Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88178.t1 | XP_024636347.1 | 85.9 | 637 | 73 | 5 | 12 | 637 | 1 | 631 | 9.90E-308 | 1065.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88178.t1 | F4JJT9 | 70.0 | 597 | 161 | 5 | 52 | 635 | 70 | 661 | 1.2e-240 | 833.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88178.t1 | G7JHA2 | 82.8 | 647 | 95 | 7 | 1 | 636 | 1 | 642 | 3.4e-294 | 1020.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030419 | MS.gene88178 | PPI |
| MS.gene71948 | MS.gene88178 | PPI |
| MS.gene050373 | MS.gene88178 | PPI |
| MS.gene72164 | MS.gene88178 | PPI |
| MS.gene048788 | MS.gene88178 | PPI |
| MS.gene072797 | MS.gene88178 | PPI |
| MS.gene62901 | MS.gene88178 | PPI |
| MS.gene015567 | MS.gene88178 | PPI |
| MS.gene47111 | MS.gene88178 | PPI |
| MS.gene011533 | MS.gene88178 | PPI |
| MS.gene55470 | MS.gene88178 | PPI |
| MS.gene88178 | MS.gene074123 | PPI |
| MS.gene070324 | MS.gene88178 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88178.t1 | MTR_4g052070 | 85.781 | 647 | 76 | 7 | 1 | 636 | 1 | 642 | 0.0 | 1111 |
| MS.gene88178.t1 | MTR_4g120810 | 79.341 | 668 | 100 | 9 | 1 | 636 | 1 | 662 | 0.0 | 1052 |
| MS.gene88178.t1 | MTR_8g104740 | 78.806 | 670 | 102 | 9 | 1 | 636 | 1 | 664 | 0.0 | 1041 |
| MS.gene88178.t1 | MTR_1g113700 | 76.380 | 652 | 94 | 6 | 1 | 636 | 1 | 608 | 0.0 | 978 |
| MS.gene88178.t1 | MTR_4g120810 | 77.181 | 596 | 98 | 9 | 1 | 564 | 1 | 590 | 0.0 | 908 |
| MS.gene88178.t1 | MTR_8g104740 | 76.923 | 598 | 98 | 9 | 1 | 564 | 1 | 592 | 0.0 | 900 |
| MS.gene88178.t1 | MTR_8g104740 | 86.123 | 454 | 44 | 3 | 200 | 636 | 1 | 452 | 0.0 | 797 |
| MS.gene88178.t1 | MTR_8g104740 | 83.387 | 313 | 35 | 2 | 269 | 564 | 1 | 313 | 0.0 | 531 |
| MS.gene88178.t1 | MTR_8g007295 | 28.571 | 189 | 115 | 5 | 193 | 362 | 209 | 396 | 1.20e-13 | 73.9 |
| MS.gene88178.t1 | MTR_8g007295 | 28.571 | 189 | 115 | 5 | 193 | 362 | 209 | 396 | 1.92e-13 | 73.9 |
| MS.gene88178.t1 | MTR_4g127770 | 24.490 | 147 | 109 | 2 | 184 | 330 | 241 | 385 | 6.88e-12 | 69.3 |
| MS.gene88178.t1 | MTR_4g127770 | 24.828 | 145 | 107 | 2 | 184 | 328 | 728 | 870 | 1.50e-11 | 68.2 |
| MS.gene88178.t1 | MTR_4g127790 | 24.490 | 147 | 109 | 2 | 184 | 330 | 39 | 183 | 1.33e-11 | 67.4 |
| MS.gene88178.t1 | MTR_1g014140 | 29.719 | 249 | 119 | 12 | 88 | 305 | 110 | 333 | 1.40e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88178.t1 | AT4G33760 | 70.017 | 597 | 161 | 5 | 52 | 635 | 70 | 661 | 0.0 | 866 |
| MS.gene88178.t1 | AT4G33760 | 70.189 | 530 | 140 | 5 | 119 | 635 | 1 | 525 | 0.0 | 768 |
| MS.gene88178.t1 | AT4G26870 | 28.173 | 323 | 168 | 14 | 69 | 348 | 84 | 385 | 1.61e-11 | 67.8 |
| MS.gene88178.t1 | AT3G11710 | 24.828 | 145 | 107 | 2 | 184 | 328 | 259 | 401 | 5.37e-11 | 66.2 |
Find 145 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCAAAGATAACGCTTTA+AGG | 0.233750 | 4.4:-50447126 | None:intergenic |
| AGGGATTGGTTGAGGGGTTT+AGG | 0.249411 | 4.4:-50447244 | None:intergenic |
| GTTTATGTGGCACATAAATT+AGG | 0.258848 | 4.4:+50450017 | MS.gene88178:CDS |
| TCCTGATTTAGTATCAAGTA+TGG | 0.280023 | 4.4:+50449881 | MS.gene88178:intron |
| TTTGTAAGTGAGTGGTATTT+TGG | 0.286072 | 4.4:-50447179 | None:intergenic |
| TCGGCTCGTGCATTGGCTTA+TGG | 0.301340 | 4.4:+50450351 | MS.gene88178:CDS |
| CCATTCAAGGTGTTGTTGTT+AGG | 0.306027 | 4.4:+50447488 | MS.gene88178:CDS |
| AAACCGTTCGTCTTTGTGGC+TGG | 0.312318 | 4.4:+50447323 | MS.gene88178:CDS |
| AACAATTCCTCTGTAGTTGC+AGG | 0.313116 | 4.4:-50449906 | None:intergenic |
| TTCATCTTGTTGTTGATTGA+TGG | 0.313716 | 4.4:-50447523 | None:intergenic |
| AGACCACACCGGCATTATTC+AGG | 0.315831 | 4.4:+50447393 | MS.gene88178:CDS |
| CTCAAATGGATTTCCTCTTT+AGG | 0.317082 | 4.4:-50447655 | None:intergenic |
| GGAATCAGAGAAAATCTTAA+AGG | 0.317457 | 4.4:-50449685 | None:intergenic |
| TCTAGATCAAATCTGGTATC+TGG | 0.318832 | 4.4:-50449285 | None:intergenic |
| TGAGTTCACACAACTGGATA+TGG | 0.319067 | 4.4:+50448804 | MS.gene88178:CDS |
| TCATCAGAATTCAAAACTTT+AGG | 0.321424 | 4.4:-50447619 | None:intergenic |
| TAACCACATACTCGCGTCTT+AGG | 0.328017 | 4.4:-50447465 | None:intergenic |
| GCAAGGTTGTTCATGTCTTC+CGG | 0.333869 | 4.4:-50450327 | None:intergenic |
| GGCAAAACCGTTCGTCTTTG+TGG | 0.336621 | 4.4:+50447319 | MS.gene88178:CDS |
| GGTATCGATGTCTTGATCTA+AGG | 0.337704 | 4.4:+50448019 | MS.gene88178:intron |
| GCTGAAGCAATGAATATATA+TGG | 0.340579 | 4.4:+50449252 | MS.gene88178:CDS |
| TTGTTCATGTCTTCCGGATT+TGG | 0.340841 | 4.4:-50450321 | None:intergenic |
| AATACAGGAGGCATAGCTTT+TGG | 0.342178 | 4.4:+50451090 | MS.gene88178:intron |
| TTGCAGGCTGAAGCGAAGTT+TGG | 0.355919 | 4.4:+50450807 | MS.gene88178:intron |
| CTAAATACCTGGGTTCTTGA+TGG | 0.368486 | 4.4:-50448309 | None:intergenic |
| GAATTATCTTCCAACGATAT+CGG | 0.370772 | 4.4:+50447298 | MS.gene88178:CDS |
| TCCTTTCACTGCACCAAATC+CGG | 0.379058 | 4.4:+50450308 | MS.gene88178:CDS |
| TAGCTGGTGTTAATTCAATC+AGG | 0.385416 | 4.4:+50451136 | MS.gene88178:CDS |
| AGGTTCAAGAGTTGAATTCT+AGG | 0.386972 | 4.4:+50447575 | MS.gene88178:CDS |
| ACTAAGGCTATTACCTCAAA+TGG | 0.390022 | 4.4:-50447669 | None:intergenic |
| TTAAATATCTGAGGGCTTTG+TGG | 0.390683 | 4.4:-50448498 | None:intergenic |
| TGAAAGATCTCTCAGCTGTT+GGG | 0.399562 | 4.4:-50451229 | None:intergenic |
| TTGAAATCCATTGGAGGGAT+TGG | 0.404371 | 4.4:-50447258 | None:intergenic |
| TACAATGAAGCATACAAATC+TGG | 0.410761 | 4.4:+50449783 | MS.gene88178:CDS |
| GAATCATTCCACTCAAACAT+TGG | 0.412892 | 4.4:-50450178 | None:intergenic |
| TGCTTCAGCATATGTAAGCC+TGG | 0.420918 | 4.4:-50449238 | None:intergenic |
| GATATTTAAGCAAATGCTAA+TGG | 0.421115 | 4.4:+50448512 | MS.gene88178:CDS |
| TCCATTGGAGGGATTGGTTG+AGG | 0.425023 | 4.4:-50447252 | None:intergenic |
| AATCCACAAAATTGAATGTC+TGG | 0.427154 | 4.4:-50450146 | None:intergenic |
| TAAACGCGACATACAACAAA+AGG | 0.428071 | 4.4:+50450563 | MS.gene88178:CDS |
| CCATTGGAGGGATTGGTTGA+GGG | 0.439318 | 4.4:-50447251 | None:intergenic |
| CCTTGCATCGGCTCGTGCAT+TGG | 0.439535 | 4.4:+50450344 | MS.gene88178:CDS |
| GTAAGCCTGGGGAAAGGGTT+TGG | 0.441264 | 4.4:-50449225 | None:intergenic |
| GAAGGGATGGGCTTCGCCGA+AGG | 0.441341 | 4.4:-50447150 | None:intergenic |
| ATCAACAACAAGATGAAAAC+CGG | 0.442415 | 4.4:+50447529 | MS.gene88178:CDS |
| AACCGTTCGTCTTTGTGGCT+GGG | 0.443114 | 4.4:+50447324 | MS.gene88178:CDS |
| CACACAACTGGATATGGAAA+TGG | 0.444801 | 4.4:+50448810 | MS.gene88178:CDS |
| ACAACCTGAGTTCACACAAC+TGG | 0.444981 | 4.4:+50448798 | MS.gene88178:CDS |
| CATTGGAGGGATTGGTTGAG+GGG | 0.450706 | 4.4:-50447250 | None:intergenic |
| TTGTTAGCAGAATGTGCTAC+TGG | 0.459113 | 4.4:-50447439 | None:intergenic |
| GATGAGTTCTTGAAATCCAT+TGG | 0.459856 | 4.4:-50447267 | None:intergenic |
| CCTAACAACAACACCTTGAA+TGG | 0.460702 | 4.4:-50447488 | None:intergenic |
| TTGTTAAGGCGATGCTCTGC+GGG | 0.461752 | 4.4:+50449924 | MS.gene88178:CDS |
| AGCAATGAATATATATGGTT+CGG | 0.467165 | 4.4:+50449257 | MS.gene88178:CDS |
| AAGCAAATGCTAATGGTAGC+TGG | 0.467850 | 4.4:+50448519 | MS.gene88178:CDS |
| TCGTGCATTGGCTTATGGCA+TGG | 0.470656 | 4.4:+50450356 | MS.gene88178:CDS |
| CATCGAGGTTGCTGCAAATG+AGG | 0.476333 | 4.4:+50447555 | MS.gene88178:CDS |
| CGTTATCTTTGATGACCCTT+CGG | 0.476345 | 4.4:+50447134 | MS.gene88178:CDS |
| TTGAAAGATCTCTCAGCTGT+TGG | 0.477814 | 4.4:-50451230 | None:intergenic |
| CATATGTAAGCCTGGGGAAA+GGG | 0.478597 | 4.4:-50449230 | None:intergenic |
| AGGTCATCTTAGAGTTTATG+TGG | 0.489822 | 4.4:+50450004 | MS.gene88178:CDS |
| TGCAAAAGATTCTCCTAAAG+AGG | 0.494494 | 4.4:+50447642 | MS.gene88178:CDS |
| GCATACAAATCTGGTGCAAA+GGG | 0.495628 | 4.4:+50449792 | MS.gene88178:CDS |
| TGAGACCATAGGCATCTCAA+TGG | 0.496619 | 4.4:+50450590 | MS.gene88178:CDS |
| AGCATTTGCTTAAATATCTG+AGG | 0.502288 | 4.4:-50448507 | None:intergenic |
| CTAAAGAGGAAATCCATTTG+AGG | 0.503024 | 4.4:+50447656 | MS.gene88178:CDS |
| AGAGACAAAATATCCTCTAA+AGG | 0.503211 | 4.4:-50448841 | None:intergenic |
| GAGTATGTGGTTACCATTCA+AGG | 0.504278 | 4.4:+50447475 | MS.gene88178:CDS |
| TTCTTGAAGCTCTTGACATG+GGG | 0.505034 | 4.4:+50450835 | MS.gene88178:CDS |
| TCTGATTCCTTGGAGTGTGG+TGG | 0.511716 | 4.4:+50449699 | MS.gene88178:CDS |
| CTGCTCCATTGAGATGCCTA+TGG | 0.511813 | 4.4:-50450595 | None:intergenic |
| AAACAGTGCTATGATATAAG+TGG | 0.512342 | 4.4:+50449756 | MS.gene88178:CDS |
| GATCCACATCAGAAGGTGCC+CGG | 0.513418 | 4.4:+50448274 | MS.gene88178:CDS |
| TCCGGATTTGGTGCAGTGAA+AGG | 0.517009 | 4.4:-50450309 | None:intergenic |
| TTCTCTGATTCCTTGGAGTG+TGG | 0.517839 | 4.4:+50449696 | MS.gene88178:CDS |
| TGCAGCAACCTCGATGAAGC+CGG | 0.521630 | 4.4:-50447548 | None:intergenic |
| TAATGAAGAGTTGATCAGAA+AGG | 0.523027 | 4.4:+50448864 | MS.gene88178:CDS |
| AAGGGATGGGCTTCGCCGAA+GGG | 0.526014 | 4.4:-50447149 | None:intergenic |
| GCATCTGTAAATAAAACTCT+AGG | 0.526215 | 4.4:+50449984 | MS.gene88178:CDS |
| GTAACATGTTGCTGCGGCTG+CGG | 0.531703 | 4.4:+50448058 | MS.gene88178:CDS |
| GCATATGTAAGCCTGGGGAA+AGG | 0.533395 | 4.4:-50449231 | None:intergenic |
| GCTTCAGCATATGTAAGCCT+GGG | 0.534696 | 4.4:-50449237 | None:intergenic |
| GTTCTCAAGATCAAGAAGAA+TGG | 0.536340 | 4.4:+50449822 | MS.gene88178:CDS |
| CAACTACAGAGGAATTGTTA+AGG | 0.538249 | 4.4:+50449910 | MS.gene88178:CDS |
| CATAGGCATCTCAATGGAGC+AGG | 0.539394 | 4.4:+50450596 | MS.gene88178:CDS |
| CTTCTTGAAGCTCTTGACAT+GGG | 0.540430 | 4.4:+50450834 | MS.gene88178:CDS |
| AGCATACAAATCTGGTGCAA+AGG | 0.544302 | 4.4:+50449791 | MS.gene88178:CDS |
| TGAAATAAAATCAGATCACT+TGG | 0.547969 | 4.4:-50449948 | None:intergenic |
| AATTACCAAACCCTTTCCCC+AGG | 0.550475 | 4.4:+50449220 | MS.gene88178:CDS |
| CTCGAGATCGCCTTCCGAGG+TGG | 0.558015 | 4.4:+50451203 | MS.gene88178:CDS |
| ATAAATATTATCAAGTAGCA+AGG | 0.559397 | 4.4:+50448547 | MS.gene88178:CDS |
| CCCTCAACCAATCCCTCCAA+TGG | 0.560094 | 4.4:+50447251 | MS.gene88178:CDS |
| TTGATGGAACTAAATAATCC+CGG | 0.562396 | 4.4:-50448293 | None:intergenic |
| TTGTTGTTGATTGATGGAGT+TGG | 0.562931 | 4.4:-50447517 | None:intergenic |
| TAACCTAAGACGCGAGTATG+TGG | 0.563000 | 4.4:+50447462 | MS.gene88178:CDS |
| GTGGTCTCTAAGAATGAGAA+AGG | 0.563632 | 4.4:-50447377 | None:intergenic |
| GCATTTGCTTAAATATCTGA+GGG | 0.563732 | 4.4:-50448506 | None:intergenic |
| AGTTCTTGAAATCCATTGGA+GGG | 0.564212 | 4.4:-50447263 | None:intergenic |
| GATGTGGATCTTGACAGTAT+TGG | 0.564387 | 4.4:-50448261 | None:intergenic |
| ATCCACATCAGAAGGTGCCC+GGG | 0.565248 | 4.4:+50448275 | MS.gene88178:CDS |
| CCGACTTTCCAATGTTTGAG+TGG | 0.567755 | 4.4:+50450170 | MS.gene88178:CDS |
| CCAATGCACGAGCCGATGCA+AGG | 0.567886 | 4.4:-50450344 | None:intergenic |
| CCACTCAAACATTGGAAAGT+CGG | 0.571037 | 4.4:-50450170 | None:intergenic |
| TATCTGAGGGCTTTGTGGCA+AGG | 0.571416 | 4.4:-50448493 | None:intergenic |
| ATATCCAGTTGTGTGAACTC+AGG | 0.571872 | 4.4:-50448802 | None:intergenic |
| GCTTATGGCATGGTTTACAA+TGG | 0.574213 | 4.4:+50450366 | MS.gene88178:CDS |
| ATCCCGGGCACCTTCTGATG+TGG | 0.574888 | 4.4:-50448277 | None:intergenic |
| AGTGGAATGATTCGAAGAAG+AGG | 0.575204 | 4.4:+50450188 | MS.gene88178:CDS |
| AGATTGGTTATGTTGCTAGC+TGG | 0.578621 | 4.4:+50451120 | MS.gene88178:CDS |
| GAAAGATCTCTCAGCTGTTG+GGG | 0.578786 | 4.4:-50451228 | None:intergenic |
| CCTCGGAAGGCGATCTCGAG+AGG | 0.580748 | 4.4:-50451200 | None:intergenic |
| TGGCATGGTTTACAATGGAG+TGG | 0.581949 | 4.4:+50450371 | MS.gene88178:CDS |
| TGTTGGGGATCCACCTCGGA+AGG | 0.583158 | 4.4:-50451213 | None:intergenic |
| GAGTTCTTGAAATCCATTGG+AGG | 0.587933 | 4.4:-50447264 | None:intergenic |
| TTTAGTTCCATCAAGAACCC+AGG | 0.589837 | 4.4:+50448302 | MS.gene88178:CDS |
| CTGTCAAGATCCACATCAGA+AGG | 0.589893 | 4.4:+50448267 | MS.gene88178:CDS |
| AATAACTCCACCACACTCCA+AGG | 0.590280 | 4.4:-50449706 | None:intergenic |
| TCTTCTTGAAGCTCTTGACA+TGG | 0.595100 | 4.4:+50450833 | MS.gene88178:CDS |
| CAGCTGTTGGGGATCCACCT+CGG | 0.598561 | 4.4:-50451217 | None:intergenic |
| GCTGCGGCTGCGGCATAATG+TGG | 0.600130 | 4.4:+50448068 | MS.gene88178:CDS |
| TGTCGTAACCTGAATAATGC+CGG | 0.605121 | 4.4:-50447401 | None:intergenic |
| CTCGGAAGGCGATCTCGAGA+GGG | 0.608875 | 4.4:-50451199 | None:intergenic |
| GTTGCACTTCACAGACGCCA+CGG | 0.612326 | 4.4:+50447346 | MS.gene88178:CDS |
| TGATGGAACTAAATAATCCC+GGG | 0.612782 | 4.4:-50448292 | None:intergenic |
| GATCAAATCTGGTATCTGGA+TGG | 0.616984 | 4.4:-50449281 | None:intergenic |
| TCTTGAAGCTCTTGACATGG+GGG | 0.620703 | 4.4:+50450836 | MS.gene88178:CDS |
| ATCGATGTCTTGATCTAAGG+AGG | 0.622065 | 4.4:+50448022 | MS.gene88178:CDS |
| AGCTGGTGTTAATTCAATCA+GGG | 0.624535 | 4.4:+50451137 | MS.gene88178:CDS |
| CCTCTCGAGATCGCCTTCCG+AGG | 0.627614 | 4.4:+50451200 | MS.gene88178:CDS |
| AGACATGAACAACCTTGCAT+CGG | 0.637751 | 4.4:+50450332 | MS.gene88178:CDS |
| CTCATTCTTAGAGACCACAC+CGG | 0.643505 | 4.4:+50447382 | MS.gene88178:CDS |
| ATTGTTAAGGCGATGCTCTG+CGG | 0.643730 | 4.4:+50449923 | MS.gene88178:CDS |
| TTAGAAGACTTACCATGTGG+CGG | 0.647061 | 4.4:-50450861 | None:intergenic |
| TGATTCGAAGAAGAGGCTTG+AGG | 0.659065 | 4.4:+50450195 | MS.gene88178:CDS |
| TATGGATCCTGCAACTACAG+AGG | 0.660875 | 4.4:+50449899 | MS.gene88178:CDS |
| AACCCAGCCACAAAGACGAA+CGG | 0.665129 | 4.4:-50447326 | None:intergenic |
| TAACCTGAATAATGCCGGTG+TGG | 0.674910 | 4.4:-50447396 | None:intergenic |
| CTTCAGCATATGTAAGCCTG+GGG | 0.689625 | 4.4:-50449236 | None:intergenic |
| AGATATCTAGAAGACATACA+TGG | 0.691076 | 4.4:+50448105 | MS.gene88178:CDS |
| ATTTCAAGAACTCATCATTG+CGG | 0.692697 | 4.4:+50447274 | MS.gene88178:CDS |
| CATGGTTTACAATGGAGTGG+AGG | 0.725491 | 4.4:+50450374 | MS.gene88178:CDS |
| TGAATTGTAACATGTTGCTG+CGG | 0.726330 | 4.4:+50448052 | MS.gene88178:CDS |
| GATGAAAACCGGCTTCATCG+AGG | 0.731147 | 4.4:+50447540 | MS.gene88178:CDS |
| GCACTTCACAGACGCCACGG+TGG | 0.770713 | 4.4:+50447349 | MS.gene88178:CDS |
| TGAGAAAGGTGACTCCACCG+TGG | 0.779938 | 4.4:-50447363 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAAATGAAATTTAGAA+TGG | + | chr4.4:50448948-50448967 | MS.gene88178:intron | 10.0% |
| !!! | TTTATTAAGAATTACATTTT+TGG | - | chr4.4:50450243-50450262 | None:intergenic | 10.0% |
| !! | AACATAAGTGAAATAAATAA+TGG | - | chr4.4:50450102-50450121 | None:intergenic | 15.0% |
| !! | TAATACTAAAATCAATCATT+TGG | - | chr4.4:50447829-50447848 | None:intergenic | 15.0% |
| !! | TTCTTAATAAATAAGTTATC+TGG | + | chr4.4:50450252-50450271 | MS.gene88178:intron | 15.0% |
| !!! | CAATCTTTTTAATGTAATTT+TGG | - | chr4.4:50448730-50448749 | None:intergenic | 15.0% |
| !!! | GTTATATTTGTTTGAATTTT+AGG | + | chr4.4:50450123-50450142 | MS.gene88178:intron | 15.0% |
| !!! | TATTATATTTTATGTCAGAT+TGG | + | chr4.4:50450519-50450538 | MS.gene88178:intron | 15.0% |
| !! | AAAACGAATATGATTATAGA+TGG | - | chr4.4:50448900-50448919 | None:intergenic | 20.0% |
| !! | ATAAATATTATCAAGTAGCA+AGG | + | chr4.4:50448547-50448566 | MS.gene88178:CDS | 20.0% |
| !! | ATAATTCAGTTTATCAACAA+GGG | - | chr4.4:50450909-50450928 | None:intergenic | 20.0% |
| !! | CTTCAATAAATAAAGAAAAC+TGG | - | chr4.4:50450986-50451005 | None:intergenic | 20.0% |
| !! | TCTTGTCAATAATTTACAAT+TGG | - | chr4.4:50447961-50447980 | None:intergenic | 20.0% |
| !! | TGAAAAACATAAATAAGACT+AGG | - | chr4.4:50450642-50450661 | None:intergenic | 20.0% |
| !! | TGTTATTATCTATCAAATAC+AGG | + | chr4.4:50451075-50451094 | MS.gene88178:intron | 20.0% |
| !!! | ATTTGAGTTTATTTGTATCT+TGG | + | chr4.4:50448598-50448617 | MS.gene88178:intron | 20.0% |
| !!! | TGCTTACAATTACAAATTTT+AGG | + | chr4.4:50447998-50448017 | MS.gene88178:intron | 20.0% |
| !!! | TTAAATGAAATTTAGAATGG+AGG | + | chr4.4:50448951-50448970 | MS.gene88178:intron | 20.0% |
| !!! | TTACATTTTTTATTTTGTGC+AGG | + | chr4.4:50450275-50450294 | MS.gene88178:intron | 20.0% |
| !!! | TTCAAAACTTTAGGAAAAAA+TGG | - | chr4.4:50447613-50447632 | None:intergenic | 20.0% |
| !!! | TTTTAATTCTAGATCAAATC+TGG | - | chr4.4:50449295-50449314 | None:intergenic | 20.0% |
| ! | AAATCGAATCATGTGTATTA+TGG | + | chr4.4:50449144-50449163 | MS.gene88178:intron | 25.0% |
| ! | AACATAAATAAGACTAGGAA+TGG | - | chr4.4:50450637-50450656 | None:intergenic | 25.0% |
| ! | AGCAATGAATATATATGGTT+CGG | + | chr4.4:50449257-50449276 | MS.gene88178:CDS | 25.0% |
| ! | ATTCTGTATTCTTGGTTTAT+GGG | - | chr4.4:50448688-50448707 | None:intergenic | 25.0% |
| ! | CTATACCTTATGAACAAAAA+AGG | - | chr4.4:50448232-50448251 | None:intergenic | 25.0% |
| ! | CTGAAAAAATCTAAATACCT+GGG | - | chr4.4:50448322-50448341 | None:intergenic | 25.0% |
| ! | GATAATTCAGTTTATCAACA+AGG | - | chr4.4:50450910-50450929 | None:intergenic | 25.0% |
| ! | GATATGCTTCAAATTATATG+AGG | - | chr4.4:50449387-50449406 | None:intergenic | 25.0% |
| ! | GATATTTAAGCAAATGCTAA+TGG | + | chr4.4:50448512-50448531 | MS.gene88178:CDS | 25.0% |
| ! | GTTGCAGTTATCAATAAAAT+CGG | + | chr4.4:50451005-50451024 | MS.gene88178:intron | 25.0% |
| ! | TATTATCTATCAAATACAGG+AGG | + | chr4.4:50451078-50451097 | MS.gene88178:intron | 25.0% |
| ! | TCATCAGAATTCAAAACTTT+AGG | - | chr4.4:50447622-50447641 | None:intergenic | 25.0% |
| ! | TGAAATAAAATCAGATCACT+TGG | - | chr4.4:50449951-50449970 | None:intergenic | 25.0% |
| ! | TGTCAATAATTTACAATTGG+AGG | - | chr4.4:50447958-50447977 | None:intergenic | 25.0% |
| ! | TGTTTGATATATATCTTCTG+TGG | + | chr4.4:50449093-50449112 | MS.gene88178:intron | 25.0% |
| ! | TTTAGTATTAGTTCCTTGTT+TGG | + | chr4.4:50447839-50447858 | MS.gene88178:intron | 25.0% |
| ! | TTTCCAATACTTCAAATTTG+TGG | - | chr4.4:50448925-50448944 | None:intergenic | 25.0% |
| !! | AAGATATGATGAACTTCTTT+TGG | + | chr4.4:50448985-50449004 | MS.gene88178:intron | 25.0% |
| !! | ATATTTTATGTCAGATTGGT+GGG | + | chr4.4:50450523-50450542 | MS.gene88178:intron | 25.0% |
| !! | ATGCATTTTGTAGATGTTTT+CGG | + | chr4.4:50448752-50448771 | MS.gene88178:intron | 25.0% |
| !! | CATAATTTTACAACCAAACA+AGG | - | chr4.4:50447855-50447874 | None:intergenic | 25.0% |
| !! | CATTTAGAATCATGTAACAT+TGG | + | chr4.4:50450660-50450679 | MS.gene88178:intron | 25.0% |
| !! | TACACATGATTCGATTTTTA+TGG | - | chr4.4:50449141-50449160 | None:intergenic | 25.0% |
| !! | TATATTTTATGTCAGATTGG+TGG | + | chr4.4:50450522-50450541 | MS.gene88178:intron | 25.0% |
| !! | TATCCACAAATTTGAAGTAT+TGG | + | chr4.4:50448919-50448938 | MS.gene88178:intron | 25.0% |
| !! | TTTTATCAAGTTTAATGACG+TGG | + | chr4.4:50447878-50447897 | MS.gene88178:intron | 25.0% |
| !! | TTTTCTTGAAATTAAGAGTG+TGG | + | chr4.4:50449197-50449216 | MS.gene88178:CDS | 25.0% |
| !!! | AAAAAGTTTTAGTACCTTCA+AGG | + | chr4.4:50450740-50450759 | MS.gene88178:intron | 25.0% |
| !!! | ATTATGGCTAATTTTGAAGT+TGG | + | chr4.4:50449160-50449179 | MS.gene88178:intron | 25.0% |
| !!! | CTTTACCTTTTTTGTTCATA+AGG | + | chr4.4:50448224-50448243 | MS.gene88178:intron | 25.0% |
| !!! | TTTGAAAGTGATTGCTTTTT+TGG | - | chr4.4:50447221-50447240 | None:intergenic | 25.0% |
| AAAACAGATACCAACTTACA+TGG | - | chr4.4:50450052-50450071 | None:intergenic | 30.0% | |
| AAACAGTGCTATGATATAAG+TGG | + | chr4.4:50449756-50449775 | MS.gene88178:CDS | 30.0% | |
| AATCCACAAAATTGAATGTC+TGG | - | chr4.4:50450149-50450168 | None:intergenic | 30.0% | |
| AATTCAAATGATGAACCTAC+TGG | - | chr4.4:50448148-50448167 | None:intergenic | 30.0% | |
| AATTCCCTATCAATACATCA+AGG | + | chr4.4:50449854-50449873 | MS.gene88178:intron | 30.0% | |
| ACTATTAAAGATTGAGAAGC+AGG | + | chr4.4:50449029-50449048 | MS.gene88178:intron | 30.0% | |
| AGAGACAAAATATCCTCTAA+AGG | - | chr4.4:50448844-50448863 | None:intergenic | 30.0% | |
| AGATATCTAGAAGACATACA+TGG | + | chr4.4:50448105-50448124 | MS.gene88178:CDS | 30.0% | |
| AGCATTTGCTTAAATATCTG+AGG | - | chr4.4:50448510-50448529 | None:intergenic | 30.0% | |
| ATATATATCTTCTGTGGACA+TGG | + | chr4.4:50449099-50449118 | MS.gene88178:intron | 30.0% | |
| ATCAACAACAAGATGAAAAC+CGG | + | chr4.4:50447529-50447548 | MS.gene88178:CDS | 30.0% | |
| ATTCCCTATCAATACATCAA+GGG | + | chr4.4:50449855-50449874 | MS.gene88178:intron | 30.0% | |
| ATTTCAAGAACTCATCATTG+CGG | + | chr4.4:50447274-50447293 | MS.gene88178:CDS | 30.0% | |
| CACAAACAATGATTTAACAC+AGG | - | chr4.4:50449471-50449490 | None:intergenic | 30.0% | |
| CATTCTGTATTCTTGGTTTA+TGG | - | chr4.4:50448689-50448708 | None:intergenic | 30.0% | |
| CTCTCATTTGATATAGCTTA+TGG | + | chr4.4:50449441-50449460 | MS.gene88178:intron | 30.0% | |
| GAATTATCTTCCAACGATAT+CGG | + | chr4.4:50447298-50447317 | MS.gene88178:CDS | 30.0% | |
| GCATCTGTAAATAAAACTCT+AGG | + | chr4.4:50449984-50450003 | MS.gene88178:CDS | 30.0% | |
| GCATTTGCTTAAATATCTGA+GGG | - | chr4.4:50448509-50448528 | None:intergenic | 30.0% | |
| GCTGAAAAAATCTAAATACC+TGG | - | chr4.4:50448323-50448342 | None:intergenic | 30.0% | |
| GCTGAAGCAATGAATATATA+TGG | + | chr4.4:50449252-50449271 | MS.gene88178:CDS | 30.0% | |
| GGAATCAGAGAAAATCTTAA+AGG | - | chr4.4:50449688-50449707 | None:intergenic | 30.0% | |
| GTTTATGTGGCACATAAATT+AGG | + | chr4.4:50450017-50450036 | MS.gene88178:CDS | 30.0% | |
| TACAATGAAGCATACAAATC+TGG | + | chr4.4:50449783-50449802 | MS.gene88178:CDS | 30.0% | |
| TCATCAAAGATAACGCTTTA+AGG | - | chr4.4:50447129-50447148 | None:intergenic | 30.0% | |
| TCCATACTTGATACTAAATC+AGG | - | chr4.4:50449885-50449904 | None:intergenic | 30.0% | |
| TCCTGATTTAGTATCAAGTA+TGG | + | chr4.4:50449881-50449900 | MS.gene88178:intron | 30.0% | |
| TTGATGGAACTAAATAATCC+CGG | - | chr4.4:50448296-50448315 | None:intergenic | 30.0% | |
| TTGTATCTTGGCTTATGTTA+TGG | + | chr4.4:50448610-50448629 | MS.gene88178:intron | 30.0% | |
| ! | AAAAGAGGAGAGTTTTTGTA+TGG | - | chr4.4:50448664-50448683 | None:intergenic | 30.0% |
| ! | AAAGAGGAGAGTTTTTGTAT+GGG | - | chr4.4:50448663-50448682 | None:intergenic | 30.0% |
| ! | AAATCCCTTGATGTATTGAT+AGG | - | chr4.4:50449862-50449881 | None:intergenic | 30.0% |
| ! | AAATTTAGAATGGAGGAGTA+AGG | + | chr4.4:50448958-50448977 | MS.gene88178:intron | 30.0% |
| ! | AATCCCTTGATGTATTGATA+GGG | - | chr4.4:50449861-50449880 | None:intergenic | 30.0% |
| ! | ACATGGTAAGTCTTCTAAAA+TGG | + | chr4.4:50450866-50450885 | MS.gene88178:intron | 30.0% |
| ! | AGAGTTTTTGTATGGGAAAA+AGG | - | chr4.4:50448656-50448675 | None:intergenic | 30.0% |
| ! | AGTTTTTGTATGGGAAAAAG+GGG | - | chr4.4:50448654-50448673 | None:intergenic | 30.0% |
| ! | GAGTTTTTGTATGGGAAAAA+GGG | - | chr4.4:50448655-50448674 | None:intergenic | 30.0% |
| ! | GCTGAGATATAACTTTTCAT+TGG | + | chr4.4:50449631-50449650 | MS.gene88178:intron | 30.0% |
| ! | TAAGATTTTCTCTGATTCCT+TGG | + | chr4.4:50449689-50449708 | MS.gene88178:CDS | 30.0% |
| ! | TAATGAAGAGTTGATCAGAA+AGG | + | chr4.4:50448864-50448883 | MS.gene88178:CDS | 30.0% |
| ! | TATTTTATGTCAGATTGGTG+GGG | + | chr4.4:50450524-50450543 | MS.gene88178:intron | 30.0% |
| ! | TCCATCAAAATTTCTTTTGC+AGG | + | chr4.4:50450791-50450810 | MS.gene88178:intron | 30.0% |
| ! | TGCATTTTGTAGATGTTTTC+GGG | + | chr4.4:50448753-50448772 | MS.gene88178:intron | 30.0% |
| ! | TTTGTAAGTGAGTGGTATTT+TGG | - | chr4.4:50447182-50447201 | None:intergenic | 30.0% |
| !! | ATTTTAGAAGACTTACCATG+TGG | - | chr4.4:50450867-50450886 | None:intergenic | 30.0% |
| !! | GATCTGATTTTATTTCAAGC+TGG | + | chr4.4:50449954-50449973 | MS.gene88178:CDS | 30.0% |
| !! | TTCAAACCACAAAAGTACTA+TGG | - | chr4.4:50449343-50449362 | None:intergenic | 30.0% |
| !! | TTCATCTTGTTGTTGATTGA+TGG | - | chr4.4:50447526-50447545 | None:intergenic | 30.0% |
| !!! | AGTGATTGCTTTTTTGGTTT+TGG | - | chr4.4:50447215-50447234 | None:intergenic | 30.0% |
| !!! | GTGATTGCTTTTTTGGTTTT+GGG | - | chr4.4:50447214-50447233 | None:intergenic | 30.0% |
| !!! | TGTTTGTTTTTGTGTAAACC+AGG | + | chr4.4:50449503-50449522 | MS.gene88178:intron | 30.0% |
| !!! | TTGAAGTTGGTTTTTATTGC+AGG | + | chr4.4:50449173-50449192 | MS.gene88178:intron | 30.0% |
| AAAAAGGTAAAGATCGACAC+AGG | - | chr4.4:50448216-50448235 | None:intergenic | 35.0% | |
| AAGCAAGCATTCTGTATTCT+TGG | - | chr4.4:50448696-50448715 | None:intergenic | 35.0% | |
| ACTAAGGCTATTACCTCAAA+TGG | - | chr4.4:50447672-50447691 | None:intergenic | 35.0% | |
| AGATCTTTCAATCACTGCAT+AGG | + | chr4.4:50451242-50451261 | MS.gene88178:CDS | 35.0% | |
| AGGTCATCTTAGAGTTTATG+TGG | + | chr4.4:50450004-50450023 | MS.gene88178:CDS | 35.0% | |
| AGGTTCAAGAGTTGAATTCT+AGG | + | chr4.4:50447575-50447594 | MS.gene88178:CDS | 35.0% | |
| AGTTCTTGAAATCCATTGGA+GGG | - | chr4.4:50447266-50447285 | None:intergenic | 35.0% | |
| ATTCAGTTTATCAACAAGGG+AGG | - | chr4.4:50450906-50450925 | None:intergenic | 35.0% | |
| CAACTACAGAGGAATTGTTA+AGG | + | chr4.4:50449910-50449929 | MS.gene88178:CDS | 35.0% | |
| CTAAAGAGGAAATCCATTTG+AGG | + | chr4.4:50447656-50447675 | MS.gene88178:CDS | 35.0% | |
| GAATCATTCCACTCAAACAT+TGG | - | chr4.4:50450181-50450200 | None:intergenic | 35.0% | |
| GAGAGACGTGAAATTATATG+AGG | - | chr4.4:50449424-50449443 | None:intergenic | 35.0% | |
| GATGAGTTCTTGAAATCCAT+TGG | - | chr4.4:50447270-50447289 | None:intergenic | 35.0% | |
| GCAAATCTAGGTAAACTCTT+AGG | - | chr4.4:50449603-50449622 | None:intergenic | 35.0% | |
| GTACTTTGGTTGTTGGTATT+TGG | + | chr4.4:50448187-50448206 | MS.gene88178:intron | 35.0% | |
| GTATCAGTCGCAAAATTGTA+AGG | - | chr4.4:50450493-50450512 | None:intergenic | 35.0% | |
| GTTCTCAAGATCAAGAAGAA+TGG | + | chr4.4:50449822-50449841 | MS.gene88178:CDS | 35.0% | |
| TAAACGCGACATACAACAAA+AGG | + | chr4.4:50450563-50450582 | MS.gene88178:CDS | 35.0% | |
| TCTAGATCAAATCTGGTATC+TGG | - | chr4.4:50449288-50449307 | None:intergenic | 35.0% | |
| TCTTGGTTTATGGGAAAAAG+AGG | - | chr4.4:50448679-50448698 | None:intergenic | 35.0% | |
| TGAATTGTAACATGTTGCTG+CGG | + | chr4.4:50448052-50448071 | MS.gene88178:CDS | 35.0% | |
| TGATGGAACTAAATAATCCC+GGG | - | chr4.4:50448295-50448314 | None:intergenic | 35.0% | |
| TGCAAAAGATTCTCCTAAAG+AGG | + | chr4.4:50447642-50447661 | MS.gene88178:CDS | 35.0% | |
| TGCTGAAACATGTTTGATTG+CGG | + | chr4.4:50447911-50447930 | MS.gene88178:intron | 35.0% | |
| TTAAATATCTGAGGGCTTTG+TGG | - | chr4.4:50448501-50448520 | None:intergenic | 35.0% | |
| TTTATCAACAAGGGAGGAAT+GGG | - | chr4.4:50450900-50450919 | None:intergenic | 35.0% | |
| ! | AATGGCTTTTACTCCTTTAG+AGG | + | chr4.4:50448828-50448847 | MS.gene88178:CDS | 35.0% |
| ! | AGCTGGTGTTAATTCAATCA+GGG | + | chr4.4:50451137-50451156 | MS.gene88178:CDS | 35.0% |
| ! | AGGTATCTGACATTTTCTCA+AGG | + | chr4.4:50449658-50449677 | MS.gene88178:intron | 35.0% |
| ! | ATTTTATGTCAGATTGGTGG+GGG | + | chr4.4:50450525-50450544 | MS.gene88178:intron | 35.0% |
| ! | CATCTTCCATAGTACTTTTG+TGG | + | chr4.4:50449334-50449353 | MS.gene88178:intron | 35.0% |
| ! | CTCAAATGGATTTCCTCTTT+AGG | - | chr4.4:50447658-50447677 | None:intergenic | 35.0% |
| ! | GCCTGCAAAAGAAATTTTGA+TGG | - | chr4.4:50450795-50450814 | None:intergenic | 35.0% |
| ! | TAGCTGGTGTTAATTCAATC+AGG | + | chr4.4:50451136-50451155 | MS.gene88178:CDS | 35.0% |
| ! | TGGTTTTTCATGTGGTATGA+AGG | + | chr4.4:50447713-50447732 | MS.gene88178:intron | 35.0% |
| ! | TTAGGCTTTTTGTAAGTGAG+TGG | - | chr4.4:50447190-50447209 | None:intergenic | 35.0% |
| ! | TTCTGTCATGGTTTTTCATG+TGG | + | chr4.4:50447705-50447724 | MS.gene88178:intron | 35.0% |
| ! | TTGTTGTTGATTGATGGAGT+TGG | - | chr4.4:50447520-50447539 | None:intergenic | 35.0% |
| !! | CTTTTGTGGTTTGAAGCATA+TGG | + | chr4.4:50449348-50449367 | MS.gene88178:intron | 35.0% |
| !! | TATAACTTTTCATTGGCTGC+AGG | + | chr4.4:50449638-50449657 | MS.gene88178:intron | 35.0% |
| !! | TTGTGCTCTATTCGTTTTTC+TGG | + | chr4.4:50450687-50450706 | MS.gene88178:intron | 35.0% |
| !!! | ACTGTGCAGTTGTTGTTTTT+GGG | - | chr4.4:50451176-50451195 | None:intergenic | 35.0% |
| !!! | AGTGAGTGGTATTTTGGTTT+TGG | - | chr4.4:50447176-50447195 | None:intergenic | 35.0% |
| !!! | CAAAAGGTTTTTGAGACCAT+AGG | + | chr4.4:50450579-50450598 | MS.gene88178:CDS | 35.0% |
| !!! | GCTTTTTTGGTTTTGGGTTT+AGG | - | chr4.4:50447208-50447227 | None:intergenic | 35.0% |
| !!! | GTGAGTGGTATTTTGGTTTT+GGG | - | chr4.4:50447175-50447194 | None:intergenic | 35.0% |
| !!! | TGGTATTTTGGTTTTGGGAA+GGG | - | chr4.4:50447170-50447189 | None:intergenic | 35.0% |
| AACAATTCCTCTGTAGTTGC+AGG | - | chr4.4:50449909-50449928 | None:intergenic | 40.0% | |
| AAGCAAATGCTAATGGTAGC+TGG | + | chr4.4:50448519-50448538 | MS.gene88178:CDS | 40.0% | |
| AGACATGAACAACCTTGCAT+CGG | + | chr4.4:50450332-50450351 | MS.gene88178:CDS | 40.0% | |
| AGCATACAAATCTGGTGCAA+AGG | + | chr4.4:50449791-50449810 | MS.gene88178:CDS | 40.0% | |
| AGGCATGTACTTGCTTTGTA+AGG | + | chr4.4:50447733-50447752 | MS.gene88178:intron | 40.0% | |
| AGTGGAATGATTCGAAGAAG+AGG | + | chr4.4:50450188-50450207 | MS.gene88178:CDS | 40.0% | |
| ATATCCAGTTGTGTGAACTC+AGG | - | chr4.4:50448805-50448824 | None:intergenic | 40.0% | |
| ATCGATGTCTTGATCTAAGG+AGG | + | chr4.4:50448022-50448041 | MS.gene88178:CDS | 40.0% | |
| CACACAACTGGATATGGAAA+TGG | + | chr4.4:50448810-50448829 | MS.gene88178:CDS | 40.0% | |
| CAGCAAGATGAAGCAAATCT+AGG | - | chr4.4:50449615-50449634 | None:intergenic | 40.0% | |
| CCACTCAAACATTGGAAAGT+CGG | - | chr4.4:50450173-50450192 | None:intergenic | 40.0% | |
| CCTAACAACAACACCTTGAA+TGG | - | chr4.4:50447491-50447510 | None:intergenic | 40.0% | |
| CTAAATACCTGGGTTCTTGA+TGG | - | chr4.4:50448312-50448331 | None:intergenic | 40.0% | |
| CTTCTTGAAGCTCTTGACAT+GGG | + | chr4.4:50450834-50450853 | MS.gene88178:CDS | 40.0% | |
| GAAAAACCATGACAGAATGC+TGG | - | chr4.4:50447702-50447721 | None:intergenic | 40.0% | |
| GAGTATGTGGTTACCATTCA+AGG | + | chr4.4:50447475-50447494 | MS.gene88178:CDS | 40.0% | |
| GAGTTCTTGAAATCCATTGG+AGG | - | chr4.4:50447267-50447286 | None:intergenic | 40.0% | |
| GATCAAATCTGGTATCTGGA+TGG | - | chr4.4:50449284-50449303 | None:intergenic | 40.0% | |
| GATGTGGATCTTGACAGTAT+TGG | - | chr4.4:50448264-50448283 | None:intergenic | 40.0% | |
| GCATACAAATCTGGTGCAAA+GGG | + | chr4.4:50449792-50449811 | MS.gene88178:CDS | 40.0% | |
| GCTTATGGCATGGTTTACAA+TGG | + | chr4.4:50450366-50450385 | MS.gene88178:CDS | 40.0% | |
| GTCACATGAATTATGAAGCG+AGG | + | chr4.4:50448459-50448478 | MS.gene88178:intron | 40.0% | |
| GTTTATCAACAAGGGAGGAA+TGG | - | chr4.4:50450901-50450920 | None:intergenic | 40.0% | |
| GTTTGATCGACCATGTAAGT+TGG | + | chr4.4:50450039-50450058 | MS.gene88178:intron | 40.0% | |
| TAAGGCTCGCAAGTACTTAA+AGG | - | chr4.4:50450475-50450494 | None:intergenic | 40.0% | |
| TCTTCTTGAAGCTCTTGACA+TGG | + | chr4.4:50450833-50450852 | MS.gene88178:CDS | 40.0% | |
| TGAAAGATCTCTCAGCTGTT+GGG | - | chr4.4:50451232-50451251 | None:intergenic | 40.0% | |
| TGAGTTCACACAACTGGATA+TGG | + | chr4.4:50448804-50448823 | MS.gene88178:CDS | 40.0% | |
| TGCACAACTATATCGAGGAA+AGG | + | chr4.4:50450952-50450971 | MS.gene88178:intron | 40.0% | |
| TGTCGTAACCTGAATAATGC+CGG | - | chr4.4:50447404-50447423 | None:intergenic | 40.0% | |
| TTAGAAGACTTACCATGTGG+CGG | - | chr4.4:50450864-50450883 | None:intergenic | 40.0% | |
| TTATCAACAAGGGAGGAATG+GGG | - | chr4.4:50450899-50450918 | None:intergenic | 40.0% | |
| TTCTTGAAGCTCTTGACATG+GGG | + | chr4.4:50450835-50450854 | MS.gene88178:CDS | 40.0% | |
| TTGAAAGATCTCTCAGCTGT+TGG | - | chr4.4:50451233-50451252 | None:intergenic | 40.0% | |
| TTGAAATCCATTGGAGGGAT+TGG | - | chr4.4:50447261-50447280 | None:intergenic | 40.0% | |
| TTGTTAGCAGAATGTGCTAC+TGG | - | chr4.4:50447442-50447461 | None:intergenic | 40.0% | |
| TTGTTCATGTCTTCCGGATT+TGG | - | chr4.4:50450324-50450343 | None:intergenic | 40.0% | |
| ! | AGATTGGTTATGTTGCTAGC+TGG | + | chr4.4:50451120-50451139 | MS.gene88178:CDS | 40.0% |
| ! | AGGCCAGACATTCAATTTTG+TGG | + | chr4.4:50450143-50450162 | MS.gene88178:intron | 40.0% |
| ! | AGTTGCTCTATGACTGCTTT+TGG | + | chr4.4:50447792-50447811 | MS.gene88178:intron | 40.0% |
| ! | CGTTATCTTTGATGACCCTT+CGG | + | chr4.4:50447134-50447153 | MS.gene88178:CDS | 40.0% |
| ! | GCTTTTCATCTTAGCAATGC+TGG | - | chr4.4:50448379-50448398 | None:intergenic | 40.0% |
| ! | GTGGTCTCTAAGAATGAGAA+AGG | - | chr4.4:50447380-50447399 | None:intergenic | 40.0% |
| ! | TAGCACTGTTTTGCATCAGA+AGG | - | chr4.4:50449747-50449766 | None:intergenic | 40.0% |
| ! | TTTAGTTCCATCAAGAACCC+AGG | + | chr4.4:50448302-50448321 | MS.gene88178:CDS | 40.0% |
| ! | TTTTATGTCAGATTGGTGGG+GGG | + | chr4.4:50450526-50450545 | MS.gene88178:intron | 40.0% |
| !! | CCATTCAAGGTGTTGTTGTT+AGG | + | chr4.4:50447488-50447507 | MS.gene88178:CDS | 40.0% |
| !! | GAATGCTGGTCTTAGAACTA+AGG | - | chr4.4:50447688-50447707 | None:intergenic | 40.0% |
| !! | GGTATCGATGTCTTGATCTA+AGG | + | chr4.4:50448019-50448038 | MS.gene88178:intron | 40.0% |
| !!! | AGACATACATGGTTTTGTCG+AGG | + | chr4.4:50448116-50448135 | MS.gene88178:CDS | 40.0% |
| !!! | ATTTTGGTTTTGGGAAGGGA+TGG | - | chr4.4:50447166-50447185 | None:intergenic | 40.0% |
| !!! | CACTGTGCAGTTGTTGTTTT+TGG | - | chr4.4:50451177-50451196 | None:intergenic | 40.0% |
| !!! | GTGGTATTTTGGTTTTGGGA+AGG | - | chr4.4:50447171-50447190 | None:intergenic | 40.0% |
| !!! | TTTTGGTTTTGGGAAGGGAT+GGG | - | chr4.4:50447165-50447184 | None:intergenic | 40.0% |
| AATAACTCCACCACACTCCA+AGG | - | chr4.4:50449709-50449728 | None:intergenic | 45.0% | |
| AATTACCAAACCCTTTCCCC+AGG | + | chr4.4:50449220-50449239 | MS.gene88178:CDS | 45.0% | |
| AATTCAGATCTGTCGAAGCC+AGG | - | chr4.4:50450770-50450789 | None:intergenic | 45.0% | |
| ACAACCTGAGTTCACACAAC+TGG | + | chr4.4:50448798-50448817 | MS.gene88178:CDS | 45.0% | |
| ATTGTTAAGGCGATGCTCTG+CGG | + | chr4.4:50449923-50449942 | MS.gene88178:CDS | 45.0% | |
| CATATGTAAGCCTGGGGAAA+GGG | - | chr4.4:50449233-50449252 | None:intergenic | 45.0% | |
| CATGGTTTACAATGGAGTGG+AGG | + | chr4.4:50450374-50450393 | MS.gene88178:CDS | 45.0% | |
| CCGACTTTCCAATGTTTGAG+TGG | + | chr4.4:50450170-50450189 | MS.gene88178:CDS | 45.0% | |
| CTAAGACCAGCATTCTGTCA+TGG | + | chr4.4:50447693-50447712 | MS.gene88178:intron | 45.0% | |
| CTCATTCTTAGAGACCACAC+CGG | + | chr4.4:50447382-50447401 | MS.gene88178:CDS | 45.0% | |
| CTGTCAAGATCCACATCAGA+AGG | + | chr4.4:50448267-50448286 | MS.gene88178:CDS | 45.0% | |
| CTTCAGCATATGTAAGCCTG+GGG | - | chr4.4:50449239-50449258 | None:intergenic | 45.0% | |
| GAAAGATCTCTCAGCTGTTG+GGG | - | chr4.4:50451231-50451250 | None:intergenic | 45.0% | |
| GCAAGGTTGTTCATGTCTTC+CGG | - | chr4.4:50450330-50450349 | None:intergenic | 45.0% | |
| GCACATCGTACTTTGGTTGT+TGG | + | chr4.4:50448180-50448199 | MS.gene88178:intron | 45.0% | |
| GCTTCAGCATATGTAAGCCT+GGG | - | chr4.4:50449240-50449259 | None:intergenic | 45.0% | |
| GTCTCTTGCACATCGTACTT+TGG | + | chr4.4:50448173-50448192 | MS.gene88178:intron | 45.0% | |
| GTCTGTGCACAACTATATCG+AGG | + | chr4.4:50450947-50450966 | MS.gene88178:intron | 45.0% | |
| TAACCACATACTCGCGTCTT+AGG | - | chr4.4:50447468-50447487 | None:intergenic | 45.0% | |
| TAACCTAAGACGCGAGTATG+TGG | + | chr4.4:50447462-50447481 | MS.gene88178:CDS | 45.0% | |
| TAACCTGAATAATGCCGGTG+TGG | - | chr4.4:50447399-50447418 | None:intergenic | 45.0% | |
| TATGGATCCTGCAACTACAG+AGG | + | chr4.4:50449899-50449918 | MS.gene88178:CDS | 45.0% | |
| TCCTTTCACTGCACCAAATC+CGG | + | chr4.4:50450308-50450327 | MS.gene88178:CDS | 45.0% | |
| TCTTGAAGCTCTTGACATGG+GGG | + | chr4.4:50450836-50450855 | MS.gene88178:CDS | 45.0% | |
| TGAGACCATAGGCATCTCAA+TGG | + | chr4.4:50450590-50450609 | MS.gene88178:CDS | 45.0% | |
| TGATTCGAAGAAGAGGCTTG+AGG | + | chr4.4:50450195-50450214 | MS.gene88178:CDS | 45.0% | |
| TGCTTCAGCATATGTAAGCC+TGG | - | chr4.4:50449241-50449260 | None:intergenic | 45.0% | |
| TGGCATGGTTTACAATGGAG+TGG | + | chr4.4:50450371-50450390 | MS.gene88178:CDS | 45.0% | |
| TTCTCTGATTCCTTGGAGTG+TGG | + | chr4.4:50449696-50449715 | MS.gene88178:CDS | 45.0% | |
| ! | AACGGTTTTGCCGATATCGT+TGG | - | chr4.4:50447311-50447330 | None:intergenic | 45.0% |
| ! | GAGCTTTGTGCGACACAAAT+GGG | + | chr4.4:50449565-50449584 | MS.gene88178:intron | 45.0% |
| ! | TTGTCGAGGTACTTTCCAGT+AGG | + | chr4.4:50448130-50448149 | MS.gene88178:intron | 45.0% |
| AAACCGTTCGTCTTTGTGGC+TGG | + | chr4.4:50447323-50447342 | MS.gene88178:CDS | 50.0% | |
| AACCCAGCCACAAAGACGAA+CGG | - | chr4.4:50447329-50447348 | None:intergenic | 50.0% | |
| AACCGTTCGTCTTTGTGGCT+GGG | + | chr4.4:50447324-50447343 | MS.gene88178:CDS | 50.0% | |
| AGACCACACCGGCATTATTC+AGG | + | chr4.4:50447393-50447412 | MS.gene88178:CDS | 50.0% | |
| CATAGGCATCTCAATGGAGC+AGG | + | chr4.4:50450596-50450615 | MS.gene88178:CDS | 50.0% | |
| CATCGAGGTTGCTGCAAATG+AGG | + | chr4.4:50447555-50447574 | MS.gene88178:CDS | 50.0% | |
| CCACACTCAAGCACGAGATA+TGG | - | chr4.4:50447762-50447781 | None:intergenic | 50.0% | |
| CCATATCTCGTGCTTGAGTG+TGG | + | chr4.4:50447759-50447778 | MS.gene88178:intron | 50.0% | |
| CTGCTCCATTGAGATGCCTA+TGG | - | chr4.4:50450598-50450617 | None:intergenic | 50.0% | |
| CTTTGTGCGACACAAATGGG+CGG | + | chr4.4:50449568-50449587 | MS.gene88178:intron | 50.0% | |
| GCATATGTAAGCCTGGGGAA+AGG | - | chr4.4:50449234-50449253 | None:intergenic | 50.0% | |
| GGCAAAACCGTTCGTCTTTG+TGG | + | chr4.4:50447319-50447338 | MS.gene88178:CDS | 50.0% | |
| TAGTACCTTCAAGGCATGCC+TGG | + | chr4.4:50450749-50450768 | MS.gene88178:intron | 50.0% | |
| TCTGATTCCTTGGAGTGTGG+TGG | + | chr4.4:50449699-50449718 | MS.gene88178:CDS | 50.0% | |
| TTGCAGGCTGAAGCGAAGTT+TGG | + | chr4.4:50450807-50450826 | MS.gene88178:intron | 50.0% | |
| TTGTGTCGCACAAAGCTCGA+GGG | - | chr4.4:50449563-50449582 | None:intergenic | 50.0% | |
| TTGTTAAGGCGATGCTCTGC+GGG | + | chr4.4:50449924-50449943 | MS.gene88178:CDS | 50.0% | |
| TTTGTGTCGCACAAAGCTCG+AGG | - | chr4.4:50449564-50449583 | None:intergenic | 50.0% | |
| ! | CGAGCTTTGTGCGACACAAA+TGG | + | chr4.4:50449564-50449583 | MS.gene88178:intron | 50.0% |
| ! | GATGAAAACCGGCTTCATCG+AGG | + | chr4.4:50447540-50447559 | MS.gene88178:CDS | 50.0% |
| ! | TATCTGAGGGCTTTGTGGCA+AGG | - | chr4.4:50448496-50448515 | None:intergenic | 50.0% |
| !! | AGGGATTGGTTGAGGGGTTT+AGG | - | chr4.4:50447247-50447266 | None:intergenic | 50.0% |
| !! | CATTGGAGGGATTGGTTGAG+GGG | - | chr4.4:50447253-50447272 | None:intergenic | 50.0% |
| !! | CCATTGGAGGGATTGGTTGA+GGG | - | chr4.4:50447254-50447273 | None:intergenic | 50.0% |
| !! | TCCATTGGAGGGATTGGTTG+AGG | - | chr4.4:50447255-50447274 | None:intergenic | 50.0% |
| !! | TCCGGATTTGGTGCAGTGAA+AGG | - | chr4.4:50450312-50450331 | None:intergenic | 50.0% |
| !! | TCGTGCATTGGCTTATGGCA+TGG | + | chr4.4:50450356-50450375 | MS.gene88178:CDS | 50.0% |
| CCATTGCACGAGCTGATGCA+AGG | - | chr4.4:50450436-50450455 | None:intergenic | 55.0% | |
| CCCTCAACCAATCCCTCCAA+TGG | + | chr4.4:50447251-50447270 | MS.gene88178:CDS | 55.0% | |
| CCTTGCATCAGCTCGTGCAA+TGG | + | chr4.4:50450433-50450452 | MS.gene88178:intron | 55.0% | |
| GTAACATGTTGCTGCGGCTG+CGG | + | chr4.4:50448058-50448077 | MS.gene88178:CDS | 55.0% | |
| GTAAGCCTGGGGAAAGGGTT+TGG | - | chr4.4:50449228-50449247 | None:intergenic | 55.0% | |
| GTTGCACTTCACAGACGCCA+CGG | + | chr4.4:50447346-50447365 | MS.gene88178:CDS | 55.0% | |
| TGAGAAAGGTGACTCCACCG+TGG | - | chr4.4:50447366-50447385 | None:intergenic | 55.0% | |
| TGCAGCAACCTCGATGAAGC+CGG | - | chr4.4:50447551-50447570 | None:intergenic | 55.0% | |
| !! | ATCCACATCAGAAGGTGCCC+GGG | + | chr4.4:50448275-50448294 | MS.gene88178:CDS | 55.0% |
| !! | GATCCACATCAGAAGGTGCC+CGG | + | chr4.4:50448274-50448293 | MS.gene88178:CDS | 55.0% |
| !! | TCGGCTCGTGCATTGGCTTA+TGG | + | chr4.4:50450351-50450370 | MS.gene88178:CDS | 55.0% |
| ATCCCGGGCACCTTCTGATG+TGG | - | chr4.4:50448280-50448299 | None:intergenic | 60.0% | |
| CAGCTGTTGGGGATCCACCT+CGG | - | chr4.4:50451220-50451239 | None:intergenic | 60.0% | |
| CCAATGCACGAGCCGATGCA+AGG | - | chr4.4:50450347-50450366 | None:intergenic | 60.0% | |
| CCTCCTCTGCGCACAACTTG+CGG | + | chr4.4:50449529-50449548 | MS.gene88178:intron | 60.0% | |
| CGAAGCCAGGCATGCCTTGA+AGG | - | chr4.4:50450757-50450776 | None:intergenic | 60.0% | |
| CTCGGAAGGCGATCTCGAGA+GGG | - | chr4.4:50451202-50451221 | None:intergenic | 60.0% | |
| TCTCCGCAAGTTGTGCGCAG+AGG | - | chr4.4:50449535-50449554 | None:intergenic | 60.0% | |
| TGTGCGCAGAGGAGGATACC+TGG | - | chr4.4:50449524-50449543 | None:intergenic | 60.0% | |
| TGTTGGGGATCCACCTCGGA+AGG | - | chr4.4:50451216-50451235 | None:intergenic | 60.0% | |
| ! | AAGGGATGGGCTTCGCCGAA+GGG | - | chr4.4:50447152-50447171 | None:intergenic | 60.0% |
| !! | CCTTGCATCGGCTCGTGCAT+TGG | + | chr4.4:50450344-50450363 | MS.gene88178:CDS | 60.0% |
| CCGCAAGTTGTGCGCAGAGG+AGG | - | chr4.4:50449532-50449551 | None:intergenic | 65.0% | |
| CCTCGGAAGGCGATCTCGAG+AGG | - | chr4.4:50451203-50451222 | None:intergenic | 65.0% | |
| CCTCTCGAGATCGCCTTCCG+AGG | + | chr4.4:50451200-50451219 | MS.gene88178:CDS | 65.0% | |
| CTCGAGATCGCCTTCCGAGG+TGG | + | chr4.4:50451203-50451222 | MS.gene88178:CDS | 65.0% | |
| GCACTTCACAGACGCCACGG+TGG | + | chr4.4:50447349-50447368 | MS.gene88178:CDS | 65.0% | |
| GCTGCGGCTGCGGCATAATG+TGG | + | chr4.4:50448068-50448087 | MS.gene88178:CDS | 65.0% | |
| ! | GAAGGGATGGGCTTCGCCGA+AGG | - | chr4.4:50447153-50447172 | None:intergenic | 65.0% |
| GACATGGGGGCTCCGCCACA+TGG | + | chr4.4:50450849-50450868 | MS.gene88178:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 50447112 | 50451263 | 50447112 | ID=MS.gene88178 |
| chr4.4 | mRNA | 50447112 | 50451263 | 50447112 | ID=MS.gene88178.t1;Parent=MS.gene88178 |
| chr4.4 | exon | 50447112 | 50447677 | 50447112 | ID=MS.gene88178.t1.exon1;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50447112 | 50447677 | 50447112 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| chr4.4 | exon | 50448020 | 50448137 | 50448020 | ID=MS.gene88178.t1.exon2;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50448020 | 50448137 | 50448020 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| chr4.4 | exon | 50448252 | 50448323 | 50448252 | ID=MS.gene88178.t1.exon3;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50448252 | 50448323 | 50448252 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| chr4.4 | exon | 50448477 | 50448568 | 50448477 | ID=MS.gene88178.t1.exon4;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50448477 | 50448568 | 50448477 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| chr4.4 | exon | 50448765 | 50448885 | 50448765 | ID=MS.gene88178.t1.exon5;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50448765 | 50448885 | 50448765 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| chr4.4 | exon | 50449195 | 50449317 | 50449195 | ID=MS.gene88178.t1.exon6;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50449195 | 50449317 | 50449195 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| chr4.4 | exon | 50449660 | 50449843 | 50449660 | ID=MS.gene88178.t1.exon7;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50449660 | 50449843 | 50449660 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| chr4.4 | exon | 50449892 | 50450052 | 50449892 | ID=MS.gene88178.t1.exon8;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50449892 | 50450052 | 50449892 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| chr4.4 | exon | 50450145 | 50450216 | 50450145 | ID=MS.gene88178.t1.exon9;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50450145 | 50450216 | 50450145 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| chr4.4 | exon | 50450297 | 50450395 | 50450297 | ID=MS.gene88178.t1.exon10;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50450297 | 50450395 | 50450297 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| chr4.4 | exon | 50450537 | 50450617 | 50450537 | ID=MS.gene88178.t1.exon11;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50450537 | 50450617 | 50450537 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| chr4.4 | exon | 50450813 | 50450870 | 50450813 | ID=MS.gene88178.t1.exon12;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50450813 | 50450870 | 50450813 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| chr4.4 | exon | 50451097 | 50451263 | 50451097 | ID=MS.gene88178.t1.exon13;Parent=MS.gene88178.t1 |
| chr4.4 | CDS | 50451097 | 50451263 | 50451097 | ID=cds.MS.gene88178.t1;Parent=MS.gene88178.t1 |
| Gene Sequence |
| Protein sequence |
