Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87527.t1 | XP_003604990.1 | 99.5 | 219 | 1 | 0 | 1 | 219 | 1 | 219 | 1.40E-99 | 372.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87527.t1 | O48850 | 73.5 | 219 | 58 | 0 | 1 | 219 | 66 | 284 | 2.3e-87 | 323.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87527.t1 | G7JUL3 | 99.5 | 219 | 1 | 0 | 1 | 219 | 1 | 219 | 9.9e-100 | 372.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053083 | MS.gene87527 | 0.821034 | 5.00E-53 | -1.69E-46 |
| MS.gene058111 | MS.gene87527 | 0.800317 | 1.53E-48 | -1.69E-46 |
| MS.gene059837 | MS.gene87527 | -0.832779 | 7.78E-56 | -1.69E-46 |
| MS.gene060187 | MS.gene87527 | 0.8069 | 6.57E-50 | -1.69E-46 |
| MS.gene060595 | MS.gene87527 | 0.831121 | 2.00E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87527.t1 | MTR_4g022570 | 99.543 | 219 | 1 | 0 | 1 | 219 | 1 | 219 | 3.56e-165 | 454 |
| MS.gene87527.t1 | MTR_1g047720 | 78.995 | 219 | 46 | 0 | 1 | 219 | 1 | 219 | 2.90e-139 | 389 |
| MS.gene87527.t1 | MTR_7g058900 | 84.018 | 219 | 35 | 0 | 1 | 219 | 1 | 219 | 4.44e-129 | 363 |
| MS.gene87527.t1 | MTR_2g436870 | 71.233 | 219 | 63 | 0 | 1 | 219 | 1 | 219 | 2.24e-122 | 346 |
| MS.gene87527.t1 | MTR_4g083490 | 79.793 | 193 | 39 | 0 | 3 | 195 | 5 | 197 | 7.71e-122 | 344 |
| MS.gene87527.t1 | MTR_2g028790 | 74.227 | 194 | 50 | 0 | 2 | 195 | 6 | 199 | 1.38e-115 | 328 |
| MS.gene87527.t1 | MTR_7g058640 | 74.872 | 195 | 49 | 0 | 1 | 195 | 1 | 195 | 9.32e-111 | 316 |
| MS.gene87527.t1 | MTR_1g111890 | 56.303 | 238 | 85 | 1 | 1 | 219 | 1 | 238 | 1.75e-101 | 294 |
| MS.gene87527.t1 | MTR_7g058640 | 74.419 | 172 | 44 | 0 | 1 | 172 | 1 | 172 | 2.74e-96 | 279 |
| MS.gene87527.t1 | MTR_1g047710 | 79.839 | 124 | 25 | 0 | 64 | 187 | 12 | 135 | 4.40e-74 | 221 |
| MS.gene87527.t1 | MTR_4g022470 | 95.370 | 108 | 5 | 0 | 64 | 171 | 10 | 117 | 4.06e-71 | 212 |
| MS.gene87527.t1 | MTR_7g058640 | 77.778 | 117 | 26 | 0 | 79 | 195 | 1 | 117 | 5.65e-64 | 195 |
| MS.gene87527.t1 | MTR_5g089370 | 39.151 | 212 | 126 | 3 | 6 | 216 | 3 | 212 | 3.11e-49 | 160 |
| MS.gene87527.t1 | MTR_4g052550 | 36.279 | 215 | 134 | 3 | 5 | 218 | 2 | 214 | 8.05e-46 | 151 |
| MS.gene87527.t1 | MTR_4g115390 | 33.180 | 217 | 136 | 5 | 6 | 216 | 3 | 216 | 1.08e-40 | 139 |
| MS.gene87527.t1 | MTR_4g022550 | 98.387 | 62 | 1 | 0 | 158 | 219 | 10 | 71 | 2.64e-38 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87527.t1 | AT1G04760 | 80.365 | 219 | 43 | 0 | 1 | 219 | 1 | 219 | 4.70e-133 | 373 |
| MS.gene87527.t1 | AT1G04760 | 80.365 | 219 | 43 | 0 | 1 | 219 | 1 | 219 | 4.70e-133 | 373 |
| MS.gene87527.t1 | AT1G04750 | 83.105 | 219 | 37 | 0 | 1 | 219 | 1 | 219 | 7.42e-129 | 362 |
| MS.gene87527.t1 | AT2G32670 | 82.192 | 219 | 39 | 0 | 1 | 219 | 66 | 284 | 1.41e-128 | 364 |
| MS.gene87527.t1 | AT2G33120 | 83.105 | 219 | 37 | 0 | 1 | 219 | 1 | 219 | 2.28e-128 | 361 |
| MS.gene87527.t1 | AT2G33120 | 79.736 | 227 | 38 | 1 | 1 | 219 | 1 | 227 | 3.68e-125 | 353 |
| MS.gene87527.t1 | AT3G54300 | 56.723 | 238 | 84 | 2 | 1 | 219 | 1 | 238 | 2.23e-100 | 291 |
| MS.gene87527.t1 | AT3G54300 | 56.723 | 238 | 84 | 2 | 1 | 219 | 1 | 238 | 2.23e-100 | 291 |
| MS.gene87527.t1 | AT3G54300 | 56.723 | 238 | 84 | 2 | 1 | 219 | 1 | 238 | 2.23e-100 | 291 |
| MS.gene87527.t1 | AT2G33110 | 67.580 | 219 | 67 | 1 | 1 | 219 | 1 | 215 | 1.48e-96 | 280 |
| MS.gene87527.t1 | AT4G15780 | 70.391 | 179 | 52 | 1 | 1 | 178 | 1 | 179 | 4.29e-95 | 275 |
| MS.gene87527.t1 | AT2G33110 | 69.753 | 162 | 49 | 0 | 1 | 162 | 1 | 162 | 6.20e-85 | 250 |
| MS.gene87527.t1 | AT1G04750 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 4.18e-74 | 221 |
| MS.gene87527.t1 | AT1G04750 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 4.18e-74 | 221 |
| MS.gene87527.t1 | AT1G04750 | 84.397 | 141 | 22 | 0 | 79 | 219 | 1 | 141 | 4.18e-74 | 221 |
| MS.gene87527.t1 | AT5G11150 | 41.284 | 218 | 120 | 6 | 5 | 218 | 2 | 215 | 1.22e-52 | 169 |
| MS.gene87527.t1 | AT5G11150 | 40.553 | 217 | 123 | 5 | 5 | 218 | 2 | 215 | 2.09e-52 | 169 |
| MS.gene87527.t1 | AT5G22360 | 37.963 | 216 | 130 | 3 | 5 | 218 | 2 | 215 | 1.09e-50 | 164 |
| MS.gene87527.t1 | AT4G32150 | 38.498 | 213 | 128 | 3 | 5 | 216 | 2 | 212 | 3.73e-48 | 157 |
| MS.gene87527.t1 | AT2G25340 | 37.850 | 214 | 128 | 4 | 5 | 216 | 2 | 212 | 2.19e-43 | 145 |
| MS.gene87527.t1 | AT2G33120 | 88.372 | 86 | 10 | 0 | 134 | 219 | 52 | 137 | 3.79e-36 | 124 |
| MS.gene87527.t1 | AT3G24890 | 53.191 | 94 | 38 | 2 | 113 | 200 | 14 | 107 | 5.57e-25 | 95.5 |
| MS.gene87527.t1 | AT3G24890 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.01e-15 | 68.9 |
| MS.gene87527.t1 | AT3G24890 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.01e-15 | 68.9 |
| MS.gene87527.t1 | AT3G24890 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.01e-15 | 68.9 |
| MS.gene87527.t1 | AT3G24890 | 53.125 | 64 | 26 | 1 | 113 | 176 | 14 | 73 | 2.01e-15 | 68.9 |
Find 44 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGTCTTAACAAAGAATT+TGG | 0.112791 | 4.1:+75780554 | MS.gene87527:CDS |
| GGGAGAGAAGATTGAGGTTT+TGG | 0.245399 | 4.1:+75781811 | MS.gene87527:CDS |
| CTGTGCAGGCACAAGATTTC+AGG | 0.259480 | 4.1:+75782485 | MS.gene87527:intron |
| ACCACATCTTTCTTCTCAAC+TGG | 0.279528 | 4.1:-75782519 | None:intergenic |
| TTCAGCTTCCTCGTCGATAA+TGG | 0.292725 | 4.1:+75779279 | MS.gene87527:CDS |
| TGCATTTGCTCCTTCAACTT+TGG | 0.326828 | 4.1:-75780663 | None:intergenic |
| ATACGTTCAAGAAAAGCTAT+TGG | 0.353729 | 4.1:-75780476 | None:intergenic |
| ATCATTGATCTATAGCTTTG+TGG | 0.397799 | 4.1:+75779128 | MS.gene87527:CDS |
| AACTTCCTGCTTCTAACAAC+AGG | 0.400029 | 4.1:+75779229 | MS.gene87527:CDS |
| AACTGAGAACCTTCGCTCTC+AGG | 0.417900 | 4.1:+75781841 | MS.gene87527:CDS |
| GCAATATTGTGTGGAACATC+CGG | 0.431593 | 4.1:+75780683 | MS.gene87527:CDS |
| GGCACAAGATTTCAGGCAGC+AGG | 0.435566 | 4.1:+75782492 | MS.gene87527:intron |
| GTTATTTGCAGGTTATTGAC+AGG | 0.439122 | 4.1:+75781789 | MS.gene87527:intron |
| GCAAGTTTGCTAACTTCCTC+CGG | 0.449150 | 4.1:-75780702 | None:intergenic |
| TGAAGTCAAAGGAGTTATGA+TGG | 0.459537 | 4.1:+75780746 | MS.gene87527:CDS |
| ATTGTTCTTTCTGTGTGCCA+TGG | 0.487473 | 4.1:+75782601 | MS.gene87527:CDS |
| ATCTATAGCTTTGTGGCTCG+TGG | 0.490761 | 4.1:+75779135 | MS.gene87527:CDS |
| CCACATCTTTCTTCTCAACT+GGG | 0.492600 | 4.1:-75782518 | None:intergenic |
| ATGCTTTAGACCAAAGTTGA+AGG | 0.496438 | 4.1:+75780653 | MS.gene87527:intron |
| AAAGTCTTAACAAAGAATTT+GGG | 0.498770 | 4.1:+75780555 | MS.gene87527:CDS |
| TGACAGGGGAGAGAAGATTG+AGG | 0.506422 | 4.1:+75781805 | MS.gene87527:CDS |
| GTAAACCTGTTGTTAGAAGC+AGG | 0.509943 | 4.1:-75779234 | None:intergenic |
| TTGAAGACACTGGAAAGCTA+TGG | 0.538078 | 4.1:-75779205 | None:intergenic |
| TTTAATAAAAGATATGGTGG+AGG | 0.542291 | 4.1:+75780509 | MS.gene87527:CDS |
| GCGGAGTACAGCGACTTCAC+AGG | 0.545912 | 4.1:+75779171 | MS.gene87527:CDS |
| GTTGTAGCAGTGGAGTCTGT+TGG | 0.563744 | 4.1:+75780443 | MS.gene87527:CDS |
| TAAGTTAACAACTGAAGCCA+TGG | 0.574043 | 4.1:-75782618 | None:intergenic |
| GCTGTACTCCGCAAGAATCA+CGG | 0.574293 | 4.1:-75779160 | None:intergenic |
| AGGTTTACTTACAATTGCGA+TGG | 0.575435 | 4.1:+75779249 | MS.gene87527:CDS |
| TTATTTGCAGGTTATTGACA+GGG | 0.579398 | 4.1:+75781790 | MS.gene87527:intron |
| TCAATGCAATTATGATAGCA+AGG | 0.581523 | 4.1:-75782570 | None:intergenic |
| GCTCAAGTTTCTGAAGTCAA+AGG | 0.586109 | 4.1:+75780735 | MS.gene87527:CDS |
| AGCTTACTGTGTTGTAGCAG+TGG | 0.596996 | 4.1:+75780433 | MS.gene87527:intron |
| TCGTGGTACCGTGATTCTTG+CGG | 0.609688 | 4.1:+75779152 | MS.gene87527:CDS |
| GCACAAGATTTCAGGCAGCA+GGG | 0.625497 | 4.1:+75782493 | MS.gene87527:CDS |
| AGCATCTAACCTGAGAGCGA+AGG | 0.629350 | 4.1:-75781850 | None:intergenic |
| TATTTGCAGGTTATTGACAG+GGG | 0.645793 | 4.1:+75781791 | MS.gene87527:intron |
| ATTATCGACGAGGAAGCTGA+AGG | 0.649726 | 4.1:-75779277 | None:intergenic |
| CCCAGTTGAGAAGAAAGATG+TGG | 0.664612 | 4.1:+75782518 | MS.gene87527:CDS |
| AAGACACTGGAAAGCTATGG+TGG | 0.671924 | 4.1:-75779202 | None:intergenic |
| GGAGCAAATGCAATATTGTG+TGG | 0.673674 | 4.1:+75780674 | MS.gene87527:CDS |
| TACTGAATCCATTATCGACG+AGG | 0.683208 | 4.1:-75779287 | None:intergenic |
| ATATTGTGTGGAACATCCGG+AGG | 0.702619 | 4.1:+75780686 | MS.gene87527:CDS |
| TATGATGGAAAATATCGACA+AGG | 0.735916 | 4.1:+75780761 | MS.gene87527:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTATGTAAATTGAAAT+AGG | + | chr4.1:75781918-75781937 | MS.gene87527:intron | 10.0% |
| !!! | TTTTATTTAACTAGAATTAT+TGG | - | chr4.1:75782316-75782335 | None:intergenic | 10.0% |
| !! | AATATCGATATTATTAACTA+GGG | + | chr4.1:75779398-75779417 | MS.gene87527:intron | 15.0% |
| !! | ATTGAAAAAAACAAAATGTA+AGG | - | chr4.1:75780156-75780175 | None:intergenic | 15.0% |
| !! | ATTTACATAAATAAAACTGT+TGG | - | chr4.1:75781912-75781931 | None:intergenic | 15.0% |
| !! | CATACAATATTCATAATTAA+TGG | - | chr4.1:75782425-75782444 | None:intergenic | 15.0% |
| !! | TTAATTATGAATATTGTATG+AGG | + | chr4.1:75782425-75782444 | MS.gene87527:intron | 15.0% |
| !!! | ATCATAAATTTTAAGATAAG+AGG | - | chr4.1:75780313-75780332 | None:intergenic | 15.0% |
| !!! | ATTCTTAAACTTCTATTTTT+CGG | - | chr4.1:75779558-75779577 | None:intergenic | 15.0% |
| !!! | GATGATTTTAATAAAAGATA+TGG | + | chr4.1:75780503-75780522 | MS.gene87527:CDS | 15.0% |
| !!! | TCATAAATTTTAAGATAAGA+GGG | - | chr4.1:75780312-75780331 | None:intergenic | 15.0% |
| !!! | TTCATCTACATATATTTTTT+TGG | + | chr4.1:75780342-75780361 | MS.gene87527:intron | 15.0% |
| !! | AAAAGTCTTAACAAAGAATT+TGG | + | chr4.1:75780554-75780573 | MS.gene87527:CDS | 20.0% |
| !! | AAAATTAGATGTGAGAATTT+GGG | - | chr4.1:75782181-75782200 | None:intergenic | 20.0% |
| !! | AAAGTCTTAACAAAGAATTT+GGG | + | chr4.1:75780555-75780574 | MS.gene87527:CDS | 20.0% |
| !! | AAATCTAACATAATTAACGT+AGG | + | chr4.1:75779530-75779549 | MS.gene87527:intron | 20.0% |
| !! | CAAAGAAATCATCAATTATA+TGG | - | chr4.1:75781233-75781252 | None:intergenic | 20.0% |
| !! | CAATATCGATATTATTAACT+AGG | + | chr4.1:75779397-75779416 | MS.gene87527:intron | 20.0% |
| !! | GAATTTCATTTAATATCATG+TGG | + | chr4.1:75781745-75781764 | MS.gene87527:intron | 20.0% |
| !! | TTAAACCATTTATGACTATA+TGG | + | chr4.1:75781459-75781478 | MS.gene87527:intron | 20.0% |
| !! | TTAACTAGAATTATTGGATT+TGG | - | chr4.1:75782310-75782329 | None:intergenic | 20.0% |
| !! | TTACCAGTTATTTATTATCT+AGG | + | chr4.1:75782368-75782387 | MS.gene87527:intron | 20.0% |
| !!! | ATCCAAAACTTTAAAACATT+GGG | - | chr4.1:75782109-75782128 | None:intergenic | 20.0% |
| !!! | CTTTTATGTATTTATAGAAC+CGG | - | chr4.1:75781125-75781144 | None:intergenic | 20.0% |
| !!! | GATTTTAATAAAAGATATGG+TGG | + | chr4.1:75780506-75780525 | MS.gene87527:CDS | 20.0% |
| !!! | GTAAGTTTTTTTTTCTGTTT+TGG | - | chr4.1:75779632-75779651 | None:intergenic | 20.0% |
| !!! | TAATCTGATTTTATGAATTG+AGG | - | chr4.1:75780085-75780104 | None:intergenic | 20.0% |
| !!! | TATAACATTGACTATATTCA+TGG | - | chr4.1:75782065-75782084 | None:intergenic | 20.0% |
| !!! | TATCATTATATGTTATTTGC+AGG | + | chr4.1:75781778-75781797 | MS.gene87527:intron | 20.0% |
| !!! | TATTTTTGTAGAATCGATAT+AGG | - | chr4.1:75781571-75781590 | None:intergenic | 20.0% |
| ! | AAAATAATCCAATGATGCTT+TGG | + | chr4.1:75779990-75780009 | MS.gene87527:intron | 25.0% |
| ! | AAAATCGCAATCAAAATCAA+AGG | - | chr4.1:75781606-75781625 | None:intergenic | 25.0% |
| ! | AAACAAGTTCAACAGAAAAA+AGG | - | chr4.1:75780393-75780412 | None:intergenic | 25.0% |
| ! | AACTGAGACAAAATACTTAA+AGG | - | chr4.1:75781373-75781392 | None:intergenic | 25.0% |
| ! | ATAACATGTAGATACCAATT+CGG | - | chr4.1:75780862-75780881 | None:intergenic | 25.0% |
| ! | ATAAGCAATTTAAGCAAGTA+AGG | - | chr4.1:75780267-75780286 | None:intergenic | 25.0% |
| ! | ATAATATCGATATTGTCACT+TGG | - | chr4.1:75779392-75779411 | None:intergenic | 25.0% |
| ! | ATATCATTGTTGTCAAAATC+CGG | + | chr4.1:75780886-75780905 | MS.gene87527:intron | 25.0% |
| ! | ATGCATATAATAGTTAGTTC+TGG | + | chr4.1:75781981-75782000 | MS.gene87527:intron | 25.0% |
| ! | GAAAATTAGATGTGAGAATT+TGG | - | chr4.1:75782182-75782201 | None:intergenic | 25.0% |
| ! | GAATTCCATATAGTCATAAA+TGG | - | chr4.1:75781467-75781486 | None:intergenic | 25.0% |
| ! | GATATATTCAAAGGAAAAAG+AGG | - | chr4.1:75779360-75779379 | None:intergenic | 25.0% |
| ! | GTATGAGGATTATGAATTAT+TGG | + | chr4.1:75782440-75782459 | MS.gene87527:intron | 25.0% |
| ! | TAGCCTAGATAATAAATAAC+TGG | - | chr4.1:75782374-75782393 | None:intergenic | 25.0% |
| ! | TATGACTACTAAAGAATATC+TGG | + | chr4.1:75781402-75781421 | MS.gene87527:intron | 25.0% |
| ! | TATTGGAATGTCAATTGAAA+TGG | + | chr4.1:75782457-75782476 | MS.gene87527:intron | 25.0% |
| ! | TATTTACTTGGTATAGATGT+TGG | + | chr4.1:75779601-75779620 | MS.gene87527:intron | 25.0% |
| ! | TGAAAAAAGTCGTAAAATTC+TGG | - | chr4.1:75780928-75780947 | None:intergenic | 25.0% |
| ! | TTACTTGCTTAAATTGCTTA+TGG | + | chr4.1:75780266-75780285 | MS.gene87527:intron | 25.0% |
| ! | TTCATAGCAGTATAAAAAAC+AGG | + | chr4.1:75780964-75780983 | MS.gene87527:intron | 25.0% |
| ! | TTGGAACATGATATATTCAA+AGG | - | chr4.1:75779369-75779388 | None:intergenic | 25.0% |
| ! | TTTAATAAAAGATATGGTGG+AGG | + | chr4.1:75780509-75780528 | MS.gene87527:CDS | 25.0% |
| !! | AATGAAATTCTAGAGACAAT+TGG | - | chr4.1:75781735-75781754 | None:intergenic | 25.0% |
| !! | CATAAATAAAACTGTTGGTT+TGG | - | chr4.1:75781907-75781926 | None:intergenic | 25.0% |
| !!! | ATCCCAATGTTTTAAAGTTT+TGG | + | chr4.1:75782104-75782123 | MS.gene87527:intron | 25.0% |
| !!! | ATTGACTCGTATCATAAAAA+TGG | - | chr4.1:75781061-75781080 | None:intergenic | 25.0% |
| !!! | CAATGTTTTAAAGTTTTGGA+TGG | + | chr4.1:75782108-75782127 | MS.gene87527:intron | 25.0% |
| !!! | CATCCAAAACTTTAAAACAT+TGG | - | chr4.1:75782110-75782129 | None:intergenic | 25.0% |
| !!! | TGGATTTTAAGATTTATGTC+CGG | - | chr4.1:75780908-75780927 | None:intergenic | 25.0% |
| !!! | TGTATTTTGAGCAATGTATA+AGG | + | chr4.1:75779805-75779824 | MS.gene87527:intron | 25.0% |
| !!! | TTTTAATTGTGATGATGAAG+TGG | + | chr4.1:75779741-75779760 | MS.gene87527:intron | 25.0% |
| AAAATCGCAAGCAAAATTGA+TGG | - | chr4.1:75781528-75781547 | None:intergenic | 30.0% | |
| ATACGTTCAAGAAAAGCTAT+TGG | - | chr4.1:75780479-75780498 | None:intergenic | 30.0% | |
| ATTGAAATAGGAGATGAGTA+TGG | + | chr4.1:75781930-75781949 | MS.gene87527:intron | 30.0% | |
| GAATGTCAATTGAAATGGTA+TGG | + | chr4.1:75782462-75782481 | MS.gene87527:intron | 30.0% | |
| TATTAGTGAGCTTCAACATA+TGG | - | chr4.1:75780190-75780209 | None:intergenic | 30.0% | |
| TCAATGCAATTATGATAGCA+AGG | - | chr4.1:75782573-75782592 | None:intergenic | 30.0% | |
| TTATTTGCAGGTTATTGACA+GGG | + | chr4.1:75781790-75781809 | MS.gene87527:intron | 30.0% | |
| TTTAGATTGAAGAACCGAAT+TGG | + | chr4.1:75780845-75780864 | MS.gene87527:intron | 30.0% | |
| ! | AAAAATCTCCAAAGCATCAT+TGG | - | chr4.1:75780001-75780020 | None:intergenic | 30.0% |
| ! | AATTTTCTTGTTGATGCCTT+AGG | + | chr4.1:75782195-75782214 | MS.gene87527:intron | 30.0% |
| ! | AGCTTTTCTTGAACGTATTA+AGG | + | chr4.1:75780481-75780500 | MS.gene87527:CDS | 30.0% |
| ! | ATCATTGATCTATAGCTTTG+TGG | + | chr4.1:75779128-75779147 | MS.gene87527:CDS | 30.0% |
| ! | ATTTTCTTGTTGATGCCTTA+GGG | + | chr4.1:75782196-75782215 | MS.gene87527:intron | 30.0% |
| ! | CAACATCTGAGATATTTACT+TGG | + | chr4.1:75779589-75779608 | MS.gene87527:intron | 30.0% |
| ! | GACAGTAGGTTTTCAAAATT+GGG | - | chr4.1:75781672-75781691 | None:intergenic | 30.0% |
| ! | GGTTCTTCAATCTAAAATGT+AGG | - | chr4.1:75780841-75780860 | None:intergenic | 30.0% |
| ! | TATGATGGAAAATATCGACA+AGG | + | chr4.1:75780761-75780780 | MS.gene87527:CDS | 30.0% |
| ! | TCTTTTGCCTTGAAACTTAA+CGG | + | chr4.1:75781299-75781318 | MS.gene87527:intron | 30.0% |
| ! | TGAACTTGTTTCATGATTAG+TGG | + | chr4.1:75780402-75780421 | MS.gene87527:intron | 30.0% |
| ! | TTTGAAACTCTAGCACTATT+GGG | + | chr4.1:75782337-75782356 | MS.gene87527:intron | 30.0% |
| ! | TTTTATTCTTTCACACGACA+CGG | + | chr4.1:75781154-75781173 | MS.gene87527:intron | 30.0% |
| !! | AATTTTGAAAACCTACTGTC+CGG | + | chr4.1:75781672-75781691 | MS.gene87527:intron | 30.0% |
| !!! | AAATGTAGGTGCTATTTTGT+TGG | - | chr4.1:75780827-75780846 | None:intergenic | 30.0% |
| !!! | GATACGAGTCAATTTTAACT+CGG | + | chr4.1:75781068-75781087 | MS.gene87527:intron | 30.0% |
| !!! | TAAAGTTTTGGATGGAGTTA+TGG | + | chr4.1:75782116-75782135 | MS.gene87527:intron | 30.0% |
| !!! | TTTTGAAACTCTAGCACTAT+TGG | + | chr4.1:75782336-75782355 | MS.gene87527:intron | 30.0% |
| AAGTATTTCGTCAGACATGT+GGG | + | chr4.1:75781342-75781361 | MS.gene87527:intron | 35.0% | |
| AGGTTTACTTACAATTGCGA+TGG | + | chr4.1:75779249-75779268 | MS.gene87527:CDS | 35.0% | |
| ATTAACTAGGGTTCGAACTT+AGG | + | chr4.1:75779410-75779429 | MS.gene87527:intron | 35.0% | |
| CATCCAATAATAGAAGTGGA+CGG | - | chr4.1:75779768-75779787 | None:intergenic | 35.0% | |
| CTAAAGAATATCTGGCATCT+AGG | + | chr4.1:75781410-75781429 | MS.gene87527:intron | 35.0% | |
| GAAAATCCATGCAAAATCGT+AGG | + | chr4.1:75781018-75781037 | MS.gene87527:intron | 35.0% | |
| GTTATGGTGTCTAAATCTCT+TGG | + | chr4.1:75782132-75782151 | MS.gene87527:intron | 35.0% | |
| GTTATTTGCAGGTTATTGAC+AGG | + | chr4.1:75781789-75781808 | MS.gene87527:intron | 35.0% | |
| TAAGTATTTCGTCAGACATG+TGG | + | chr4.1:75781341-75781360 | MS.gene87527:intron | 35.0% | |
| TAAGTGACCGTTAAGTTTCA+AGG | - | chr4.1:75781309-75781328 | None:intergenic | 35.0% | |
| TAGGTGGAACAATAACTAGT+TGG | + | chr4.1:75779850-75779869 | MS.gene87527:intron | 35.0% | |
| TATTTATAGAACCGGATCAC+AGG | - | chr4.1:75781117-75781136 | None:intergenic | 35.0% | |
| TATTTGCAGGTTATTGACAG+GGG | + | chr4.1:75781791-75781810 | MS.gene87527:intron | 35.0% | |
| TGAAGTCAAAGGAGTTATGA+TGG | + | chr4.1:75780746-75780765 | MS.gene87527:CDS | 35.0% | |
| TGAGCAATGTATAAGGTCAA+TGG | + | chr4.1:75779812-75779831 | MS.gene87527:intron | 35.0% | |
| ! | ATCTAGGCTTGAGTATTTTG+TGG | + | chr4.1:75781426-75781445 | MS.gene87527:intron | 35.0% |
| ! | ATGCTTTAGACCAAAGTTGA+AGG | + | chr4.1:75780653-75780672 | MS.gene87527:intron | 35.0% |
| ! | ATTGGGATTTAGCTTCATGT+TGG | - | chr4.1:75781655-75781674 | None:intergenic | 35.0% |
| ! | CAAAATCCTACGATTTTGCA+TGG | - | chr4.1:75781027-75781046 | None:intergenic | 35.0% |
| ! | GCAAAATCGTAGGATTTTGA+AGG | + | chr4.1:75781028-75781047 | MS.gene87527:intron | 35.0% |
| ! | GGACAGTAGGTTTTCAAAAT+TGG | - | chr4.1:75781673-75781692 | None:intergenic | 35.0% |
| ! | TATCGATATTGTCACTTGGT+TGG | - | chr4.1:75779388-75779407 | None:intergenic | 35.0% |
| ! | TTTCTTTGTGATTTGCATCG+AGG | + | chr4.1:75781245-75781264 | MS.gene87527:intron | 35.0% |
| !! | AGTTGTTCGTGAGTTTTATG+TGG | + | chr4.1:75779440-75779459 | MS.gene87527:intron | 35.0% |
| AACTTCCTGCTTCTAACAAC+AGG | + | chr4.1:75779229-75779248 | MS.gene87527:CDS | 40.0% | |
| ACCACATCTTTCTTCTCAAC+TGG | - | chr4.1:75782522-75782541 | None:intergenic | 40.0% | |
| ACTCACACTTGAACCAAACA+AGG | - | chr4.1:75782026-75782045 | None:intergenic | 40.0% | |
| ACTCGGTTCATCAATTGATC+TGG | + | chr4.1:75781085-75781104 | MS.gene87527:intron | 40.0% | |
| ATGGTCCAAACTTGGCTAAT+AGG | + | chr4.1:75779831-75779850 | MS.gene87527:intron | 40.0% | |
| ATTGTTCTTTCTGTGTGCCA+TGG | + | chr4.1:75782601-75782620 | MS.gene87527:CDS | 40.0% | |
| CCACATCTTTCTTCTCAACT+GGG | - | chr4.1:75782521-75782540 | None:intergenic | 40.0% | |
| CCACCATCCAATAATAGAAG+TGG | - | chr4.1:75779772-75779791 | None:intergenic | 40.0% | |
| CCACTTCTATTATTGGATGG+TGG | + | chr4.1:75779769-75779788 | MS.gene87527:intron | 40.0% | |
| CGTCCACTTCTATTATTGGA+TGG | + | chr4.1:75779766-75779785 | MS.gene87527:intron | 40.0% | |
| GCAATATTGTGTGGAACATC+CGG | + | chr4.1:75780683-75780702 | MS.gene87527:CDS | 40.0% | |
| GGAGCAAATGCAATATTGTG+TGG | + | chr4.1:75780674-75780693 | MS.gene87527:CDS | 40.0% | |
| GTAAACCTGTTGTTAGAAGC+AGG | - | chr4.1:75779237-75779256 | None:intergenic | 40.0% | |
| TAAGGTCAATGGTCCAAACT+TGG | + | chr4.1:75779823-75779842 | MS.gene87527:intron | 40.0% | |
| TACTGAATCCATTATCGACG+AGG | - | chr4.1:75779290-75779309 | None:intergenic | 40.0% | |
| TGCATTTGCTCCTTCAACTT+TGG | - | chr4.1:75780666-75780685 | None:intergenic | 40.0% | |
| TGGGACTAACTCAATGATTC+AGG | - | chr4.1:75782162-75782181 | None:intergenic | 40.0% | |
| TTCCACCTATTAGCCAAGTT+TGG | - | chr4.1:75779839-75779858 | None:intergenic | 40.0% | |
| TTGAAGACACTGGAAAGCTA+TGG | - | chr4.1:75779208-75779227 | None:intergenic | 40.0% | |
| ! | GCAAAGCACCTAAACATACA+CGG | - | chr4.1:75781701-75781720 | None:intergenic | 40.0% |
| ! | GGATTTAGCTTCATGTTGGA+AGG | - | chr4.1:75781651-75781670 | None:intergenic | 40.0% |
| ! | TTGTTTGGTTCAAGTGTGAG+TGG | + | chr4.1:75782025-75782044 | MS.gene87527:intron | 40.0% |
| !! | AGAGAAGATTGAGGTTTTGG+TGG | + | chr4.1:75781814-75781833 | MS.gene87527:CDS | 40.0% |
| !! | CAGGAAGTTTTTGAAGACAC+TGG | - | chr4.1:75779218-75779237 | None:intergenic | 40.0% |
| !! | GCTCAAGTTTCTGAAGTCAA+AGG | + | chr4.1:75780735-75780754 | MS.gene87527:CDS | 40.0% |
| AAGACACTGGAAAGCTATGG+TGG | - | chr4.1:75779205-75779224 | None:intergenic | 45.0% | |
| ACCTAAACATACACGGACAC+CGG | - | chr4.1:75781694-75781713 | None:intergenic | 45.0% | |
| ACTCGAATGACGTCCTTGTT+TGG | + | chr4.1:75782010-75782029 | MS.gene87527:intron | 45.0% | |
| AGCTTACTGTGTTGTAGCAG+TGG | + | chr4.1:75780433-75780452 | MS.gene87527:intron | 45.0% | |
| ATATTGTGTGGAACATCCGG+AGG | + | chr4.1:75780686-75780705 | MS.gene87527:CDS | 45.0% | |
| ATTATCGACGAGGAAGCTGA+AGG | - | chr4.1:75779280-75779299 | None:intergenic | 45.0% | |
| CCCAGTTGAGAAGAAAGATG+TGG | + | chr4.1:75782518-75782537 | MS.gene87527:CDS | 45.0% | |
| GGACCGTCCACTTCTATTAT+TGG | + | chr4.1:75779762-75779781 | MS.gene87527:intron | 45.0% | |
| GTCCAAACTTGGCTAATAGG+TGG | + | chr4.1:75779834-75779853 | MS.gene87527:intron | 45.0% | |
| TCTGCACAAGAGATTGACGA+AGG | + | chr4.1:75781179-75781198 | MS.gene87527:intron | 45.0% | |
| TTCAGCTTCCTCGTCGATAA+TGG | + | chr4.1:75779279-75779298 | MS.gene87527:CDS | 45.0% | |
| TTGAAATGGTATGGCTGTGC+AGG | + | chr4.1:75782471-75782490 | MS.gene87527:intron | 45.0% | |
| ! | AGGCGAACGTGTTGATATGA+TGG | + | chr4.1:75781199-75781218 | MS.gene87527:intron | 45.0% |
| ! | GGGAGAGAAGATTGAGGTTT+TGG | + | chr4.1:75781811-75781830 | MS.gene87527:CDS | 45.0% |
| ! | TCTGGTTTGTACCTGTGATC+CGG | + | chr4.1:75781103-75781122 | MS.gene87527:intron | 45.0% |
| !! | ATCTATAGCTTTGTGGCTCG+TGG | + | chr4.1:75779135-75779154 | MS.gene87527:CDS | 45.0% |
| !! | GCAAGTTTGCTAACTTCCTC+CGG | - | chr4.1:75780705-75780724 | None:intergenic | 45.0% |
| !! | TATATTTAATTAATGTTTAA+TGG | + | chr4.1:75779881-75779900 | MS.gene87527:intron | 5.0% |
| !! | TTTACAAAAAAAAAAAAATA+AGG | + | chr4.1:75779481-75779500 | MS.gene87527:intron | 5.0% |
| !!! | TAAAAATAAAATATGATTTT+AGG | + | chr4.1:75779957-75779976 | MS.gene87527:intron | 5.0% |
| AACTGAGAACCTTCGCTCTC+AGG | + | chr4.1:75781841-75781860 | MS.gene87527:CDS | 50.0% | |
| AGCATCTAACCTGAGAGCGA+AGG | - | chr4.1:75781853-75781872 | None:intergenic | 50.0% | |
| CTGTGCAGGCACAAGATTTC+AGG | + | chr4.1:75782485-75782504 | MS.gene87527:intron | 50.0% | |
| GCACAAGATTTCAGGCAGCA+GGG | + | chr4.1:75782493-75782512 | MS.gene87527:CDS | 50.0% | |
| GCTGTACTCCGCAAGAATCA+CGG | - | chr4.1:75779163-75779182 | None:intergenic | 50.0% | |
| GCTTGAACCAGTGAACCCTA+AGG | - | chr4.1:75782214-75782233 | None:intergenic | 50.0% | |
| GTTGATGCCTTAGGGTTCAC+TGG | + | chr4.1:75782204-75782223 | MS.gene87527:intron | 50.0% | |
| GTTGTAGCAGTGGAGTCTGT+TGG | + | chr4.1:75780443-75780462 | MS.gene87527:CDS | 50.0% | |
| TCCGGTGTCCGTGTATGTTT+AGG | + | chr4.1:75781690-75781709 | MS.gene87527:intron | 50.0% | |
| TCGTGGTACCGTGATTCTTG+CGG | + | chr4.1:75779152-75779171 | MS.gene87527:CDS | 50.0% | |
| TGACAGGGGAGAGAAGATTG+AGG | + | chr4.1:75781805-75781824 | MS.gene87527:CDS | 50.0% | |
| ATACACGGACACCGGACAGT+AGG | - | chr4.1:75781686-75781705 | None:intergenic | 55.0% | |
| GGCACAAGATTTCAGGCAGC+AGG | + | chr4.1:75782492-75782511 | MS.gene87527:intron | 55.0% | |
| GCGGAGTACAGCGACTTCAC+AGG | + | chr4.1:75779171-75779190 | MS.gene87527:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 75779117 | 75782636 | 75779117 | ID=MS.gene87527 |
| chr4.1 | mRNA | 75779117 | 75782636 | 75779117 | ID=MS.gene87527.t1;Parent=MS.gene87527 |
| chr4.1 | exon | 75779117 | 75779306 | 75779117 | ID=MS.gene87527.t1.exon1;Parent=MS.gene87527.t1 |
| chr4.1 | CDS | 75779117 | 75779306 | 75779117 | ID=cds.MS.gene87527.t1;Parent=MS.gene87527.t1 |
| chr4.1 | exon | 75780435 | 75780576 | 75780435 | ID=MS.gene87527.t1.exon2;Parent=MS.gene87527.t1 |
| chr4.1 | CDS | 75780435 | 75780576 | 75780435 | ID=cds.MS.gene87527.t1;Parent=MS.gene87527.t1 |
| chr4.1 | exon | 75780662 | 75780782 | 75780662 | ID=MS.gene87527.t1.exon3;Parent=MS.gene87527.t1 |
| chr4.1 | CDS | 75780662 | 75780782 | 75780662 | ID=cds.MS.gene87527.t1;Parent=MS.gene87527.t1 |
| chr4.1 | exon | 75781800 | 75781862 | 75781800 | ID=MS.gene87527.t1.exon4;Parent=MS.gene87527.t1 |
| chr4.1 | CDS | 75781800 | 75781862 | 75781800 | ID=cds.MS.gene87527.t1;Parent=MS.gene87527.t1 |
| chr4.1 | exon | 75782493 | 75782636 | 75782493 | ID=MS.gene87527.t1.exon5;Parent=MS.gene87527.t1 |
| chr4.1 | CDS | 75782493 | 75782636 | 75782493 | ID=cds.MS.gene87527.t1;Parent=MS.gene87527.t1 |
| Gene Sequence |
| Protein sequence |
