AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87999

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87999.t1 MTR_4g029600 93.074 231 6 2 1 231 1 221 6.59e-94 274
MS.gene87999.t1 MTR_4g029620 74.254 268 29 4 1 228 1 268 9.23e-88 264
MS.gene87999.t1 MTR_4g029620 88.177 203 24 0 26 228 116 318 5.85e-78 239
MS.gene87999.t1 MTR_4g029620 85.922 206 29 0 25 230 105 310 9.78e-77 236
MS.gene87999.t1 MTR_4g029620 84.878 205 31 0 26 230 126 330 2.55e-74 230
MS.gene87999.t1 MTR_4g029620 82.407 216 28 2 25 230 140 355 9.88e-74 228
MS.gene87999.t1 MTR_4g029620 78.995 219 31 3 26 229 161 379 2.11e-69 217
MS.gene87999.t1 MTR_4g029620 76.000 150 31 1 25 174 235 379 6.51e-42 146
MS.gene87999.t1 MTR_4g029620 65.432 81 18 2 24 104 309 379 7.37e-13 67.4
MS.gene87999.t1 MTR_4g029550 89.076 238 16 2 1 228 1 238 2.19e-87 261
MS.gene87999.t1 MTR_4g029550 90.278 216 11 2 26 231 96 311 1.39e-83 251
MS.gene87999.t1 MTR_4g029550 85.507 69 10 0 25 93 240 308 2.88e-15 73.9
MS.gene87999.t1 MTR_4g029630 75.576 217 43 2 22 228 1 217 1.40e-67 207
MS.gene87999.t1 MTR_4g029630 79.856 139 28 0 92 230 6 144 2.10e-41 140
MS.gene87999.t1 MTR_4g029630 82.178 101 18 0 130 230 4 104 4.43e-29 108
MS.gene87999.t1 MTR_6g011410 42.767 159 91 0 23 181 69 227 3.29e-33 120
MS.gene87999.t1 MTR_6g011410 43.871 155 87 0 62 216 73 227 3.40e-33 120
MS.gene87999.t1 MTR_6g011410 43.871 155 87 0 32 186 73 227 3.95e-33 120
MS.gene87999.t1 MTR_6g011410 43.125 160 91 0 47 206 68 227 5.73e-33 120
MS.gene87999.t1 MTR_6g011410 43.125 160 91 0 62 221 68 227 5.73e-33 120
MS.gene87999.t1 MTR_6g011410 43.125 160 91 0 37 196 68 227 7.80e-33 119
MS.gene87999.t1 MTR_6g011410 43.871 155 87 0 57 211 73 227 5.52e-32 117
MS.gene87999.t1 MTR_6g011410 43.506 154 87 0 77 230 73 226 7.60e-32 117
MS.gene87999.t1 MTR_6g011410 44.156 154 86 0 72 225 73 226 9.91e-32 116
MS.gene87999.t1 MTR_6g011410 42.361 144 78 1 92 230 68 211 6.47e-25 99.0
MS.gene87999.t1 MTR_4g029760 48.214 112 49 3 1 112 1 103 1.38e-17 75.9
MS.gene87999.t1 MTR_3g415650 49.474 95 46 1 1 93 1 95 4.05e-15 69.3
MS.gene87999.t1 MTR_4g029770 42.991 107 42 3 1 99 1 96 1.25e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87999.t1 AT3G22142 50.746 201 99 0 24 224 1101 1301 2.11e-49 173
MS.gene87999.t1 AT3G22142 50.495 202 100 0 25 226 1097 1298 5.93e-49 172
MS.gene87999.t1 AT3G22142 51.020 196 96 0 33 228 1100 1295 4.46e-47 167
MS.gene87999.t1 AT3G22142 50.510 196 97 0 35 230 1097 1292 5.46e-47 166
MS.gene87999.t1 AT3G22142 45.923 233 106 1 18 230 1160 1392 1.45e-46 165
MS.gene87999.t1 AT3G22142 48.416 221 98 1 27 231 1053 1273 1.66e-46 165
MS.gene87999.t1 AT3G22142 45.935 246 92 2 24 228 995 1240 2.56e-46 164
MS.gene87999.t1 AT3G22142 45.817 251 93 3 21 228 1005 1255 4.34e-46 164
MS.gene87999.t1 AT3G22142 47.964 221 99 1 26 230 1057 1277 4.97e-46 164
MS.gene87999.t1 AT3G22142 46.121 232 100 1 24 230 1126 1357 1.21e-45 162
MS.gene87999.t1 AT3G22142 45.690 232 101 1 24 230 1136 1367 9.87e-45 160
MS.gene87999.t1 AT3G22142 47.085 223 98 1 24 226 1151 1373 1.58e-44 159
MS.gene87999.t1 AT3G22142 45.374 227 104 1 24 230 1116 1342 2.03e-44 159
MS.gene87999.t1 AT3G22142 46.256 227 102 1 24 230 1156 1382 5.87e-44 157
MS.gene87999.t1 AT3G22142 45.267 243 97 2 24 230 990 1232 6.34e-44 157
MS.gene87999.t1 AT3G22142 46.218 238 97 2 24 230 985 1222 8.47e-44 157
MS.gene87999.t1 AT3G22142 47.032 219 101 1 24 227 1176 1394 5.34e-42 152
MS.gene87999.t1 AT3G22142 40.072 277 95 3 25 230 916 1192 8.43e-38 140
MS.gene87999.t1 AT3G22142 42.529 261 94 3 24 228 880 1140 1.67e-37 139
MS.gene87999.t1 AT3G22142 45.946 222 100 1 29 230 625 846 3.71e-37 138
MS.gene87999.t1 AT3G22142 44.156 231 94 2 26 221 572 802 9.35e-37 137
MS.gene87999.t1 AT3G22142 40.293 273 97 3 24 230 875 1147 1.24e-36 137
MS.gene87999.t1 AT3G22142 40.755 265 96 3 27 230 908 1172 3.30e-36 135
MS.gene87999.t1 AT3G22142 39.194 273 100 3 24 230 910 1182 3.49e-36 135
MS.gene87999.t1 AT3G22142 40.672 268 98 3 24 230 890 1157 4.62e-36 135
MS.gene87999.t1 AT3G22142 38.971 272 101 3 24 230 510 781 6.85e-36 134
MS.gene87999.t1 AT3G22142 46.083 217 97 1 24 220 630 846 7.47e-36 134
MS.gene87999.t1 AT3G22142 39.483 271 99 3 25 230 501 771 1.09e-35 134
MS.gene87999.t1 AT3G22142 44.144 222 94 2 24 215 625 846 1.33e-35 134
MS.gene87999.t1 AT3G22142 39.405 269 98 3 27 230 673 941 1.44e-35 134
MS.gene87999.t1 AT3G22142 38.971 272 101 3 24 230 530 801 1.88e-35 133
MS.gene87999.t1 AT3G22142 38.603 272 102 3 24 230 520 791 4.87e-35 132
MS.gene87999.t1 AT3G22142 38.889 270 100 3 24 228 640 909 1.98e-34 130
MS.gene87999.t1 AT3G22142 37.868 272 104 3 24 230 690 961 2.62e-34 130
MS.gene87999.t1 AT3G22142 38.267 277 101 3 24 230 745 1021 3.50e-34 129
MS.gene87999.t1 AT3G22142 38.519 270 101 3 24 228 525 794 3.96e-34 129
MS.gene87999.t1 AT3G22142 38.516 283 104 4 18 230 644 926 4.24e-34 129
MS.gene87999.t1 AT3G22142 38.148 270 102 3 24 228 635 904 7.77e-34 129
MS.gene87999.t1 AT3G22142 41.538 260 92 3 26 225 822 1081 3.76e-33 127
MS.gene87999.t1 AT3G22142 37.857 280 99 3 24 228 755 1034 4.73e-33 126
MS.gene87999.t1 AT3G22142 38.519 270 91 3 36 230 452 721 5.06e-33 126
MS.gene87999.t1 AT3G22142 38.202 267 100 3 24 225 700 966 1.83e-32 124
MS.gene87999.t1 AT3G22142 35.430 302 100 4 24 230 455 756 6.09e-32 123
MS.gene87999.t1 AT3G22142 37.037 297 97 4 24 230 415 711 1.09e-31 122
MS.gene87999.t1 AT3G22142 40.385 260 90 3 36 230 822 1081 2.45e-31 121
MS.gene87999.t1 AT3G22142 37.801 291 96 4 25 230 401 691 2.07e-30 119
MS.gene87999.t1 AT3G22142 37.594 266 91 3 24 214 770 1035 3.18e-30 118
MS.gene87999.t1 AT3G22142 36.803 269 102 4 25 225 328 596 4.24e-30 118
MS.gene87999.t1 AT3G22142 34.000 300 103 4 24 228 360 659 1.91e-28 113
MS.gene87999.t1 AT3G22142 34.667 300 101 4 24 228 380 679 8.37e-28 111
MS.gene87999.t1 AT3G22142 34.420 276 106 7 29 230 202 476 3.92e-22 95.1
MS.gene87999.t1 AT1G54970 47.594 187 81 9 1 179 3 180 1.14e-21 92.0
MS.gene87999.t1 AT1G54970 51.049 143 59 6 86 228 29 160 2.32e-15 74.3

Find 90 sgRNAs with CRISPR-Local

Find 99 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGACTGGAGGTTTCTCAAC+TGG 0.297152 4.3:+70185659 None:intergenic
GTCGAGAAGCCACCAGTTTA+CGG 0.299440 4.3:-70185611 MS.gene87999:CDS
AACCGGAGGCTTCTCATAAT+TGG 0.299945 4.3:+70186201 None:intergenic
TGCTCTCTTTGCCATCCCTC+AGG 0.343186 4.3:-70186230 MS.gene87999:CDS
ACTACTGGTGGCTTGTAAAC+TGG 0.353333 4.3:+70185944 None:intergenic
TCAACTGGTGGCTTGTAAAC+TGG 0.353715 4.3:+70185824 None:intergenic
TATACAGGTGGCTTGTAAAC+TGG 0.355070 4.3:+70185764 None:intergenic
TACACTGGTGGTTGGTAAAC+CGG 0.382977 4.3:+70186184 None:intergenic
TCAACTGGTGGCTTGTAGAC+TGG 0.401548 4.3:+70185899 None:intergenic
TACACAGGTGGCTTCTCTAC+AGG 0.405035 4.3:+70186124 None:intergenic
CTCAACTGGAGGCTTGTAAA+CGG 0.405571 4.3:+70185718 None:intergenic
TAAACTGGAGGCTTCTCGAC+TGG 0.411430 4.3:+70185839 None:intergenic
TCAACTGGTGGCTTATACAC+TGG 0.412257 4.3:+70186169 None:intergenic
TAAACAGGAGGTTTGTAAAC+CGG 0.417330 4.3:+70186034 None:intergenic
TACACCGGTGGCTTGTAAAC+AGG 0.419007 4.3:+70186019 None:intergenic
TAGACTGGAGGCTTCTCAAC+TGG 0.423306 4.3:+70185704 None:intergenic
AGACTGGAGGTTTCTCAACT+GGG 0.425047 4.3:+70185660 None:intergenic
TGGTGAGGAGGTCCGTAAAC+TGG 0.427954 4.3:+70185599 None:intergenic
TAAACTGGTGGCTTCTCGAC+TGG 0.430061 4.3:+70185614 None:intergenic
TAGACTGGAGGCTTCTCAAC+TGG 0.434291 4.3:+70185884 None:intergenic
TCGACTGGAGGCTTGTAAAC+TGG 0.436990 4.3:+70185629 None:intergenic
TACACCGGAGGCTTGTAAAC+AGG 0.441057 4.3:+70185794 None:intergenic
TAAACTGGTGGCTTGTAGAC+TGG 0.441265 4.3:+70185644 None:intergenic
TAAACGGGTGGCTTGTAGAC+TGG 0.441414 4.3:+70185734 None:intergenic
TAAACAGGTGGCTTGTAGAC+TGG 0.443434 4.3:+70185689 None:intergenic
TAAACAGGTGGCTTGTAGAC+TGG 0.443434 4.3:+70185869 None:intergenic
TATACCGGAGGCTTGTAAAC+AGG 0.449409 4.3:+70185974 None:intergenic
AAACTGGAGGCTTCTCGACT+GGG 0.451750 4.3:+70185840 None:intergenic
TAAACAGGAGGCTTCTCAAC+TGG 0.459812 4.3:+70185809 None:intergenic
TAAACAGGAGGCTTCTCAAC+TGG 0.459812 4.3:+70185989 None:intergenic
TCAACTGGTGGCTTGTACAC+CGG 0.460751 4.3:+70186004 None:intergenic
TATACAGGTGGCTTCACTAC+TGG 0.464722 4.3:+70185929 None:intergenic
GCTCTCTTTGCCATCCCTCA+GGG 0.469699 4.3:-70186229 MS.gene87999:CDS
TAGACTGGAGGCTTGTATAC+AGG 0.470954 4.3:+70185749 None:intergenic
TAGACTGGAGGCTTGTATAC+AGG 0.470954 4.3:+70185914 None:intergenic
TCAACTGGAGGCTTGTAAAC+GGG 0.476504 4.3:+70185719 None:intergenic
GCCTCCTGTTTACAAGCCTC+CGG 0.502841 4.3:-70185798 MS.gene87999:CDS
GCCTCCTGTTTACAAGCCTC+CGG 0.504860 4.3:-70185978 MS.gene87999:CDS
AAACAGGAGGTTTGTAAACC+GGG 0.508037 4.3:+70186035 None:intergenic
TACACAGGTGGCTTATACAC+AGG 0.513962 4.3:+70186109 None:intergenic
TAAACTGGAGGCTTGTACAC+CGG 0.514976 4.3:+70185779 None:intergenic
AAGCAGCACAAGGAAGTTTG+AGG 0.519715 4.3:+70186258 None:intergenic
TAAACTGGAGGCTTGTATAC+CGG 0.526226 4.3:+70185959 None:intergenic
GACTGGAGGTTTCTCAACTG+GGG 0.534766 4.3:+70185661 None:intergenic
TGCCAATTATGAGAAGCCTC+CGG 0.542771 4.3:-70186203 MS.gene87999:CDS
ACACAGGTGGCTTCTCTACA+GGG 0.554240 4.3:+70186125 None:intergenic
GGGAACTATGGGTGGTGAGG+AGG 0.563963 4.3:+70185587 None:intergenic
AACTGGAGGCTTCTCGACTG+GGG 0.573125 4.3:+70185841 None:intergenic
ACTGGAGGTTTCTCAACTGG+GGG 0.581297 4.3:+70185662 None:intergenic
CGAGGGAACTATGGGTGGTG+AGG 0.583741 4.3:+70185584 None:intergenic
ACCTCCTGTTTACAAGCCAC+CGG 0.585895 4.3:-70186023 MS.gene87999:CDS
ACTGGAGGCTTCTCAACTGG+TGG 0.597757 4.3:+70185887 None:intergenic
ACAGGTGGCTTCACTACTGG+TGG 0.613745 4.3:+70185932 None:intergenic
ACTGGAGGCTTCTCGACTGG+GGG 0.614813 4.3:+70185842 None:intergenic
ACTGGTGGCTTCTCGACTGG+AGG 0.616423 4.3:+70185617 None:intergenic
AACAGGAGGTTTGTAAACCG+GGG 0.616438 4.3:+70186036 None:intergenic
ATTGGCAAGACCCTGAGGGA+TGG 0.618854 4.3:+70186219 None:intergenic
ACTGGTGGCTTGTAGACTGG+AGG 0.619678 4.3:+70185902 None:intergenic
TCATAATTGGCAAGACCCTG+AGG 0.625117 4.3:+70186214 None:intergenic
ACTGGAGGCTTGTAAACTGG+TGG 0.629358 4.3:+70185632 None:intergenic
GCCACCTGTGTACAAGCCCC+CGG 0.630519 4.3:-70186098 MS.gene87999:CDS
ACTGGTGGCTTATACACTGG+TGG 0.631560 4.3:+70186172 None:intergenic
ACCGGTGGCTTGTAAACAGG+AGG 0.639427 4.3:+70186022 None:intergenic
TGAGGAGGTCCGTAAACTGG+TGG 0.639666 4.3:+70185602 None:intergenic
CATAATTGGCAAGACCCTGA+GGG 0.639762 4.3:+70186215 None:intergenic
ACAGGAGGCTTCTCAACTGG+TGG 0.640818 4.3:+70185812 None:intergenic
ACAGGAGGCTTCTCAACTGG+TGG 0.640818 4.3:+70185992 None:intergenic
ACCGGAGGCTTGTAAACAGG+AGG 0.642069 4.3:+70185977 None:intergenic
ACAGGTGGCTTCTCTACAGG+GGG 0.643712 4.3:+70186127 None:intergenic
ACTGGTGGCTTGTACACCGG+TGG 0.645745 4.3:+70186007 None:intergenic
ACTGGAGGCTTCTCAACTGG+AGG 0.646341 4.3:+70185707 None:intergenic
ACCGGAGGCTTGTAAACAGG+AGG 0.649300 4.3:+70185797 None:intergenic
ACTGGAGGCTTGTAAACGGG+TGG 0.650242 4.3:+70185722 None:intergenic
GTGGCTTATACACTGGTGGT+TGG 0.651466 4.3:+70186176 None:intergenic
ACTGGTGGCTTGTAGACTGG+AGG 0.655799 4.3:+70185647 None:intergenic
CTACCCGAGGGAACTATGGG+TGG 0.657162 4.3:+70185579 None:intergenic
ACTGGTGGCTTGTAAACTGG+AGG 0.657686 4.3:+70185827 None:intergenic
CACAGGTGGCTTCTCTACAG+GGG 0.659499 4.3:+70186126 None:intergenic
ACTGGAGGCTTGTATACAGG+TGG 0.663475 4.3:+70185752 None:intergenic
ACTGGAGGCTTGTATACAGG+TGG 0.663475 4.3:+70185917 None:intergenic
ACAGGAGGTTTGTAAACCGG+GGG 0.670551 4.3:+70186037 None:intergenic
ACTGGAGGCTTGTATACCGG+AGG 0.673497 4.3:+70185962 None:intergenic
ACGGGTGGCTTGTAGACTGG+AGG 0.678574 4.3:+70185737 None:intergenic
ACTGGTGGCTTGTAAACTGG+AGG 0.680586 4.3:+70185947 None:intergenic
ACAGGTGGCTTGTAGACTGG+AGG 0.680593 4.3:+70185692 None:intergenic
ACAGGTGGCTTGTAGACTGG+AGG 0.680593 4.3:+70185872 None:intergenic
ACTGGAGGCTTGTACACCGG+AGG 0.680728 4.3:+70185782 None:intergenic
ACAGGTGGCTTGTAAACTGG+AGG 0.685781 4.3:+70185767 None:intergenic
ACAGGTGGCTTATACACAGG+TGG 0.704202 4.3:+70186112 None:intergenic
ACTGGTGGTTGGTAAACCGG+AGG 0.711189 4.3:+70186187 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
TAAACAGGAGGTTTGTAAAC+CGG + chr4.3:70185826-70185845 None:intergenic 35.0%
AAACAGGAGGTTTGTAAACC+GGG + chr4.3:70185825-70185844 None:intergenic 40.0%
TAAACTGGAGGCTTGTATAC+CGG + chr4.3:70185901-70185920 None:intergenic 40.0%
! TATACAGGTGGCTTGTAAAC+TGG + chr4.3:70186096-70186115 None:intergenic 40.0%
AACAGGAGGTTTGTAAACCG+GGG + chr4.3:70185824-70185843 None:intergenic 45.0%
AACCGGAGGCTTCTCATAAT+TGG + chr4.3:70185659-70185678 None:intergenic 45.0%
AAGCAGCACAAGGAAGTTTG+AGG + chr4.3:70185602-70185621 None:intergenic 45.0%
AGACTGGAGGTTTCTCAACT+GGG + chr4.3:70186200-70186219 None:intergenic 45.0%
CATAATTGGCAAGACCCTGA+GGG + chr4.3:70185645-70185664 None:intergenic 45.0%
CTCAACTGGAGGCTTGTAAA+CGG + chr4.3:70186142-70186161 None:intergenic 45.0%
GAGCAAAAAGAAGCAGCACA+AGG + chr4.3:70185612-70185631 None:intergenic 45.0%
TAAACAGGAGGCTTCTCAAC+TGG + chr4.3:70185871-70185890 None:intergenic 45.0%
TAAACTGGAGGCTTGTACAC+CGG + chr4.3:70186081-70186100 None:intergenic 45.0%
TACACAGGTGGCTTATACAC+AGG + chr4.3:70185751-70185770 None:intergenic 45.0%
TAGACTGGAGGCTTGTATAC+AGG + chr4.3:70185946-70185965 None:intergenic 45.0%
TAGACTGGAGGTTTCTCAAC+TGG + chr4.3:70186201-70186220 None:intergenic 45.0%
TATACAGGTGGCTTCACTAC+TGG + chr4.3:70185931-70185950 None:intergenic 45.0%
TATACCGGAGGCTTGTAAAC+AGG + chr4.3:70185886-70185905 None:intergenic 45.0%
TCAACTGGAGGCTTGTAAAC+GGG + chr4.3:70186141-70186160 None:intergenic 45.0%
TCAACTGGTGGCTTATACAC+TGG + chr4.3:70185691-70185710 None:intergenic 45.0%
TCATAATTGGCAAGACCCTG+AGG + chr4.3:70185646-70185665 None:intergenic 45.0%
TGCCAATTATGAGAAGCCTC+CGG - chr4.3:70185654-70185673 MS.gene87999:CDS 45.0%
! ACTACTGGTGGCTTGTAAAC+TGG + chr4.3:70185916-70185935 None:intergenic 45.0%
! TAAACAGGTGGCTTGTAGAC+TGG + chr4.3:70185991-70186010 None:intergenic 45.0%
! TAAACTGGTGGCTTGTAGAC+TGG + chr4.3:70186216-70186235 None:intergenic 45.0%
! TACACAGGTGGCTTTTCTAC+CGG + chr4.3:70185781-70185800 None:intergenic 45.0%
! TCAACTGGTGGCTTGTAAAC+TGG + chr4.3:70186036-70186055 None:intergenic 45.0%
!! TACACTGGTGGTTGGTAAAC+CGG + chr4.3:70185676-70185695 None:intergenic 45.0%
AAACTGGAGGCTTCTCGACT+GGG + chr4.3:70186020-70186039 None:intergenic 50.0%
ACACAGGTGGCTTCTCTACA+GGG + chr4.3:70185735-70185754 None:intergenic 50.0%
ACAGGAGGTTTGTAAACCGG+GGG + chr4.3:70185823-70185842 None:intergenic 50.0%
ACAGGTGGCTTATACACAGG+TGG + chr4.3:70185748-70185767 None:intergenic 50.0%
ACCTCCTGTTTACAAGCCAC+CGG - chr4.3:70185834-70185853 MS.gene87999:CDS 50.0%
ACTGGAGGCTTGTAAACTGG+TGG + chr4.3:70186228-70186247 None:intergenic 50.0%
ACTGGAGGCTTGTATACAGG+TGG + chr4.3:70185943-70185962 None:intergenic 50.0%
ACTGGAGGTTTCTCAACTGG+GGG + chr4.3:70186198-70186217 None:intergenic 50.0%
ACTGGTGGCTTATACACTGG+TGG + chr4.3:70185688-70185707 None:intergenic 50.0%
CTACAGGGGGTTTGTAGACA+GGG + chr4.3:70185720-70185739 None:intergenic 50.0%
GACTGGAGGTTTCTCAACTG+GGG + chr4.3:70186199-70186218 None:intergenic 50.0%
GTCGAGAAGCCACCAGTTTA+CGG - chr4.3:70186246-70186265 MS.gene87999:CDS 50.0%
GTGGCTTATACACTGGTGGT+TGG + chr4.3:70185684-70185703 None:intergenic 50.0%
TAAACTGGAGGCTTCTCGAC+TGG + chr4.3:70186021-70186040 None:intergenic 50.0%
TAAACTGGTGGCTTCTCGAC+TGG + chr4.3:70186246-70186265 None:intergenic 50.0%
TACACAGGTGGCTTCTCTAC+AGG + chr4.3:70185736-70185755 None:intergenic 50.0%
TACACCGGAGGCTTGTAAAC+AGG + chr4.3:70186066-70186085 None:intergenic 50.0%
TACAGGGGGTTTGTAGACAG+GGG + chr4.3:70185719-70185738 None:intergenic 50.0%
TAGACAGGGGGTTTCTCAAC+TGG + chr4.3:70185706-70185725 None:intergenic 50.0%
TAGACTGGAGGCTTCTCAAC+TGG + chr4.3:70185976-70185995 None:intergenic 50.0%
TCAACTGGGGGCTTGTAAAC+AGG + chr4.3:70186186-70186205 None:intergenic 50.0%
TCGACTGGAGGCTTGTAAAC+TGG + chr4.3:70186231-70186250 None:intergenic 50.0%
TCTACAGGGGGTTTGTAGAC+AGG + chr4.3:70185721-70185740 None:intergenic 50.0%
! ACACAGGTGGCTTTTCTACC+GGG + chr4.3:70185780-70185799 None:intergenic 50.0%
! ACAGGTGGCTTGTAAACTGG+AGG + chr4.3:70186093-70186112 None:intergenic 50.0%
! ACTGGTGGCTTGTAAACTGG+AGG + chr4.3:70185913-70185932 None:intergenic 50.0%
! TAAACGGGTGGCTTGTAGAC+TGG + chr4.3:70186126-70186145 None:intergenic 50.0%
! TACACCGGTGGCTTGTAAAC+AGG + chr4.3:70185841-70185860 None:intergenic 50.0%
! TCAACTGGTGGCTTGTACAC+CGG + chr4.3:70185856-70185875 None:intergenic 50.0%
! TCAACTGGTGGCTTGTAGAC+TGG + chr4.3:70185961-70185980 None:intergenic 50.0%
AAACCGGGGGTTTCACGACA+GGG + chr4.3:70185810-70185829 None:intergenic 55.0%
AACTGGAGGCTTCTCGACTG+GGG + chr4.3:70186019-70186038 None:intergenic 55.0%
ACAGGAGGCTTCTCAACTGG+TGG + chr4.3:70185868-70185887 None:intergenic 55.0%
ACAGGGGGTTTCTCAACTGG+TGG + chr4.3:70185703-70185722 None:intergenic 55.0%
ACAGGGGGTTTGTACACAGG+TGG + chr4.3:70185793-70185812 None:intergenic 55.0%
ACAGGGGGTTTGTAGACAGG+GGG + chr4.3:70185718-70185737 None:intergenic 55.0%
ACAGGTGGCTTCACTACTGG+TGG + chr4.3:70185928-70185947 None:intergenic 55.0%
ACAGGTGGCTTCTCTACAGG+GGG + chr4.3:70185733-70185752 None:intergenic 55.0%
ACCGGAGGCTTGTAAACAGG+AGG + chr4.3:70185883-70185902 None:intergenic 55.0%
ACGACAGGGGGTTTGTACAC+AGG + chr4.3:70185796-70185815 None:intergenic 55.0%
ACTGGAGGCTTCTCAACTGG+AGG + chr4.3:70185973-70185992 None:intergenic 55.0%
ACTGGAGGCTTCTCAACTGG+TGG + chr4.3:70185973-70185992 None:intergenic 55.0%
ACTGGAGGCTTGTAAACGGG+TGG + chr4.3:70186138-70186157 None:intergenic 55.0%
ACTGGAGGCTTGTATACCGG+AGG + chr4.3:70185898-70185917 None:intergenic 55.0%
ACTGGGGGCTTGTAAACAGG+TGG + chr4.3:70186003-70186022 None:intergenic 55.0%
ATTGGCAAGACCCTGAGGGA+TGG + chr4.3:70185641-70185660 None:intergenic 55.0%
CACAGGTGGCTTCTCTACAG+GGG + chr4.3:70185734-70185753 None:intergenic 55.0%
GCCTCCTGTTTACAAGCCTC+CGG - chr4.3:70185879-70185898 MS.gene87999:CDS 55.0%
GCTCTCTTTGCCATCCCTCA+GGG - chr4.3:70185628-70185647 MS.gene87999:CDS 55.0%
TAAACCGGGGGTTTCACGAC+AGG + chr4.3:70185811-70185830 None:intergenic 55.0%
TCGACTGGGGGCTTGTAAAC+AGG + chr4.3:70186006-70186025 None:intergenic 55.0%
TGAGGAGGTCCGTAAACTGG+TGG + chr4.3:70186258-70186277 None:intergenic 55.0%
TGCTCTCTTTGCCATCCCTC+AGG - chr4.3:70185627-70185646 MS.gene87999:CDS 55.0%
TGGTGAGGAGGTCCGTAAAC+TGG + chr4.3:70186261-70186280 None:intergenic 55.0%
! ACAGGTGGCTTGTAGACTGG+AGG + chr4.3:70185988-70186007 None:intergenic 55.0%
! ACAGGTGGCTTTTCTACCGG+GGG + chr4.3:70185778-70185797 None:intergenic 55.0%
! ACCGGTGGCTTGTAAACAGG+AGG + chr4.3:70185838-70185857 None:intergenic 55.0%
! ACTGGTGGCTTGTAGACTGG+AGG + chr4.3:70185958-70185977 None:intergenic 55.0%
! CACAGGTGGCTTTTCTACCG+GGG + chr4.3:70185779-70185798 None:intergenic 55.0%
!! ACTGGTGGTTGGTAAACCGG+AGG + chr4.3:70185673-70185692 None:intergenic 55.0%
AACCGGGGGTTTCACGACAG+GGG + chr4.3:70185809-70185828 None:intergenic 60.0%
ACTGGAGGCTTCTCGACTGG+GGG + chr4.3:70186018-70186037 None:intergenic 60.0%
ACTGGAGGCTTGTACACCGG+AGG + chr4.3:70186078-70186097 None:intergenic 60.0%
ACTGGTGGCTTCTCGACTGG+AGG + chr4.3:70186243-70186262 None:intergenic 60.0%
TCTACCGGGGGCTTGTACAC+AGG + chr4.3:70185766-70185785 None:intergenic 60.0%
! ACGGGTGGCTTGTAGACTGG+AGG + chr4.3:70186123-70186142 None:intergenic 60.0%
! ACTGGTGGCTTGTACACCGG+TGG + chr4.3:70185853-70185872 None:intergenic 60.0%
ACCCCCTGTCGTGAAACCCC+CGG - chr4.3:70185804-70185823 MS.gene87999:CDS 65.0%
ACCGGGGGCTTGTACACAGG+TGG + chr4.3:70185763-70185782 None:intergenic 65.0%
ACCGGGGGTTTCACGACAGG+GGG + chr4.3:70185808-70185827 None:intergenic 65.0%
GCCACCTGTGTACAAGCCCC+CGG - chr4.3:70185759-70185778 MS.gene87999:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 70185592 70186287 70185592 ID=MS.gene87999
chr4.3 mRNA 70185592 70186287 70185592 ID=MS.gene87999.t1;Parent=MS.gene87999
chr4.3 exon 70185592 70186287 70185592 ID=MS.gene87999.t1.exon1;Parent=MS.gene87999.t1
chr4.3 CDS 70185592 70186287 70185592 ID=cds.MS.gene87999.t1;Parent=MS.gene87999.t1
Gene Sequence

>MS.gene87999

ATGGCTTCCTCAAACTTCCTTGTGCTGCTTCTTTTTGCTCTCTTTGCCATCCCTCAGGGTCTTGCCAATTATGAGAAGCCTCCGGTTTACCAACCACCAGTGTATAAGCCACCAGTTGAGAAACCCCCTGTCTACAAACCCCCTGTAGAGAAGCCACCTGTGTATAAGCCACCTGTGTACAAGCCCCCGGTAGAAAAGCCACCTGTGTACAAACCCCCTGTCGTGAAACCCCCGGTTTACAAACCTCCTGTTTACAAGCCACCGGTGTACAAGCCACCAGTTGAGAAGCCTCCTGTTTACAAGCCTCCGGTATACAAGCCTCCAGTTTACAAGCCACCAGTAGTGAAGCCACCTGTATACAAGCCTCCAGTCTACAAGCCACCAGTTGAGAAGCCTCCAGTCTACAAGCCACCTGTTTACAAGCCCCCAGTCGAGAAGCCTCCAGTTTACAAGCCACCAGTTGAGAAGCCTCCTGTTTACAAGCCTCCGGTGTACAAGCCTCCAGTTTACAAGCCACCTGTATACAAGCCTCCAGTCTACAAGCCACCCGTTTACAAGCCTCCAGTTGAGAAGCCTCCAGTCTACAAGCCACCTGTTTACAAGCCCCCAGTTGAGAAACCTCCAGTCTACAAGCCACCAGTTTACAAGCCTCCAGTCGAGAAGCCACCAGTTTACGGACCTCCTCACCACCCATAG
Protein sequence

>MS.gene87999.t1

MASSNFLVLLLFALFAIPQGLANYEKPPVYQPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVVKPPVYKPPVYKPPVYKPPVEKPPVYKPPVYKPPVYKPPVVKPPVYKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVEKPPVYKPPVYKPPVYKPPVYKPPVYKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYKPPVYKPPVEKPPVYGPPHHP