AlfalfaGEDB | MS.gene050400

M. sativa cultivar XinJiangDaYe / MS.gene050400

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0008270 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043167 GO:0043169 GO:0043565 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050400.t1	XP_003595135.2	92.4	238	18	0	37	274	65	302	1.40E-117	432.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050400.t1	Q9SZI6	36.0	267	127	8	43	268	89	352	8.5e-23	109.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene050400.t1	G7IIE3	92.4	238	18	0	37	274	60	297	1.0e-117	432.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050399	MS.gene050400	0.898243	6.42E-77	-1.69E-46
MS.gene050400	MS.gene050426	-0.814943	1.19E-51	-1.69E-46
MS.gene050400	MS.gene050464	0.811924	5.49E-51	-1.69E-46
MS.gene050400	MS.gene050593	0.802977	4.34E-49	-1.69E-46
MS.gene050400	MS.gene050670	0.837122	6.26E-57	-1.69E-46
MS.gene050400	MS.gene050971	0.820074	8.31E-53	-1.69E-46
MS.gene050400	MS.gene05105	0.807166	5.77E-50	-1.69E-46
MS.gene050400	MS.gene051521	0.811278	7.58E-51	-1.69E-46
MS.gene050400	MS.gene051525	0.865327	6.40E-65	-1.69E-46
MS.gene050400	MS.gene052011	-0.822572	2.20E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 58 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTTAGCATTCATCAGA+AGG	0.570288	2.3:+50546078	None:intergenic
AAATGGTGAGACTCTTGTGG+TGG	0.684853	2.3:-50546337	MS.gene050400:CDS
AACAAGATGGAGCAGCAACT+TGG	0.518537	2.3:-50546184	MS.gene050400:CDS
AACTTCTTTCCCTTCACATA+TGG	0.359398	2.3:+50546306	None:intergenic
AAGACCCCTCTCTGGAGAAG+TGG	0.553472	2.3:-50547119	MS.gene050400:CDS
AAGTGGACCAACTGGTCCCA+AGG	0.591915	2.3:-50547102	MS.gene050400:intron
AATGTGCACCACAATTCAAA+AGG	0.514128	2.3:-50546251	MS.gene050400:CDS
ACACAACTAAGACCCCTCTC+TGG	0.508622	2.3:-50547127	MS.gene050400:CDS
ACCATTTGCAGCTGCTGCAA+GGG	0.392222	2.3:+50546353	None:intergenic
AGAGAGGGGTCTTAGTTGTG+TGG	0.598153	2.3:+50547129	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGGAAAAGGATGAAAAAGAT+TGG	-	chr2.3:50546503-50546522	MS.gene050400:intron	30.0%
AGTTGCAAATCAAAAGGAAA+AGG	-	chr2.3:50547592-50547611	MS.gene050400:intron	30.0%
ATATTAGATGTCAGTCTATG+AGG	-	chr2.3:50547024-50547043	MS.gene050400:intron	30.0%
CAAAGAAGAGAATGATTAAG+AGG	-	chr2.3:50546590-50546609	MS.gene050400:intron	30.0%
GAAAACTAAAGCCTCTATTA+TGG	+	chr2.3:50547071-50547090	None:intergenic	30.0%
GAAAGAAGTTGCAAATCAAA+AGG	-	chr2.3:50547586-50547605	MS.gene050400:intron	30.0%
GAACAAATCTTATACAAGCA+AGG	+	chr2.3:50547314-50547333	None:intergenic	30.0%
TTGTTTCAGAACCATAATAG+AGG	-	chr2.3:50547057-50547076	MS.gene050400:intron	30.0%
AACTTCTTTCCCTTCACATA+TGG	+	chr2.3:50547576-50547595	None:intergenic	35.0%
AATGTGCACCACAATTCAAA+AGG	-	chr2.3:50547628-50547647	MS.gene050400:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	50546083	50547818	50546083	ID=MS.gene050400
chr2.3	mRNA	50546083	50547818	50546083	ID=MS.gene050400.t1;Parent=MS.gene050400
chr2.3	exon	50547673	50547818	50547673	ID=MS.gene050400.t1.exon1;Parent=MS.gene050400.t1
chr2.3	CDS	50547673	50547818	50547673	ID=cds.MS.gene050400.t1;Parent=MS.gene050400.t1
chr2.3	exon	50547103	50547444	50547103	ID=MS.gene050400.t1.exon2;Parent=MS.gene050400.t1
chr2.3	CDS	50547103	50547444	50547103	ID=cds.MS.gene050400.t1;Parent=MS.gene050400.t1
chr2.3	exon	50546083	50546421	50546083	ID=MS.gene050400.t1.exon3;Parent=MS.gene050400.t1
chr2.3	CDS	50546083	50546421	50546083	ID=cds.MS.gene050400.t1;Parent=MS.gene050400.t1

Gene Sequence

>MS.gene050400

ATCACAGTCACCATCTCTTCAATACTAATCAACAAGCCACTTCTTCATCTTCTTCTCTATCATACTCTATACTCTTCAACCAAAATCAAGATCAAACAAGATCTTATTCTTGGGAGTCAAACCACATACTAAGTGATGGTGTAGAGGTAACATATACATATAATCATATTATATTATTTAGTATTAAGTAGCACCCCTTTAAAATTTTATATATATCTTTGCTTTAATCAATTTGATCATGCATAAGCTTATTTATATATTTTTTGATTTATTTATTTCTGTTAAAAAAAAAGCTTATTGTTTTAATATGTAGAAATTTATCTTGCTGTTTCAAAAAAAAAAATTGATCAAGCATGTGATTGTCATCCTTTTAGGTTAAGAATTTTGTACCTTCTAGTGAATCATGGGATCATCAAGAAGAGGAAAAGGATGAAAAAGATTGGAAGAAAGAAGATAATAATGAAAATTTTAGGGATGAGGATAGAACTTCAATGAAGTGGATGCCATCAAAGAAGAGAATGATTAAGAGGATGATGGAAGATCAAAGGGCTTCTGAGCAAGAGTTTGAGAAACAAATTAAGCAAGTATCACCTGATCTAGTAGGAACTGAGAATAGTAGCAACAACAATTTTTCAAACAACAGCACTGTTAGGGTTTGTACTGACTGCCACACAACTAAGACCCCTCTCTGGAGAAGTGGACCAACTGGTCCCAAGGTACATATTGCTCACGGATTCTTCCTTTTAAAATAATATTTTTTTCATGATAAATAATTTACTTGTTACATTGTGCTTCTAATATGAACATTTTAGAGAAATGTTTTAAAGATGAAGTTTGAGGTTAATTAATTTGGTATAACAGGTTAATCCAATTCTTTTTTATTACTATTGAGAAAATTTTATGGTGTTATATCAGATAACAATTCAAATGGAAACTGTTGTATATTAGATGTCAGTCTATGAGGTCTACCTGCATTGTTTCAGAACCATAATAGAGGCTTTAGTTTTCATATGTTGATCTCGTGACTATTTTAAATATATTAACGACAAAAACAAATAATTAATTATTTCAGTGTAATTTGAAGCACTTTAATGATTGTAAACAAAGGTTATTAATTATGGTAATTGAAATTCCATTATGTTGCAAATAATTACATCAAATACTACTGATATATACAACTTCTACGACAAACTCTTATATCGCGACATCGATATATAGATTAGATAAACCTTGCTTGTATAAGATTTGTTCATGATTAAGCTCTTTTATGGCTTAGGAACTCATCCTCGATATAACTTCGCATTAACAATGCGAGTATAATTATTTGAAAAAATGAATTATGTGATTTAAAATTTTAAACTAAATATTGAAAAAATACAAATATGTTTTTGTAACAGTCACTTTGCAATGCCTGCGGCATTCGACAAAGAAAAGCGAGACGCGCCCTTGCAGCAGCTGCAAATGGTGAGACTCTTGTGGTGGCAGAGAAACCATATGTGAAGGGAAAGAAGTTGCAAATCAAAAGGAAAAGGTCAAAAACTGATCAATGTGCACCACAATTCAAAAGGAAGGGTAAAAGTGAAAACAAGTGTAATAATTTTGAAGATTTGATAACAAGATGGAGCAGCAACTTGGCTTCCCATCAAGTCTTCCCTCAAGATGTTAAGGAGGCTGCTATTCTACTCATGGCTTTATCTTCTGGCTTGCTTAATGGATTTCCTTCTGATGAATGCTAA

Protein sequence

>MS.gene050400.t1

ITVTISSILINKPLLHLLLYHTLYSSTKIKIKQDLILGSQTTYUVMVURLRILYLLVNHGIIKKRKRMKKIGRKKIIMKILGMRIELQUSGCHQRREULRGUWKIKGLLSKSLRNKLSKYHLIUUELRIVATTIFQTTALLGFVLTATQLRPLSGEVDQLVPSHFAMPAAFDKEKRDAPLQQLQMVRLLWWQRNHMURERSCKSKGKGQKLINVHHNSKGRVKVKTSVIILKIUUQDGAATWLPIKSSLKMLRRLLFYSWLYLLACLMDFLLMNA