AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88234


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88234.t1 MTR_4g052970 97.396 384 10 0 1 384 1 384 0.0 763
MS.gene88234.t1 MTR_2g086530 64.599 387 129 2 1 381 1 385 0.0 511
MS.gene88234.t1 MTR_2g086530 66.120 366 116 2 22 381 1 364 3.29e-177 498
MS.gene88234.t1 MTR_1g077990 59.062 320 130 1 28 347 30 348 1.77e-140 406
MS.gene88234.t1 MTR_4g084480 51.613 341 163 1 10 350 15 353 1.28e-128 375
MS.gene88234.t1 MTR_4g084480 51.613 341 163 1 10 350 15 353 2.45e-128 375
MS.gene88234.t1 MTR_4g084480 51.613 341 163 1 10 350 8 346 2.51e-128 374
MS.gene88234.t1 MTR_2g019345 51.553 322 155 1 26 347 21 341 2.27e-122 359
MS.gene88234.t1 MTR_4g010200 43.681 364 196 3 9 366 8 368 9.79e-110 327
MS.gene88234.t1 MTR_4g114850 47.368 323 169 1 28 349 25 347 1.09e-108 324
MS.gene88234.t1 MTR_4g114850 47.368 323 169 1 28 349 25 347 1.27e-108 323
MS.gene88234.t1 MTR_4g114850 47.368 323 169 1 28 349 25 347 1.66e-108 323
MS.gene88234.t1 MTR_3g080410 46.866 335 166 5 25 350 22 353 1.58e-98 297
MS.gene88234.t1 MTR_4g069940 44.868 341 186 2 9 347 8 348 1.31e-97 298
MS.gene88234.t1 MTR_1g056640 47.059 323 166 4 28 347 37 357 2.90e-95 293
MS.gene88234.t1 MTR_1g007810 44.648 327 173 4 20 344 9 329 3.79e-95 289
MS.gene88234.t1 MTR_5g085580 46.483 327 168 4 25 347 21 344 1.23e-94 291
MS.gene88234.t1 MTR_1g022160 44.237 321 177 2 29 347 24 344 1.24e-94 289
MS.gene88234.t1 MTR_3g116510 43.529 340 189 3 10 347 9 347 2.36e-94 290
MS.gene88234.t1 MTR_1g022160 44.237 321 177 2 29 347 24 344 8.46e-94 289
MS.gene88234.t1 MTR_1g022160 44.237 321 177 2 29 347 24 344 1.07e-93 289
MS.gene88234.t1 MTR_1g022160 44.237 321 177 2 29 347 24 344 1.88e-93 288
MS.gene88234.t1 MTR_6g088885 43.425 327 177 3 30 352 28 350 2.13e-89 278
MS.gene88234.t1 MTR_7g053500 39.521 334 196 5 30 358 27 359 6.80e-86 268
MS.gene88234.t1 MTR_7g026340 42.236 322 178 6 28 347 22 337 1.93e-83 261
MS.gene88234.t1 MTR_8g102340 42.683 328 150 5 24 349 23 314 3.67e-80 254
MS.gene88234.t1 MTR_4g088155 37.572 346 205 6 11 349 8 349 2.01e-78 249
MS.gene88234.t1 MTR_8g012400 37.681 345 206 7 14 353 17 357 2.37e-78 249
MS.gene88234.t1 MTR_1g031900 38.261 345 204 5 10 349 7 347 9.93e-78 248
MS.gene88234.t1 MTR_1g031900 38.261 345 204 5 10 349 7 347 1.11e-77 248
MS.gene88234.t1 MTR_4g083500 42.188 320 180 5 30 347 45 361 1.98e-76 246
MS.gene88234.t1 MTR_8g085720 36.648 352 218 3 8 355 5 355 5.17e-75 241
MS.gene88234.t1 MTR_4g076490 37.870 338 194 6 15 349 81 405 5.13e-73 234
MS.gene88234.t1 MTR_3g065460 37.615 327 195 4 29 349 24 347 3.66e-72 233
MS.gene88234.t1 MTR_4g132280 37.462 331 202 3 23 349 39 368 1.26e-71 233
MS.gene88234.t1 MTR_4g076470 37.612 335 192 7 10 343 6 324 1.59e-71 227
MS.gene88234.t1 MTR_4g076440 37.870 338 196 8 9 345 2 326 1.95e-70 224
MS.gene88234.t1 MTR_1g052430 39.169 337 187 9 27 360 30 351 8.72e-70 225
MS.gene88234.t1 MTR_7g053500 39.286 280 164 5 84 358 4 282 3.81e-69 223
MS.gene88234.t1 MTR_4g076255 38.050 318 184 5 28 345 24 328 1.07e-68 219
MS.gene88234.t1 MTR_5g078200 35.057 348 216 5 9 349 2 346 2.64e-68 227
MS.gene88234.t1 MTR_3g083580 34.808 339 210 6 12 343 10 344 3.13e-68 223
MS.gene88234.t1 MTR_4g076570 39.062 320 187 5 28 346 21 333 9.21e-68 218
MS.gene88234.t1 MTR_4g076430 37.059 340 196 9 9 345 2 326 3.64e-67 216
MS.gene88234.t1 MTR_2g034470 37.764 331 194 8 22 349 23 344 6.94e-65 211
MS.gene88234.t1 MTR_5g078200 36.076 316 193 4 40 349 1 313 7.87e-65 217
MS.gene88234.t1 MTR_2g034440 37.578 322 189 8 22 340 15 327 2.61e-63 206
MS.gene88234.t1 MTR_2g034480 35.362 345 213 7 7 349 5 341 6.32e-63 206
MS.gene88234.t1 MTR_4g076500 36.599 347 198 8 3 339 46 380 8.10e-63 206
MS.gene88234.t1 MTR_7g081350 33.968 315 198 6 30 343 28 333 1.28e-62 204
MS.gene88234.t1 MTR_3g116510 46.009 213 115 0 135 347 1 213 3.15e-62 203
MS.gene88234.t1 MTR_2g034470 38.486 317 183 8 36 349 2 309 4.00e-62 202
MS.gene88234.t1 MTR_8g012400 38.182 275 164 5 84 353 4 277 1.40e-61 203
MS.gene88234.t1 MTR_7g081370 31.953 338 207 7 7 343 6 321 1.43e-55 186
MS.gene88234.t1 MTR_8g092070 32.927 328 205 10 30 349 35 355 5.03e-54 188
MS.gene88234.t1 MTR_1g010120 32.353 374 225 13 7 363 6 368 1.74e-51 179
MS.gene88234.t1 MTR_2g027560 33.739 329 203 10 28 347 27 349 1.67e-47 168
MS.gene88234.t1 MTR_5g081720 34.259 324 200 9 26 344 34 349 1.32e-46 163
MS.gene88234.t1 MTR_7g085390 30.899 356 224 13 28 371 25 370 2.85e-46 165
MS.gene88234.t1 MTR_4g124440 29.972 357 229 13 4 349 3 349 2.98e-46 165
MS.gene88234.t1 MTR_6g032820 32.011 353 214 13 5 343 4 344 7.57e-46 163
MS.gene88234.t1 MTR_3g108600 32.308 325 188 10 30 347 32 331 5.65e-44 159
MS.gene88234.t1 MTR_1g053320 30.571 350 222 11 10 349 16 354 5.79e-44 159
MS.gene88234.t1 MTR_4g112025 31.680 363 221 14 2 350 6 355 2.41e-43 158
MS.gene88234.t1 MTR_3g095050 30.882 340 210 15 28 353 33 361 2.58e-43 157
MS.gene88234.t1 MTR_3g031770 30.168 358 224 12 28 376 26 366 2.66e-38 144
MS.gene88234.t1 MTR_4g134280 34.799 273 152 11 116 369 3 268 4.96e-32 124
MS.gene88234.t1 MTR_6g078180 74.000 50 13 0 92 141 5 54 9.66e-20 82.8
MS.gene88234.t1 MTR_4g036775 38.235 102 56 4 245 345 80 175 7.02e-15 73.6
MS.gene88234.t1 MTR_4g036680 38.235 102 56 4 245 345 80 175 7.89e-15 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88234.t1 AT2G27500 61.433 363 134 2 23 379 23 385 4.33e-174 491
MS.gene88234.t1 AT2G27500 63.768 345 124 1 23 366 23 367 2.07e-173 488
MS.gene88234.t1 AT2G27500 59.935 307 117 2 79 379 1 307 2.14e-143 410
MS.gene88234.t1 AT1G32860 53.868 349 159 1 1 347 1 349 6.66e-139 402
MS.gene88234.t1 AT5G42100 53.704 324 147 2 28 348 26 349 1.03e-124 366
MS.gene88234.t1 AT5G42100 53.704 324 147 2 28 348 26 349 1.08e-124 366
MS.gene88234.t1 AT4G18340 48.711 349 174 3 3 347 5 352 3.71e-122 359
MS.gene88234.t1 AT4G18340 48.711 349 174 3 3 347 5 352 4.80e-122 358
MS.gene88234.t1 AT1G30080 48.368 337 174 0 10 346 17 353 7.17e-117 345
MS.gene88234.t1 AT1G30080 48.368 337 174 0 10 346 17 353 1.10e-116 345
MS.gene88234.t1 AT3G15800 47.550 347 178 3 28 370 42 388 5.59e-116 343
MS.gene88234.t1 AT2G26600 42.265 362 202 3 23 377 25 386 2.17e-109 326
MS.gene88234.t1 AT4G26830 46.154 338 178 3 10 345 6 341 8.85e-103 311
MS.gene88234.t1 AT4G26830 47.799 318 162 3 30 345 30 345 1.38e-102 311
MS.gene88234.t1 AT5G55180 44.510 337 178 4 15 349 19 348 6.00e-97 297
MS.gene88234.t1 AT5G55180 44.510 337 178 4 15 349 19 348 8.80e-97 296
MS.gene88234.t1 AT2G05790 46.894 322 164 4 28 345 24 342 7.44e-95 291
MS.gene88234.t1 AT4G34480 44.543 339 186 2 11 347 7 345 4.07e-94 286
MS.gene88234.t1 AT2G16230 45.231 325 176 2 25 347 20 344 6.57e-94 290
MS.gene88234.t1 AT4G34480 43.714 350 195 2 11 358 7 356 4.03e-92 286
MS.gene88234.t1 AT5G24318 43.168 322 177 3 28 347 29 346 1.32e-91 280
MS.gene88234.t1 AT2G26600 43.448 290 161 1 91 377 3 292 1.23e-90 275
MS.gene88234.t1 AT5G24318 43.168 322 177 3 28 347 29 346 3.49e-90 279
MS.gene88234.t1 AT5G42720 42.733 344 186 4 6 347 12 346 7.32e-90 278
MS.gene88234.t1 AT5G24318 43.168 322 177 3 28 347 29 346 7.50e-90 278
MS.gene88234.t1 AT5G56590 41.411 326 189 2 26 349 23 348 5.83e-87 272
MS.gene88234.t1 AT4G29360 42.690 342 193 3 10 349 7 347 1.29e-83 265
MS.gene88234.t1 AT4G29360 42.571 350 196 4 4 349 9 357 1.42e-83 265
MS.gene88234.t1 AT3G07320 38.133 375 216 8 22 381 14 387 8.69e-83 260
MS.gene88234.t1 AT2G01630 39.385 325 192 3 29 349 23 346 1.03e-78 248
MS.gene88234.t1 AT2G01630 39.385 325 192 3 29 349 23 346 3.03e-78 248
MS.gene88234.t1 AT2G01630 39.385 325 192 3 29 349 23 346 3.16e-77 247
MS.gene88234.t1 AT2G39640 39.706 340 195 5 10 347 9 340 1.06e-76 247
MS.gene88234.t1 AT4G16260 38.690 336 198 4 10 345 5 332 1.73e-76 240
MS.gene88234.t1 AT4G14080 38.226 327 197 4 30 352 43 368 1.62e-75 242
MS.gene88234.t1 AT3G23770 38.838 327 192 5 30 349 38 363 1.17e-73 237
MS.gene88234.t1 AT3G55430 38.953 344 190 11 28 360 28 362 5.58e-73 234
MS.gene88234.t1 AT4G16260 39.355 310 180 4 36 345 2 303 2.11e-72 229
MS.gene88234.t1 AT3G13560 35.913 323 202 3 25 343 22 343 1.29e-71 233
MS.gene88234.t1 AT3G13560 35.913 323 202 3 25 343 22 343 1.29e-71 233
MS.gene88234.t1 AT3G13560 35.913 323 202 3 25 343 22 343 1.29e-71 233
MS.gene88234.t1 AT3G13560 35.913 323 202 3 25 343 22 343 1.29e-71 233
MS.gene88234.t1 AT3G13560 35.913 323 202 3 25 343 22 343 1.29e-71 233
MS.gene88234.t1 AT1G11820 37.346 324 198 3 30 349 45 367 6.86e-71 227
MS.gene88234.t1 AT1G11820 37.346 324 198 3 30 349 45 367 1.08e-69 227
MS.gene88234.t1 AT1G11820 37.346 324 198 3 30 349 45 367 2.82e-69 226
MS.gene88234.t1 AT3G57270 36.842 323 192 7 26 345 24 337 9.15e-69 220
MS.gene88234.t1 AT4G34480 47.737 243 127 0 116 358 3 245 1.03e-67 219
MS.gene88234.t1 AT3G46570 38.081 344 200 9 10 348 10 345 2.04e-66 214
MS.gene88234.t1 AT1G66250 35.404 322 202 4 26 343 29 348 2.18e-65 216
MS.gene88234.t1 AT3G61810 34.365 323 196 5 30 345 56 369 1.57e-61 202
MS.gene88234.t1 AT5G24318 45.024 211 111 2 138 347 1 207 3.82e-58 192
MS.gene88234.t1 AT3G57260 32.938 337 212 7 10 345 13 336 5.17e-58 192
MS.gene88234.t1 AT3G57260 32.938 337 212 7 10 345 29 352 7.05e-58 192
MS.gene88234.t1 AT1G77790 35.423 319 195 7 30 345 31 341 5.48e-57 190
MS.gene88234.t1 AT1G77780 34.018 341 214 8 6 345 2 332 8.02e-57 190
MS.gene88234.t1 AT5G20340 36.137 321 193 9 28 345 42 353 9.06e-56 187
MS.gene88234.t1 AT3G57240 34.286 315 192 8 30 343 36 336 1.70e-54 183
MS.gene88234.t1 AT5G20390 33.631 336 211 7 13 345 17 343 4.64e-54 182
MS.gene88234.t1 AT5G20330 33.913 345 216 9 4 345 9 344 1.87e-52 178
MS.gene88234.t1 AT1G64760 32.948 346 213 12 13 349 11 346 1.29e-49 174
MS.gene88234.t1 AT1G64760 32.948 346 213 12 13 349 11 346 1.29e-49 174
MS.gene88234.t1 AT3G55780 36.634 303 176 9 42 336 48 342 1.50e-49 171
MS.gene88234.t1 AT2G19440 33.234 337 206 12 22 349 16 342 2.00e-48 171
MS.gene88234.t1 AT2G19440 33.234 337 206 12 22 349 16 342 2.00e-48 171
MS.gene88234.t1 AT1G33220 31.977 344 214 8 4 345 9 334 2.92e-48 167
MS.gene88234.t1 AT5G20870 32.718 379 222 16 1 359 1 366 5.24e-47 167
MS.gene88234.t1 AT5G18220 28.610 367 248 10 11 371 13 371 2.20e-46 166
MS.gene88234.t1 AT3G04010 30.214 374 240 10 9 371 13 376 6.86e-44 159
MS.gene88234.t1 AT5G58090 31.707 328 209 10 28 347 21 341 9.76e-44 158
MS.gene88234.t1 AT4G31140 29.885 348 223 11 11 347 9 346 1.51e-43 158
MS.gene88234.t1 AT5G64790 27.762 353 240 10 28 372 27 372 5.76e-42 154
MS.gene88234.t1 AT3G24330 31.714 350 222 11 10 349 20 362 1.91e-41 152
MS.gene88234.t1 AT5G58480 31.288 326 209 9 30 347 27 345 1.95e-40 149
MS.gene88234.t1 AT5G20560 30.240 334 219 8 10 337 11 336 1.31e-38 141
MS.gene88234.t1 AT4G17180 29.179 329 211 11 28 347 24 339 9.91e-36 136

Find 64 sgRNAs with CRISPR-Local

Find 85 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTCTTCTCACCATTTC+AGG 0.103870 4.4:-49232793 MS.gene88234:intron
AACAGTTATGCAATTTATTT+TGG 0.148253 4.4:+49232405 None:intergenic
TCAAATGTTGAATTTGTTAT+AGG 0.179247 4.4:-49232517 MS.gene88234:CDS
ACCCTTCTAAAGCTCAAAAT+TGG 0.203490 4.4:-49232462 MS.gene88234:CDS
GTTGAATTTGTTATAGGAAT+TGG 0.226002 4.4:-49232511 MS.gene88234:CDS
CAAATCAATGGCCTAAGTTT+TGG 0.237417 4.4:-49232670 MS.gene88234:CDS
AACAAATTCAACATTTGATT+TGG 0.238369 4.4:+49232522 None:intergenic
TAGTTTAAAGATACCTCATT+AGG 0.279200 4.4:+49232103 None:intergenic
GAGAAAGCAAGTAGAACATT+TGG 0.321710 4.4:+49232544 None:intergenic
AGTTTATAACATTGGATTAC+AGG 0.325008 4.4:-49231714 MS.gene88234:CDS
AATGGCGACGCCGATGAAAT+TGG 0.330096 4.4:-49231923 MS.gene88234:CDS
TTTCAATGTTCTTGCATGTA+TGG 0.347057 4.4:-49231373 MS.gene88234:CDS
TCATCAAGAAATTCAACAAT+TGG 0.359860 4.4:+49232181 None:intergenic
ATTGGAACCAATGGATTTCC+AGG 0.366015 4.4:+49231830 None:intergenic
TCATAATGTAAATTTGTGTT+TGG 0.368318 4.4:+49232046 None:intergenic
ATTTCAACCAAATGAAGGTT+TGG 0.371282 4.4:-49232074 MS.gene88234:CDS
TATGCTGCAATCAAAGTGAT+AGG 0.372456 4.4:-49231992 MS.gene88234:CDS
GGATCAACCAAACCTTCATT+TGG 0.387383 4.4:+49232067 None:intergenic
GTATACCAATGTTGAAGTTA+AGG 0.389324 4.4:-49231969 MS.gene88234:CDS
TGTAATCCAATGTTATAAAC+TGG 0.399547 4.4:+49231716 None:intergenic
CCTGCTTCAGAAAGAAACTA+TGG 0.401079 4.4:-49231761 MS.gene88234:CDS
AGTTTAAAGATACCTCATTA+GGG 0.402444 4.4:+49232104 None:intergenic
CATAATTCTCTTGTTAAGCT+TGG 0.406983 4.4:-49232313 MS.gene88234:CDS
AAATAATAAGGAACCTGAAA+TGG 0.423025 4.4:+49232780 None:intergenic
GATTCATTTATGCAAATCAA+TGG 0.436820 4.4:-49232682 MS.gene88234:CDS
CCATAGTTTCTTTCTGAAGC+AGG 0.437326 4.4:+49231761 None:intergenic
GAAGTTAAGGTTTCTGAGAC+AGG 0.447516 4.4:-49231956 MS.gene88234:CDS
CTGTTGTAACAGTAATTACT+TGG 0.448483 4.4:+49232284 None:intergenic
ATGGTTACATGGTTGATCTT+CGG 0.449175 4.4:-49231354 MS.gene88234:CDS
AAGTGATTTGAAGAAGGAAA+AGG 0.449912 4.4:+49232819 None:intergenic
AATTCTTACCCTCCTTCGTC+CGG 0.452125 4.4:-49232238 MS.gene88234:CDS
GAGGAAAGACATGGAACTCC+TGG 0.456953 4.4:-49231848 MS.gene88234:CDS
AAAATAAATTGCATAACTGT+TGG 0.468767 4.4:-49232403 MS.gene88234:CDS
CAAATCTGACCTAAAAGAAC+CGG 0.469027 4.4:+49232219 None:intergenic
ACAGGGTTATCTACCACAAA+TGG 0.472431 4.4:-49231696 MS.gene88234:CDS
GAGACAGGTTGGCCTTCAAA+TGG 0.474442 4.4:-49231941 MS.gene88234:CDS
GCATTATTTCAACCAAATGA+AGG 0.475383 4.4:-49232079 MS.gene88234:CDS
CATAGTTTATTCCAAAACTT+AGG 0.484241 4.4:+49232659 None:intergenic
GGTAGACCAGTTTATAACAT+TGG 0.488178 4.4:-49231722 MS.gene88234:CDS
GAAAAGAAGTGATTTGAAGA+AGG 0.488719 4.4:+49232813 None:intergenic
TTTCTTTCTGAAGCAGGACC+AGG 0.491860 4.4:+49231767 None:intergenic
AAATTTGCTTAGAAGAATTG+AGG 0.496626 4.4:-49231867 MS.gene88234:CDS
TTATAAACTGGTCTACCATC+AGG 0.497918 4.4:+49231728 None:intergenic
TTCTTGCATGTATGGTTACA+TGG 0.499859 4.4:-49231365 MS.gene88234:CDS
TTGGATGGCACAACCATTTG+TGG 0.503269 4.4:+49231683 None:intergenic
TATACATCAATTGGAACCAA+TGG 0.507282 4.4:+49231821 None:intergenic
TCATCGGCGTCGCCATTTGA+AGG 0.508122 4.4:+49231929 None:intergenic
TGGTGTAGCACCAATTTCAT+CGG 0.510200 4.4:+49231913 None:intergenic
AGAAACCTTAACTTCAACAT+TGG 0.523456 4.4:+49231964 None:intergenic
TTGCTTACATTAGATTTGGA+TGG 0.524160 4.4:+49231668 None:intergenic
TCTTGAATGAGATGGTAGAT+TGG 0.531449 4.4:+49232624 None:intergenic
TTTAATGAAGATTTAAAACC+TGG 0.550510 4.4:-49231785 MS.gene88234:CDS
TATGGACTTTATTATCCTGA+TGG 0.553442 4.4:-49231743 MS.gene88234:CDS
TGGAACTCCTGGAAATCCAT+TGG 0.557029 4.4:-49231837 MS.gene88234:CDS
TTAAGGTTTCTGAGACAGGT+TGG 0.560373 4.4:-49231952 MS.gene88234:CDS
TAAAAGAACCGGACGAAGGA+GGG 0.563985 4.4:+49232230 None:intergenic
ATGCTGCAATCAAAGTGATA+GGG 0.595645 4.4:-49231991 MS.gene88234:CDS
GTTTATAACATTGGATTACA+GGG 0.597138 4.4:-49231713 MS.gene88234:CDS
ACTGCAACTCTTGAATGAGA+TGG 0.599503 4.4:+49232616 None:intergenic
CTAAAAGAACCGGACGAAGG+AGG 0.620046 4.4:+49232229 None:intergenic
ATATAAAGATAACCCTAATG+AGG 0.620782 4.4:-49232116 MS.gene88234:CDS
AGAAGAATTGAGGAAAGACA+TGG 0.624353 4.4:-49231857 MS.gene88234:CDS
CAAAATGCAAAATTGTACAA+TGG 0.632067 4.4:-49231890 MS.gene88234:CDS
GACCTAAAAGAACCGGACGA+AGG 0.662778 4.4:+49232226 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTATTTTTTATTTATGCT+TGG - chr4.4:49232666-49232685 MS.gene88234:CDS 10.0%
!! ACATAAAAATTAATCTGAAA+AGG + chr4.4:49232527-49232546 None:intergenic 15.0%
!! TATCTTTATATGCAAAAAAA+GGG + chr4.4:49232033-49232052 None:intergenic 15.0%
!! TTAAAAACTACTACAAAAAT+TGG + chr4.4:49232711-49232730 None:intergenic 15.0%
!! TTATCTTTATATGCAAAAAA+AGG + chr4.4:49232034-49232053 None:intergenic 15.0%
!! AAAATAAATTGCATAACTGT+TGG - chr4.4:49231755-49231774 MS.gene88234:CDS 20.0%
!! AACAAATTCAACATTTGATT+TGG + chr4.4:49231639-49231658 None:intergenic 20.0%
!! TAGAGAGAAGATAAATAATA+AGG + chr4.4:49231393-49231412 None:intergenic 20.0%
!! TCATAATGTAAATTTGTGTT+TGG + chr4.4:49232115-49232134 None:intergenic 20.0%
!!! AACAGTTATGCAATTTATTT+TGG + chr4.4:49231756-49231775 None:intergenic 20.0%
!!! AATTTATTTTGGTTTGTGAA+AGG + chr4.4:49231745-49231764 None:intergenic 20.0%
!!! AATTTTGCTTACATTAGATT+TGG + chr4.4:49232497-49232516 None:intergenic 20.0%
!!! TCAAATGTTGAATTTGTTAT+AGG - chr4.4:49231641-49231660 MS.gene88234:intron 20.0%
!!! TTTAATGAAGATTTAAAACC+TGG - chr4.4:49232373-49232392 MS.gene88234:CDS 20.0%
! AAATAATAAGGAACCTGAAA+TGG + chr4.4:49231381-49231400 None:intergenic 25.0%
! AGTTTAAAGATACCTCATTA+GGG + chr4.4:49232057-49232076 None:intergenic 25.0%
! AGTTTATAACATTGGATTAC+AGG - chr4.4:49232444-49232463 MS.gene88234:CDS 25.0%
! ATATAAAGATAACCCTAATG+AGG - chr4.4:49232042-49232061 MS.gene88234:CDS 25.0%
! CAAAATGCAAAATTGTACAA+TGG - chr4.4:49232268-49232287 MS.gene88234:CDS 25.0%
! CATAGTTTATTCCAAAACTT+AGG + chr4.4:49231502-49231521 None:intergenic 25.0%
! GATTCATTTATGCAAATCAA+TGG - chr4.4:49231476-49231495 MS.gene88234:intron 25.0%
! GCAAAAACATATACATCAAT+TGG + chr4.4:49232349-49232368 None:intergenic 25.0%
! GTTTATAACATTGGATTACA+GGG - chr4.4:49232445-49232464 MS.gene88234:CDS 25.0%
! TAGTTTAAAGATACCTCATT+AGG + chr4.4:49232058-49232077 None:intergenic 25.0%
! TCATCAAGAAATTCAACAAT+TGG + chr4.4:49231980-49231999 None:intergenic 25.0%
! TGTAATCCAATGTTATAAAC+TGG + chr4.4:49232445-49232464 None:intergenic 25.0%
!! AAATTTGCTTAGAAGAATTG+AGG - chr4.4:49232291-49232310 MS.gene88234:CDS 25.0%
!! AGCTCATTCTTTTAACATTT+TGG - chr4.4:49231895-49231914 MS.gene88234:CDS 25.0%
!! GATTAATTTTTATGTAGCGA+CGG - chr4.4:49232532-49232551 MS.gene88234:CDS 25.0%
!! TTATGAACATTTTGCATTGA+AGG + chr4.4:49231830-49231849 None:intergenic 25.0%
!! TTGTACAATTTTGCATTTTG+TGG + chr4.4:49232268-49232287 None:intergenic 25.0%
!!! CTAAGTTTTGGAATAAACTA+TGG - chr4.4:49231500-49231519 MS.gene88234:intron 25.0%
!!! GTTGAATTTGTTATAGGAAT+TGG - chr4.4:49231647-49231666 MS.gene88234:intron 25.0%
AAGTGATTTGAAGAAGGAAA+AGG + chr4.4:49231342-49231361 None:intergenic 30.0%
AGAAACCTTAACTTCAACAT+TGG + chr4.4:49232197-49232216 None:intergenic 30.0%
ATGCTTGGCTATTAGATTAT+TGG - chr4.4:49232681-49232700 MS.gene88234:CDS 30.0%
ATTTCAACCAAATGAAGGTT+TGG - chr4.4:49232084-49232103 MS.gene88234:CDS 30.0%
CATAATTCTCTTGTTAAGCT+TGG - chr4.4:49231845-49231864 MS.gene88234:CDS 30.0%
CTGTTGTAACAGTAATTACT+TGG + chr4.4:49231877-49231896 None:intergenic 30.0%
GAAAAGAAGTGATTTGAAGA+AGG + chr4.4:49231348-49231367 None:intergenic 30.0%
GCATTATTTCAACCAAATGA+AGG - chr4.4:49232079-49232098 MS.gene88234:CDS 30.0%
GTATACCAATGTTGAAGTTA+AGG - chr4.4:49232189-49232208 MS.gene88234:CDS 30.0%
TATACATCAATTGGAACCAA+TGG + chr4.4:49232340-49232359 None:intergenic 30.0%
TATGGACTTTATTATCCTGA+TGG - chr4.4:49232415-49232434 MS.gene88234:CDS 30.0%
TTGCTTACATTAGATTTGGA+TGG + chr4.4:49232493-49232512 None:intergenic 30.0%
TTTCAATGTTCTTGCATGTA+TGG - chr4.4:49232785-49232804 MS.gene88234:intron 30.0%
!!! ATCCAATTTTGAGCTTTAGA+AGG + chr4.4:49231701-49231720 None:intergenic 30.0%
!!! ATTTTGGTTTGTGAAAGGTA+AGG + chr4.4:49231740-49231759 None:intergenic 30.0%
!!! TCCAATTTTGAGCTTTAGAA+GGG + chr4.4:49231700-49231719 None:intergenic 30.0%
AGAAGAATTGAGGAAAGACA+TGG - chr4.4:49232301-49232320 MS.gene88234:CDS 35.0%
ATGCTGCAATCAAAGTGATA+GGG - chr4.4:49232167-49232186 MS.gene88234:CDS 35.0%
ATGGTTACATGGTTGATCTT+CGG - chr4.4:49232804-49232823 MS.gene88234:CDS 35.0%
CAAATCTGACCTAAAAGAAC+CGG + chr4.4:49231942-49231961 None:intergenic 35.0%
GAGAAAGCAAGTAGAACATT+TGG + chr4.4:49231617-49231636 None:intergenic 35.0%
GGTAGACCAGTTTATAACAT+TGG - chr4.4:49232436-49232455 MS.gene88234:CDS 35.0%
TATGCTGCAATCAAAGTGAT+AGG - chr4.4:49232166-49232185 MS.gene88234:CDS 35.0%
TCTTGAATGAGATGGTAGAT+TGG + chr4.4:49231537-49231556 None:intergenic 35.0%
TTCTTGCATGTATGGTTACA+TGG - chr4.4:49232793-49232812 MS.gene88234:intron 35.0%
TTCTTTCTTCTCACCATTTC+AGG - chr4.4:49231365-49231384 MS.gene88234:CDS 35.0%
! CAAATCAATGGCCTAAGTTT+TGG - chr4.4:49231488-49231507 MS.gene88234:intron 35.0%
! TTATAAACTGGTCTACCATC+AGG + chr4.4:49232433-49232452 None:intergenic 35.0%
!! ACCCTTCTAAAGCTCAAAAT+TGG - chr4.4:49231696-49231715 MS.gene88234:CDS 35.0%
ACAGGGTTATCTACCACAAA+TGG - chr4.4:49232462-49232481 MS.gene88234:CDS 40.0%
ACCTGCATCAAATCACATCT+CGG + chr4.4:49232614-49232633 None:intergenic 40.0%
ACTGCAACTCTTGAATGAGA+TGG + chr4.4:49231545-49231564 None:intergenic 40.0%
CCTGCTTCAGAAAGAAACTA+TGG - chr4.4:49232397-49232416 MS.gene88234:CDS 40.0%
GGATCAACCAAACCTTCATT+TGG + chr4.4:49232094-49232113 None:intergenic 40.0%
TGGTGTAGCACCAATTTCAT+CGG + chr4.4:49232248-49232267 None:intergenic 40.0%
! ATTGGAACCAATGGATTTCC+AGG + chr4.4:49232331-49232350 None:intergenic 40.0%
!! CCATAGTTTCTTTCTGAAGC+AGG + chr4.4:49232400-49232419 None:intergenic 40.0%
!! GAAGTTAAGGTTTCTGAGAC+AGG - chr4.4:49232202-49232221 MS.gene88234:CDS 40.0%
!! TTAAGGTTTCTGAGACAGGT+TGG - chr4.4:49232206-49232225 MS.gene88234:CDS 40.0%
AATTCTTACCCTCCTTCGTC+CGG - chr4.4:49231920-49231939 MS.gene88234:CDS 45.0%
TAAAAGAACCGGACGAAGGA+GGG + chr4.4:49231931-49231950 None:intergenic 45.0%
TCCGAGATGTGATTTGATGC+AGG - chr4.4:49232610-49232629 MS.gene88234:CDS 45.0%
TGGAACTCCTGGAAATCCAT+TGG - chr4.4:49232321-49232340 MS.gene88234:CDS 45.0%
TTGGATGGCACAACCATTTG+TGG + chr4.4:49232478-49232497 None:intergenic 45.0%
!! TTTCTTTCTGAAGCAGGACC+AGG + chr4.4:49232394-49232413 None:intergenic 45.0%
AATGGCGACGCCGATGAAAT+TGG - chr4.4:49232235-49232254 MS.gene88234:CDS 50.0%
CTAAAAGAACCGGACGAAGG+AGG + chr4.4:49231932-49231951 None:intergenic 50.0%
GACCTAAAAGAACCGGACGA+AGG + chr4.4:49231935-49231954 None:intergenic 50.0%
GAGGAAAGACATGGAACTCC+TGG - chr4.4:49232310-49232329 MS.gene88234:CDS 50.0%
! CTCCTTCGTCCGGTTCTTTT+AGG - chr4.4:49231930-49231949 MS.gene88234:CDS 50.0%
!! GAGACAGGTTGGCCTTCAAA+TGG - chr4.4:49232217-49232236 MS.gene88234:CDS 50.0%
TCATCGGCGTCGCCATTTGA+AGG + chr4.4:49232232-49232251 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 49231332 49232848 49231332 ID=MS.gene88234
chr4.4 mRNA 49231332 49232848 49231332 ID=MS.gene88234.t1;Parent=MS.gene88234
chr4.4 exon 49232794 49232848 49232794 ID=MS.gene88234.t1.exon1;Parent=MS.gene88234.t1
chr4.4 CDS 49232794 49232848 49232794 ID=cds.MS.gene88234.t1;Parent=MS.gene88234.t1
chr4.4 exon 49231676 49232703 49231676 ID=MS.gene88234.t1.exon2;Parent=MS.gene88234.t1
chr4.4 CDS 49231676 49232703 49231676 ID=cds.MS.gene88234.t1;Parent=MS.gene88234.t1
chr4.4 exon 49231332 49231403 49231332 ID=MS.gene88234.t1.exon3;Parent=MS.gene88234.t1
chr4.4 CDS 49231332 49231403 49231332 ID=cds.MS.gene88234.t1;Parent=MS.gene88234.t1
Gene Sequence

>MS.gene88234

ATGACAACCTTTTCCTTCTTCAAATCACTTCTTTTCTTTCTTCTCACCATTTCAGGTTCCTTATTATTTATCTTCTCTCTACTATGCATTTTGTATTATGATATTTTTTTTGTCTATTCTAATGTTTCTAAATATATGATTTCAGATTCATTTATGCAAATCAATGGCCTAAGTTTTGGAATAAACTATGGACAAATAGCAACCAATCTACCATCTCATTCAAGAGTTGCAGTTCTTATAAGATCAATGAATGTGACAAGAATCAAACTCTATGATGCTGATCCAAATGTTCTACTTGCTTTCTCCAAATCAAATGTTGAATTTGTTATAGGAATTGGAAATGAACATCTACAAAATATGACAAACCCTTCTAAAGCTCAAAATTGGATTCAACATCATGTTCTACCTTACCTTTCACAAACCAAAATAAATTGCATAACTGTTGGAAATGAAGTATTCAATAGCAATGATACTCAATTAATTTTGAATCTTCTACCTTCAATGCAAAATGTTCATAATTCTCTTGTTAAGCTTGGATTAGACCAAGTAATTACTGTTACAACAGCTCATTCTTTTAACATTTTGGATAATTCTTACCCTCCTTCGTCCGGTTCTTTTAGGTCAGATTTGATTCAATATATTCAACCAATTGTTGAATTTCTTGATGAAATCAAATCATCTTTTCATATTAATGCTTACCCTTTTTTTGCATATAAAGATAACCCTAATGAGGTATCTTTAAACTATGCATTATTTCAACCAAATGAAGGTTTGGTTGATCCAAACACAAATTTACATTATGATAACATGTTGTATGCTCAAATTGATGCTGTTTATGCTGCAATCAAAGTGATAGGGTATACCAATGTTGAAGTTAAGGTTTCTGAGACAGGTTGGCCTTCAAATGGCGACGCCGATGAAATTGGTGCTACACCACAAAATGCAAAATTGTACAATGGAAATTTGCTTAGAAGAATTGAGGAAAGACATGGAACTCCTGGAAATCCATTGGTTCCAATTGATGTATATGTTTTTGCACTTTTTAATGAAGATTTAAAACCTGGTCCTGCTTCAGAAAGAAACTATGGACTTTATTATCCTGATGGTAGACCAGTTTATAACATTGGATTACAGGGTTATCTACCACAAATGGTTGTGCCATCCAAATCTAATGTAAGCAAAATTCTATTTACCTTTTCAGATTAATTTTTATGTAGCGACGGTGTGCACATTTTTTAAACGAATGATGTCACATTGTTATGTTATTCTTAAAACATCTCCGAGATGTGATTTGATGCAGGTATAAAAAAGTTTCATTAACTGTGTATATGAATTATTATTTTTTATTTATGCTTGGCTATTAGATTATTGGTATTCCAATTTTTGTAGTAGTTTTTAATTTAATGTATCTATTATCTAATACTTCAATCTCTCTTCTTATGCAGATTTTGTCTTTCAATGTTCTTGCATGTATGGTTACATGGTTGATCTTCGGTTTAGAGCTTTTAGAATCATGA

Protein sequence

>MS.gene88234.t1

MTTFSFFKSLLFFLLTISDSFMQINGLSFGINYGQIATNLPSHSRVAVLIRSMNVTRIKLYDADPNVLLAFSKSNVEFVIGIGNEHLQNMTNPSKAQNWIQHHVLPYLSQTKINCITVGNEVFNSNDTQLILNLLPSMQNVHNSLVKLGLDQVITVTTAHSFNILDNSYPPSSGSFRSDLIQYIQPIVEFLDEIKSSFHINAYPFFAYKDNPNEVSLNYALFQPNEGLVDPNTNLHYDNMLYAQIDAVYAAIKVIGYTNVEVKVSETGWPSNGDADEIGATPQNAKLYNGNLLRRIEERHGTPGNPLVPIDVYVFALFNEDLKPGPASERNYGLYYPDGRPVYNIGLQGYLPQMVVPSKSNILSFNVLACMVTWLIFGLELLES