATGATACAATAGAGAG+AGG | - | chr7.4:32042570-32042589 | MS.gene87061:CDS | 25.0% |
| ! | ATAAGAAACTAGAGAAAGAA+AGG | - | chr7.4:32044059-32044078 | MS.gene87061:intron | 25.0% |
| ! | ATCTTCAAAGAACAAGATAA+TGG | - | chr7.4:32041639-32041658 | MS.gene87061:CDS | 25.0% |
| ! | ATGACATATACTATGAGAAT+GGG | + | chr7.4:32042687-32042706 | None:intergenic | 25.0% |
| ! | ATTCCAAAATATAAACCGAA+AGG | + | chr7.4:32042306-32042325 | None:intergenic | 25.0% |
| ! | ATTTGTTCATCTTCAACTTT+CGG | - | chr7.4:32042245-32042264 | MS.gene87061:CDS | 25.0% |
| ! | GAAAACAAAATCGATATGTT+TGG | + | chr7.4:32043459-32043478 | None:intergenic | 25.0% |
| ! | TATAGTTACATTGTTTGTGA+AGG | - | chr7.4:32043197-32043216 | MS.gene87061:intron | 25.0% |
| ! | TGTATGAAGTTTAAAAACTC+TGG | - | chr7.4:32044762-32044781 | MS.gene87061:intron | 25.0% |
| ! | TTCCAAAATATAAACCGAAA+GGG | + | chr7.4:32042305-32042324 | None:intergenic | 25.0% |
| !! | TAGATTCTGGAAAATGATAT+CGG | + | chr7.4:32042271-32042290 | None:intergenic | 25.0% |
| !! | TATCATAAAGTATCATCGAA+GGG | - | chr7.4:32043428-32043447 | MS.gene87061:intron | 25.0% |
| !! | TCTGAAACAATATTGAATCT+CGG | - | chr7.4:32043818-32043837 | MS.gene87061:intron | 25.0% |
| !! | TGATATGTATCTGAAAGTAT+TGG | - | chr7.4:32043501-32043520 | MS.gene87061:intron | 25.0% |
| !! | TTTTATCAAGCAACACTTTA+AGG | + | chr7.4:32041985-32042004 | None:intergenic | 25.0% |
| !!! | AAAATTTTGTTTTGAGTGCT+AGG | - | chr7.4:32042876-32042895 | MS.gene87061:CDS | 25.0% |
| !!! | AAATTTTGTTTTGAGTGCTA+GGG | - | chr7.4:32042877-32042896 | MS.gene87061:CDS | 25.0% |
| !!! | AATCAGAAGTTTTAAAAGCA+CGG | - | chr7.4:32044281-32044300 | MS.gene87061:intron | 25.0% |
| !!! | ACCATCAATTTTTTATCCAA+TGG | + | chr7.4:32042145-32042164 | None:intergenic | 25.0% |
| !!! | ACCATCTATTTTTTATCCAA+TGG | - | chr7.4:32042627-32042646 | MS.gene87061:CDS | 25.0% |
| !!! | ATTGCAAATTTGTTACATTC+AGG | + | chr7.4:32043016-32043035 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTTCAGATAACA+CGG | - | chr7.4:32043113-32043132 | MS.gene87061:intron | 25.0% |
| !!! | CGCAGATGAATATTTTTAAA+AGG | - | chr7.4:32044590-32044609 | MS.gene87061:intron | 25.0% |
| !!! | GAAAGTATTGGTATAAGATA+TGG | - | chr7.4:32043513-32043532 | MS.gene87061:intron | 25.0% |
| !!! | GAATATTTTTAAAAGGGTAG+AGG | - | chr7.4:32044597-32044616 | MS.gene87061:intron | 25.0% |
| !!! | GACTATCAAAATTTTGATAC+CGG | - | chr7.4:32042963-32042982 | MS.gene87061:CDS | 25.0% |
| !!! | TGATGTAAATGGATTGAATT+TGG | - | chr7.4:32044818-32044837 | MS.gene87061:intron | 25.0% |
| AATTCCATTAGTATCAAGTC+TGG | + | chr7.4:32043965-32043984 | None:intergenic | 30.0% | |
| ACACCTTCATAAAAGTAAGT+TGG | + | chr7.4:32041925-32041944 | None:intergenic | 30.0% | |
| ACATTTGTGACATACATACT+AGG | + | chr7.4:32043338-32043357 | None:intergenic | 30.0% | |
| AGAGATGAAAGATTGTGAAA+GGG | + | chr7.4:32041754-32041773 | None:intergenic | 30.0% | |
| AGGACATATACTATGAGAAT+GGG | - | chr7.4:32042085-32042104 | MS.gene87061:CDS | 30.0% | |
| ATAAAAGACACCTTCACAAA+AGG | + | chr7.4:32041870-32041889 | None:intergenic | 30.0% | |
| ATACATAGAGAAATGGTGTT+TGG | - | chr7.4:32042941-32042960 | MS.gene87061:CDS | 30.0% | |
| ATGACGAATGTTGGAAAATT+TGG | - | chr7.4:32043146-32043165 | MS.gene87061:intron | 30.0% | |
| ATGGGTATCTTATATGAGAA+TGG | - | chr7.4:32042103-32042122 | MS.gene87061:CDS | 30.0% | |
| ATTCGGTTACTTGATGTAAA+TGG | - | chr7.4:32044807-32044826 | MS.gene87061:intron | 30.0% | |
| ATTTGTCCTATTGATAGAGT+CGG | + | chr7.4:32044873-32044892 | None:intergenic | 30.0% | |
| CTATTTGTGTGATTAATTGG+TGG | - | chr7.4:32042796-32042815 | MS.gene87061:CDS | 30.0% | |
| CTGAAACAATATTGAATCTC+GGG | - | chr7.4:32043819-32043838 | MS.gene87061:intron | 30.0% | |
| CTGCTAAGAGAAAGAAATTT+GGG | - | chr7.4:32045066-32045085 | MS.gene87061:CDS | 30.0% | |
| GAAGAAGTGAAAATCTAACT+AGG | - | chr7.4:32042541-32042560 | MS.gene87061:CDS | 30.0% | |
| GATGACATATACTATGAGAA+TGG | + | chr7.4:32042688-32042707 | None:intergenic | 30.0% | |
| TCCAAAATATAAACCGAAAG+GGG | + | chr7.4:32042304-32042323 | None:intergenic | 30.0% | |
| TCTGCTAAGAGAAAGAAATT+TGG | - | chr7.4:32045065-32045084 | MS.gene87061:CDS | 30.0% | |
| TGACGAATGTTGGAAAATTT+GGG | - | chr7.4:32043147-32043166 | MS.gene87061:intron | 30.0% | |
| TGAGAATAATTGTCAACCAT+TGG | - | chr7.4:32042126-32042145 | MS.gene87061:CDS | 30.0% | |
| TGAGAATAATTGTCAACCAT+TGG | + | chr7.4:32042145-32042126 | None:intergenic | 30.0% | |
| TGTAGATGAGAAAGAAGTAA+AGG | - | chr7.4:32043868-32043887 | MS.gene87061:intron | 30.0% | |
| ! | AGCAATATCATGAGTAGTTT+TGG | + | chr7.4:32044011-32044030 | None:intergenic | 30.0% |
| ! | ATCATAAAGTATCATCGAAG+GGG | - | chr7.4:32043429-32043448 | MS.gene87061:intron | 30.0% |
| ! | CAAATCTTCAACAAGCTTTT+TGG | + | chr7.4:32043774-32043793 | None:intergenic | 30.0% |
| ! | CATCACATACACTTTATTTG+AGG | - | chr7.4:32042391-32042410 | MS.gene87061:CDS | 30.0% |
| ! | GTATCATAAAGTATCATCGA+AGG | - | chr7.4:32043427-32043446 | MS.gene87061:intron | 30.0% |
| !! | AATTTTGAGTAAACCTCTCA+CGG | + | chr7.4:32044102-32044121 | None:intergenic | 30.0% |
| !! | ACACCAACTTACTTTTATGA+AGG | - | chr7.4:32041919-32041938 | MS.gene87061:CDS | 30.0% |
| !!! | TATCATGAGTAGTTTTGGTT+AGG | + | chr7.4:32044006-32044025 | None:intergenic | 30.0% |
| !!! | TCTCTTTTTTCTGAAATGCT+CGG | + | chr7.4:32044251-32044270 | None:intergenic | 30.0% |
| !!! | TTTTTTTACAAGACACCCTT+TGG | + | chr7.4:32042015-32042034 | None:intergenic | 30.0% |
| ACAATGCGTTAATTTCTGCA+AGG | + | chr7.4:32044408-32044427 | None:intergenic | 35.0% | |
| AGTTCTGTCGTAACATCTAA+AGG | + | chr7.4:32044208-32044227 | None:intergenic | 35.0% | |
| ATATCTCTCCTATGATCAGA+TGG | + | chr7.4:32044789-32044808 | None:intergenic | 35.0% | |
| ATCTCTCACTTCTCATTCTA+AGG | - | chr7.4:32041768-32041787 | MS.gene87061:CDS | 35.0% | |
| ATGGGTATCTTACATGAGAA+TGG | + | chr7.4:32042669-32042688 | None:intergenic | 35.0% | |
| CAATGCGTTAATTTCTGCAA+GGG | + | chr7.4:32044407-32044426 | None:intergenic | 35.0% | |
| CTATCCAATATAACCCCTTT+CGG | - | chr7.4:32042288-32042307 | MS.gene87061:CDS | 35.0% | |
| CTGATCATAGGAGAGATATT+CGG | - | chr7.4:32044790-32044809 | MS.gene87061:intron | 35.0% | |
| GAGAGATGAAAGATTGTGAA+AGG | + | chr7.4:32041755-32041774 | None:intergenic | 35.0% | |
| GAGCAAACTGAGAAAGAAAA+TGG | - | chr7.4:32045026-32045045 | MS.gene87061:CDS | 35.0% | |
| GAGGACATATACTATGAGAA+TGG | - | chr7.4:32042084-32042103 | MS.gene87061:CDS | 35.0% | |
| GATACTAATGGAATTGAAGC+AGG | - | chr7.4:32043970-32043989 | MS.gene87061:intron | 35.0% | |
| GCTTCTTTCACAGATTCAAA+TGG | + | chr7.4:32041697-32041716 | None:intergenic | 35.0% | |
| GGGTTATATTGGATAGATTC+TGG | + | chr7.4:32042284-32042303 | None:intergenic | 35.0% | |
| TAAACCGAAAGGGGTTATAT+TGG | + | chr7.4:32042295-32042314 | None:intergenic | 35.0% | |
| TGATAAAAGACACCACCAAA+GGG | - | chr7.4:32041997-32042016 | MS.gene87061:intron | 35.0% | |
| TGATAAGAACTGCCGAAATT+AGG | - | chr7.4:32044329-32044348 | MS.gene87061:intron | 35.0% | |
| TGATTGTAGATGACGAATGT+TGG | - | chr7.4:32043137-32043156 | MS.gene87061:intron | 35.0% | |
| TTCTCCAGACTTGATACTAA+TGG | - | chr7.4:32043958-32043977 | MS.gene87061:intron | 35.0% | |
| TTGATAAAAGACACCACCAA+AGG | - | chr7.4:32041996-32042015 | MS.gene87061:intron | 35.0% | |
| ! | ACCCCTTTCGGTTTATATTT+TGG | - | chr7.4:32042300-32042319 | MS.gene87061:CDS | 35.0% |
| ! | ATAGAAGACACCTTTTGTGA+AGG | - | chr7.4:32041857-32041876 | MS.gene87061:CDS | 35.0% |
| ! | GTTAGATTTTCACTTCTTCC+TGG | + | chr7.4:32042540-32042559 | None:intergenic | 35.0% |
| ! | TTAAAGCCGACTCTATCAAT+AGG | - | chr7.4:32044864-32044883 | MS.gene87061:intron | 35.0% |
| ! | TTGTTCTTTGAAGATGAACC+CGG | + | chr7.4:32041634-32041653 | None:intergenic | 35.0% |
| ! | TTTGAAATCAAAGCTGCAGA+AGG | - | chr7.4:32043790-32043809 | MS.gene87061:intron | 35.0% |
| !! | ATTTTGAGTAAACCTCTCAC+GGG | + | chr7.4:32044101-32044120 | None:intergenic | 35.0% |
| !! | TTTGGTTTAGCTCTTCTTCA+AGG | + | chr7.4:32044141-32044160 | None:intergenic | 35.0% |
| !! | TTTTGAGTGCTAGGGTTTTT+AGG | - | chr7.4:32042885-32042904 | MS.gene87061:CDS | 35.0% |
| !!! | AGTTTTGGTTAGGTTCAACT+TGG | + | chr7.4:32043996-32044015 | None:intergenic | 35.0% |
| AAAGAAGCTGTTAACCGCTT+CGG | - | chr7.4:32041709-32041728 | MS.gene87061:CDS | 40.0% | |
| AACCAGATTAAGACTGCAAG+TGG | - | chr7.4:32044159-32044178 | MS.gene87061:intron | 40.0% | |
| AAGAACTGCCGAAATTAGGT+TGG | - | chr7.4:32044333-32044352 | MS.gene87061:intron | 40.0% | |
| AGAAACCAATGCTGAACTTG+AGG | - | chr7.4:32045135-32045154 | MS.gene87061:CDS | 40.0% | |
| AGAAGAGTTTGAAGAACCGA+TGG | - | chr7.4:32044917-32044936 | MS.gene87061:intron | 40.0% | |
| AGAAGTTCAAACCTGCAAGA+AGG | - | chr7.4:32044630-32044649 | MS.gene87061:intron | 40.0% | |
| AGGCATAGAACATTCCTTCA+TGG | + | chr7.4:32043927-32043946 | None:intergenic | 40.0% | |
| ATGTGTGTGAATTGTCACGA+CGG | - | chr7.4:32043083-32043102 | MS.gene87061:intron | 40.0% | |
| CAATAGGACAAATACTGAGC+AGG | - | chr7.4:32044880-32044899 | MS.gene87061:intron | 40.0% | |
| CCTTGAAGAAGCTCTACAAA+GGG | - | chr7.4:32044654-32044673 | MS.gene87061:intron | 40.0% | |
| CCTTTGTAGAGCTTCTTCAA+GGG | + | chr7.4:32044656-32044675 | None:intergenic | 40.0% | |
| CTTGCAGTCTTAATCTGGTT+TGG | + | chr7.4:32044159-32044178 | None:intergenic | 40.0% | |
| GACCAACTGTCATGAAAATC+TGG | - | chr7.4:32043542-32043561 | MS.gene87061:intron | 40.0% | |
| GGCATAGAACATTCCTTCAT+GGG | + | chr7.4:32043926-32043945 | None:intergenic | 40.0% | |
| TCAAGTCTGGAGAAGATACA+CGG | + | chr7.4:32043952-32043971 | None:intergenic | 40.0% | |
| TCGAGTAGATGAAGATGAAG+CGG | - | chr7.4:32042514-32042533 | MS.gene87061:CDS | 40.0% | |
| TTAAGACTGCAAGTGGCAAA+AGG | - | chr7.4:32044166-32044185 | MS.gene87061:intron | 40.0% | |
| ! | ACTATTTCTCCATGCACCAT+CGG | + | chr7.4:32044936-32044955 | None:intergenic | 40.0% |
| ! | ATCGGTTCTTCAAACTCTTC+TGG | + | chr7.4:32044918-32044937 | None:intergenic | 40.0% |
| ! | GTGTCATTAGGTCATATGCT+TGG | - | chr7.4:32044975-32044994 | MS.gene87061:CDS | 40.0% |
| ! | GTGTGATTAATTGGTGGCTT+TGG | - | chr7.4:32042802-32042821 | MS.gene87061:CDS | 40.0% |
| ! | TCAGTTTGCTCGTCAAACAA+TGG | + | chr7.4:32045017-32045036 | None:intergenic | 40.0% |
| ! | TGCCAGATTTTCATGACAGT+TGG | + | chr7.4:32043547-32043566 | None:intergenic | 40.0% |
| ! | TTTTACAAGACACCCTTTGG+TGG | + | chr7.4:32042012-32042031 | None:intergenic | 40.0% |
| !! | AAACAGCAGAAGGTGTCATT+AGG | - | chr7.4:32044963-32044982 | MS.gene87061:CDS | 40.0% |
| !! | GATAGAGTCGGCTTTAAAAC+AGG | + | chr7.4:32044861-32044880 | None:intergenic | 40.0% |
| !! | TTGAAGAGGCTTTAAGGAAG+TGG | - | chr7.4:32044700-32044719 | MS.gene87061:intron | 40.0% |
| !!! | GGCATGCGTGTTTTAAAATG+AGG | - | chr7.4:32042591-32042610 | MS.gene87061:CDS | 40.0% |
| AACGCATTGTCTAGCCATGA+GGG | - | chr7.4:32044418-32044437 | MS.gene87061:intron | 45.0% | |
| ACTCTGGTCCATCTGATCAT+AGG | - | chr7.4:32044778-32044797 | MS.gene87061:intron | 45.0% | |
| AGAAGCTCTACAAAGGGTAG+AGG | - | chr7.4:32044660-32044679 | MS.gene87061:intron | 45.0% | |
| AGTCTCGATGAAACAGCAGA+AGG | - | chr7.4:32044953-32044972 | MS.gene87061:intron | 45.0% | |
| CAAGTCTGGAGAAGATACAC+GGG | + | chr7.4:32043951-32043970 | None:intergenic | 45.0% | |
| CAGATAGAGGGAAGTTGAAG+AGG | - | chr7.4:32044686-32044705 | MS.gene87061:intron | 45.0% | |
| CCACATAGAAGAGCTTGACA+AGG | - | chr7.4:32043658-32043677 | MS.gene87061:intron | 45.0% | |
| CCCTTGAAGAAGCTCTACAA+AGG | - | chr7.4:32044653-32044672 | MS.gene87061:intron | 45.0% | |
| CCCTTTGTAGAGCTTCTTCA+AGG | + | chr7.4:32044657-32044676 | None:intergenic | 45.0% | |
| CCTTGTCAAGCTCTTCTATG+TGG | + | chr7.4:32043661-32043680 | None:intergenic | 45.0% | |
| CGACAACGTCTTACACATTC+CGG | + | chr7.4:32042985-32043004 | None:intergenic | 45.0% | |
| GCTTGACAAGGAGAAACTAG+AGG | - | chr7.4:32043670-32043689 | MS.gene87061:intron | 45.0% | |
| GGGAAGTTGAAGAGGCTTTA+AGG | - | chr7.4:32044694-32044713 | MS.gene87061:intron | 45.0% | |
| TAACGCATTGTCTAGCCATG+AGG | - | chr7.4:32044417-32044436 | MS.gene87061:intron | 45.0% | |
| TCTAACTCGTAAAGCTCGAG+AGG | - | chr7.4:32044504-32044523 | MS.gene87061:intron | 45.0% | |
| TGAGGTTCTTCAACCCATGA+AGG | - | chr7.4:32043910-32043929 | MS.gene87061:intron | 45.0% | |
| TGCCGCAACCAACCTAATTT+CGG | + | chr7.4:32044344-32044363 | None:intergenic | 45.0% | |
| TTAAGGAAGTGGCGATCTGA+CGG | - | chr7.4:32044711-32044730 | MS.gene87061:intron | 45.0% | |
| TTTGAAGAACCGATGGTGCA+TGG | - | chr7.4:32044924-32044943 | MS.gene87061:intron | 45.0% | |
| ! | ACTCCATCGATTGAGTTCAG+AGG | - | chr7.4:32044225-32044244 | MS.gene87061:intron | 45.0% |
| ! | ATGGGTTGAAGAACCTCAGA+CGG | + | chr7.4:32043908-32043927 | None:intergenic | 45.0% |
| ! | TGCCACTTGCAGTCTTAATC+TGG | + | chr7.4:32044164-32044183 | None:intergenic | 45.0% |
| !! | AAATTAGGTTGGTTGCGGCA+AGG | - | chr7.4:32044344-32044363 | MS.gene87061:intron | 45.0% |
| !! | AGTCGGCTTTAAAACAGGCT+TGG | + | chr7.4:32044856-32044875 | None:intergenic | 45.0% |
| !! | TGCCGAAATTAGGTTGGTTG+CGG | - | chr7.4:32044339-32044358 | MS.gene87061:intron | 45.0% |
| !! | TGGTGCTGCAAACAAACAAG+AGG | + | chr7.4:32043641-32043660 | None:intergenic | 45.0% |
| !!! | AATCTAATTTTTTATATATA+TGG | + | chr7.4:32043310-32043329 | None:intergenic | 5.0% |
| AAACCAATCGAGTCCGTCTG+AGG | - | chr7.4:32043892-32043911 | MS.gene87061:intron | 50.0% | |
| ACGACGTATCAAGCTGAACC+GGG | - | chr7.4:32041613-32041632 | MS.gene87061:CDS | 50.0% | |
| CAAGGAGAAACTAGAGGAGC+AGG | - | chr7.4:32043676-32043695 | MS.gene87061:intron | 50.0% | |
| CACTTGAGAAAACCCGTGAG+AGG | - | chr7.4:32044086-32044105 | MS.gene87061:intron | 50.0% | |
| GACGACGTATCAAGCTGAAC+CGG | - | chr7.4:32041612-32041631 | MS.gene87061:CDS | 50.0% | |
| GGCGATCTGACGGTCAAAAA+AGG | - | chr7.4:32044721-32044740 | MS.gene87061:intron | 50.0% | |
| GGTTGCGGCAAGGAAAATGA+AGG | - | chr7.4:32044354-32044373 | MS.gene87061:intron | 50.0% | |
| TAGATGAAGATGAAGCGGCC+AGG | - | chr7.4:32042519-32042538 | MS.gene87061:CDS | 50.0% | |
| TCTGGAGAAGATACACGGGA+AGG | + | chr7.4:32043947-32043966 | None:intergenic | 50.0% | |
| TTCTTCAAGGGCCTTCTTGC+AGG | + | chr7.4:32044644-32044663 | None:intergenic | 50.0% | |
| ACTCGTCTGGTGTACCCTCA+TGG | + | chr7.4:32044435-32044454 | None:intergenic | 55.0% | |
| AGGGTAGAGGCTGCAGATAG+AGG | - | chr7.4:32044673-32044692 | MS.gene87061:intron | 55.0% | |
| AGTAGCCAACACCACCGAAG+CGG | + | chr7.4:32041726-32041745 | None:intergenic | 55.0% | |
| CGCTTCTGCATACACTCGTC+TGG | + | chr7.4:32044448-32044467 | None:intergenic | 55.0% | |
| CGGCCTCTGAACTCAATCGA+TGG | + | chr7.4:32044231-32044250 | None:intergenic | 55.0% | |
| GAAGCTGTTAACCGCTTCGG+TGG | - | chr7.4:32041712-32041731 | MS.gene87061:CDS | 55.0% | |
| GGGTAGAGGCTGCAGATAGA+GGG | - | chr7.4:32044674-32044693 | MS.gene87061:intron | 55.0% | |
| GTTAACCGCTTCGGTGGTGT+TGG | - | chr7.4:32041718-32041737 | MS.gene87061:CDS | 55.0% | |
| TCGTAAAGCTCGAGAGGCAG+AGG | - | chr7.4:32044510-32044529 | MS.gene87061:intron | 55.0% | |
| ! | GAACCTCAGACGGACTCGAT+TGG | + | chr7.4:32043898-32043917 | None:intergenic | 55.0% |
| !! | GTGGCAAAAGGTGCTGCTTC+TGG | - | chr7.4:32044178-32044197 | MS.gene87061:intron | 55.0% |
| ! | AGAGGAGCAGGCAAGAGCGT+TGG | - | chr7.4:32043688-32043707 | MS.gene87061:intron | 60.0% |
| ! | CGAGTGTATGCAGAAGCGCG+AGG | - | chr7.4:32044450-32044469 | MS.gene87061:intron | 60.0% |
| !! | GCTTCGGTGGTGTTGGCTAC+TGG | - | chr7.4:32041725-32041744 | MS.gene87061:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 32041589 | 32045160 | 32041589 | ID=MS.gene87061 |
| chr7.4 | mRNA | 32041589 | 32045160 | 32041589 | ID=MS.gene87061.t1;Parent=MS.gene87061 |
| chr7.4 | exon | 32044960 | 32045160 | 32044960 | ID=MS.gene87061.t1.exon1;Parent=MS.gene87061.t1 |
| chr7.4 | CDS | 32044960 | 32045160 | 32044960 | ID=cds.MS.gene87061.t1;Parent=MS.gene87061.t1 |
| chr7.4 | exon | 32042051 | 32043093 | 32042051 | ID=MS.gene87061.t1.exon2;Parent=MS.gene87061.t1 |
| chr7.4 | CDS | 32042051 | 32043093 | 32042051 | ID=cds.MS.gene87061.t1;Parent=MS.gene87061.t1 |
| chr7.4 | exon | 32041589 | 32041949 | 32041589 | ID=MS.gene87061.t1.exon3;Parent=MS.gene87061.t1 |
| chr7.4 | CDS | 32041589 | 32041949 | 32041589 | ID=cds.MS.gene87061.t1;Parent=MS.gene87061.t1 |
| Gene Sequence |
| Protein sequence |
