AlfalfaGEDB | MS.gene061177

M. sativa cultivar XinJiangDaYe / MS.gene061177

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061177.t1	XP_003609737.1	95.5	176	8	0	1	176	201	376	1.40E-94	355.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061177.t1	A0A1C9CX66	40.4	171	100	2	3	172	221	390	8.4e-32	138.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061177.t1	G7JMR9	95.5	176	8	0	1	176	201	376	1.0e-94	355.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049341	MS.gene061177	0.807328	5.33E-50	-1.69E-46
MS.gene049821	MS.gene061177	0.815501	8.95E-52	-1.69E-46
MS.gene050020	MS.gene061177	0.86676	2.25E-65	-1.69E-46
MS.gene050807	MS.gene061177	0.831684	1.45E-55	-1.69E-46
MS.gene050901	MS.gene061177	0.821027	5.02E-53	-1.69E-46
MS.gene051719	MS.gene061177	0.826094	3.28E-54	-1.69E-46
MS.gene051720	MS.gene061177	0.836355	9.83E-57	-1.69E-46
MS.gene052133	MS.gene061177	0.821515	3.88E-53	-1.69E-46
MS.gene052879	MS.gene061177	0.827412	1.59E-54	-1.69E-46
MS.gene052880	MS.gene061177	0.820966	5.19E-53	-1.69E-46
MS.gene053563	MS.gene061177	0.808964	2.39E-50	-1.69E-46
MS.gene055466	MS.gene061177	0.812004	5.27E-51	-1.69E-46
MS.gene055890	MS.gene061177	0.806174	9.35E-50	-1.69E-46
MS.gene055912	MS.gene061177	0.819917	9.03E-53	-1.69E-46
MS.gene057705	MS.gene061177	0.811898	5.56E-51	-1.69E-46
MS.gene060429	MS.gene061177	0.812416	4.29E-51	-1.69E-46
MS.gene060519	MS.gene061177	0.830171	3.41E-55	-1.69E-46
MS.gene060587	MS.gene061177	0.813627	2.33E-51	-1.69E-46
MS.gene061176	MS.gene061177	0.999751	0.00E+00	-1.69E-46
MS.gene061177	MS.gene061178	0.999776	0.00E+00	-1.69E-46
MS.gene061177	MS.gene061866	0.839901	1.20E-57	-1.69E-46
MS.gene061177	MS.gene061869	0.849742	2.66E-60	-1.69E-46
MS.gene061177	MS.gene061872	0.852003	6.14E-61	-1.69E-46
MS.gene061177	MS.gene061874	0.848147	7.38E-60	-1.69E-46
MS.gene061177	MS.gene061893	0.802297	6.00E-49	-1.69E-46
MS.gene061177	MS.gene061947	0.868734	5.24E-66	-1.69E-46
MS.gene061177	MS.gene062743	0.822779	1.97E-53	-1.69E-46
MS.gene061177	MS.gene062821	0.823894	1.08E-53	-1.69E-46
MS.gene061177	MS.gene063452	0.825699	4.06E-54	-1.69E-46
MS.gene061177	MS.gene06371	0.80403	2.63E-49	-1.69E-46
MS.gene061177	MS.gene064944	0.827613	1.42E-54	-1.69E-46
MS.gene061177	MS.gene065667	0.844062	9.54E-59	-1.69E-46
MS.gene061177	MS.gene066105	0.833712	4.56E-56	-1.69E-46
MS.gene061177	MS.gene067521	0.80629	8.84E-50	-1.69E-46
MS.gene061177	MS.gene067802	0.804422	2.18E-49	-1.69E-46
MS.gene061177	MS.gene068659	0.816109	6.55E-52	-1.69E-46
MS.gene061177	MS.gene070242	0.814083	1.85E-51	-1.69E-46
MS.gene061177	MS.gene070787	0.811236	7.75E-51	-1.69E-46
MS.gene061177	MS.gene070943	0.839042	2.01E-57	-1.69E-46
MS.gene061177	MS.gene071315	0.826886	2.12E-54	-1.69E-46
MS.gene061177	MS.gene071316	0.822309	2.54E-53	-1.69E-46
MS.gene061177	MS.gene07147	0.816832	4.51E-52	-1.69E-46
MS.gene061177	MS.gene072340	0.821639	3.63E-53	-1.69E-46
MS.gene061177	MS.gene072493	0.814295	1.66E-51	-1.69E-46
MS.gene061177	MS.gene073785	0.801628	8.23E-49	-1.69E-46
MS.gene061177	MS.gene074258	0.80839	3.17E-50	-1.69E-46
MS.gene061177	MS.gene074616	0.80324	3.83E-49	-1.69E-46
MS.gene061177	MS.gene074617	0.800325	1.52E-48	-1.69E-46
MS.gene061177	MS.gene09873	0.831998	1.21E-55	-1.69E-46
MS.gene061177	MS.gene21960	0.812039	5.18E-51	-1.69E-46
MS.gene061177	MS.gene23105	0.830244	3.27E-55	-1.69E-46
MS.gene061177	MS.gene23112	0.821105	4.82E-53	-1.69E-46
MS.gene061177	MS.gene23988	0.806958	6.39E-50	-1.69E-46
MS.gene061177	MS.gene24610	0.832894	7.29E-56	-1.69E-46
MS.gene061177	MS.gene25092	0.817978	2.49E-52	-1.69E-46
MS.gene061177	MS.gene25435	0.831834	1.33E-55	-1.69E-46
MS.gene061177	MS.gene25436	0.829934	3.90E-55	-1.69E-46
MS.gene061177	MS.gene25673	0.807951	3.93E-50	-1.69E-46
MS.gene061177	MS.gene26875	0.805211	1.49E-49	-1.69E-46
MS.gene061177	MS.gene27569	0.807652	4.55E-50	-1.69E-46
MS.gene061177	MS.gene29576	0.820371	7.11E-53	-1.69E-46
MS.gene061177	MS.gene29807	0.817409	3.35E-52	-1.69E-46
MS.gene061177	MS.gene29880	0.822556	2.22E-53	-1.69E-46
MS.gene061177	MS.gene29954	0.800267	1.56E-48	-1.69E-46
MS.gene061177	MS.gene30946	0.822567	2.21E-53	-1.69E-46
MS.gene061177	MS.gene31169	0.803759	2.99E-49	-1.69E-46
MS.gene061177	MS.gene31321	0.802667	5.03E-49	-1.69E-46
MS.gene061177	MS.gene34369	0.815832	7.55E-52	-1.69E-46
MS.gene061177	MS.gene34718	0.802739	4.86E-49	-1.69E-46
MS.gene061177	MS.gene35048	0.803084	4.13E-49	-1.69E-46
MS.gene061177	MS.gene35575	0.808871	2.50E-50	-1.69E-46
MS.gene061177	MS.gene36496	0.830295	3.18E-55	-1.69E-46
MS.gene061177	MS.gene38844	0.804141	2.49E-49	-1.69E-46
MS.gene061177	MS.gene40595	0.828854	7.13E-55	-1.69E-46
MS.gene061177	MS.gene42158	0.803278	3.76E-49	-1.69E-46
MS.gene061177	MS.gene43178	0.820872	5.45E-53	-1.69E-46
MS.gene061177	MS.gene45478	0.804175	2.45E-49	-1.69E-46
MS.gene061177	MS.gene45479	0.818937	1.51E-52	-1.69E-46
MS.gene061177	MS.gene47338	0.81024	1.27E-50	-1.69E-46
MS.gene061177	MS.gene47339	0.808251	3.39E-50	-1.69E-46
MS.gene061177	MS.gene47340	0.810172	1.32E-50	-1.69E-46
MS.gene061177	MS.gene47689	0.818038	2.41E-52	-1.69E-46
MS.gene061177	MS.gene47691	0.801368	9.30E-49	-1.69E-46
MS.gene061177	MS.gene49359	0.804849	1.77E-49	-1.69E-46
MS.gene061177	MS.gene49634	0.80388	2.82E-49	-1.69E-46
MS.gene061177	MS.gene50564	0.812668	3.78E-51	-1.69E-46
MS.gene061177	MS.gene50775	0.816103	6.57E-52	-1.69E-46
MS.gene061177	MS.gene53244	0.83804	3.64E-57	-1.69E-46
MS.gene061177	MS.gene53586	0.836292	1.02E-56	-1.69E-46
MS.gene061177	MS.gene54530	0.838496	2.78E-57	-1.69E-46
MS.gene061177	MS.gene55887	0.807759	4.32E-50	-1.69E-46
MS.gene061177	MS.gene56067	0.807572	4.73E-50	-1.69E-46
MS.gene061177	MS.gene56414	0.811088	8.34E-51	-1.69E-46
MS.gene061177	MS.gene61133	0.807247	5.55E-50	-1.69E-46
MS.gene061177	MS.gene61727	0.965048	4.21E-124	-1.69E-46
MS.gene061177	MS.gene61729	0.970512	9.92E-132	-1.69E-46
MS.gene061177	MS.gene64101	0.853829	1.84E-61	-1.69E-46
MS.gene061177	MS.gene64249	0.840977	6.28E-58	-1.69E-46
MS.gene061177	MS.gene64650	0.813892	2.03E-51	-1.69E-46
MS.gene061177	MS.gene64677	0.809937	1.48E-50	-1.69E-46
MS.gene061177	MS.gene65271	0.800038	1.74E-48	-1.69E-46
MS.gene061177	MS.gene65276	0.820112	8.15E-53	-1.69E-46
MS.gene061177	MS.gene66280	0.80457	2.03E-49	-1.69E-46
MS.gene061177	MS.gene66973	0.804725	1.88E-49	-1.69E-46
MS.gene061177	MS.gene70398	0.802819	4.68E-49	-1.69E-46
MS.gene061177	MS.gene71151	0.822102	2.83E-53	-1.69E-46
MS.gene061177	MS.gene71215	0.829539	4.87E-55	-1.69E-46
MS.gene061177	MS.gene71704	0.838358	3.02E-57	-1.69E-46
MS.gene061177	MS.gene71771	0.80948	1.85E-50	-1.69E-46
MS.gene061177	MS.gene72121	0.822716	2.04E-53	-1.69E-46
MS.gene061177	MS.gene72123	0.818712	1.70E-52	-1.69E-46
MS.gene061177	MS.gene72203	0.810276	1.25E-50	-1.69E-46
MS.gene061177	MS.gene72268	0.842499	2.49E-58	-1.69E-46
MS.gene061177	MS.gene73243	0.837114	6.29E-57	-1.69E-46
MS.gene061177	MS.gene76034	0.815475	9.07E-52	-1.69E-46
MS.gene061177	MS.gene76967	0.805596	1.24E-49	-1.69E-46
MS.gene061177	MS.gene78578	0.817216	3.70E-52	-1.69E-46
MS.gene061177	MS.gene78729	0.807179	5.74E-50	-1.69E-46
MS.gene061177	MS.gene78880	0.804039	2.62E-49	-1.69E-46
MS.gene061177	MS.gene79673	0.824273	8.83E-54	-1.69E-46
MS.gene061177	MS.gene80257	0.816755	4.70E-52	-1.69E-46
MS.gene061177	MS.gene83996	0.822154	2.76E-53	-1.69E-46
MS.gene061177	MS.gene84426	0.841934	3.51E-58	-1.69E-46
MS.gene061177	MS.gene84973	0.810125	1.35E-50	-1.69E-46
MS.gene061177	MS.gene85561	0.805348	1.39E-49	-1.69E-46
MS.gene061177	MS.gene87061	0.802256	6.12E-49	-1.69E-46
MS.gene061177	MS.gene87746	0.808636	2.81E-50	-1.69E-46
MS.gene061177	MS.gene88243	0.821015	5.05E-53	-1.69E-46
MS.gene061177	MS.gene88304	0.803196	3.91E-49	-1.69E-46
MS.gene061177	MS.gene88680	0.825722	4.02E-54	-1.69E-46
MS.gene061177	MS.gene89552	0.805761	1.14E-49	-1.69E-46
MS.gene061177	MS.gene89562	0.814453	1.53E-51	-1.69E-46
MS.gene061177	MS.gene90649	0.835194	1.93E-56	-1.69E-46
MS.gene061177	MS.gene90981	0.814079	1.85E-51	-1.69E-46
MS.gene061177	MS.gene91933	0.802864	4.58E-49	-1.69E-46
MS.gene061177	MS.gene93206	0.822121	2.81E-53	-1.69E-46
MS.gene061177	MS.gene95438	0.824814	6.58E-54	-1.69E-46
MS.gene061177	MS.gene95800	0.801566	8.48E-49	-1.69E-46
MS.gene061177	MS.gene96949	0.809782	1.60E-50	-1.69E-46
MS.gene061177	MS.gene97306	0.846269	2.41E-59	-1.69E-46
MS.gene061177	MS.gene97761	0.81506	1.12E-51	-1.69E-46
MS.gene061177	MS.gene97762	0.826771	2.26E-54	-1.69E-46
MS.gene061177	MS.gene99595	0.824479	7.89E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061177.t1	MTR_4g121590	95.455	176	8	0	1	176	201	376	7.03e-126	358
MS.gene061177.t1	MTR_4g121570	77.714	175	39	0	1	175	201	375	9.81e-103	300
MS.gene061177.t1	MTR_4g073090	78.409	176	38	0	1	176	201	376	3.12e-102	299
MS.gene061177.t1	MTR_3g013890	40.805	174	87	3	7	172	225	390	4.31e-42	145
MS.gene061177.t1	MTR_3g102730	40.805	174	87	3	7	172	225	390	4.70e-42	145
MS.gene061177.t1	MTR_3g102760	40.116	172	101	2	2	172	220	390	9.38e-41	141
MS.gene061177.t1	MTR_1g018610	40.351	171	101	1	2	172	254	423	1.10e-40	142
MS.gene061177.t1	MTR_1g018580	39.766	171	102	1	2	172	195	364	5.54e-40	139
MS.gene061177.t1	MTR_3g102770	39.759	166	99	1	7	172	225	389	1.09e-39	139
MS.gene061177.t1	MTR_1g018590	39.181	171	103	1	2	172	225	394	1.59e-39	138
MS.gene061177.t1	MTR_3g463660	35.429	175	107	3	3	172	202	375	6.65e-30	112

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061177.t1	AT4G24220	35.673	171	109	1	2	172	219	388	3.05e-36	129
MS.gene061177.t1	AT4G24220	35.673	171	109	1	2	172	218	387	3.82e-36	129
MS.gene061177.t1	AT5G58750	32.571	175	114	3	3	173	204	378	1.53e-23	95.9
MS.gene061177.t1	AT5G58750	32.571	175	114	3	3	173	212	386	1.64e-23	95.9

Find 0 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	GTTTAATAGTGTGAAATTCT+GGG	-	32463:12518-12537	MS.gene061177:CDS	25.0%
	CGTTTAATAGTGTGAAATTC+TGG	-	32463:12517-12536	MS.gene061177:CDS	30.0%
	TGAAAAGGAAGAGTTTGATT+TGG	-	32463:12311-12330	MS.gene061177:CDS	30.0%
	TGAAACTCAAATCGAAAAAC+TGG	+	32463:12441-12460	MS.gene061177:intergenic	30.0%
!	ACAAGCAATTTTCTCCAATT+TGG	+	32463:12403-12422	MS.gene061177:intergenic	30.0%
	CAAGCGTTTAATTGCACAAA+TGG	-	32463:12216-12235	MS.gene061177:CDS	35.0%
	CATTTGTGCAATTAAACGCT+TGG	+	32463:12218-12237	MS.gene061177:intergenic	35.0%
	CTATTTCCTGGATAACGAAA+CGG	+	32463:12105-12124	MS.gene061177:intergenic	35.0%
	TGGACTTCATAAGACCAAAT+TGG	-	32463:12386-12405	MS.gene061177:CDS	35.0%
!!	TTTTCACATGGAAGAGTATG+TGG	-	32463:12244-12263	MS.gene061177:CDS	35.0%
!!!	AATTGCTTGTTTTGAAGCCT+TGG	-	32463:12413-12432	MS.gene061177:CDS	35.0%
!!!	GACTTTTGCTGTTAAGTTTG+TGG	-	32463:12281-12300	MS.gene061177:CDS	35.0%
	AAATCGAAAAACTGGCACCA+AGG	+	32463:12433-12452	MS.gene061176:intergenic	40.0%
	CGTTTCGTTATCCAGGAAAT+AGG	-	32463:12103-12122	MS.gene061177:CDS	40.0%
	GTGCAGTTTATGCGTGATAA+GGG	-	32463:12333-12352	MS.gene061177:CDS	40.0%
	GTTTGTGGAGTTGGATGAAA+AGG	-	32463:12296-12315	MS.gene061177:CDS	40.0%
	TCCAAAGTGTACCTATTTCC+TGG	+	32463:12117-12136	MS.gene061177:intergenic	40.0%
	TCCAGGAAATAGGTACACTT+TGG	-	32463:12113-12132	MS.gene061177:CDS	40.0%
	TGCTGTTAAGTTTGTGGAGT+TGG	-	32463:12287-12306	MS.gene061177:CDS	40.0%
!	GCAATTAAACGCTTGGTTCT+TGG	+	32463:12211-12230	MS.gene061177:intergenic	40.0%
!	TGAGATTTGGGATCAGATTG+TGG	-	32463:12356-12375	MS.gene061177:CDS	40.0%
!!	CAAATGGTGACGTTTTCACA+TGG	-	32463:12232-12251	MS.gene061177:CDS	40.0%
	AACGAAACGGTAATCCTACC+TGG	+	32463:12092-12111	MS.gene061176:intergenic	45.0%
	AATTCTGGGTGATGAAGCTG+AGG	-	32463:12532-12551	MS.gene061177:CDS	45.0%
	ATTCTGGGTGATGAAGCTGA+GGG	-	32463:12533-12552	MS.gene061177:CDS	45.0%
	GATCAGATTGTGGAGGAGTA+TGG	-	32463:12366-12385	MS.gene061177:CDS	45.0%
	GCGTGATAAGGGTGAGATTT+GGG	-	32463:12344-12363	MS.gene061177:CDS	45.0%
	GGATTACCGTTTCGTTATCC+AGG	-	32463:12096-12115	MS.gene061177:CDS	45.0%
	GGTGCAGTTTATGCGTGATA+AGG	-	32463:12332-12351	MS.gene061177:CDS	45.0%
	TAATCCTACCTGGCGACATA+TGG	+	32463:12082-12101	MS.gene061177:intergenic	45.0%
	TGCGTGATAAGGGTGAGATT+TGG	-	32463:12343-12362	MS.gene061177:CDS	45.0%
!	CACATGGAAGAGTATGTGGA+AGG	-	32463:12248-12267	MS.gene061177:CDS	45.0%
!	GATTTGGGATCAGATTGTGG+AGG	-	32463:12359-12378	MS.gene061177:CDS	45.0%
!	GGAGCATTTCTGCGATATGA+CGG	-	32463:12134-12153	MS.gene061177:CDS	45.0%
!	GTGGGCTGCAGTTACAAAGA+AGG	-	32463:12185-12204	MS.gene061177:CDS	50.0%
	GCTCGCAAAGCAGCATGTGT+GGG	-	32463:12167-12186	MS.gene061177:CDS	55.0%
	TGCTCGCAAAGCAGCATGTG+TGG	-	32463:12166-12185	MS.gene061177:CDS	55.0%
	ATGCGCTGCCATATGTCGCC+AGG	-	32463:12071-12090	MS.gene061177:CDS	60.0%
	GCTGCCATATGTCGCCAGGT+AGG	-	32463:12075-12094	MS.gene061177:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
32463	gene	12057	12587	12057	ID=MS.gene061177
32463	mRNA	12057	12587	12057	ID=MS.gene061177.t1;Parent=MS.gene061177
32463	exon	12057	12587	12057	ID=MS.gene061177.t1.exon1;Parent=MS.gene061177.t1
32463	CDS	12057	12587	12057	ID=cds.MS.gene061177.t1;Parent=MS.gene061177.t1

Gene Sequence

>MS.gene061177

ATGGTACTAGCGACATGCGCTGCCATATGTCGCCAGGTAGGATTACCGTTTCGTTATCCAGGAAATAGGTACACTTTGGAGCATTTCTGCGATATGACGGATGCTCGTGTGCTCGCAAAGCAGCATGTGTGGGCTGCAGTTACAAAGAAGGCCAAGAACCAAGCGTTTAATTGCACAAATGGTGACGTTTTCACATGGAAGAGTATGTGGAAGGTGCTTTGTAAGACTTTTGCTGTTAAGTTTGTGGAGTTGGATGAAAAGGAAGAGTTTGATTTGGTGCAGTTTATGCGTGATAAGGGTGAGATTTGGGATCAGATTGTGGAGGAGTATGGACTTCATAAGACCAAATTGGAGAAAATTGCTTGTTTTGAAGCCTTGGTGCCAGTTTTTCGATTTGAGTTTCAACTTGTATCTAGTATGAATAAGAGTAAAAATTATGAGTTTTTTGAGTATGCTGAGACGTTTAATAGTGTGAAATTCTGGGTGATGAAGCTGAGGGAGATGAATCTCATACCCATCTACGAACATTGA

Protein sequence

>MS.gene061177.t1

MVLATCAAICRQVGLPFRYPGNRYTLEHFCDMTDARVLAKQHVWAAVTKKAKNQAFNCTNGDVFTWKSMWKVLCKTFAVKFVELDEKEEFDLVQFMRDKGEIWDQIVEEYGLHKTKLEKIACFEALVPVFRFEFQLVSSMNKSKNYEFFEYAETFNSVKFWVMKLREMNLIPIYEH