AlfalfaGEDB | MS.gene061177

M. sativa cultivar XinJiangDaYe / MS.gene061177

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061177.t1	XP_003609737.1	95.5	176	8	0	1	176	201	376	1.40E-94	355.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061177.t1	A0A1C9CX66	40.4	171	100	2	3	172	221	390	8.4e-32	138.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061177.t1	G7JMR9	95.5	176	8	0	1	176	201	376	1.0e-94	355.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049341	MS.gene061177	0.807328	5.33E-50	-1.69E-46
MS.gene049821	MS.gene061177	0.815501	8.95E-52	-1.69E-46
MS.gene050020	MS.gene061177	0.86676	2.25E-65	-1.69E-46
MS.gene050807	MS.gene061177	0.831684	1.45E-55	-1.69E-46
MS.gene050901	MS.gene061177	0.821027	5.02E-53	-1.69E-46
MS.gene051719	MS.gene061177	0.826094	3.28E-54	-1.69E-46
MS.gene051720	MS.gene061177	0.836355	9.83E-57	-1.69E-46
MS.gene052133	MS.gene061177	0.821515	3.88E-53	-1.69E-46
MS.gene052879	MS.gene061177	0.827412	1.59E-54	-1.69E-46
MS.gene052880	MS.gene061177	0.820966	5.19E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061177.t1	MTR_4g121590	95.455	176	8	0	1	176	201	376	7.03e-126	358
MS.gene061177.t1	MTR_4g121570	77.714	175	39	0	1	175	201	375	9.81e-103	300
MS.gene061177.t1	MTR_4g073090	78.409	176	38	0	1	176	201	376	3.12e-102	299
MS.gene061177.t1	MTR_3g013890	40.805	174	87	3	7	172	225	390	4.31e-42	145
MS.gene061177.t1	MTR_3g102730	40.805	174	87	3	7	172	225	390	4.70e-42	145
MS.gene061177.t1	MTR_3g102760	40.116	172	101	2	2	172	220	390	9.38e-41	141
MS.gene061177.t1	MTR_1g018610	40.351	171	101	1	2	172	254	423	1.10e-40	142
MS.gene061177.t1	MTR_1g018580	39.766	171	102	1	2	172	195	364	5.54e-40	139
MS.gene061177.t1	MTR_3g102770	39.759	166	99	1	7	172	225	389	1.09e-39	139
MS.gene061177.t1	MTR_1g018590	39.181	171	103	1	2	172	225	394	1.59e-39	138

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061177.t1	AT4G24220	35.673	171	109	1	2	172	219	388	3.05e-36	129
MS.gene061177.t1	AT4G24220	35.673	171	109	1	2	172	218	387	3.82e-36	129
MS.gene061177.t1	AT5G58750	32.571	175	114	3	3	173	204	378	1.53e-23	95.9
MS.gene061177.t1	AT5G58750	32.571	175	114	3	3	173	212	386	1.64e-23	95.9

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Find 0 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTTTAATAGTGTGAAATTC+TGG	-	32463:12517-12536	MS.gene061177:CDS	30.0%
TGAAAAGGAAGAGTTTGATT+TGG	-	32463:12311-12330	MS.gene061177:CDS	30.0%
TGAAACTCAAATCGAAAAAC+TGG	+	32463:12441-12460	MS.gene061177:intergenic	30.0%
CAAGCGTTTAATTGCACAAA+TGG	-	32463:12216-12235	MS.gene061177:CDS	35.0%
CATTTGTGCAATTAAACGCT+TGG	+	32463:12218-12237	MS.gene061177:intergenic	35.0%
CTATTTCCTGGATAACGAAA+CGG	+	32463:12105-12124	MS.gene061177:intergenic	35.0%
TGGACTTCATAAGACCAAAT+TGG	-	32463:12386-12405	MS.gene061177:CDS	35.0%
AAATCGAAAAACTGGCACCA+AGG	+	32463:12433-12452	MS.gene061176:intergenic	40.0%
CGTTTCGTTATCCAGGAAAT+AGG	-	32463:12103-12122	MS.gene061177:CDS	40.0%
GTGCAGTTTATGCGTGATAA+GGG	-	32463:12333-12352	MS.gene061177:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
32463	gene	12057	12587	12057	ID=MS.gene061177
32463	mRNA	12057	12587	12057	ID=MS.gene061177.t1;Parent=MS.gene061177
32463	exon	12057	12587	12057	ID=MS.gene061177.t1.exon1;Parent=MS.gene061177.t1
32463	CDS	12057	12587	12057	ID=cds.MS.gene061177.t1;Parent=MS.gene061177.t1

Gene Sequence

>MS.gene061177

ATGGTACTAGCGACATGCGCTGCCATATGTCGCCAGGTAGGATTACCGTTTCGTTATCCAGGAAATAGGTACACTTTGGAGCATTTCTGCGATATGACGGATGCTCGTGTGCTCGCAAAGCAGCATGTGTGGGCTGCAGTTACAAAGAAGGCCAAGAACCAAGCGTTTAATTGCACAAATGGTGACGTTTTCACATGGAAGAGTATGTGGAAGGTGCTTTGTAAGACTTTTGCTGTTAAGTTTGTGGAGTTGGATGAAAAGGAAGAGTTTGATTTGGTGCAGTTTATGCGTGATAAGGGTGAGATTTGGGATCAGATTGTGGAGGAGTATGGACTTCATAAGACCAAATTGGAGAAAATTGCTTGTTTTGAAGCCTTGGTGCCAGTTTTTCGATTTGAGTTTCAACTTGTATCTAGTATGAATAAGAGTAAAAATTATGAGTTTTTTGAGTATGCTGAGACGTTTAATAGTGTGAAATTCTGGGTGATGAAGCTGAGGGAGATGAATCTCATACCCATCTACGAACATTGA

Protein sequence

>MS.gene061177.t1

MVLATCAAICRQVGLPFRYPGNRYTLEHFCDMTDARVLAKQHVWAAVTKKAKNQAFNCTNGDVFTWKSMWKVLCKTFAVKFVELDEKEEFDLVQFMRDKGEIWDQIVEEYGLHKTKLEKIACFEALVPVFRFEFQLVSSMNKSKNYEFFEYAETFNSVKFWVMKLREMNLIPIYEH