AlfalfaGEDB | MS.gene88024

M. sativa cultivar XinJiangDaYe / MS.gene88024

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88024.t1	XP_004492881.1	40.1	177	76	3	25	172	74	249	2.20E-16	95.9

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88024.t1	A0A392LY79	48.9	182	73	4	12	181	203	376	5.1e-31	144.1

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049260	MS.gene88024	-0.809569	1.77E-50	-1.69E-46
MS.gene050226	MS.gene88024	-0.811471	6.89E-51	-1.69E-46
MS.gene050227	MS.gene88024	-0.816151	6.41E-52	-1.69E-46
MS.gene050228	MS.gene88024	-0.82753	1.49E-54	-1.69E-46
MS.gene050330	MS.gene88024	0.811489	6.83E-51	-1.69E-46
MS.gene050623	MS.gene88024	0.828949	6.76E-55	-1.69E-46
MS.gene050807	MS.gene88024	-0.827212	1.77E-54	-1.69E-46
MS.gene050987	MS.gene88024	-0.806516	7.92E-50	-1.69E-46
MS.gene051243	MS.gene88024	-0.800343	1.51E-48	-1.69E-46
MS.gene052176	MS.gene88024	-0.817393	3.37E-52	-1.69E-46

Showing 1 to 10 of 19 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene88024.t1	MTR_7g081150	42.000	100	49	2	53	152	212	302	2.07e-13	67.8

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 38 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGGACAACCTGAGCA+AGG	0.646626	4.3:+69765526	None:intergenic
ACAAATAAACACCATAAAAC+CGG	0.436981	4.3:+69765511	None:intergenic
ACGCAGAGAAAGACAATCAA+AGG	0.571451	4.3:-69765751	MS.gene88024:CDS
AGAAATCTATGCTTATCTTT+TGG	0.235647	4.3:-69765442	MS.gene88024:CDS
AGATTGGAAGTAAGGTTTCA+AGG	0.495918	4.3:+69765777	None:intergenic
AGGACGGCCATATGGAAAGG+CGG	0.693360	4.3:+69765546	None:intergenic
AGGTTTCAAGGTCTATTGGT+AGG	0.553409	4.3:+69765789	None:intergenic
AGTAAGGTTTCAAGGTCTAT+TGG	0.404978	4.3:+69765785	None:intergenic
ATGTAACATGTTGTCCCTCC+CGG	0.524389	4.3:-69765720	MS.gene88024:CDS
ATGTGCAGTCCATTGTTATC+CGG	0.415512	4.3:+69765701	None:intergenic

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATTCATACATAGCATAGAG+GGG	+	chr4.3:69765497-69765516	None:intergenic	30.0%
GAAATTCATACATAGCATAG+AGG	+	chr4.3:69765499-69765518	None:intergenic	30.0%
GATGACATTTATCATTCCTT+TGG	-	chr4.3:69765372-69765391	MS.gene88024:CDS	30.0%
GGAAATAAAAACAAGGAGAT+TGG	+	chr4.3:69765702-69765721	None:intergenic	30.0%
TGATTGAAGATGCAACAAAA+TGG	+	chr4.3:69765918-69765937	None:intergenic	30.0%
TGTTGCAGGAAATAAAAACA+AGG	+	chr4.3:69765709-69765728	None:intergenic	30.0%
TTATTGATCACATCTTCATC+TGG	+	chr4.3:69766022-69766041	None:intergenic	30.0%
AGATTGGAAGTAAGGTTTCA+AGG	+	chr4.3:69765559-69765578	None:intergenic	35.0%
AGTAAGGTTTCAAGGTCTAT+TGG	+	chr4.3:69765551-69765570	None:intergenic	35.0%
CGGTAACTTAACAATTACTC+TGG	-	chr4.3:69765289-69765308	MS.gene88024:CDS	35.0%

Showing 1 to 10 of 61 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	69765277	69766078	69765277	ID=MS.gene88024
chr4.3	mRNA	69765277	69766078	69765277	ID=MS.gene88024.t1;Parent=MS.gene88024
chr4.3	exon	69766065	69766078	69766065	ID=MS.gene88024.t1.exon1;Parent=MS.gene88024.t1
chr4.3	CDS	69766065	69766078	69766065	ID=cds.MS.gene88024.t1;Parent=MS.gene88024.t1
chr4.3	exon	69765912	69765924	69765912	ID=MS.gene88024.t1.exon2;Parent=MS.gene88024.t1
chr4.3	CDS	69765912	69765924	69765912	ID=cds.MS.gene88024.t1;Parent=MS.gene88024.t1
chr4.3	exon	69765277	69765834	69765277	ID=MS.gene88024.t1.exon3;Parent=MS.gene88024.t1
chr4.3	CDS	69765277	69765834	69765277	ID=cds.MS.gene88024.t1;Parent=MS.gene88024.t1

Gene Sequence

>MS.gene88024

ATGAAGATGTTTCGGTAACTTAACAATTACTCTGGTTATTTTATAACCTTCATGATGGATATTTTTTCACTTATTCTACTAATTTCTTAAACTTAGATGACATTTATCATTCCTTTGGCCCTCTAATTTGACTTCTATTTGTGTTATGATGTAGGATTCATCTAAAAGTATGTGTATGTTGTATTACTAATTCTGATGAGATTTATCTTTCCATTGACCCCTCTATGCTATGTATGAATTTCAGCGTGATTTTGTAGAGTGCTACTGCCTACCAATAGACCTTGAAACCTTACTTCCAATCTATCACGCAGAGAAAGACAATCAAAGGAGCTTAACATGTAACATGTTGTCCCTCCCGGATAACAATGGACTGCACATGCGTATGAAAATCATCCAATGGCTTTCATCTTATGCACTCTCAACCAATCTCCTTGTTTTTATTTCCTGCAACATATGGAGCAGCATATCATCAGTTATCCATGTCCCTCCACTCCACAAAAAATGGGATGACCGCCTTTCCATATGGCCGTCCTTGCTCAGGTTGTCCGGTTTTATGGTGTTTATTTGTGCCGTTGCTGCAATGGTTCTTGTCCGTGCACCTTTCACGAGTATGCAGAAATCTATGCTTATCTTTTGGGCCATTTTGTTGCATCTTCAATCAGCTAACTCTATCATCGATGTATTTCTTACATTAGTCCTTGCACTTCTAGTGATATGGCATGCTTTCGGGAAAAAGCAACCACCAGATGAAGATGTGATCAATAAGTATGCCAATAAGTTGCCAATCTGCCAGTCTTTTTAG

Protein sequence

>MS.gene88024.t1

MKMFRIHLKRDFVECYCLPIDLETLLPIYHAEKDNQRSLTCNMLSLPDNNGLHMRMKIIQWLSSYALSTNLLVFISCNIWSSISSVIHVPPLHKKWDDRLSIWPSLLRLSGFMVFICAVAAMVLVRAPFTSMQKSMLIFWAILLHLQSANSIIDVFLTLVLALLVIWHAFGKKQPPDEDVINKYANKLPICQSF