Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87920.t1 | XP_013451542.1 | 96.4 | 882 | 30 | 1 | 1 | 880 | 1 | 882 | 0.00E+00 | 1671.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87920.t1 | A9LLI7 | 53.6 | 916 | 337 | 16 | 2 | 880 | 5 | 869 | 9.4e-249 | 861.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87920.t1 | A0A072UIC2 | 96.4 | 882 | 30 | 1 | 1 | 880 | 1 | 882 | 0.0e+00 | 1671.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene87920 | MS.gene21793 | PPI |
MS.gene87920 | MS.gene050621 | PPI |
MS.gene87920 | MS.gene058069 | PPI |
MS.gene87920 | MS.gene40494 | PPI |
MS.gene87920 | MS.gene024471 | PPI |
MS.gene024821 | MS.gene87920 | PPI |
MS.gene87920 | MS.gene22822 | PPI |
MS.gene87920 | MS.gene025936 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87920.t1 | MTR_6g027760 | 96.372 | 882 | 30 | 1 | 1 | 880 | 1 | 882 | 0.0 | 1771 |
MS.gene87920.t1 | MTR_6g027760 | 96.865 | 638 | 18 | 1 | 1 | 636 | 1 | 638 | 0.0 | 1296 |
MS.gene87920.t1 | MTR_7g086370 | 52.941 | 731 | 281 | 12 | 30 | 743 | 8 | 692 | 0.0 | 711 |
MS.gene87920.t1 | MTR_7g086370 | 58.348 | 569 | 193 | 8 | 30 | 588 | 8 | 542 | 0.0 | 669 |
MS.gene87920.t1 | MTR_7g086370 | 58.887 | 467 | 150 | 7 | 26 | 484 | 4 | 436 | 0.0 | 555 |
MS.gene87920.t1 | MTR_4g048230 | 36.207 | 348 | 202 | 8 | 194 | 524 | 49 | 393 | 1.74e-56 | 210 |
MS.gene87920.t1 | MTR_4g048230 | 36.207 | 348 | 202 | 8 | 194 | 524 | 49 | 393 | 1.86e-56 | 210 |
MS.gene87920.t1 | MTR_7g087760 | 61.165 | 103 | 37 | 2 | 182 | 281 | 32 | 134 | 5.91e-32 | 126 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87920.t1 | AT5G35910 | 53.871 | 917 | 333 | 17 | 2 | 880 | 5 | 869 | 0.0 | 899 |
MS.gene87920.t1 | AT1G54440 | 59.004 | 522 | 164 | 7 | 159 | 679 | 18 | 490 | 0.0 | 617 |
MS.gene87920.t1 | AT1G54440 | 58.349 | 533 | 203 | 6 | 159 | 679 | 18 | 543 | 0.0 | 616 |
MS.gene87920.t1 | AT1G54440 | 68.029 | 416 | 130 | 2 | 159 | 573 | 18 | 431 | 0.0 | 614 |
MS.gene87920.t1 | AT1G54440 | 68.029 | 416 | 130 | 2 | 159 | 573 | 18 | 431 | 0.0 | 613 |
MS.gene87920.t1 | AT1G54440 | 68.029 | 416 | 130 | 2 | 159 | 573 | 18 | 431 | 0.0 | 612 |
MS.gene87920.t1 | AT2G32415 | 44.558 | 294 | 136 | 8 | 251 | 524 | 112 | 398 | 1.06e-59 | 219 |
MS.gene87920.t1 | AT2G32415 | 44.330 | 291 | 140 | 7 | 251 | 524 | 112 | 397 | 2.43e-59 | 218 |
MS.gene87920.t1 | AT2G32415 | 44.330 | 291 | 140 | 7 | 251 | 524 | 112 | 397 | 3.50e-59 | 218 |
Find 223 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCATATTGGGCCCCATTTA+AGG | 0.102573 | 6.1:-10185275 | MS.gene87920:CDS |
GATGGATTTGAGATGGTTTA+TGG | 0.145469 | 6.1:-10187645 | MS.gene87920:CDS |
CCTTGAAGACTTCCCTTAAA+TGG | 0.178270 | 6.1:+10185262 | None:intergenic |
AACTCATACCTTCATATATA+TGG | 0.183702 | 6.1:-10182628 | MS.gene87920:CDS |
CGGCACGACCATCGCAATTC+TGG | 0.198837 | 6.1:+10179975 | None:intergenic |
AACCTTTGGGTTCTGCGTTT+GGG | 0.220277 | 6.1:+10181048 | None:intergenic |
CAACCTTTGGGTTCTGCGTT+TGG | 0.231182 | 6.1:+10181047 | None:intergenic |
GGCTTCAAAGGTGTTAAAAT+TGG | 0.240848 | 6.1:-10184791 | MS.gene87920:CDS |
CCAGGAAAAGCTATCTGTTT+TGG | 0.250155 | 6.1:-10186206 | MS.gene87920:intron |
TTGAAATATATAGGTTGATT+TGG | 0.252839 | 6.1:-10185394 | MS.gene87920:intron |
TGGCACACTCTCTACATTAA+AGG | 0.255279 | 6.1:-10180816 | MS.gene87920:intron |
TTGAAACTCCGCATTCATAT+TGG | 0.281478 | 6.1:-10185288 | MS.gene87920:CDS |
AGCTCAGATGTGACATTATT+GGG | 0.284320 | 6.1:+10180887 | None:intergenic |
GAGCTCAGATGTGACATTAT+TGG | 0.284368 | 6.1:+10180886 | None:intergenic |
GTTTGAATTCGTTGAAATTC+CGG | 0.285792 | 6.1:+10187910 | None:intergenic |
AGGGAAGGTGGTTGGGGTGG+AGG | 0.295477 | 6.1:-10187601 | MS.gene87920:CDS |
CGTGCAGCATTTCCTGCTTC+CGG | 0.299177 | 6.1:-10179860 | MS.gene87920:CDS |
GAAGCTTGCCCTTGATAAAA+AGG | 0.300623 | 6.1:-10180625 | MS.gene87920:intron |
CTACCTTGTTGAAATTGTTT+AGG | 0.309737 | 6.1:+10179887 | None:intergenic |
GAGAGGGAAGGTGGTTGGGG+TGG | 0.314185 | 6.1:-10187604 | MS.gene87920:CDS |
GTGGGAGAGGGAAGGTGGTT+GGG | 0.325054 | 6.1:-10187608 | MS.gene87920:CDS |
GGGTTCTGCGTTTGGGGTGC+GGG | 0.331706 | 6.1:+10181055 | None:intergenic |
GGTGGTTGGGGTGGAGGATT+CGG | 0.332207 | 6.1:-10187595 | MS.gene87920:CDS |
TGGGAGAGGGAAGGTGGTTG+GGG | 0.338865 | 6.1:-10187607 | MS.gene87920:CDS |
TGAAACTCCGCATTCATATT+GGG | 0.339548 | 6.1:-10185287 | MS.gene87920:CDS |
GCTTCGAATTCCCCATTTCC+TGG | 0.344942 | 6.1:-10187831 | MS.gene87920:CDS |
AGAAGAAGTCAAAGATTTGA+AGG | 0.347233 | 6.1:-10186107 | MS.gene87920:CDS |
AAGAAGAAGAAAGGTGGGAG+AGG | 0.349770 | 6.1:-10187621 | MS.gene87920:CDS |
GCCACATGCGTCCTCTTTCT+CGG | 0.359459 | 6.1:+10179955 | None:intergenic |
GCAATGAACCATGTGAAGTT+TGG | 0.359777 | 6.1:-10180022 | MS.gene87920:CDS |
AACAATTTCAACAAGGTAGA+AGG | 0.361242 | 6.1:-10179883 | MS.gene87920:CDS |
GTGCAGCATTTCCTGCTTCC+GGG | 0.362027 | 6.1:-10179859 | MS.gene87920:CDS |
ATGGATTTGAGATGGTTTAT+GGG | 0.370997 | 6.1:-10187644 | MS.gene87920:CDS |
TGGGTTCTGCGTTTGGGGTG+CGG | 0.371169 | 6.1:+10181054 | None:intergenic |
GAATGTGAATGATGACGTTT+TGG | 0.378867 | 6.1:-10187778 | MS.gene87920:CDS |
CTTGAAGACTTCCCTTAAAT+GGG | 0.379705 | 6.1:+10185263 | None:intergenic |
AACGGGAATGGGAGAGTGAA+TGG | 0.380317 | 6.1:-10187690 | MS.gene87920:CDS |
TTGTGCAGGTTGCAAGGGGC+TGG | 0.383702 | 6.1:-10182419 | MS.gene87920:intron |
GTAACCTCCAATCAGCATTC+TGG | 0.388706 | 6.1:+10184605 | None:intergenic |
TCATCAAGATCACCAGGAAA+TGG | 0.390034 | 6.1:+10187819 | None:intergenic |
TCAGAACTTTCAGGTGCCTT+TGG | 0.390098 | 6.1:+10183067 | None:intergenic |
TCCAGATTGTGTTCAAGATA+TGG | 0.396042 | 6.1:+10182000 | None:intergenic |
CAAGCTTCCTCTTTGAAGCT+GGG | 0.398298 | 6.1:+10180640 | None:intergenic |
GAATGTTGCACTGCGATTCC+CGG | 0.399481 | 6.1:+10179841 | None:intergenic |
TCAACAGCTTGCCATTGTTT+CGG | 0.400022 | 6.1:-10182387 | MS.gene87920:intron |
AATAAAACTGTTCTTGAAAT+CGG | 0.401112 | 6.1:-10182179 | MS.gene87920:intron |
AAGTGCGGCGGTTGCGGTGG+TGG | 0.403423 | 6.1:+10188025 | None:intergenic |
GCAAGCTTCCTCTTTGAAGC+TGG | 0.404786 | 6.1:+10180639 | None:intergenic |
CATCAAGATCACCAGGAAAT+GGG | 0.409769 | 6.1:+10187820 | None:intergenic |
TCCATATCTTGAACACAATC+TGG | 0.411490 | 6.1:-10182001 | MS.gene87920:CDS |
ATTGCTGCTTCATAATCATA+TGG | 0.412607 | 6.1:+10180040 | None:intergenic |
CACGCGAGATTTCATCGATT+GGG | 0.412659 | 6.1:+10187886 | None:intergenic |
GGTTTGAAGTGCGGCGGTTG+CGG | 0.416046 | 6.1:+10188019 | None:intergenic |
GGTTGCAGGGGCTGTGTGAA+TGG | 0.419015 | 6.1:-10182253 | MS.gene87920:intron |
TTCGGAGATTGCGGTGGCCG+AGG | 0.427912 | 6.1:-10187577 | MS.gene87920:CDS |
CCATTTAAGGGAAGTCTTCA+AGG | 0.428556 | 6.1:-10185262 | MS.gene87920:CDS |
GCGGGATCTTCAGTCGTAAC+AGG | 0.433708 | 6.1:+10181073 | None:intergenic |
TGCAACCAAACATGCTCAAA+AGG | 0.433863 | 6.1:+10187432 | None:intergenic |
ATCTTGATGATGGTTATGAT+TGG | 0.435150 | 6.1:-10187806 | MS.gene87920:CDS |
TCATATTGGGCCCCATTTAA+GGG | 0.437250 | 6.1:-10185274 | MS.gene87920:CDS |
GGTGGGAGAGGGAAGGTGGT+TGG | 0.438397 | 6.1:-10187609 | MS.gene87920:CDS |
CTTAACATCTCATCAGGAAT+CGG | 0.441444 | 6.1:+10184580 | None:intergenic |
GAAAGGTGGGAGAGGGAAGG+TGG | 0.445479 | 6.1:-10187613 | MS.gene87920:CDS |
AGAAGAAGAAAGGTGGGAGA+GGG | 0.448193 | 6.1:-10187620 | MS.gene87920:CDS |
GCGTTCTGTTAATGAATTTG+CGG | 0.451542 | 6.1:-10186068 | MS.gene87920:intron |
CTTCTTCTACAAGCTTGAAA+GGG | 0.452246 | 6.1:+10186122 | None:intergenic |
GTGGAAGCTGGACCAGAAAC+AGG | 0.453822 | 6.1:+10180319 | None:intergenic |
CGTAGCTTGTTTGTAGTGAC+AGG | 0.454362 | 6.1:+10182045 | None:intergenic |
GGCACGACCATCGCAATTCT+GGG | 0.454889 | 6.1:+10179976 | None:intergenic |
TTGTACCTTAACATCTCATC+AGG | 0.456048 | 6.1:+10184574 | None:intergenic |
CAGATAGTGTGTATCTTCTC+TGG | 0.459641 | 6.1:+10183132 | None:intergenic |
CGATTCCTGATGAGATGTTA+AGG | 0.462250 | 6.1:-10184579 | MS.gene87920:intron |
TCTAGAGCGGATGTGGAAGC+TGG | 0.464126 | 6.1:+10180307 | None:intergenic |
ACTCATACCTTCATATATAT+GGG | 0.465497 | 6.1:-10182627 | MS.gene87920:intron |
GAAAGGGGTGCTTTCTAATG+AGG | 0.466368 | 6.1:+10186138 | None:intergenic |
TTGATCGTGATCGACGTTCA+TGG | 0.467370 | 6.1:+10188058 | None:intergenic |
ATTTGGAGCATAATCAATAT+CGG | 0.467524 | 6.1:-10185377 | MS.gene87920:CDS |
AGGAGGCAAAGAACGGGAAT+GGG | 0.469042 | 6.1:-10187701 | MS.gene87920:CDS |
TGCGGTGGCCGAGGGTGTAA+AGG | 0.470791 | 6.1:-10187568 | MS.gene87920:CDS |
TTGCTTTGTTTAGGCTTCAA+AGG | 0.471995 | 6.1:-10184803 | MS.gene87920:intron |
ATGAATTTCGCGAGTATCGA+AGG | 0.477753 | 6.1:-10187734 | MS.gene87920:CDS |
ATCCCTAGTCTGCTCTGAAA+TGG | 0.478916 | 6.1:+10180847 | None:intergenic |
GAGGAGGCAAAGAACGGGAA+TGG | 0.481926 | 6.1:-10187702 | MS.gene87920:CDS |
ACATTAGGAGTTTCTACTAC+AGG | 0.482202 | 6.1:+10180358 | None:intergenic |
TGTATCACTAACCTTCCTCT+TGG | 0.483024 | 6.1:+10185233 | None:intergenic |
TTTCCTGGTGATCTTGATGA+TGG | 0.483573 | 6.1:-10187816 | MS.gene87920:CDS |
CACTGATACAGGTGCGGACG+AGG | 0.483682 | 6.1:-10180266 | MS.gene87920:CDS |
TACAGGTGCGGACGAGGATG+TGG | 0.483734 | 6.1:-10180260 | MS.gene87920:CDS |
AAAGATAAGAGGGCGGTTGG+AGG | 0.486512 | 6.1:-10187537 | MS.gene87920:CDS |
TTGAAGTGCGGCGGTTGCGG+TGG | 0.486632 | 6.1:+10188022 | None:intergenic |
ATGGGAAGAAGAAGAAAGGT+GGG | 0.487754 | 6.1:-10187626 | MS.gene87920:CDS |
CATCGCCACCTTTACACCCT+CGG | 0.489656 | 6.1:+10187560 | None:intergenic |
ATGAGAGTGGACCGGAGGAT+AGG | 0.491546 | 6.1:+10187997 | None:intergenic |
AATCTCATCTAGAGCGGATG+TGG | 0.492564 | 6.1:+10180300 | None:intergenic |
ACCTTTGGGTTCTGCGTTTG+GGG | 0.494577 | 6.1:+10181049 | None:intergenic |
CAATCCATGCTTGAAGCAAT+CGG | 0.495693 | 6.1:-10187858 | MS.gene87920:CDS |
TGAGAGTGGACCGGAGGATA+GGG | 0.498231 | 6.1:+10187998 | None:intergenic |
ACTTCTTCTACAAGCTTGAA+AGG | 0.498506 | 6.1:+10186121 | None:intergenic |
GAGAAGAGGAGGCAAAGAAC+GGG | 0.498619 | 6.1:-10187707 | MS.gene87920:CDS |
GAAGAAAGGTGGGAGAGGGA+AGG | 0.499296 | 6.1:-10187616 | MS.gene87920:CDS |
GCAGAAGTTTGTTCATCCAT+TGG | 0.502726 | 6.1:-10187394 | MS.gene87920:intron |
AGAGGAGTATCAGAACTTTC+AGG | 0.505570 | 6.1:+10183058 | None:intergenic |
GAGGCAATGATGGTGGATGA+TGG | 0.505739 | 6.1:-10187663 | MS.gene87920:CDS |
CCAGATACCAGAATGCTGAT+TGG | 0.506325 | 6.1:-10184612 | MS.gene87920:intron |
AAATGGTGAGACTTTCCCTT+GGG | 0.506396 | 6.1:+10180864 | None:intergenic |
GTGTGGCTTCAACGAGACTT+TGG | 0.507802 | 6.1:-10185108 | MS.gene87920:CDS |
TACAAACAAGCTACGGCGAT+TGG | 0.509048 | 6.1:-10182037 | MS.gene87920:CDS |
ATAATGCTAGACACTGATAC+AGG | 0.509889 | 6.1:-10180277 | MS.gene87920:CDS |
TAAGAGGGCGGTTGGAGGGA+AGG | 0.511174 | 6.1:-10187532 | MS.gene87920:CDS |
CGTGCAGAGGATGAGAGTAC+TGG | 0.511264 | 6.1:-10182215 | MS.gene87920:CDS |
TTGAGCATGTTTGGTTGCAG+AGG | 0.511268 | 6.1:-10187428 | MS.gene87920:CDS |
AGAAAACCCCACCGAGGAGA+TGG | 0.512515 | 6.1:-10180221 | MS.gene87920:CDS |
AAGATAAGAGGGCGGTTGGA+GGG | 0.513138 | 6.1:-10187536 | MS.gene87920:CDS |
TGAAAGTTCTGATACTCCTC+TGG | 0.517597 | 6.1:-10183056 | MS.gene87920:CDS |
ACGGGAATGGGAGAGTGAAT+GGG | 0.517843 | 6.1:-10187689 | MS.gene87920:CDS |
TCACGCGAGATTTCATCGAT+TGG | 0.517911 | 6.1:+10187885 | None:intergenic |
TCACCATTTCAGAGCAGACT+AGG | 0.519614 | 6.1:-10180850 | MS.gene87920:CDS |
TAATATGTTTGACACTGGCC+AGG | 0.521267 | 6.1:-10185073 | MS.gene87920:intron |
GCACTGCGATTCCCGGAAGC+AGG | 0.521367 | 6.1:+10179848 | None:intergenic |
TCACTAACCTTCCTCTTGGA+AGG | 0.523807 | 6.1:+10185237 | None:intergenic |
TTAACATCTCATCAGGAATC+GGG | 0.524383 | 6.1:+10184581 | None:intergenic |
TGGGAGAGTGAATGGGAATG+AGG | 0.525813 | 6.1:-10187682 | MS.gene87920:CDS |
AAGAAGAAATCTCTCTCCGA+TGG | 0.527652 | 6.1:+10187936 | None:intergenic |
TAAATTAAACAGGTTATGCA+TGG | 0.528172 | 6.1:-10185147 | MS.gene87920:intron |
TTCTGATACTCCTCTGGTAG+AGG | 0.529021 | 6.1:-10183050 | MS.gene87920:intron |
ATGAAAGATAAGAGGGCGGT+TGG | 0.529366 | 6.1:-10187540 | MS.gene87920:CDS |
CGATGGTCGTGCCGAGAAAG+AGG | 0.529789 | 6.1:-10179966 | MS.gene87920:CDS |
TGGTTGCAGAGGAGTGATGA+TGG | 0.533011 | 6.1:-10187417 | MS.gene87920:CDS |
AATCAATATCGGTCTTTCCA+AGG | 0.533016 | 6.1:-10185366 | MS.gene87920:CDS |
AGGTGGCGATGAAAGATAAG+AGG | 0.533401 | 6.1:-10187548 | MS.gene87920:CDS |
TCGGAGATTGCGGTGGCCGA+GGG | 0.533553 | 6.1:-10187576 | MS.gene87920:CDS |
GAATGGGAATGAGGCAATGA+TGG | 0.536658 | 6.1:-10187673 | MS.gene87920:CDS |
CCATCGCAATTCTGGGAGGA+TGG | 0.537077 | 6.1:+10179983 | None:intergenic |
GGTGGATGATGGATTTGAGA+TGG | 0.538645 | 6.1:-10187652 | MS.gene87920:CDS |
GAGTGCCTCAACTTCGGATG+AGG | 0.538923 | 6.1:-10180188 | MS.gene87920:CDS |
AGTCAAAGATTTGAAGGAGA+TGG | 0.540945 | 6.1:-10186101 | MS.gene87920:CDS |
TAACTTATGTTCCTTGCCAA+AGG | 0.541606 | 6.1:-10183083 | MS.gene87920:CDS |
AATTGTTTAGGCAAATCACT+TGG | 0.544341 | 6.1:+10179899 | None:intergenic |
AAGAAGAAGCGTTCAACGAT+AGG | 0.546184 | 6.1:-10179932 | MS.gene87920:CDS |
GCATCAAGCAAGTCAAACCT+TGG | 0.548236 | 6.1:+10185349 | None:intergenic |
GGTGGAGGATTCGGAGATTG+CGG | 0.553272 | 6.1:-10187586 | MS.gene87920:CDS |
ACCGACTATTCGAAGGCCGC+AGG | 0.554849 | 6.1:-10187490 | MS.gene87920:CDS |
CGAATAGTCGGTATATGAAA+CGG | 0.556737 | 6.1:+10187501 | None:intergenic |
GGCGGTTGGAGGGAAGGCGA+AGG | 0.557044 | 6.1:-10187526 | MS.gene87920:CDS |
CGAGAAGAGGAGGCAAAGAA+CGG | 0.563042 | 6.1:-10187708 | MS.gene87920:CDS |
GAAATGGTGAGACTTTCCCT+TGG | 0.563297 | 6.1:+10180863 | None:intergenic |
GTATCGAAGGATTCGAGAAG+AGG | 0.564200 | 6.1:-10187721 | MS.gene87920:CDS |
ACTTTCAGGTGCCTTTGGCA+AGG | 0.564754 | 6.1:+10183072 | None:intergenic |
GTTGCGGTGGTGGTGTGCGG+TGG | 0.565208 | 6.1:+10188035 | None:intergenic |
CAGACTAGGGATGCAAATGT+TGG | 0.565322 | 6.1:-10180836 | MS.gene87920:CDS |
GCGGTTGCGGTGGTGGTGTG+CGG | 0.565723 | 6.1:+10188032 | None:intergenic |
TCCTGCGGCCTTCGAATAGT+CGG | 0.565845 | 6.1:+10187489 | None:intergenic |
GCTGCTCAACAGTTGAAAGA+AGG | 0.567354 | 6.1:-10181922 | MS.gene87920:CDS |
AGACGAACCCATATATATGA+AGG | 0.567693 | 6.1:+10182620 | None:intergenic |
GGGAAATGGAGCTACTGTCC+AGG | 0.568280 | 6.1:-10180706 | MS.gene87920:CDS |
CAAGGACCCTTCCAAGAGGA+AGG | 0.568861 | 6.1:-10185244 | MS.gene87920:intron |
TGGGAATGAGGCAATGATGG+TGG | 0.570048 | 6.1:-10187670 | MS.gene87920:CDS |
CCACCCGTAAATGAATGAAA+AGG | 0.573299 | 6.1:+10180397 | None:intergenic |
TACTGATGATGAGAGTGGAC+CGG | 0.576204 | 6.1:+10187989 | None:intergenic |
TATGGGAAGAAGAAGAAAGG+TGG | 0.578035 | 6.1:-10187627 | MS.gene87920:CDS |
CTCATCCTCATCCGAAGTTG+AGG | 0.581884 | 6.1:+10180183 | None:intergenic |
AAAGGGGTGCTTTCTAATGA+GGG | 0.581990 | 6.1:+10186139 | None:intergenic |
GTTTATGGGAAGAAGAAGAA+AGG | 0.582971 | 6.1:-10187630 | MS.gene87920:CDS |
GGATGAGCCTAAGTCTCTCT+CGG | 0.587200 | 6.1:-10180167 | MS.gene87920:CDS |
GATACCAGAATGCTGATTGG+AGG | 0.587454 | 6.1:-10184609 | MS.gene87920:CDS |
TGAACACAATCTGGATTCTG+TGG | 0.588424 | 6.1:-10181992 | MS.gene87920:CDS |
CTGTCACTACAAACAAGCTA+CGG | 0.589432 | 6.1:-10182044 | MS.gene87920:CDS |
CACTAACCTTCCTCTTGGAA+GGG | 0.590411 | 6.1:+10185238 | None:intergenic |
TCATCCGAAGTTGAGGCACT+CGG | 0.591255 | 6.1:+10180190 | None:intergenic |
TTCATATACCGACTATTCGA+AGG | 0.592246 | 6.1:-10187497 | MS.gene87920:CDS |
ATGTCACATCTGAGCTCCCA+AGG | 0.593539 | 6.1:-10180880 | MS.gene87920:CDS |
GTTTGTAATATGTTTGACAC+TGG | 0.593699 | 6.1:-10185078 | MS.gene87920:CDS |
GCACTTCAAACCCTATCCTC+CGG | 0.594085 | 6.1:-10188008 | MS.gene87920:CDS |
CACCATTTCAGAGCAGACTA+GGG | 0.595124 | 6.1:-10180849 | MS.gene87920:CDS |
TAACCATCATCAAGATCACC+AGG | 0.595832 | 6.1:+10187813 | None:intergenic |
TCGAAGGATTCGAGAAGAGG+AGG | 0.596007 | 6.1:-10187718 | MS.gene87920:CDS |
ACAGAAACTCACCGAAACAA+TGG | 0.600974 | 6.1:+10182376 | None:intergenic |
TTCTTCTACAAGCTTGAAAG+GGG | 0.601284 | 6.1:+10186123 | None:intergenic |
AACACCGATTGCTTCAAGCA+TGG | 0.602517 | 6.1:+10187854 | None:intergenic |
GGTTGCAGAGGAGTGATGAT+GGG | 0.602552 | 6.1:-10187416 | MS.gene87920:CDS |
AAATCCGAGTGCCTCAACTT+CGG | 0.604029 | 6.1:-10180194 | MS.gene87920:CDS |
ATCAAGATCACCAGGAAATG+GGG | 0.606037 | 6.1:+10187821 | None:intergenic |
AGTGCCCCAAAAGCACCACC+AGG | 0.606319 | 6.1:+10180672 | None:intergenic |
TTCTTCACGCTGTATCCCAT+CGG | 0.612000 | 6.1:-10187952 | MS.gene87920:CDS |
TGGGATACAGCGTGAAGAAG+CGG | 0.613295 | 6.1:+10187956 | None:intergenic |
GGAGGATTCGGAGATTGCGG+TGG | 0.614618 | 6.1:-10187583 | MS.gene87920:CDS |
CCATCCTCCCAGAATTGCGA+TGG | 0.614689 | 6.1:-10179983 | MS.gene87920:CDS |
AGAAGAAATCTCTCTCCGAT+GGG | 0.614993 | 6.1:+10187937 | None:intergenic |
GGAGGATAGGGTTTGAAGTG+CGG | 0.615202 | 6.1:+10188010 | None:intergenic |
ACCCCAAACGCAGAACCCAA+AGG | 0.617565 | 6.1:-10181050 | MS.gene87920:intron |
GGATAGGGTTTGAAGTGCGG+CGG | 0.617824 | 6.1:+10188013 | None:intergenic |
AGGGGTGCTTTCTAATGAGG+GGG | 0.618101 | 6.1:+10186141 | None:intergenic |
GACAGTTCCGAGAGAGACTT+AGG | 0.625849 | 6.1:+10180160 | None:intergenic |
AAGCGTTCAACGATAGGAGA+GGG | 0.625904 | 6.1:-10179926 | MS.gene87920:CDS |
TTGAAGACTTCCCTTAAATG+GGG | 0.630407 | 6.1:+10185264 | None:intergenic |
GAAGCGTTCAACGATAGGAG+AGG | 0.642542 | 6.1:-10179927 | MS.gene87920:CDS |
TAAGTAGTTACCTCTACCAG+AGG | 0.644023 | 6.1:+10183040 | None:intergenic |
GGTGGCGATGAAAGATAAGA+GGG | 0.645361 | 6.1:-10187547 | MS.gene87920:CDS |
GGTGGCCGAGGGTGTAAAGG+TGG | 0.645414 | 6.1:-10187565 | MS.gene87920:CDS |
TGTATATATATGATACAATG+AGG | 0.648459 | 6.1:-10183108 | MS.gene87920:CDS |
AAGAAAACTGAACAAGCTAG+TGG | 0.650365 | 6.1:-10180079 | MS.gene87920:CDS |
TAAACAGGTTATGCATGGTG+CGG | 0.651251 | 6.1:-10185142 | MS.gene87920:intron |
CATTATAATCTCATCTAGAG+CGG | 0.655764 | 6.1:+10180294 | None:intergenic |
AAGGGGTGCTTTCTAATGAG+GGG | 0.656030 | 6.1:+10186140 | None:intergenic |
GCCGAGAAAGAGGACGCATG+TGG | 0.658036 | 6.1:-10179956 | MS.gene87920:CDS |
GAAAATACTACTTACTGTGG+TGG | 0.658324 | 6.1:+10181894 | None:intergenic |
TGACATTGTTGCTCGTGCAG+AGG | 0.662978 | 6.1:-10182228 | MS.gene87920:CDS |
TGGGGAACCCAGCTTCAAAG+AGG | 0.664226 | 6.1:-10180647 | MS.gene87920:CDS |
CTGAATTGAATGTCTGATGA+CGG | 0.666376 | 6.1:+10181966 | None:intergenic |
GAAGCTACTGATGATGAGAG+TGG | 0.675485 | 6.1:+10187984 | None:intergenic |
TGATGATGAGAGTGGACCGG+AGG | 0.677910 | 6.1:+10187992 | None:intergenic |
GCTTGATGCAAATATCAACA+AGG | 0.677925 | 6.1:-10185335 | MS.gene87920:CDS |
GGGGTGCTTTCTAATGAGGG+GGG | 0.685045 | 6.1:+10186142 | None:intergenic |
TTGCCTAAACAATTTCAACA+AGG | 0.687999 | 6.1:-10179890 | MS.gene87920:CDS |
TGTCACATCTGAGCTCCCAA+GGG | 0.692775 | 6.1:-10180879 | MS.gene87920:CDS |
AATGGGGCCCAATATGAATG+CGG | 0.696608 | 6.1:+10185280 | None:intergenic |
ATTATACTAAACTCATCCTG+CGG | 0.699046 | 6.1:+10187474 | None:intergenic |
TCTTCAAGGACCCTTCCAAG+AGG | 0.704988 | 6.1:-10185248 | MS.gene87920:CDS |
GCTAGACACTGATACAGGTG+CGG | 0.712316 | 6.1:-10180272 | MS.gene87920:CDS |
GGCGATGAAAGATAAGAGGG+CGG | 0.714073 | 6.1:-10187544 | MS.gene87920:CDS |
ACGACCATCGCAATTCTGGG+AGG | 0.726102 | 6.1:+10179979 | None:intergenic |
GTGCGGATAAAGATATTGTG+TGG | 0.752716 | 6.1:-10185125 | MS.gene87920:CDS |
TAACCTAGAAAACCCCACCG+AGG | 0.773655 | 6.1:-10180227 | MS.gene87920:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 10179835 | 10188078 | 10179835 | ID=MS.gene87920 |
chr6.1 | mRNA | 10179835 | 10188078 | 10179835 | ID=MS.gene87920.t1;Parent=MS.gene87920 |
chr6.1 | exon | 10187395 | 10188078 | 10187395 | ID=MS.gene87920.t1.exon1;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10187395 | 10188078 | 10187395 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10186069 | 10186224 | 10186069 | ID=MS.gene87920.t1.exon2;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10186069 | 10186224 | 10186069 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10185245 | 10185403 | 10185245 | ID=MS.gene87920.t1.exon3;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10185245 | 10185403 | 10185245 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10185074 | 10185157 | 10185074 | ID=MS.gene87920.t1.exon4;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10185074 | 10185157 | 10185074 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10184733 | 10184812 | 10184733 | ID=MS.gene87920.t1.exon5;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10184733 | 10184812 | 10184733 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10184580 | 10184630 | 10184580 | ID=MS.gene87920.t1.exon6;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10184580 | 10184630 | 10184580 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10183051 | 10183159 | 10183051 | ID=MS.gene87920.t1.exon7;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10183051 | 10183159 | 10183051 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10182628 | 10182710 | 10182628 | ID=MS.gene87920.t1.exon8;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10182628 | 10182710 | 10182628 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10182388 | 10182433 | 10182388 | ID=MS.gene87920.t1.exon9;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10182388 | 10182433 | 10182388 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10182180 | 10182267 | 10182180 | ID=MS.gene87920.t1.exon10;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10182180 | 10182267 | 10182180 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10181909 | 10182078 | 10181909 | ID=MS.gene87920.t1.exon11;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10181909 | 10182078 | 10181909 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10181051 | 10181110 | 10181051 | ID=MS.gene87920.t1.exon12;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10181051 | 10181110 | 10181051 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10180817 | 10180954 | 10180817 | ID=MS.gene87920.t1.exon13;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10180817 | 10180954 | 10180817 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10180626 | 10180727 | 10180626 | ID=MS.gene87920.t1.exon14;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10180626 | 10180727 | 10180626 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
chr6.1 | exon | 10179835 | 10180467 | 10179835 | ID=MS.gene87920.t1.exon15;Parent=MS.gene87920.t1 |
chr6.1 | CDS | 10179835 | 10180467 | 10179835 | ID=cds.MS.gene87920.t1;Parent=MS.gene87920.t1 |
Gene Sequence |
Protein sequence |