AlfalfaGEDB | MS.gene061176

M. sativa cultivar XinJiangDaYe / MS.gene061176

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061176.t1	XP_003609737.1	95.5	176	8	0	1	176	201	376	1.40E-94	355.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061176.t1	A0A1C9CX66	40.4	171	100	2	3	172	221	390	8.4e-32	138.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061176.t1	G7JMR9	95.5	176	8	0	1	176	201	376	1.0e-94	355.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049341	MS.gene061176	0.80814	3.59E-50	-1.69E-46
MS.gene049821	MS.gene061176	0.815381	9.52E-52	-1.69E-46
MS.gene050020	MS.gene061176	0.867265	1.55E-65	-1.69E-46
MS.gene050807	MS.gene061176	0.832041	1.19E-55	-1.69E-46
MS.gene050901	MS.gene061176	0.8207	5.97E-53	-1.69E-46
MS.gene051719	MS.gene061176	0.826618	2.46E-54	-1.69E-46
MS.gene051720	MS.gene061176	0.83694	6.97E-57	-1.69E-46
MS.gene052133	MS.gene061176	0.821309	4.32E-53	-1.69E-46
MS.gene052879	MS.gene061176	0.827843	1.25E-54	-1.69E-46
MS.gene052880	MS.gene061176	0.82123	4.51E-53	-1.69E-46
MS.gene053563	MS.gene061176	0.808547	2.94E-50	-1.69E-46
MS.gene055466	MS.gene061176	0.812123	4.97E-51	-1.69E-46
MS.gene055890	MS.gene061176	0.808623	2.83E-50	-1.69E-46
MS.gene055912	MS.gene061176	0.821341	4.25E-53	-1.69E-46
MS.gene057705	MS.gene061176	0.810835	9.46E-51	-1.69E-46
MS.gene060429	MS.gene061176	0.812803	3.53E-51	-1.69E-46
MS.gene060519	MS.gene061176	0.829425	5.19E-55	-1.69E-46
MS.gene060587	MS.gene061176	0.814204	1.74E-51	-1.69E-46
MS.gene061176	MS.gene061177	0.999751	0.00E+00	-1.69E-46
MS.gene061176	MS.gene061178	0.999964	0.00E+00	-1.69E-46
MS.gene061176	MS.gene061866	0.83952	1.51E-57	-1.69E-46
MS.gene061176	MS.gene061869	0.849218	3.72E-60	-1.69E-46
MS.gene061176	MS.gene061872	0.851564	8.18E-61	-1.69E-46
MS.gene061176	MS.gene061874	0.84796	8.31E-60	-1.69E-46
MS.gene061176	MS.gene061893	0.80298	4.34E-49	-1.69E-46
MS.gene061176	MS.gene061947	0.869376	3.24E-66	-1.69E-46
MS.gene061176	MS.gene06236	0.800066	1.72E-48	-1.69E-46
MS.gene061176	MS.gene062743	0.822752	2.00E-53	-1.69E-46
MS.gene061176	MS.gene062821	0.825228	5.25E-54	-1.69E-46
MS.gene061176	MS.gene063452	0.826921	2.08E-54	-1.69E-46
MS.gene061176	MS.gene06371	0.804473	2.12E-49	-1.69E-46
MS.gene061176	MS.gene064944	0.828456	8.90E-55	-1.69E-46
MS.gene061176	MS.gene065667	0.84579	3.26E-59	-1.69E-46
MS.gene061176	MS.gene066105	0.833599	4.86E-56	-1.69E-46
MS.gene061176	MS.gene067521	0.806772	6.99E-50	-1.69E-46
MS.gene061176	MS.gene067802	0.804276	2.33E-49	-1.69E-46
MS.gene061176	MS.gene068659	0.817625	2.99E-52	-1.69E-46
MS.gene061176	MS.gene070242	0.814952	1.19E-51	-1.69E-46
MS.gene061176	MS.gene070787	0.811938	5.45E-51	-1.69E-46
MS.gene061176	MS.gene070943	0.839887	1.21E-57	-1.69E-46
MS.gene061176	MS.gene071315	0.82874	7.60E-55	-1.69E-46
MS.gene061176	MS.gene071316	0.82418	9.28E-54	-1.69E-46
MS.gene061176	MS.gene07147	0.818291	2.12E-52	-1.69E-46
MS.gene061176	MS.gene072340	0.821614	3.68E-53	-1.69E-46
MS.gene061176	MS.gene072493	0.815072	1.11E-51	-1.69E-46
MS.gene061176	MS.gene073785	0.802098	6.59E-49	-1.69E-46
MS.gene061176	MS.gene074258	0.809629	1.72E-50	-1.69E-46
MS.gene061176	MS.gene074616	0.803487	3.41E-49	-1.69E-46
MS.gene061176	MS.gene074617	0.800555	1.36E-48	-1.69E-46
MS.gene061176	MS.gene09873	0.831588	1.53E-55	-1.69E-46
MS.gene061176	MS.gene21122	0.800498	1.40E-48	-1.69E-46
MS.gene061176	MS.gene21960	0.811769	5.93E-51	-1.69E-46
MS.gene061176	MS.gene23105	0.830577	2.71E-55	-1.69E-46
MS.gene061176	MS.gene23112	0.820741	5.84E-53	-1.69E-46
MS.gene061176	MS.gene23988	0.807727	4.39E-50	-1.69E-46
MS.gene061176	MS.gene24610	0.833676	4.65E-56	-1.69E-46
MS.gene061176	MS.gene25092	0.817478	3.23E-52	-1.69E-46
MS.gene061176	MS.gene25435	0.833916	4.05E-56	-1.69E-46
MS.gene061176	MS.gene25436	0.832092	1.15E-55	-1.69E-46
MS.gene061176	MS.gene25673	0.808348	3.24E-50	-1.69E-46
MS.gene061176	MS.gene26875	0.805571	1.25E-49	-1.69E-46
MS.gene061176	MS.gene27569	0.807686	4.48E-50	-1.69E-46
MS.gene061176	MS.gene29576	0.82095	5.23E-53	-1.69E-46
MS.gene061176	MS.gene29807	0.818383	2.02E-52	-1.69E-46
MS.gene061176	MS.gene29880	0.823098	1.66E-53	-1.69E-46
MS.gene061176	MS.gene29954	0.800939	1.14E-48	-1.69E-46
MS.gene061176	MS.gene30946	0.822509	2.28E-53	-1.69E-46
MS.gene061176	MS.gene31169	0.805239	1.47E-49	-1.69E-46
MS.gene061176	MS.gene31321	0.803379	3.59E-49	-1.69E-46
MS.gene061176	MS.gene34369	0.816715	4.79E-52	-1.69E-46
MS.gene061176	MS.gene34718	0.80506	1.60E-49	-1.69E-46
MS.gene061176	MS.gene35048	0.802836	4.64E-49	-1.69E-46
MS.gene061176	MS.gene35135	0.800686	1.28E-48	-1.69E-46
MS.gene061176	MS.gene35575	0.80928	2.05E-50	-1.69E-46
MS.gene061176	MS.gene36496	0.830249	3.27E-55	-1.69E-46
MS.gene061176	MS.gene38844	0.805691	1.18E-49	-1.69E-46
MS.gene061176	MS.gene40595	0.828033	1.13E-54	-1.69E-46
MS.gene061176	MS.gene42158	0.804025	2.63E-49	-1.69E-46
MS.gene061176	MS.gene43178	0.821054	4.95E-53	-1.69E-46
MS.gene061176	MS.gene45478	0.805636	1.21E-49	-1.69E-46
MS.gene061176	MS.gene45479	0.8197	1.01E-52	-1.69E-46
MS.gene061176	MS.gene47338	0.810431	1.16E-50	-1.69E-46
MS.gene061176	MS.gene47339	0.808431	3.11E-50	-1.69E-46
MS.gene061176	MS.gene47340	0.810361	1.20E-50	-1.69E-46
MS.gene061176	MS.gene47689	0.818386	2.01E-52	-1.69E-46
MS.gene061176	MS.gene47691	0.801817	7.53E-49	-1.69E-46
MS.gene061176	MS.gene49359	0.805078	1.59E-49	-1.69E-46
MS.gene061176	MS.gene49634	0.804937	1.70E-49	-1.69E-46
MS.gene061176	MS.gene50564	0.812778	3.57E-51	-1.69E-46
MS.gene061176	MS.gene50775	0.816393	5.66E-52	-1.69E-46
MS.gene061176	MS.gene53244	0.838457	2.84E-57	-1.69E-46
MS.gene061176	MS.gene53586	0.837283	5.69E-57	-1.69E-46
MS.gene061176	MS.gene54530	0.83915	1.88E-57	-1.69E-46
MS.gene061176	MS.gene55887	0.809147	2.18E-50	-1.69E-46
MS.gene061176	MS.gene56067	0.80811	3.64E-50	-1.69E-46
MS.gene061176	MS.gene56414	0.812075	5.09E-51	-1.69E-46
MS.gene061176	MS.gene61133	0.808283	3.34E-50	-1.69E-46
MS.gene061176	MS.gene61727	0.96526	2.25E-124	-1.69E-46
MS.gene061176	MS.gene61729	0.970879	2.72E-132	-1.69E-46
MS.gene061176	MS.gene64101	0.854591	1.11E-61	-1.69E-46
MS.gene061176	MS.gene64249	0.841551	4.44E-58	-1.69E-46
MS.gene061176	MS.gene64650	0.814466	1.52E-51	-1.69E-46
MS.gene061176	MS.gene64677	0.810103	1.36E-50	-1.69E-46
MS.gene061176	MS.gene65271	0.800187	1.62E-48	-1.69E-46
MS.gene061176	MS.gene65276	0.821947	3.08E-53	-1.69E-46
MS.gene061176	MS.gene66280	0.805082	1.58E-49	-1.69E-46
MS.gene061176	MS.gene66973	0.803555	3.30E-49	-1.69E-46
MS.gene061176	MS.gene68220	0.801352	9.38E-49	-1.69E-46
MS.gene061176	MS.gene70398	0.802697	4.96E-49	-1.69E-46
MS.gene061176	MS.gene71151	0.822214	2.67E-53	-1.69E-46
MS.gene061176	MS.gene71215	0.829009	6.54E-55	-1.69E-46
MS.gene061176	MS.gene71704	0.839874	1.22E-57	-1.69E-46
MS.gene061176	MS.gene71771	0.810239	1.27E-50	-1.69E-46
MS.gene061176	MS.gene72121	0.82229	2.56E-53	-1.69E-46
MS.gene061176	MS.gene72123	0.818315	2.09E-52	-1.69E-46
MS.gene061176	MS.gene72203	0.810468	1.14E-50	-1.69E-46
MS.gene061176	MS.gene72268	0.843074	1.75E-58	-1.69E-46
MS.gene061176	MS.gene73243	0.83626	1.04E-56	-1.69E-46
MS.gene061176	MS.gene76034	0.815886	7.35E-52	-1.69E-46
MS.gene061176	MS.gene76967	0.806086	9.76E-50	-1.69E-46
MS.gene061176	MS.gene78578	0.817937	2.55E-52	-1.69E-46
MS.gene061176	MS.gene78729	0.807281	5.46E-50	-1.69E-46
MS.gene061176	MS.gene78880	0.805225	1.48E-49	-1.69E-46
MS.gene061176	MS.gene79673	0.825027	5.86E-54	-1.69E-46
MS.gene061176	MS.gene80257	0.81797	2.50E-52	-1.69E-46
MS.gene061176	MS.gene83996	0.822364	2.46E-53	-1.69E-46
MS.gene061176	MS.gene84426	0.842416	2.62E-58	-1.69E-46
MS.gene061176	MS.gene84973	0.811394	7.16E-51	-1.69E-46
MS.gene061176	MS.gene85561	0.80634	8.63E-50	-1.69E-46
MS.gene061176	MS.gene87061	0.80232	5.93E-49	-1.69E-46
MS.gene061176	MS.gene87746	0.809207	2.12E-50	-1.69E-46
MS.gene061176	MS.gene88243	0.821153	4.70E-53	-1.69E-46
MS.gene061176	MS.gene88304	0.804171	2.45E-49	-1.69E-46
MS.gene061176	MS.gene88680	0.826725	2.32E-54	-1.69E-46
MS.gene061176	MS.gene89552	0.805987	1.02E-49	-1.69E-46
MS.gene061176	MS.gene89562	0.814002	1.92E-51	-1.69E-46
MS.gene061176	MS.gene90649	0.835449	1.67E-56	-1.69E-46
MS.gene061176	MS.gene90981	0.813044	3.12E-51	-1.69E-46
MS.gene061176	MS.gene91933	0.803269	3.78E-49	-1.69E-46
MS.gene061176	MS.gene93206	0.821601	3.70E-53	-1.69E-46
MS.gene061176	MS.gene95438	0.825112	5.60E-54	-1.69E-46
MS.gene061176	MS.gene95800	0.801938	7.11E-49	-1.69E-46
MS.gene061176	MS.gene96949	0.809828	1.56E-50	-1.69E-46
MS.gene061176	MS.gene97306	0.846298	2.37E-59	-1.69E-46
MS.gene061176	MS.gene97761	0.816204	6.24E-52	-1.69E-46
MS.gene061176	MS.gene97762	0.82861	8.17E-55	-1.69E-46
MS.gene061176	MS.gene99595	0.826171	3.14E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061176.t1	MTR_4g121590	95.455	176	8	0	1	176	201	376	7.03e-126	358
MS.gene061176.t1	MTR_4g121570	77.714	175	39	0	1	175	201	375	9.81e-103	300
MS.gene061176.t1	MTR_4g073090	78.409	176	38	0	1	176	201	376	3.12e-102	299
MS.gene061176.t1	MTR_3g013890	40.805	174	87	3	7	172	225	390	4.31e-42	145
MS.gene061176.t1	MTR_3g102730	40.805	174	87	3	7	172	225	390	4.70e-42	145
MS.gene061176.t1	MTR_3g102760	40.116	172	101	2	2	172	220	390	9.38e-41	141
MS.gene061176.t1	MTR_1g018610	40.351	171	101	1	2	172	254	423	1.10e-40	142
MS.gene061176.t1	MTR_1g018580	39.766	171	102	1	2	172	195	364	5.54e-40	139
MS.gene061176.t1	MTR_3g102770	39.759	166	99	1	7	172	225	389	1.09e-39	139
MS.gene061176.t1	MTR_1g018590	39.181	171	103	1	2	172	225	394	1.59e-39	138
MS.gene061176.t1	MTR_3g463660	35.429	175	107	3	3	172	202	375	6.65e-30	112

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene061176.t1	AT4G24220	35.673	171	109	1	2	172	219	388	3.05e-36	129
MS.gene061176.t1	AT4G24220	35.673	171	109	1	2	172	218	387	3.82e-36	129
MS.gene061176.t1	AT5G58750	32.571	175	114	3	3	173	204	378	1.53e-23	95.9
MS.gene061176.t1	AT5G58750	32.571	175	114	3	3	173	212	386	1.64e-23	95.9

Find 0 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	GTTTAATAGTGTGAAATTCT+GGG	-	32462:16544-16563	MS.gene061176:CDS	25.0%
	CGTTTAATAGTGTGAAATTC+TGG	-	32462:16543-16562	MS.gene061176:CDS	30.0%
	TGAAAAGGAAGAGTTTGATT+TGG	-	32462:16337-16356	MS.gene061176:CDS	30.0%
	TGAAACTCAAATCGAAAAAC+TGG	+	32462:16467-16486	None:intergenic	30.0%
!	ACAAGCAATTTTCTCCAATT+TGG	+	32462:16429-16448	None:intergenic	30.0%
	CAAGCGTTTAATTGCACAAA+TGG	-	32462:16242-16261	MS.gene061176:CDS	35.0%
	CATTTGTGCAATTAAACGCT+TGG	+	32462:16244-16263	None:intergenic	35.0%
	CTATTTCCTGGATAACGAAA+CGG	+	32462:16131-16150	None:intergenic	35.0%
	TGGACTTCATAAGACCAAAT+TGG	-	32462:16412-16431	MS.gene061176:CDS	35.0%
!!	TTTTCACATGGAAGAGTATG+TGG	-	32462:16270-16289	MS.gene061176:CDS	35.0%
!!!	AATTGCTTGTTTTGAAGCCT+TGG	-	32462:16439-16458	MS.gene061176:CDS	35.0%
!!!	GACTTTTGCTGTTAAGTTTG+TGG	-	32462:16307-16326	MS.gene061176:CDS	35.0%
	AAATCGAAAAACTGGCACCA+AGG	+	32462:16459-16478	None:intergenic	40.0%
	CGTTTCGTTATCCAGGAAAT+AGG	-	32462:16129-16148	MS.gene061176:CDS	40.0%
	GTGCAGTTTATGCGTGATAA+GGG	-	32462:16359-16378	MS.gene061176:CDS	40.0%
	GTTTGTGGAGTTGGATGAAA+AGG	-	32462:16322-16341	MS.gene061176:CDS	40.0%
	TCCAAAGTGTACCTATTTCC+TGG	+	32462:16143-16162	None:intergenic	40.0%
	TCCAGGAAATAGGTACACTT+TGG	-	32462:16139-16158	MS.gene061176:CDS	40.0%
	TGCTGTTAAGTTTGTGGAGT+TGG	-	32462:16313-16332	MS.gene061176:CDS	40.0%
!	GCAATTAAACGCTTGGTTCT+TGG	+	32462:16237-16256	None:intergenic	40.0%
!	TGAGATTTGGGATCAGATTG+TGG	-	32462:16382-16401	MS.gene061176:CDS	40.0%
!!	CAAATGGTGACGTTTTCACA+TGG	-	32462:16258-16277	MS.gene061176:CDS	40.0%
	AACGAAACGGTAATCCTACC+TGG	+	32462:16118-16137	None:intergenic	45.0%
	AATTCTGGGTGATGAAGCTG+AGG	-	32462:16558-16577	MS.gene061176:CDS	45.0%
	ATTCTGGGTGATGAAGCTGA+GGG	-	32462:16559-16578	MS.gene061176:CDS	45.0%
	GATCAGATTGTGGAGGAGTA+TGG	-	32462:16392-16411	MS.gene061176:CDS	45.0%
	GCGTGATAAGGGTGAGATTT+GGG	-	32462:16370-16389	MS.gene061176:CDS	45.0%
	GGATTACCGTTTCGTTATCC+AGG	-	32462:16122-16141	MS.gene061176:CDS	45.0%
	GGTGCAGTTTATGCGTGATA+AGG	-	32462:16358-16377	MS.gene061176:CDS	45.0%
	TAATCCTACCTGGCGACATA+TGG	+	32462:16108-16127	None:intergenic	45.0%
	TGCGTGATAAGGGTGAGATT+TGG	-	32462:16369-16388	MS.gene061176:CDS	45.0%
!	CACATGGAAGAGTATGTGGA+AGG	-	32462:16274-16293	MS.gene061176:CDS	45.0%
!	GATTTGGGATCAGATTGTGG+AGG	-	32462:16385-16404	MS.gene061176:CDS	45.0%
!	GGAGCATTTCTGCGATATGA+CGG	-	32462:16160-16179	MS.gene061176:CDS	45.0%
!	GTGGGCTGCAGTTACAAAGA+AGG	-	32462:16211-16230	MS.gene061176:CDS	50.0%
	GCTCGCAAAGCAGCATGTGT+GGG	-	32462:16193-16212	MS.gene061176:CDS	55.0%
	TGCTCGCAAAGCAGCATGTG+TGG	-	32462:16192-16211	MS.gene061176:CDS	55.0%
	ATGCGCTGCCATATGTCGCC+AGG	-	32462:16097-16116	MS.gene061176:CDS	60.0%
	GCTGCCATATGTCGCCAGGT+AGG	-	32462:16101-16120	MS.gene061176:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
32462	gene	16083	16613	16083	ID=MS.gene061176
32462	mRNA	16083	16613	16083	ID=MS.gene061176.t1;Parent=MS.gene061176
32462	exon	16083	16613	16083	ID=MS.gene061176.t1.exon1;Parent=MS.gene061176.t1
32462	CDS	16083	16613	16083	ID=cds.MS.gene061176.t1;Parent=MS.gene061176.t1

Gene Sequence

>MS.gene061176

ATGGTACTAGCGACATGCGCTGCCATATGTCGCCAGGTAGGATTACCGTTTCGTTATCCAGGAAATAGGTACACTTTGGAGCATTTCTGCGATATGACGGATGCTCGTGTGCTCGCAAAGCAGCATGTGTGGGCTGCAGTTACAAAGAAGGCCAAGAACCAAGCGTTTAATTGCACAAATGGTGACGTTTTCACATGGAAGAGTATGTGGAAGGTGCTTTGTAAGACTTTTGCTGTTAAGTTTGTGGAGTTGGATGAAAAGGAAGAGTTTGATTTGGTGCAGTTTATGCGTGATAAGGGTGAGATTTGGGATCAGATTGTGGAGGAGTATGGACTTCATAAGACCAAATTGGAGAAAATTGCTTGTTTTGAAGCCTTGGTGCCAGTTTTTCGATTTGAGTTTCAACTTGTATCTAGTATGAATAAGAGTAAAAATTATGAGTTTTTTGAGTATGCTGAGACGTTTAATAGTGTGAAATTCTGGGTGATGAAGCTGAGGGAGATGAATCTCATACCCATCTACGAACATTGA

Protein sequence

>MS.gene061176.t1

MVLATCAAICRQVGLPFRYPGNRYTLEHFCDMTDARVLAKQHVWAAVTKKAKNQAFNCTNGDVFTWKSMWKVLCKTFAVKFVELDEKEEFDLVQFMRDKGEIWDQIVEEYGLHKTKLEKIACFEALVPVFRFEFQLVSSMNKSKNYEFFEYAETFNSVKFWVMKLREMNLIPIYEH