Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87310.t1 | XP_013452368.1 | 95.8 | 957 | 38 | 1 | 1 | 955 | 1 | 957 | 0.00E+00 | 1518.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87310.t1 | A0A072UAG3 | 95.8 | 957 | 38 | 1 | 1 | 955 | 1 | 957 | 0.0e+00 | 1518.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049257 | MS.gene87310 | 0.824898 | 6.29E-54 | -1.69E-46 |
| MS.gene050400 | MS.gene87310 | 0.802243 | 6.15E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene87310 | 0.8052 | 1.50E-49 | -1.69E-46 |
| MS.gene050812 | MS.gene87310 | 0.860062 | 2.68E-63 | -1.69E-46 |
| MS.gene051244 | MS.gene87310 | 0.80657 | 7.71E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene87310 | 0.825395 | 4.80E-54 | -1.69E-46 |
| MS.gene052134 | MS.gene87310 | 0.80326 | 3.79E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene87310 | 0.807733 | 4.38E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene87310 | 0.800735 | 1.25E-48 | -1.69E-46 |
| MS.gene053107 | MS.gene87310 | 0.805884 | 1.08E-49 | -1.69E-46 |
| MS.gene053330 | MS.gene87310 | 0.818091 | 2.35E-52 | -1.69E-46 |
| MS.gene054719 | MS.gene87310 | 0.873962 | 9.79E-68 | -1.69E-46 |
| MS.gene055539 | MS.gene87310 | 0.864223 | 1.42E-64 | -1.69E-46 |
| MS.gene05553 | MS.gene87310 | 0.842867 | 1.99E-58 | -1.69E-46 |
| MS.gene056796 | MS.gene87310 | 0.823865 | 1.10E-53 | -1.69E-46 |
| MS.gene056877 | MS.gene87310 | 0.822155 | 2.76E-53 | -1.69E-46 |
| MS.gene057332 | MS.gene87310 | 0.802189 | 6.31E-49 | -1.69E-46 |
| MS.gene057749 | MS.gene87310 | 0.803608 | 3.21E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene87310 | 0.813505 | 2.47E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene87310 | 0.843152 | 1.67E-58 | -1.69E-46 |
| MS.gene058700 | MS.gene87310 | 0.82171 | 3.49E-53 | -1.69E-46 |
| MS.gene059141 | MS.gene87310 | 0.805605 | 1.23E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene87310 | 0.836418 | 9.47E-57 | -1.69E-46 |
| MS.gene061231 | MS.gene87310 | 0.83573 | 1.42E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87310.t1 | MTR_6g053740 | 96.343 | 957 | 33 | 1 | 1 | 955 | 1 | 957 | 0.0 | 1889 |
| MS.gene87310.t1 | MTR_5g053260 | 33.163 | 392 | 254 | 4 | 425 | 813 | 154 | 540 | 2.07e-59 | 213 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87310.t1 | AT5G23890 | 47.059 | 986 | 443 | 25 | 1 | 949 | 1 | 944 | 0.0 | 745 |
| MS.gene87310.t1 | AT5G23890 | 48.075 | 857 | 376 | 20 | 125 | 949 | 1 | 820 | 0.0 | 687 |
| MS.gene87310.t1 | AT5G52410 | 57.514 | 539 | 198 | 5 | 410 | 924 | 215 | 746 | 0.0 | 595 |
| MS.gene87310.t1 | AT5G52410 | 35.772 | 123 | 59 | 5 | 1 | 117 | 1 | 109 | 6.62e-11 | 67.0 |
| MS.gene87310.t1 | AT5G52410 | 57.353 | 544 | 225 | 3 | 410 | 952 | 224 | 761 | 0.0 | 595 |
| MS.gene87310.t1 | AT5G52410 | 35.772 | 123 | 59 | 5 | 1 | 117 | 1 | 109 | 7.01e-11 | 66.6 |
| MS.gene87310.t1 | AT5G52410 | 58.383 | 507 | 183 | 4 | 442 | 924 | 2 | 504 | 0.0 | 572 |
| MS.gene87310.t1 | AT3G25680 | 35.219 | 389 | 244 | 3 | 427 | 813 | 171 | 553 | 9.47e-63 | 223 |
Find 213 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTCGCTTAAAATCTT+AGG | 0.129669 | 6.1:-33007273 | None:intergenic |
| CAGATGCTGCACCGACTTTC+TGG | 0.137059 | 6.1:+33010183 | MS.gene87310:intron |
| TACTGGCTTACCATCATAAT+TGG | 0.190822 | 6.1:-33007097 | None:intergenic |
| AAGATTCCTTCTTCTTCTTC+TGG | 0.201471 | 6.1:-33005153 | None:intergenic |
| ATTTCTGAATCTCCAAATTC+TGG | 0.205362 | 6.1:+33007453 | MS.gene87310:CDS |
| CTAGTAGCTGATCTTTCTTC+TGG | 0.206191 | 6.1:+33010249 | MS.gene87310:CDS |
| AAATTACAGGCTGAAGAATT+TGG | 0.211510 | 6.1:+33012430 | MS.gene87310:CDS |
| AGTAGTTTCTGCAGCTTTAC+AGG | 0.219788 | 6.1:+33007512 | MS.gene87310:CDS |
| CATCCTGCTGCTCATTATTA+AGG | 0.228977 | 6.1:-33007122 | None:intergenic |
| CAGCATAGTGCCGTCGAATT+TGG | 0.233489 | 6.1:+33012496 | MS.gene87310:CDS |
| GAGAAAAGGGATCCAGAATT+TGG | 0.266196 | 6.1:-33007465 | None:intergenic |
| TCACCAAGAACATACCTTTC+AGG | 0.266855 | 6.1:-33009778 | None:intergenic |
| TGAACTTATGAGCGAACTTT+TGG | 0.268578 | 6.1:-33012585 | None:intergenic |
| TTTCTGGTTCAGCATTAAAT+TGG | 0.274007 | 6.1:-33007068 | None:intergenic |
| AGAATACTGATTCACTTAAA+TGG | 0.278829 | 6.1:-33007365 | None:intergenic |
| TGACAGGGCTGAAAGATTAT+TGG | 0.279871 | 6.1:+33012291 | MS.gene87310:CDS |
| CTTTCAGGGGAGAAGTAAAA+AGG | 0.280105 | 6.1:-33009763 | None:intergenic |
| AAGAAGAAGAAGGAATCTTT+TGG | 0.292775 | 6.1:+33005157 | MS.gene87310:CDS |
| ACAAGATCCTGGCGCGATAA+AGG | 0.293222 | 6.1:-33010015 | None:intergenic |
| TTTCAGTTTGAAGTGGTATT+TGG | 0.300010 | 6.1:-33006966 | None:intergenic |
| GGTTGGTCCGATTCAGCAAC+TGG | 0.306448 | 6.1:+33005112 | MS.gene87310:CDS |
| ATGGGTCGGGTCTGATTCTA+AGG | 0.309439 | 6.1:+33005075 | MS.gene87310:CDS |
| TCTTCTGATGACGATATTAC+AGG | 0.314298 | 6.1:+33006676 | MS.gene87310:CDS |
| ATAGTCACCTTGAATGTTAT+CGG | 0.317196 | 6.1:-33006788 | None:intergenic |
| TCCAAGAGATAAGGCAAAAT+AGG | 0.322176 | 6.1:-33006468 | None:intergenic |
| GGATCTTGTCAGCTGGAAAA+TGG | 0.323426 | 6.1:+33010029 | MS.gene87310:CDS |
| GGAGCAAGAAAATGGTAAAT+TGG | 0.328498 | 6.1:+33006723 | MS.gene87310:CDS |
| GCAACCTTTCTGTCAGCTTC+AGG | 0.332101 | 6.1:-33010072 | None:intergenic |
| GGAATAATTGCTCTTGCATT+TGG | 0.338900 | 6.1:+33010279 | MS.gene87310:CDS |
| TGCTTGTTCTCTCACTCGTT+TGG | 0.340913 | 6.1:-33012131 | None:intergenic |
| TCCAAAACCTCATCTGGTTT+AGG | 0.343552 | 6.1:+33007183 | MS.gene87310:CDS |
| CCTCTAGATCATACTGTAAA+CGG | 0.344200 | 6.1:-33010943 | None:intergenic |
| ACTATTGATGATTCTGATAT+AGG | 0.344484 | 6.1:+33006814 | MS.gene87310:CDS |
| GATATTTCCAAAACCTCATC+TGG | 0.348534 | 6.1:+33007177 | MS.gene87310:CDS |
| GGCCTCCAAAACAAAATTAC+AGG | 0.351209 | 6.1:+33012417 | MS.gene87310:CDS |
| GTTGTGGGAGTAGGAGTTGC+TGG | 0.351961 | 6.1:+33006422 | MS.gene87310:CDS |
| TTCTAAGGGTGATGGGTTAT+CGG | 0.356171 | 6.1:+33005090 | MS.gene87310:CDS |
| AACAAGTTGGAGCAAGAAAA+TGG | 0.356887 | 6.1:+33006715 | MS.gene87310:CDS |
| CTGATCATCTAATGATGAAT+TGG | 0.359092 | 6.1:-33007397 | None:intergenic |
| CCAATTTATATCAAAATTGA+AGG | 0.360066 | 6.1:+33012390 | MS.gene87310:CDS |
| AACTCAACAGGTCTTATATA+AGG | 0.361247 | 6.1:+33007320 | MS.gene87310:CDS |
| CAAAAGCTCCTGTTCATAAC+TGG | 0.363297 | 6.1:-33010648 | None:intergenic |
| GCAGGAATCAAAACCTTTCC+TGG | 0.364648 | 6.1:-33007540 | None:intergenic |
| TCACTTAAATGGTCATTTCC+AGG | 0.371356 | 6.1:-33007354 | None:intergenic |
| ACCTAAACCAGATGAGGTTT+TGG | 0.372911 | 6.1:-33007184 | None:intergenic |
| GAAGGTACAAAGCGAGTTGC+TGG | 0.388206 | 6.1:+33012532 | MS.gene87310:CDS |
| ATTTCTAATCTCACTTGAAC+TGG | 0.390712 | 6.1:-33007151 | None:intergenic |
| TTTCCAGGCTTGGCAGAAGC+TGG | 0.396329 | 6.1:+33009679 | MS.gene87310:intron |
| AGCAAGGGCAATAGCGGCTT+GGG | 0.396547 | 6.1:-33010504 | None:intergenic |
| TTATCTCTTGGAAAACGAAA+TGG | 0.397448 | 6.1:+33006479 | MS.gene87310:CDS |
| GCCGCTATTGCCCTTGCTAC+TGG | 0.401253 | 6.1:+33010509 | MS.gene87310:CDS |
| AAGAGAGGATCAAGAAGCTT+CGG | 0.401995 | 6.1:+33010888 | MS.gene87310:CDS |
| CAATTCATCATTAGATGATC+AGG | 0.410592 | 6.1:+33007398 | MS.gene87310:CDS |
| CTGCTAGCGGTGCTCTTTCA+AGG | 0.412353 | 6.1:+33009359 | MS.gene87310:CDS |
| AAAGTTAAGGAATGAGGTTC+AGG | 0.412432 | 6.1:+33010817 | MS.gene87310:CDS |
| TAGTAGCTGATCTTTCTTCT+GGG | 0.414299 | 6.1:+33010250 | MS.gene87310:CDS |
| TGATCTTTCTTCTGGGGAGC+AGG | 0.415092 | 6.1:+33010257 | MS.gene87310:CDS |
| CAACTCAAGGGTCAGTTGAC+AGG | 0.415518 | 6.1:+33012275 | MS.gene87310:CDS |
| AGAACAAGCAAGAGCATTAG+AGG | 0.416242 | 6.1:+33012144 | MS.gene87310:CDS |
| GAAAGATCAGCTACTAGTGC+AGG | 0.416302 | 6.1:-33010243 | None:intergenic |
| GAAGATGATCAAGACAATAT+TGG | 0.419569 | 6.1:+33007288 | MS.gene87310:CDS |
| AGATTCCTTCTTCTTCTTCT+GGG | 0.423936 | 6.1:-33005152 | None:intergenic |
| ACGCCAAGGCCGGCTCTGAA+TGG | 0.424465 | 6.1:+33005056 | MS.gene87310:CDS |
| CCTGAGTCCGATAACATTCA+AGG | 0.424789 | 6.1:+33006781 | MS.gene87310:CDS |
| TATATCAAAATTGAAGGAAT+GGG | 0.425466 | 6.1:+33012396 | MS.gene87310:CDS |
| CAGTGACCCAGTTGCTGAAT+CGG | 0.427895 | 6.1:-33005119 | None:intergenic |
| CATCTTCGCTTAAAATCTTA+GGG | 0.430588 | 6.1:-33007272 | None:intergenic |
| AGAAGAAGACAGTGTTGCCT+TGG | 0.434500 | 6.1:+33010751 | MS.gene87310:CDS |
| GACCCATTCAGAGCCGGCCT+TGG | 0.436320 | 6.1:-33005059 | None:intergenic |
| AGAGGAGGCTAGAGATCGTT+GGG | 0.438647 | 6.1:+33012162 | MS.gene87310:CDS |
| ACTAGTGCAGGGCATGCATT+AGG | 0.440026 | 6.1:-33010231 | None:intergenic |
| GAAGTTACATGGCTCAATGC+TGG | 0.440097 | 6.1:+33012241 | MS.gene87310:CDS |
| TGCTCATTATTAAGGTCTAC+TGG | 0.440726 | 6.1:-33007114 | None:intergenic |
| CAAGATCCTGGCGCGATAAA+GGG | 0.441304 | 6.1:-33010014 | None:intergenic |
| TGGTGGGGTTGAAGGCTAAT+CGG | 0.442642 | 6.1:-33004955 | None:intergenic |
| CGCCAAGGCCGGCTCTGAAT+GGG | 0.442924 | 6.1:+33005057 | MS.gene87310:CDS |
| CTTTCAGGAGTTGTGGGAGT+AGG | 0.444823 | 6.1:+33006413 | MS.gene87310:intron |
| TGTCAAGTTCTGACCTTGAA+TGG | 0.445130 | 6.1:-33009592 | None:intergenic |
| CGATTCAGCAACTGGGTCAC+TGG | 0.449043 | 6.1:+33005120 | MS.gene87310:CDS |
| TGGCCTTAACAAAACTCAAC+AGG | 0.451309 | 6.1:+33007308 | MS.gene87310:CDS |
| CTGCAGCCCTTTATCGCGCC+AGG | 0.451648 | 6.1:+33010008 | MS.gene87310:intron |
| TCTAAGGGTGATGGGTTATC+GGG | 0.452141 | 6.1:+33005091 | MS.gene87310:CDS |
| AGCGAGTTGCTGGTGATTGT+AGG | 0.453284 | 6.1:+33012542 | MS.gene87310:CDS |
| CTCTAGATCATACTGTAAAC+GGG | 0.455789 | 6.1:-33010942 | None:intergenic |
| TGCGGCTATTGAATCAGAAA+TGG | 0.457851 | 6.1:+33010784 | MS.gene87310:CDS |
| TAGCAAGGGCAATAGCGGCT+TGG | 0.459860 | 6.1:-33010505 | None:intergenic |
| AAATCACCAGGTTGAACATC+AGG | 0.461055 | 6.1:-33009301 | None:intergenic |
| TATTAATGCCAGTTATGAAC+AGG | 0.463586 | 6.1:+33010640 | MS.gene87310:CDS |
| GAATGCCAGGAGCAGAGAAA+AGG | 0.464135 | 6.1:-33007479 | None:intergenic |
| CACCAAGAACATACCTTTCA+GGG | 0.466229 | 6.1:-33009777 | None:intergenic |
| AGAGAGGATCAAGAAGCTTC+GGG | 0.466699 | 6.1:+33010889 | MS.gene87310:CDS |
| TTATATCAAAATTGAAGGAA+TGG | 0.469067 | 6.1:+33012395 | MS.gene87310:CDS |
| TTGTCACAGGTTTATCTGGT+TGG | 0.469952 | 6.1:-33010478 | None:intergenic |
| AGGCCGGCTCTGAATGGGTC+GGG | 0.471957 | 6.1:+33005062 | MS.gene87310:CDS |
| TGACTTGCCTGCCTTTGAGA+TGG | 0.477195 | 6.1:-33012461 | None:intergenic |
| GAAATTGTGTTGTTTGACTC+AGG | 0.477685 | 6.1:-33007246 | None:intergenic |
| CGCGCCAGGATCTTGTCAGC+TGG | 0.483759 | 6.1:+33010022 | MS.gene87310:CDS |
| TAGTTTGCTTTCAGGAGTTG+TGG | 0.483993 | 6.1:+33006406 | MS.gene87310:intron |
| AGTGGCATCATTGATACCAT+TGG | 0.492279 | 6.1:-33006869 | None:intergenic |
| AAGTTACATGGCTCAATGCT+GGG | 0.495523 | 6.1:+33012242 | MS.gene87310:CDS |
| CACTTAAATGGTCATTTCCA+GGG | 0.496273 | 6.1:-33007353 | None:intergenic |
| TTTGGATTAACTGTAAAAGA+AGG | 0.497057 | 6.1:+33012514 | MS.gene87310:CDS |
| ACTGATGGAGCAGGAATGCC+AGG | 0.497805 | 6.1:-33007492 | None:intergenic |
| GGGTCTGATTCTAAGGGTGA+TGG | 0.500951 | 6.1:+33005082 | MS.gene87310:CDS |
| ACTGGCTTACCATCATAATT+GGG | 0.503200 | 6.1:-33007096 | None:intergenic |
| AATGCCAGGAGCAGAGAAAA+GGG | 0.505227 | 6.1:-33007478 | None:intergenic |
| GAAGCCTTTGACAACACATC+AGG | 0.506026 | 6.1:+33006642 | MS.gene87310:CDS |
| AGACCTTAATAATGAGCAGC+AGG | 0.511809 | 6.1:+33007119 | MS.gene87310:CDS |
| TATAAGGAACAGAGTATCCC+TGG | 0.514092 | 6.1:+33007336 | MS.gene87310:CDS |
| TAGAGGAGGCTAGAGATCGT+TGG | 0.514166 | 6.1:+33012161 | MS.gene87310:CDS |
| AGTTTGCTTTCAGGAGTTGT+GGG | 0.517953 | 6.1:+33006407 | MS.gene87310:intron |
| TGGAATCAGGACTTGGGCAG+AGG | 0.518677 | 6.1:+33012102 | MS.gene87310:intron |
| TACAGTTAATCCAAATTCGA+CGG | 0.518733 | 6.1:-33012506 | None:intergenic |
| AGGCTTCAGCCGAAGTTACA+TGG | 0.522394 | 6.1:+33012230 | MS.gene87310:CDS |
| GATCTTTCTTCTGGGGAGCA+GGG | 0.527714 | 6.1:+33010258 | MS.gene87310:CDS |
| TCCGTGCATAACGCCAAGGC+CGG | 0.528113 | 6.1:+33005046 | MS.gene87310:CDS |
| CAAAGAAGTGGTGGAAGACG+AGG | 0.530929 | 6.1:-33005022 | None:intergenic |
| TTGGAGAAGCTCAAACGAAT+GGG | 0.531288 | 6.1:+33012310 | MS.gene87310:CDS |
| GCGAGTTGCTGGTGATTGTA+GGG | 0.532203 | 6.1:+33012543 | MS.gene87310:CDS |
| TTTACAGGTGCCTCCAGGAA+AGG | 0.532486 | 6.1:+33007527 | MS.gene87310:CDS |
| AGTCTGACGTGATGAGAAAG+AGG | 0.539581 | 6.1:-33004983 | None:intergenic |
| AACTCAAGGGTCAGTTGACA+GGG | 0.540042 | 6.1:+33012276 | MS.gene87310:CDS |
| GCAGCTTTACAGGTGCCTCC+AGG | 0.540450 | 6.1:+33007522 | MS.gene87310:CDS |
| AAGCTGGACTTATTGAAAGC+AGG | 0.543112 | 6.1:+33009695 | MS.gene87310:CDS |
| CGCTGGTTGGTATCTGCTAG+CGG | 0.545213 | 6.1:+33009346 | MS.gene87310:CDS |
| GCCGGCCTTGGCGTTATGCA+CGG | 0.546961 | 6.1:-33005047 | None:intergenic |
| TGAAGAGGCAAAACATGAGT+TGG | 0.547136 | 6.1:+33010709 | MS.gene87310:CDS |
| ATTGGAGAAGCTCAAACGAA+TGG | 0.547210 | 6.1:+33012309 | MS.gene87310:CDS |
| CTTGTTGCATGAGTCAGCTC+GGG | 0.547834 | 6.1:+33006915 | MS.gene87310:CDS |
| GAAAAGCCTTGTCCATGGCC+AGG | 0.548184 | 6.1:+33010972 | MS.gene87310:CDS |
| GAAAACATACCCAATTATGA+TGG | 0.549370 | 6.1:+33007087 | MS.gene87310:CDS |
| GCATTATCTATGTACATGGC+AGG | 0.549375 | 6.1:-33009519 | None:intergenic |
| TAAGGCAAAATAGGTAAGCC+CGG | 0.551085 | 6.1:-33006459 | None:intergenic |
| CCGTTTACAGTATGATCTAG+AGG | 0.551417 | 6.1:+33010943 | MS.gene87310:CDS |
| GCTTCCTGAAGCTGACAGAA+AGG | 0.553773 | 6.1:+33010068 | MS.gene87310:CDS |
| GGGGAGCAGTACTCAACTCA+AGG | 0.554003 | 6.1:+33012262 | MS.gene87310:CDS |
| ACCTCCTGATGTGTTGTCAA+AGG | 0.557320 | 6.1:-33006646 | None:intergenic |
| CAAGAAAATGGTAAATTGGA+AGG | 0.558455 | 6.1:+33006727 | MS.gene87310:CDS |
| TCTAATGATGAATTGGTCAA+TGG | 0.560047 | 6.1:-33007390 | None:intergenic |
| GAAGCTGCCATCTCAAAGGC+AGG | 0.560559 | 6.1:+33012454 | MS.gene87310:CDS |
| ACTTGTTGCATGAGTCAGCT+CGG | 0.560612 | 6.1:+33006914 | MS.gene87310:CDS |
| AAGGCCGGCTCTGAATGGGT+CGG | 0.563902 | 6.1:+33005061 | MS.gene87310:CDS |
| ACTCAGGAGATGAATAATCC+CGG | 0.564022 | 6.1:-33006765 | None:intergenic |
| AGACCCGACCCATTCAGAGC+CGG | 0.565507 | 6.1:-33005065 | None:intergenic |
| AGCATTGAGCCATGTAACTT+CGG | 0.566469 | 6.1:-33012239 | None:intergenic |
| TTCTGATATAGGATCGGAGT+TGG | 0.568382 | 6.1:+33006825 | MS.gene87310:CDS |
| GGCATCATTGATACCATTGG+AGG | 0.569021 | 6.1:-33006866 | None:intergenic |
| CGACGTGTGCATAAATCACC+AGG | 0.569114 | 6.1:-33009313 | None:intergenic |
| GCAGAAACTACTGATGGAGC+AGG | 0.569460 | 6.1:-33007501 | None:intergenic |
| CGGCACTATGCTGTAACTCG+TGG | 0.570982 | 6.1:-33012486 | None:intergenic |
| TCGTGAATATGCTCGCTGGT+TGG | 0.572821 | 6.1:+33009333 | MS.gene87310:CDS |
| CCTTGAATGTTATCGGACTC+AGG | 0.575875 | 6.1:-33006781 | None:intergenic |
| AAGGTCAGATAGATACATCC+CGG | 0.576945 | 6.1:+33006746 | MS.gene87310:CDS |
| CAGAAGCATCTCCAGTAGCA+AGG | 0.578725 | 6.1:-33010520 | None:intergenic |
| AATCGGAGTTGAAGAGATGT+TGG | 0.578908 | 6.1:-33004938 | None:intergenic |
| GGCACTATGCTGTAACTCGT+GGG | 0.579849 | 6.1:-33012485 | None:intergenic |
| CTCAGGAGATGAATAATCCC+GGG | 0.581010 | 6.1:-33006764 | None:intergenic |
| AGCCGCACGTTCTTTCTCCA+AGG | 0.583452 | 6.1:-33010768 | None:intergenic |
| AGTAAATGCTGAGAACAAGT+TGG | 0.583946 | 6.1:+33006702 | MS.gene87310:CDS |
| TCCAGTAGCAAGGGCAATAG+CGG | 0.586351 | 6.1:-33010510 | None:intergenic |
| AGGGTGATGGGTTATCGGGT+TGG | 0.586727 | 6.1:+33005095 | MS.gene87310:CDS |
| TGATTCCCAGAAGAAGAAGA+AGG | 0.587923 | 6.1:+33005147 | MS.gene87310:CDS |
| AGTAGCTGATCTTTCTTCTG+GGG | 0.590948 | 6.1:+33010251 | MS.gene87310:CDS |
| TTGAACAGATATATATTCAG+TGG | 0.591238 | 6.1:-33006887 | None:intergenic |
| GTTGCTGGTGATTGTAGGGA+AGG | 0.591411 | 6.1:+33012547 | MS.gene87310:CDS |
| TTGCTCCGTGCATAACGCCA+AGG | 0.591537 | 6.1:+33005042 | MS.gene87310:CDS |
| GGTCTGATTCTAAGGGTGAT+GGG | 0.592109 | 6.1:+33005083 | MS.gene87310:CDS |
| ATCAGCACCTAAACCAGATG+AGG | 0.597185 | 6.1:-33007190 | None:intergenic |
| AATTGACAAGATCATCCTCA+TGG | 0.597415 | 6.1:+33012363 | MS.gene87310:CDS |
| GTCTGACGTGATGAGAAAGA+GGG | 0.599108 | 6.1:-33004982 | None:intergenic |
| TGAACCTGATCAAAAGCCGC+AGG | 0.600678 | 6.1:-33007558 | None:intergenic |
| AGTAGCATTATCTATGTACA+TGG | 0.600902 | 6.1:-33009523 | None:intergenic |
| AGAAGCATCTCCAGTAGCAA+GGG | 0.602025 | 6.1:-33010519 | None:intergenic |
| TGTCTATAAAACCAGAAAGT+CGG | 0.602692 | 6.1:-33010194 | None:intergenic |
| CGGCTGAAGCCTCCTTGCGG+AGG | 0.602998 | 6.1:-33012219 | None:intergenic |
| TGAACGAAAAGCCTTGTCCA+TGG | 0.606463 | 6.1:+33010967 | MS.gene87310:CDS |
| GTTGGTCCGATTCAGCAACT+GGG | 0.606734 | 6.1:+33005113 | MS.gene87310:CDS |
| TGGAGAAGCTGCCATCTCAA+AGG | 0.608787 | 6.1:+33012450 | MS.gene87310:CDS |
| TGCACGGAGCAAAGAAGTGG+TGG | 0.608863 | 6.1:-33005031 | None:intergenic |
| TGATGATTCTGATATAGGAT+CGG | 0.610207 | 6.1:+33006819 | MS.gene87310:CDS |
| ATTGTTTGGAATCAGGACTT+GGG | 0.610422 | 6.1:+33012096 | MS.gene87310:intron |
| AAGAGATGTTGGTGAACATG+TGG | 0.611282 | 6.1:-33004927 | None:intergenic |
| GCCTTTGACAACACATCAGG+AGG | 0.619924 | 6.1:+33006645 | MS.gene87310:CDS |
| AAAGCTGCAGAAACTACTGA+TGG | 0.625334 | 6.1:-33007507 | None:intergenic |
| GGCTATTGAATCAGAAATGG+AGG | 0.628296 | 6.1:+33010787 | MS.gene87310:CDS |
| AGTTACATGGCTCAATGCTG+GGG | 0.628725 | 6.1:+33012243 | MS.gene87310:CDS |
| AGAGATGTTGGTGAACATGT+GGG | 0.631272 | 6.1:-33004926 | None:intergenic |
| ATATAAATTGGGAAACCATG+AGG | 0.631489 | 6.1:-33012378 | None:intergenic |
| AGGTCAGATAGATACATCCC+GGG | 0.632359 | 6.1:+33006747 | MS.gene87310:CDS |
| CACGTCGTGAATATGCTCGC+TGG | 0.643178 | 6.1:+33009329 | MS.gene87310:CDS |
| ATTGAGCCTGATGTTCAACC+TGG | 0.648300 | 6.1:+33009295 | MS.gene87310:CDS |
| AAAGATCAGCTACTAGTGCA+GGG | 0.652793 | 6.1:-33010242 | None:intergenic |
| TGGGTCGGGTCTGATTCTAA+GGG | 0.653419 | 6.1:+33005076 | MS.gene87310:CDS |
| TTATGCACGGAGCAAAGAAG+TGG | 0.654806 | 6.1:-33005034 | None:intergenic |
| CTTCGGCTGAAGCCTCCTTG+CGG | 0.664983 | 6.1:-33012222 | None:intergenic |
| ACCAAGAACATACCTTTCAG+GGG | 0.665184 | 6.1:-33009776 | None:intergenic |
| TCTGACGTGATGAGAAAGAG+GGG | 0.665582 | 6.1:-33004981 | None:intergenic |
| GACTGAAACTGTTAGTACTG+TGG | 0.666312 | 6.1:+33007218 | MS.gene87310:CDS |
| TGCCTTGGAGAAAGAACGTG+CGG | 0.673296 | 6.1:+33010766 | MS.gene87310:CDS |
| GGAGAGACACGGAATCAAAG+TGG | 0.674644 | 6.1:+33012183 | MS.gene87310:CDS |
| ACAAGCAAGAGCATTAGAGG+AGG | 0.676263 | 6.1:+33012147 | MS.gene87310:CDS |
| AGAGATCGTTGGGAGAGACA+CGG | 0.678075 | 6.1:+33012172 | MS.gene87310:CDS |
| GGGAGCAGTACTCAACTCAA+GGG | 0.682992 | 6.1:+33012263 | MS.gene87310:CDS |
| ACAAAGTCTAATGAGTAACA+AGG | 0.685125 | 6.1:+33010847 | MS.gene87310:CDS |
| AAAGAAGTGGTGGAAGACGA+GGG | 0.686934 | 6.1:-33005021 | None:intergenic |
| GAGACACGGAATCAAAGTGG+TGG | 0.696553 | 6.1:+33012186 | MS.gene87310:CDS |
| GGTTGACGAAGACCTCCGCA+AGG | 0.709010 | 6.1:+33012207 | MS.gene87310:CDS |
| CTGACGTGATGAGAAAGAGG+GGG | 0.713118 | 6.1:-33004980 | None:intergenic |
| ATTTGATGACATCACCCCTG+AGG | 0.716657 | 6.1:+33009554 | MS.gene87310:CDS |
| GGAATCAAAACCTTTCCTGG+AGG | 0.723513 | 6.1:-33007537 | None:intergenic |
| TGACGAAGACCTCCGCAAGG+AGG | 0.731713 | 6.1:+33012210 | MS.gene87310:CDS |
| GAAGTGGTGGAAGACGAGGG+TGG | 0.757929 | 6.1:-33005018 | None:intergenic |
| CGAATGGGTGCAGATCTCAG+AGG | 0.766959 | 6.1:+33012325 | MS.gene87310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 33004911 | 33012615 | 33004911 | ID=MS.gene87310 |
| chr6.1 | mRNA | 33004911 | 33012615 | 33004911 | ID=MS.gene87310.t1;Parent=MS.gene87310 |
| chr6.1 | exon | 33004911 | 33005181 | 33004911 | ID=MS.gene87310.t1.exon1;Parent=MS.gene87310.t1 |
| chr6.1 | CDS | 33004911 | 33005181 | 33004911 | ID=cds.MS.gene87310.t1;Parent=MS.gene87310.t1 |
| chr6.1 | exon | 33006420 | 33006506 | 33006420 | ID=MS.gene87310.t1.exon2;Parent=MS.gene87310.t1 |
| chr6.1 | CDS | 33006420 | 33006506 | 33006420 | ID=cds.MS.gene87310.t1;Parent=MS.gene87310.t1 |
| chr6.1 | exon | 33006626 | 33007614 | 33006626 | ID=MS.gene87310.t1.exon3;Parent=MS.gene87310.t1 |
| chr6.1 | CDS | 33006626 | 33007614 | 33006626 | ID=cds.MS.gene87310.t1;Parent=MS.gene87310.t1 |
| chr6.1 | exon | 33009292 | 33009380 | 33009292 | ID=MS.gene87310.t1.exon4;Parent=MS.gene87310.t1 |
| chr6.1 | CDS | 33009292 | 33009380 | 33009292 | ID=cds.MS.gene87310.t1;Parent=MS.gene87310.t1 |
| chr6.1 | exon | 33009497 | 33009600 | 33009497 | ID=MS.gene87310.t1.exon5;Parent=MS.gene87310.t1 |
| chr6.1 | CDS | 33009497 | 33009600 | 33009497 | ID=cds.MS.gene87310.t1;Parent=MS.gene87310.t1 |
| chr6.1 | exon | 33009686 | 33009785 | 33009686 | ID=MS.gene87310.t1.exon6;Parent=MS.gene87310.t1 |
| chr6.1 | CDS | 33009686 | 33009785 | 33009686 | ID=cds.MS.gene87310.t1;Parent=MS.gene87310.t1 |
| chr6.1 | exon | 33010014 | 33010089 | 33010014 | ID=MS.gene87310.t1.exon7;Parent=MS.gene87310.t1 |
| chr6.1 | CDS | 33010014 | 33010089 | 33010014 | ID=cds.MS.gene87310.t1;Parent=MS.gene87310.t1 |
| chr6.1 | exon | 33010186 | 33010300 | 33010186 | ID=MS.gene87310.t1.exon8;Parent=MS.gene87310.t1 |
| chr6.1 | CDS | 33010186 | 33010300 | 33010186 | ID=cds.MS.gene87310.t1;Parent=MS.gene87310.t1 |
| chr6.1 | exon | 33010462 | 33010993 | 33010462 | ID=MS.gene87310.t1.exon9;Parent=MS.gene87310.t1 |
| chr6.1 | CDS | 33010462 | 33010993 | 33010462 | ID=cds.MS.gene87310.t1;Parent=MS.gene87310.t1 |
| chr6.1 | exon | 33012111 | 33012615 | 33012111 | ID=MS.gene87310.t1.exon10;Parent=MS.gene87310.t1 |
| chr6.1 | CDS | 33012111 | 33012615 | 33012111 | ID=cds.MS.gene87310.t1;Parent=MS.gene87310.t1 |
| Gene Sequence |
| Protein sequence |
