Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87746.t1 | XP_003623570.1 | 93.3 | 571 | 18 | 3 | 1 | 552 | 1 | 570 | 8.10E-250 | 872.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87746.t1 | F4ISY0 | 44.1 | 522 | 204 | 13 | 14 | 504 | 6 | 470 | 3.8e-54 | 214.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87746.t1 | G7KX28 | 93.3 | 571 | 18 | 3 | 1 | 552 | 1 | 570 | 5.9e-250 | 872.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene87746 | 0.813273 | 2.78E-51 | -1.69E-46 |
| MS.gene05157 | MS.gene87746 | 0.803973 | 2.70E-49 | -1.69E-46 |
| MS.gene055890 | MS.gene87746 | 0.811941 | 5.44E-51 | -1.69E-46 |
| MS.gene061176 | MS.gene87746 | 0.809207 | 2.12E-50 | -1.69E-46 |
| MS.gene061177 | MS.gene87746 | 0.808636 | 2.81E-50 | -1.69E-46 |
| MS.gene061178 | MS.gene87746 | 0.809074 | 2.26E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87746.t1 | MTR_7g072550 | 93.345 | 571 | 18 | 3 | 1 | 552 | 1 | 570 | 0.0 | 1048 |
| MS.gene87746.t1 | MTR_4g029090 | 63.653 | 553 | 145 | 12 | 12 | 534 | 11 | 537 | 0.0 | 575 |
| MS.gene87746.t1 | MTR_5g083980 | 35.560 | 554 | 276 | 13 | 26 | 544 | 27 | 534 | 5.47e-66 | 224 |
| MS.gene87746.t1 | MTR_3g072350 | 34.175 | 594 | 280 | 14 | 26 | 544 | 21 | 578 | 8.79e-66 | 224 |
| MS.gene87746.t1 | MTR_3g072350 | 35.744 | 484 | 239 | 7 | 26 | 441 | 21 | 500 | 7.81e-61 | 209 |
| MS.gene87746.t1 | MTR_3g101660 | 31.047 | 277 | 187 | 2 | 158 | 430 | 595 | 871 | 1.06e-25 | 112 |
| MS.gene87746.t1 | MTR_1g019490 | 29.710 | 276 | 166 | 5 | 158 | 416 | 576 | 840 | 3.36e-19 | 92.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87746.t1 | AT2G38370 | 42.086 | 556 | 233 | 14 | 14 | 537 | 6 | 504 | 1.01e-102 | 319 |
| MS.gene87746.t1 | AT2G38370 | 42.086 | 556 | 233 | 14 | 14 | 537 | 23 | 521 | 1.14e-102 | 320 |
| MS.gene87746.t1 | AT2G40480 | 34.579 | 535 | 261 | 12 | 26 | 544 | 54 | 515 | 1.32e-59 | 206 |
| MS.gene87746.t1 | AT3G51720 | 34.783 | 529 | 180 | 19 | 26 | 537 | 8 | 388 | 2.82e-56 | 194 |
| MS.gene87746.t1 | AT3G56270 | 32.151 | 423 | 209 | 10 | 52 | 468 | 70 | 420 | 1.07e-31 | 127 |
| MS.gene87746.t1 | AT2G26570 | 32.526 | 289 | 183 | 4 | 149 | 426 | 453 | 740 | 1.73e-26 | 114 |
| MS.gene87746.t1 | AT2G26570 | 41.284 | 109 | 50 | 3 | 11 | 105 | 145 | 253 | 9.36e-12 | 68.6 |
| MS.gene87746.t1 | AT2G26570 | 32.526 | 289 | 183 | 4 | 149 | 426 | 453 | 740 | 1.73e-26 | 114 |
| MS.gene87746.t1 | AT2G26570 | 41.284 | 109 | 50 | 3 | 11 | 105 | 145 | 253 | 9.36e-12 | 68.6 |
| MS.gene87746.t1 | AT5G42880 | 33.203 | 256 | 157 | 4 | 175 | 416 | 413 | 668 | 4.25e-19 | 91.7 |
| MS.gene87746.t1 | AT4G33390 | 32.210 | 267 | 177 | 2 | 158 | 420 | 460 | 726 | 7.42e-19 | 90.9 |
| MS.gene87746.t1 | AT1G45545 | 28.185 | 259 | 161 | 2 | 158 | 414 | 444 | 679 | 1.30e-15 | 80.5 |
| MS.gene87746.t1 | AT1G45545 | 28.185 | 259 | 161 | 2 | 158 | 414 | 443 | 678 | 1.35e-15 | 80.5 |
Find 94 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAGTTGAAGAGGCTTTA+AGG | 0.138410 | 7.1:-29658737 | MS.gene87746:CDS |
| ATTCGGTTACTTGATGTAAA+TGG | 0.201330 | 7.1:-29658624 | MS.gene87746:CDS |
| TTCTTCAAGGGCCTTCTTGC+AGG | 0.218507 | 7.1:+29658797 | None:intergenic |
| TGATGTAAATGGATTGAATT+TGG | 0.242394 | 7.1:-29658613 | MS.gene87746:CDS |
| GGCAATATCATGAGTAGTTT+TGG | 0.272866 | 7.1:+29659430 | None:intergenic |
| TCTGCTAAGAGAAAGAAATT+TGG | 0.281302 | 7.1:-29658366 | MS.gene87746:CDS |
| TGCCACTTGCAGTCTTAATC+TGG | 0.293211 | 7.1:+29659277 | None:intergenic |
| CTGCTAAGAGAAAGAAATTT+GGG | 0.308164 | 7.1:-29658365 | MS.gene87746:CDS |
| TGATAAGAACTGCCGAAATT+AGG | 0.313654 | 7.1:-29659109 | MS.gene87746:CDS |
| CTTGCAGTCTTAATCTGGTT+TGG | 0.345195 | 7.1:+29659282 | None:intergenic |
| CCCTTTGTAGAGCTTCTTCA+AGG | 0.349108 | 7.1:+29658784 | None:intergenic |
| TGCCGCAACCAACCTAATTT+CGG | 0.360596 | 7.1:+29659097 | None:intergenic |
| GTGGCAAAAGGTGCTGCTTC+TGG | 0.361274 | 7.1:-29659260 | MS.gene87746:CDS |
| CGCTTCTGCATACACTCTTC+TGG | 0.362210 | 7.1:+29658993 | None:intergenic |
| TTCTCCAGACTTGATACTAA+TGG | 0.384913 | 7.1:-29659480 | MS.gene87746:CDS |
| GAGCAAACTGAGAAAGAAAA+TGG | 0.397534 | 7.1:-29658405 | MS.gene87746:CDS |
| GATAGAGTCGGCTTTAAAAC+AGG | 0.402456 | 7.1:+29658573 | None:intergenic |
| TTTGGTTTAGCTCTTCTTCA+AGG | 0.406542 | 7.1:+29659300 | None:intergenic |
| AGTTCTGCTGTAACATCTAT+AGG | 0.410243 | 7.1:+29659233 | None:intergenic |
| ATCGGTTCTTCAAACTCTTC+TGG | 0.412083 | 7.1:+29658516 | None:intergenic |
| TTAAAGCCGACTCTATCAAT+AGG | 0.421757 | 7.1:-29658567 | MS.gene87746:CDS |
| ACTCTGGTCCATCTGATCAT+AGG | 0.422249 | 7.1:-29658653 | MS.gene87746:CDS |
| CTGAAACAATATTGAATCTC+GGG | 0.430024 | 7.1:-29659619 | MS.gene87746:CDS |
| AATTCCATTAGTATCAAGTC+TGG | 0.436262 | 7.1:+29659476 | None:intergenic |
| GACGACGTATCAAGCTGAAC+CGG | 0.439494 | 7.1:-29661257 | MS.gene87746:CDS |
| ATCTTCAAAGAACAAGATAA+TGG | 0.450459 | 7.1:-29661230 | MS.gene87746:CDS |
| AAGAACTGATCTTAAAAGAA+AGG | 0.452126 | 7.1:-29659724 | MS.gene87746:CDS |
| AAACAGCAGAAGGTGTCATT+AGG | 0.452154 | 7.1:-29658468 | MS.gene87746:CDS |
| GCTTCTTTCACAGATTCAAA+TGG | 0.467986 | 7.1:+29661175 | None:intergenic |
| TCTGAAACAATATTGAATCT+CGG | 0.479141 | 7.1:-29659620 | MS.gene87746:CDS |
| TGTAGATGAGAAAGAAGTAA+AGG | 0.480056 | 7.1:-29659570 | MS.gene87746:CDS |
| ATAAGAAATTAGAGAAAGAA+AGG | 0.483070 | 7.1:-29659379 | MS.gene87746:CDS |
| AGAACTGATCTTAAAAGAAA+GGG | 0.491872 | 7.1:-29659723 | MS.gene87746:CDS |
| CTGATCATAGGAGAGATATT+CGG | 0.493121 | 7.1:-29658641 | MS.gene87746:CDS |
| AAAGAAGCTGTTAACCGCTT+CGG | 0.493823 | 7.1:-29661160 | MS.gene87746:CDS |
| CAAGGAGAAACTAGAGGAGC+AGG | 0.495153 | 7.1:-29659762 | MS.gene87746:CDS |
| CCTTGTCAAGCTCTTCTATG+TGG | 0.495621 | 7.1:+29659780 | None:intergenic |
| TTGAAGAGGCTTTAAGGAAG+TGG | 0.497849 | 7.1:-29658731 | MS.gene87746:CDS |
| AGTCGGCTTTAAAACAGGCT+TGG | 0.498226 | 7.1:+29658578 | None:intergenic |
| TGCCGAAATTAGGTTGGTTG+CGG | 0.498655 | 7.1:-29659099 | MS.gene87746:CDS |
| AGGGTAGAGGCTGCAGATAG+AGG | 0.502926 | 7.1:-29658765 | MS.gene87746:CDS |
| AGGGAAGTTAGAAGTTGAAG+AGG | 0.506157 | 7.1:-29658745 | MS.gene87746:CDS |
| ATTCACCTCAAGTTCAGCAT+TGG | 0.508102 | 7.1:+29658291 | None:intergenic |
| GGGTAGAGGCTGCAGATAGA+GGG | 0.517190 | 7.1:-29658764 | MS.gene87746:CDS |
| AGAGGAGCAGGCAAGAGCGT+TGG | 0.517338 | 7.1:-29659750 | MS.gene87746:CDS |
| CAATAGGACAAATACTGAGC+AGG | 0.522093 | 7.1:-29658551 | MS.gene87746:CDS |
| GATACTAATGGAATTGAAGC+AGG | 0.525759 | 7.1:-29659468 | MS.gene87746:CDS |
| TTAAGACTGCAAGTGGCAAA+AGG | 0.531244 | 7.1:-29659272 | MS.gene87746:CDS |
| TGAAGCAAATTCTTCGCAGA+TGG | 0.542868 | 7.1:-29658862 | MS.gene87746:CDS |
| TCAGTTTGCTCGTCAAACAA+TGG | 0.549642 | 7.1:+29658417 | None:intergenic |
| AAGAACTGCCGAAATTAGGT+TGG | 0.552434 | 7.1:-29659105 | MS.gene87746:CDS |
| ATTTGTCCTATTGATAGAGT+CGG | 0.552627 | 7.1:+29658561 | None:intergenic |
| CGGCCTCTGAACTCAATCGA+TGG | 0.552819 | 7.1:+29659210 | None:intergenic |
| CCTTTGTAGAGCTTCTTCAA+GGG | 0.554451 | 7.1:+29658785 | None:intergenic |
| GAACCTCAGACGGACTCGAT+TGG | 0.556300 | 7.1:+29659543 | None:intergenic |
| TTTGAAGAACCGATGGTGCA+TGG | 0.559513 | 7.1:-29658507 | MS.gene87746:CDS |
| AACCAGATTAAGACTGCAAG+TGG | 0.562004 | 7.1:-29659279 | MS.gene87746:CDS |
| TGAGGTTCTTCAACTCATGA+AGG | 0.562375 | 7.1:-29659528 | MS.gene87746:CDS |
| ACTCTTCTGGTGTACCCTCA+TGG | 0.563422 | 7.1:+29659006 | None:intergenic |
| ATATCTCTCCTATGATCAGA+TGG | 0.563474 | 7.1:+29658645 | None:intergenic |
| TTGTTCTTTGAAGATGAACC+CGG | 0.563644 | 7.1:+29661238 | None:intergenic |
| CAATGCGTTAATTTCTGCAA+GGG | 0.572501 | 7.1:+29659034 | None:intergenic |
| TTCAACAGTAGCTCGTACAT+CGG | 0.575007 | 7.1:+29659409 | None:intergenic |
| TTAAGGAAGTGGCGATCTGA+CGG | 0.579749 | 7.1:-29658720 | MS.gene87746:CDS |
| AGAAGTTCAAACCTGCAAGA+AGG | 0.580057 | 7.1:-29658808 | MS.gene87746:CDS |
| CCTTGAAGAAGCTCTACAAA+GGG | 0.582325 | 7.1:-29658784 | MS.gene87746:CDS |
| TTTGAAATCAAAGCTGCAGA+AGG | 0.585814 | 7.1:-29659648 | MS.gene87746:CDS |
| GTGTCATTAGGTCATATGCT+TGG | 0.589947 | 7.1:-29658456 | MS.gene87746:CDS |
| CCCTTGAAGAAGCTCTACAA+AGG | 0.590773 | 7.1:-29658785 | MS.gene87746:CDS |
| ATGAGTTGAAGAACCTCAGA+CGG | 0.594605 | 7.1:+29659533 | None:intergenic |
| ACAATGCGTTAATTTCTGCA+AGG | 0.601615 | 7.1:+29659033 | None:intergenic |
| AGAAACCAATGCTGAACTTG+AGG | 0.604096 | 7.1:-29658296 | MS.gene87746:CDS |
| AGAAGCTCTACAAAGGGTAG+AGG | 0.607835 | 7.1:-29658778 | MS.gene87746:CDS |
| ACTATTTCTCCATGCACCAT+CGG | 0.609425 | 7.1:+29658498 | None:intergenic |
| ACGACGTATCAAGCTGAACC+GGG | 0.613614 | 7.1:-29661256 | MS.gene87746:CDS |
| TCGTAAAGCTCGAGAAGCAG+AGG | 0.613922 | 7.1:-29658928 | MS.gene87746:CDS |
| GGTTGCGGCAAGGAAAATGA+AGG | 0.614865 | 7.1:-29659084 | MS.gene87746:CDS |
| AAATTAGGTTGGTTGCGGCA+AGG | 0.614952 | 7.1:-29659094 | MS.gene87746:CDS |
| GAAGCTGTTAACCGCTTCGG+TGG | 0.621394 | 7.1:-29661157 | MS.gene87746:CDS |
| AAACCAATCGAGTCCGTCTG+AGG | 0.623782 | 7.1:-29659546 | MS.gene87746:CDS |
| AACGCATTGTCTAGCCATGA+GGG | 0.624553 | 7.1:-29659020 | MS.gene87746:CDS |
| TAACGCATTGTCTAGCCATG+AGG | 0.637064 | 7.1:-29659021 | MS.gene87746:CDS |
| AGAAGAGTTTGAAGAACCGA+TGG | 0.638252 | 7.1:-29658514 | MS.gene87746:CDS |
| TCAAGTCTGGAGAAGATACA+CGG | 0.640414 | 7.1:+29659489 | None:intergenic |
| CACTTGAGAAAACCCGTGAG+AGG | 0.664946 | 7.1:-29659352 | MS.gene87746:CDS |
| AGTAGCCAACACCACCGAAG+CGG | 0.669268 | 7.1:+29661146 | None:intergenic |
| CCACATAGAAGAGCTTGACA+AGG | 0.669604 | 7.1:-29659780 | MS.gene87746:CDS |
| GGTGCATGGAGAAATAGTCT+CGG | 0.669815 | 7.1:-29658493 | MS.gene87746:CDS |
| ACTCCATCGATTGAGTTCAG+AGG | 0.670068 | 7.1:-29659213 | MS.gene87746:CDS |
| CAAGTCTGGAGAAGATACAC+GGG | 0.678628 | 7.1:+29659490 | None:intergenic |
| GCTTGACAAGGAGAAACTAG+AGG | 0.679130 | 7.1:-29659768 | MS.gene87746:CDS |
| AGTCTCGGTGAAACAGCAGA+AGG | 0.690368 | 7.1:-29658478 | MS.gene87746:CDS |
| TCTGGAGAAGATACACGGGA+AGG | 0.691888 | 7.1:+29659494 | None:intergenic |
| AGAGTGTATGCAGAAGCGCG+AGG | 0.725141 | 7.1:-29658988 | MS.gene87746:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATATATATATATAT+AGG | + | chr7.1:29658562-29658543 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+GGG | - | chr7.1:29658543-29658562 | MS.gene87746:CDS | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr7.1:29658561-29658542 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | - | chr7.1:29658542-29658561 | MS.gene87746:CDS | 0.0% |
| !! | TATATATATACATAGAGAAA+TGG | - | chr7.1:29659068-29659087 | MS.gene87746:CDS | 15.0% |
| !!! | AATTGACATTTTTTCATTTT+GGG | + | chr7.1:29659505-29659524 | None:intergenic | 15.0% |
| !!! | ATTTGTTGCATTTTATTTTA+TGG | - | chr7.1:29658895-29658914 | MS.gene87746:CDS | 15.0% |
| !!! | ATTTTGTTTTCAAAATTTTG+GGG | - | chr7.1:29659603-29659622 | MS.gene87746:CDS | 15.0% |
| !!! | GATTTTGTTTTCAAAATTTT+GGG | - | chr7.1:29659602-29659621 | MS.gene87746:CDS | 15.0% |
| !!! | TTTGTTGCATTTTATTTTAT+GGG | - | chr7.1:29658896-29658915 | MS.gene87746:CDS | 15.0% |
| !! | AAACTATTTGTGTGATTAAT+TGG | - | chr7.1:29658927-29658946 | MS.gene87746:CDS | 20.0% |
| !! | ATAAGAAATTAGAGAAAGAA+AGG | - | chr7.1:29660194-29660213 | MS.gene87746:intron | 20.0% |
| !! | TTAACTTAACGTATATAGAA+TGG | + | chr7.1:29659368-29659387 | None:intergenic | 20.0% |
| !!! | AAAGTATTGGTATAAGATAT+GGG | - | chr7.1:29659649-29659668 | MS.gene87746:CDS | 20.0% |
| !!! | CGATTTTGTTTTCAAAATTT+TGG | - | chr7.1:29659601-29659620 | MS.gene87746:CDS | 20.0% |
| !!! | GAATTGACATTTTTTCATTT+TGG | + | chr7.1:29659506-29659525 | None:intergenic | 20.0% |
| !!! | TTTTAAAACTTCTGATTTTG+CGG | + | chr7.1:29660413-29660432 | None:intergenic | 20.0% |
| ! | AAGAACTGATCTTAAAAGAA+AGG | - | chr7.1:29659849-29659868 | MS.gene87746:intron | 25.0% |
| ! | AGAACTGATCTTAAAAGAAA+GGG | - | chr7.1:29659850-29659869 | MS.gene87746:intron | 25.0% |
| ! | ATCTTCAAAGAACAAGATAA+TGG | - | chr7.1:29658343-29658362 | MS.gene87746:CDS | 25.0% |
| ! | GAAAACAAAATCGATATGTT+TGG | + | chr7.1:29659594-29659613 | None:intergenic | 25.0% |
| ! | TATAGTTACATTGTTTGTGA+AGG | - | chr7.1:29659332-29659351 | MS.gene87746:CDS | 25.0% |
| ! | TGTATGAAGTTTAAAAACTC+TGG | - | chr7.1:29660904-29660923 | MS.gene87746:intron | 25.0% |
| !! | TCTGAAACAATATTGAATCT+CGG | - | chr7.1:29659953-29659972 | MS.gene87746:intron | 25.0% |
| !! | TGATATGTATCTGAAAGTAT+TGG | - | chr7.1:29659636-29659655 | MS.gene87746:CDS | 25.0% |
| !!! | AAAATTTTGTTTTGAGTGCT+AGG | - | chr7.1:29659010-29659029 | MS.gene87746:CDS | 25.0% |
| !!! | AAATTTTGTTTTGAGTGCTA+GGG | - | chr7.1:29659011-29659030 | MS.gene87746:CDS | 25.0% |
| !!! | ATTGCAAATTTGTTACATTC+AGG | + | chr7.1:29659150-29659169 | None:intergenic | 25.0% |
| !!! | ATTTTGATGTTCAGATAACA+CGG | - | chr7.1:29659248-29659267 | MS.gene87746:CDS | 25.0% |
| !!! | GAAAGTATTGGTATAAGATA+TGG | - | chr7.1:29659648-29659667 | MS.gene87746:CDS | 25.0% |
| !!! | GACTATCAAAATTTTGATAC+CGG | - | chr7.1:29659097-29659116 | MS.gene87746:CDS | 25.0% |
| !!! | TGATGTAAATGGATTGAATT+TGG | - | chr7.1:29660960-29660979 | MS.gene87746:intron | 25.0% |
| AAAGTGAAAATCACACCTTA+AGG | - | chr7.1:29658719-29658738 | MS.gene87746:CDS | 30.0% | |
| AATTCCATTAGTATCAAGTC+TGG | + | chr7.1:29660100-29660119 | None:intergenic | 30.0% | |
| ACACCTTCATAAAAGTAAGT+TGG | + | chr7.1:29658677-29658696 | None:intergenic | 30.0% | |
| ACATTTGTGACATACATACT+TGG | + | chr7.1:29659473-29659492 | None:intergenic | 30.0% | |
| AGAGATGAAAGATTGTGAAA+GGG | + | chr7.1:29658458-29658477 | None:intergenic | 30.0% | |
| ATAAAAGACACCTTCACAAA+AGG | + | chr7.1:29658622-29658641 | None:intergenic | 30.0% | |
| ATACATAGAGAAATGGTGTT+TGG | - | chr7.1:29659075-29659094 | MS.gene87746:CDS | 30.0% | |
| ATGACGAATGTTGGAAAATT+TGG | - | chr7.1:29659281-29659300 | MS.gene87746:CDS | 30.0% | |
| ATTCGGTTACTTGATGTAAA+TGG | - | chr7.1:29660949-29660968 | MS.gene87746:intron | 30.0% | |
| ATTTGTCCTATTGATAGAGT+CGG | + | chr7.1:29661015-29661034 | None:intergenic | 30.0% | |
| CTATTTGTGTGATTAATTGG+TGG | - | chr7.1:29658930-29658949 | MS.gene87746:CDS | 30.0% | |
| CTGAAACAATATTGAATCTC+GGG | - | chr7.1:29659954-29659973 | MS.gene87746:intron | 30.0% | |
| CTGCTAAGAGAAAGAAATTT+GGG | - | chr7.1:29661208-29661227 | MS.gene87746:CDS | 30.0% | |
| TCACACAAATAGTTTCAACT+AGG | + | chr7.1:29658922-29658941 | None:intergenic | 30.0% | |
| TCTGCTAAGAGAAAGAAATT+TGG | - | chr7.1:29661207-29661226 | MS.gene87746:CDS | 30.0% | |
| TGACGAATGTTGGAAAATTT+GGG | - | chr7.1:29659282-29659301 | MS.gene87746:CDS | 30.0% | |
| TGTAGATGAGAAAGAAGTAA+AGG | - | chr7.1:29660003-29660022 | MS.gene87746:intron | 30.0% | |
| ! | ATCATAAAGTATCATCGAAG+AGG | - | chr7.1:29659564-29659583 | MS.gene87746:CDS | 30.0% |
| ! | CAAATCTTCAACAAGCTTTT+TGG | + | chr7.1:29659909-29659928 | None:intergenic | 30.0% |
| ! | TTTTATCAAGCAACACCTTA+AGG | + | chr7.1:29658737-29658756 | None:intergenic | 30.0% |
| !! | AATTTTGAGTAAACCTCTCA+CGG | + | chr7.1:29660237-29660256 | None:intergenic | 30.0% |
| !! | ACACCAACTTACTTTTATGA+AGG | - | chr7.1:29658671-29658690 | MS.gene87746:CDS | 30.0% |
| !! | GCAGATGGATGTTTTTAAAA+GGG | - | chr7.1:29660726-29660745 | MS.gene87746:intron | 30.0% |
| !! | TGCAATTTTGATGTCGAATA+TGG | - | chr7.1:29659164-29659183 | MS.gene87746:CDS | 30.0% |
| !!! | TATCATGAGTAGTTTTGGTT+AGG | + | chr7.1:29660141-29660160 | None:intergenic | 30.0% |
| !!! | TCTCTTTTTTCTGAAATGCT+CGG | + | chr7.1:29660386-29660405 | None:intergenic | 30.0% |
| !!! | TTTTTTTACAAGACACCCTT+TGG | + | chr7.1:29658767-29658786 | None:intergenic | 30.0% |
| ACAATGCGTTAATTTCTGCA+AGG | + | chr7.1:29660543-29660562 | None:intergenic | 35.0% | |
| AGTTCTGCTGTAACATCTAT+AGG | + | chr7.1:29660343-29660362 | None:intergenic | 35.0% | |
| ATATCTCTCCTATGATCAGA+TGG | + | chr7.1:29660931-29660950 | None:intergenic | 35.0% | |
| ATCTCTCACTTCTCATTCTA+AGG | - | chr7.1:29658472-29658491 | MS.gene87746:CDS | 35.0% | |
| CAATGCGTTAATTTCTGCAA+GGG | + | chr7.1:29660542-29660561 | None:intergenic | 35.0% | |
| CTGATCATAGGAGAGATATT+CGG | - | chr7.1:29660932-29660951 | MS.gene87746:intron | 35.0% | |
| GAGAGATGAAAGATTGTGAA+AGG | + | chr7.1:29658459-29658478 | None:intergenic | 35.0% | |
| GAGCAAACTGAGAAAGAAAA+TGG | - | chr7.1:29661168-29661187 | MS.gene87746:CDS | 35.0% | |
| GATACTAATGGAATTGAAGC+AGG | - | chr7.1:29660105-29660124 | MS.gene87746:intron | 35.0% | |
| GCTTCTTTCACAGATTCAAA+TGG | + | chr7.1:29658401-29658420 | None:intergenic | 35.0% | |
| TAGAAGTTGAAGAGGCTTTA+AGG | - | chr7.1:29660836-29660855 | MS.gene87746:intron | 35.0% | |
| TGATAAAAGACACCACCAAA+GGG | - | chr7.1:29658749-29658768 | MS.gene87746:CDS | 35.0% | |
| TGATAAGAACTGCCGAAATT+AGG | - | chr7.1:29660464-29660483 | MS.gene87746:intron | 35.0% | |
| TGATTGTAGATGACGAATGT+TGG | - | chr7.1:29659272-29659291 | MS.gene87746:CDS | 35.0% | |
| TTCTCCAGACTTGATACTAA+TGG | - | chr7.1:29660093-29660112 | MS.gene87746:intron | 35.0% | |
| TTGATAAAAGACACCACCAA+AGG | - | chr7.1:29658748-29658767 | MS.gene87746:CDS | 35.0% | |
| ! | ATAGAAGACACCTTTTGTGA+AGG | - | chr7.1:29658609-29658628 | MS.gene87746:CDS | 35.0% |
| ! | GGCAATATCATGAGTAGTTT+TGG | + | chr7.1:29660146-29660165 | None:intergenic | 35.0% |
| ! | TTAAAGCCGACTCTATCAAT+AGG | - | chr7.1:29661006-29661025 | MS.gene87746:intron | 35.0% |
| ! | TTGTTCTTTGAAGATGAACC+CGG | + | chr7.1:29658338-29658357 | None:intergenic | 35.0% |
| ! | TTTGAAATCAAAGCTGCAGA+AGG | - | chr7.1:29659925-29659944 | MS.gene87746:intron | 35.0% |
| !! | ATTTTGAGTAAACCTCTCAC+GGG | + | chr7.1:29660236-29660255 | None:intergenic | 35.0% |
| !! | CGCAGATGGATGTTTTTAAA+AGG | - | chr7.1:29660725-29660744 | MS.gene87746:intron | 35.0% |
| !! | GGATGTTTTTAAAAGGGTAG+AGG | - | chr7.1:29660732-29660751 | MS.gene87746:intron | 35.0% |
| !! | TTTGGTTTAGCTCTTCTTCA+AGG | + | chr7.1:29660276-29660295 | None:intergenic | 35.0% |
| !! | TTTTGAGTGCTAGGGTTTTT+AGG | - | chr7.1:29659019-29659038 | MS.gene87746:CDS | 35.0% |
| !!! | AGTTTTGGTTAGGTTCAACT+TGG | + | chr7.1:29660131-29660150 | None:intergenic | 35.0% |
| AAAGAAGCTGTTAACCGCTT+CGG | - | chr7.1:29658413-29658432 | MS.gene87746:CDS | 40.0% | |
| AACCAGATTAAGACTGCAAG+TGG | - | chr7.1:29660294-29660313 | MS.gene87746:intron | 40.0% | |
| AAGAACTGCCGAAATTAGGT+TGG | - | chr7.1:29660468-29660487 | MS.gene87746:intron | 40.0% | |
| AGAAACCAATGCTGAACTTG+AGG | - | chr7.1:29661277-29661296 | MS.gene87746:CDS | 40.0% | |
| AGAAGAGTTTGAAGAACCGA+TGG | - | chr7.1:29661059-29661078 | MS.gene87746:intron | 40.0% | |
| AGAAGTTCAAACCTGCAAGA+AGG | - | chr7.1:29660765-29660784 | MS.gene87746:intron | 40.0% | |
| AGGGAAGTTAGAAGTTGAAG+AGG | - | chr7.1:29660828-29660847 | MS.gene87746:intron | 40.0% | |
| CAATAGGACAAATACTGAGC+AGG | - | chr7.1:29661022-29661041 | MS.gene87746:intron | 40.0% | |
| CCTTGAAGAAGCTCTACAAA+GGG | - | chr7.1:29660789-29660808 | MS.gene87746:intron | 40.0% | |
| CCTTTGTAGAGCTTCTTCAA+GGG | + | chr7.1:29660791-29660810 | None:intergenic | 40.0% | |
| CTTGCAGTCTTAATCTGGTT+TGG | + | chr7.1:29660294-29660313 | None:intergenic | 40.0% | |
| GACCAACTGTCATGAAAATC+TGG | - | chr7.1:29659677-29659696 | MS.gene87746:CDS | 40.0% | |
| TCAAGTCTGGAGAAGATACA+CGG | + | chr7.1:29660087-29660106 | None:intergenic | 40.0% | |
| TGAAGCAAATTCTTCGCAGA+TGG | - | chr7.1:29660711-29660730 | MS.gene87746:intron | 40.0% | |
| TGAGGTTCTTCAACTCATGA+AGG | - | chr7.1:29660045-29660064 | MS.gene87746:intron | 40.0% | |
| TGTGTGTGAATTGTCACGTA+CGG | - | chr7.1:29659218-29659237 | MS.gene87746:CDS | 40.0% | |
| TTAAGACTGCAAGTGGCAAA+AGG | - | chr7.1:29660301-29660320 | MS.gene87746:intron | 40.0% | |
| TTCAACAGTAGCTCGTACAT+CGG | + | chr7.1:29660167-29660186 | None:intergenic | 40.0% | |
| ! | ACTATTTCTCCATGCACCAT+CGG | + | chr7.1:29661078-29661097 | None:intergenic | 40.0% |
| ! | ATCGGTTCTTCAAACTCTTC+TGG | + | chr7.1:29661060-29661079 | None:intergenic | 40.0% |
| ! | ATGAGTTGAAGAACCTCAGA+CGG | + | chr7.1:29660043-29660062 | None:intergenic | 40.0% |
| ! | GTGTCATTAGGTCATATGCT+TGG | - | chr7.1:29661117-29661136 | MS.gene87746:intron | 40.0% |
| ! | GTGTGATTAATTGGTGGCTT+TGG | - | chr7.1:29658936-29658955 | MS.gene87746:CDS | 40.0% |
| ! | TCAGTTTGCTCGTCAAACAA+TGG | + | chr7.1:29661159-29661178 | None:intergenic | 40.0% |
| ! | TGCCAGATTTTCATGACAGT+TGG | + | chr7.1:29659682-29659701 | None:intergenic | 40.0% |
| ! | TTTTACAAGACACCCTTTGG+TGG | + | chr7.1:29658764-29658783 | None:intergenic | 40.0% |
| !! | AAACAGCAGAAGGTGTCATT+AGG | - | chr7.1:29661105-29661124 | MS.gene87746:intron | 40.0% |
| !! | GATAGAGTCGGCTTTAAAAC+AGG | + | chr7.1:29661003-29661022 | None:intergenic | 40.0% |
| !! | TTGAAGAGGCTTTAAGGAAG+TGG | - | chr7.1:29660842-29660861 | MS.gene87746:intron | 40.0% |
| AACGCATTGTCTAGCCATGA+GGG | - | chr7.1:29660553-29660572 | MS.gene87746:intron | 45.0% | |
| ACTCTGGTCCATCTGATCAT+AGG | - | chr7.1:29660920-29660939 | MS.gene87746:intron | 45.0% | |
| AGAAGCTCTACAAAGGGTAG+AGG | - | chr7.1:29660795-29660814 | MS.gene87746:intron | 45.0% | |
| CAAGTCTGGAGAAGATACAC+GGG | + | chr7.1:29660086-29660105 | None:intergenic | 45.0% | |
| CCACATAGAAGAGCTTGACA+AGG | - | chr7.1:29659793-29659812 | MS.gene87746:intron | 45.0% | |
| CCCTTGAAGAAGCTCTACAA+AGG | - | chr7.1:29660788-29660807 | MS.gene87746:intron | 45.0% | |
| CCCTTTGTAGAGCTTCTTCA+AGG | + | chr7.1:29660792-29660811 | None:intergenic | 45.0% | |
| CCTTGTCAAGCTCTTCTATG+TGG | + | chr7.1:29659796-29659815 | None:intergenic | 45.0% | |
| CGACAACGTCTTACACATTC+CGG | + | chr7.1:29659119-29659138 | None:intergenic | 45.0% | |
| GCTTGACAAGGAGAAACTAG+AGG | - | chr7.1:29659805-29659824 | MS.gene87746:intron | 45.0% | |
| GGTGCATGGAGAAATAGTCT+CGG | - | chr7.1:29661080-29661099 | MS.gene87746:intron | 45.0% | |
| TAACGCATTGTCTAGCCATG+AGG | - | chr7.1:29660552-29660571 | MS.gene87746:intron | 45.0% | |
| TGCCGCAACCAACCTAATTT+CGG | + | chr7.1:29660479-29660498 | None:intergenic | 45.0% | |
| TTAAGGAAGTGGCGATCTGA+CGG | - | chr7.1:29660853-29660872 | MS.gene87746:intron | 45.0% | |
| TTTGAAGAACCGATGGTGCA+TGG | - | chr7.1:29661066-29661085 | MS.gene87746:intron | 45.0% | |
| ! | ACTCCATCGATTGAGTTCAG+AGG | - | chr7.1:29660360-29660379 | MS.gene87746:intron | 45.0% |
| ! | TGCCACTTGCAGTCTTAATC+TGG | + | chr7.1:29660299-29660318 | None:intergenic | 45.0% |
| !! | AAATTAGGTTGGTTGCGGCA+AGG | - | chr7.1:29660479-29660498 | MS.gene87746:intron | 45.0% |
| !! | AGTCGGCTTTAAAACAGGCT+TGG | + | chr7.1:29660998-29661017 | None:intergenic | 45.0% |
| !! | TGCCGAAATTAGGTTGGTTG+CGG | - | chr7.1:29660474-29660493 | MS.gene87746:intron | 45.0% |
| !! | TGGTGCTGCAAACAAACAAG+AGG | + | chr7.1:29659776-29659795 | None:intergenic | 45.0% |
| !!! | AATCTAATTTTTTATATATA+TGG | + | chr7.1:29659445-29659464 | None:intergenic | 5.0% |
| AAACCAATCGAGTCCGTCTG+AGG | - | chr7.1:29660027-29660046 | MS.gene87746:intron | 50.0% | |
| ACGACGTATCAAGCTGAACC+GGG | - | chr7.1:29658317-29658336 | MS.gene87746:CDS | 50.0% | |
| ACTCTTCTGGTGTACCCTCA+TGG | + | chr7.1:29660570-29660589 | None:intergenic | 50.0% | |
| AGTCTCGGTGAAACAGCAGA+AGG | - | chr7.1:29661095-29661114 | MS.gene87746:intron | 50.0% | |
| CAAGGAGAAACTAGAGGAGC+AGG | - | chr7.1:29659811-29659830 | MS.gene87746:intron | 50.0% | |
| CACTTGAGAAAACCCGTGAG+AGG | - | chr7.1:29660221-29660240 | MS.gene87746:intron | 50.0% | |
| CGCTTCTGCATACACTCTTC+TGG | + | chr7.1:29660583-29660602 | None:intergenic | 50.0% | |
| GACGACGTATCAAGCTGAAC+CGG | - | chr7.1:29658316-29658335 | MS.gene87746:CDS | 50.0% | |
| GGCGATCTGACGGTCAAAAA+AGG | - | chr7.1:29660863-29660882 | MS.gene87746:intron | 50.0% | |
| GGTTGCGGCAAGGAAAATGA+AGG | - | chr7.1:29660489-29660508 | MS.gene87746:intron | 50.0% | |
| TCGTAAAGCTCGAGAAGCAG+AGG | - | chr7.1:29660645-29660664 | MS.gene87746:intron | 50.0% | |
| TCTGGAGAAGATACACGGGA+AGG | + | chr7.1:29660082-29660101 | None:intergenic | 50.0% | |
| TTCTTCAAGGGCCTTCTTGC+AGG | + | chr7.1:29660779-29660798 | None:intergenic | 50.0% | |
| AGGGTAGAGGCTGCAGATAG+AGG | - | chr7.1:29660808-29660827 | MS.gene87746:intron | 55.0% | |
| AGTAGCCAACACCACCGAAG+CGG | + | chr7.1:29658430-29658449 | None:intergenic | 55.0% | |
| CGGCCTCTGAACTCAATCGA+TGG | + | chr7.1:29660366-29660385 | None:intergenic | 55.0% | |
| GAAGCTGTTAACCGCTTCGG+TGG | - | chr7.1:29658416-29658435 | MS.gene87746:CDS | 55.0% | |
| GGGTAGAGGCTGCAGATAGA+GGG | - | chr7.1:29660809-29660828 | MS.gene87746:intron | 55.0% | |
| GTTAACCGCTTCGGTGGTGT+TGG | - | chr7.1:29658422-29658441 | MS.gene87746:CDS | 55.0% | |
| ! | AGAGTGTATGCAGAAGCGCG+AGG | - | chr7.1:29660585-29660604 | MS.gene87746:intron | 55.0% |
| ! | GAACCTCAGACGGACTCGAT+TGG | + | chr7.1:29660033-29660052 | None:intergenic | 55.0% |
| !! | GTGGCAAAAGGTGCTGCTTC+TGG | - | chr7.1:29660313-29660332 | MS.gene87746:intron | 55.0% |
| ! | AGAGGAGCAGGCAAGAGCGT+TGG | - | chr7.1:29659823-29659842 | MS.gene87746:intron | 60.0% |
| !! | GCTTCGGTGGTGTTGGCTAC+TGG | - | chr7.1:29658429-29658448 | MS.gene87746:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 29658293 | 29661302 | 29658293 | ID=MS.gene87746 |
| chr7.1 | mRNA | 29658293 | 29661302 | 29658293 | ID=MS.gene87746.t1;Parent=MS.gene87746 |
| chr7.1 | exon | 29661156 | 29661302 | 29661156 | ID=MS.gene87746.t1.exon1;Parent=MS.gene87746.t1 |
| chr7.1 | CDS | 29661156 | 29661302 | 29661156 | ID=cds.MS.gene87746.t1;Parent=MS.gene87746.t1 |
| chr7.1 | exon | 29658293 | 29659804 | 29658293 | ID=MS.gene87746.t1.exon2;Parent=MS.gene87746.t1 |
| chr7.1 | CDS | 29658293 | 29659804 | 29658293 | ID=cds.MS.gene87746.t1;Parent=MS.gene87746.t1 |
| Gene Sequence |
| Protein sequence |
