Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88234.t1 | XP_013455825.1 | 97.4 | 384 | 10 | 0 | 1 | 384 | 1 | 384 | 5.50E-213 | 750 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88234.t1 | Q9ZQG9 | 60.5 | 380 | 141 | 3 | 6 | 379 | 9 | 385 | 7.2e-137 | 488.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88234.t1 | A0A072UKG4 | 97.4 | 384 | 10 | 0 | 1 | 384 | 1 | 384 | 4.0e-213 | 750.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049488 | MS.gene88234 | 0.801557 | 8.51E-49 | -1.69E-46 |
MS.gene051692 | MS.gene88234 | 0.80874 | 2.67E-50 | -1.69E-46 |
MS.gene052485 | MS.gene88234 | 0.813327 | 2.71E-51 | -1.69E-46 |
MS.gene055116 | MS.gene88234 | 0.807567 | 4.75E-50 | -1.69E-46 |
MS.gene05702 | MS.gene88234 | 0.818105 | 2.33E-52 | -1.69E-46 |
MS.gene057749 | MS.gene88234 | 0.849812 | 2.54E-60 | -1.69E-46 |
MS.gene057823 | MS.gene88234 | 0.852161 | 5.53E-61 | -1.69E-46 |
MS.gene059285 | MS.gene88234 | 0.804017 | 2.64E-49 | -1.69E-46 |
MS.gene059420 | MS.gene88234 | 0.808912 | 2.45E-50 | -1.69E-46 |
MS.gene06037 | MS.gene88234 | 0.801255 | 9.81E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene88234 | MS.gene056701 | PPI |
MS.gene88234 | MS.gene68221 | PPI |
MS.gene064895 | MS.gene88234 | PPI |
MS.gene88234 | MS.gene45685 | PPI |
MS.gene88234 | MS.gene003763 | PPI |
MS.gene88234 | MS.gene014280 | PPI |
MS.gene88234 | MS.gene50078 | PPI |
MS.gene063164 | MS.gene88234 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88234.t1 | MTR_4g052970 | 97.396 | 384 | 10 | 0 | 1 | 384 | 1 | 384 | 0.0 | 763 |
MS.gene88234.t1 | MTR_2g086530 | 64.599 | 387 | 129 | 2 | 1 | 381 | 1 | 385 | 0.0 | 511 |
MS.gene88234.t1 | MTR_2g086530 | 66.120 | 366 | 116 | 2 | 22 | 381 | 1 | 364 | 3.29e-177 | 498 |
MS.gene88234.t1 | MTR_1g077990 | 59.062 | 320 | 130 | 1 | 28 | 347 | 30 | 348 | 1.77e-140 | 406 |
MS.gene88234.t1 | MTR_4g084480 | 51.613 | 341 | 163 | 1 | 10 | 350 | 15 | 353 | 1.28e-128 | 375 |
MS.gene88234.t1 | MTR_4g084480 | 51.613 | 341 | 163 | 1 | 10 | 350 | 15 | 353 | 2.45e-128 | 375 |
MS.gene88234.t1 | MTR_4g084480 | 51.613 | 341 | 163 | 1 | 10 | 350 | 8 | 346 | 2.51e-128 | 374 |
MS.gene88234.t1 | MTR_2g019345 | 51.553 | 322 | 155 | 1 | 26 | 347 | 21 | 341 | 2.27e-122 | 359 |
MS.gene88234.t1 | MTR_4g010200 | 43.681 | 364 | 196 | 3 | 9 | 366 | 8 | 368 | 9.79e-110 | 327 |
MS.gene88234.t1 | MTR_4g114850 | 47.368 | 323 | 169 | 1 | 28 | 349 | 25 | 347 | 1.09e-108 | 324 |
MS.gene88234.t1 | MTR_4g114850 | 47.368 | 323 | 169 | 1 | 28 | 349 | 25 | 347 | 1.27e-108 | 323 |
MS.gene88234.t1 | MTR_4g114850 | 47.368 | 323 | 169 | 1 | 28 | 349 | 25 | 347 | 1.66e-108 | 323 |
MS.gene88234.t1 | MTR_3g080410 | 46.866 | 335 | 166 | 5 | 25 | 350 | 22 | 353 | 1.58e-98 | 297 |
MS.gene88234.t1 | MTR_4g069940 | 44.868 | 341 | 186 | 2 | 9 | 347 | 8 | 348 | 1.31e-97 | 298 |
MS.gene88234.t1 | MTR_1g056640 | 47.059 | 323 | 166 | 4 | 28 | 347 | 37 | 357 | 2.90e-95 | 293 |
MS.gene88234.t1 | MTR_1g007810 | 44.648 | 327 | 173 | 4 | 20 | 344 | 9 | 329 | 3.79e-95 | 289 |
MS.gene88234.t1 | MTR_5g085580 | 46.483 | 327 | 168 | 4 | 25 | 347 | 21 | 344 | 1.23e-94 | 291 |
MS.gene88234.t1 | MTR_1g022160 | 44.237 | 321 | 177 | 2 | 29 | 347 | 24 | 344 | 1.24e-94 | 289 |
MS.gene88234.t1 | MTR_3g116510 | 43.529 | 340 | 189 | 3 | 10 | 347 | 9 | 347 | 2.36e-94 | 290 |
MS.gene88234.t1 | MTR_1g022160 | 44.237 | 321 | 177 | 2 | 29 | 347 | 24 | 344 | 8.46e-94 | 289 |
MS.gene88234.t1 | MTR_1g022160 | 44.237 | 321 | 177 | 2 | 29 | 347 | 24 | 344 | 1.07e-93 | 289 |
MS.gene88234.t1 | MTR_1g022160 | 44.237 | 321 | 177 | 2 | 29 | 347 | 24 | 344 | 1.88e-93 | 288 |
MS.gene88234.t1 | MTR_6g088885 | 43.425 | 327 | 177 | 3 | 30 | 352 | 28 | 350 | 2.13e-89 | 278 |
MS.gene88234.t1 | MTR_7g053500 | 39.521 | 334 | 196 | 5 | 30 | 358 | 27 | 359 | 6.80e-86 | 268 |
MS.gene88234.t1 | MTR_7g026340 | 42.236 | 322 | 178 | 6 | 28 | 347 | 22 | 337 | 1.93e-83 | 261 |
MS.gene88234.t1 | MTR_8g102340 | 42.683 | 328 | 150 | 5 | 24 | 349 | 23 | 314 | 3.67e-80 | 254 |
MS.gene88234.t1 | MTR_4g088155 | 37.572 | 346 | 205 | 6 | 11 | 349 | 8 | 349 | 2.01e-78 | 249 |
MS.gene88234.t1 | MTR_8g012400 | 37.681 | 345 | 206 | 7 | 14 | 353 | 17 | 357 | 2.37e-78 | 249 |
MS.gene88234.t1 | MTR_1g031900 | 38.261 | 345 | 204 | 5 | 10 | 349 | 7 | 347 | 9.93e-78 | 248 |
MS.gene88234.t1 | MTR_1g031900 | 38.261 | 345 | 204 | 5 | 10 | 349 | 7 | 347 | 1.11e-77 | 248 |
MS.gene88234.t1 | MTR_4g083500 | 42.188 | 320 | 180 | 5 | 30 | 347 | 45 | 361 | 1.98e-76 | 246 |
MS.gene88234.t1 | MTR_8g085720 | 36.648 | 352 | 218 | 3 | 8 | 355 | 5 | 355 | 5.17e-75 | 241 |
MS.gene88234.t1 | MTR_4g076490 | 37.870 | 338 | 194 | 6 | 15 | 349 | 81 | 405 | 5.13e-73 | 234 |
MS.gene88234.t1 | MTR_3g065460 | 37.615 | 327 | 195 | 4 | 29 | 349 | 24 | 347 | 3.66e-72 | 233 |
MS.gene88234.t1 | MTR_4g132280 | 37.462 | 331 | 202 | 3 | 23 | 349 | 39 | 368 | 1.26e-71 | 233 |
MS.gene88234.t1 | MTR_4g076470 | 37.612 | 335 | 192 | 7 | 10 | 343 | 6 | 324 | 1.59e-71 | 227 |
MS.gene88234.t1 | MTR_4g076440 | 37.870 | 338 | 196 | 8 | 9 | 345 | 2 | 326 | 1.95e-70 | 224 |
MS.gene88234.t1 | MTR_1g052430 | 39.169 | 337 | 187 | 9 | 27 | 360 | 30 | 351 | 8.72e-70 | 225 |
MS.gene88234.t1 | MTR_7g053500 | 39.286 | 280 | 164 | 5 | 84 | 358 | 4 | 282 | 3.81e-69 | 223 |
MS.gene88234.t1 | MTR_4g076255 | 38.050 | 318 | 184 | 5 | 28 | 345 | 24 | 328 | 1.07e-68 | 219 |
MS.gene88234.t1 | MTR_5g078200 | 35.057 | 348 | 216 | 5 | 9 | 349 | 2 | 346 | 2.64e-68 | 227 |
MS.gene88234.t1 | MTR_3g083580 | 34.808 | 339 | 210 | 6 | 12 | 343 | 10 | 344 | 3.13e-68 | 223 |
MS.gene88234.t1 | MTR_4g076570 | 39.062 | 320 | 187 | 5 | 28 | 346 | 21 | 333 | 9.21e-68 | 218 |
MS.gene88234.t1 | MTR_4g076430 | 37.059 | 340 | 196 | 9 | 9 | 345 | 2 | 326 | 3.64e-67 | 216 |
MS.gene88234.t1 | MTR_2g034470 | 37.764 | 331 | 194 | 8 | 22 | 349 | 23 | 344 | 6.94e-65 | 211 |
MS.gene88234.t1 | MTR_5g078200 | 36.076 | 316 | 193 | 4 | 40 | 349 | 1 | 313 | 7.87e-65 | 217 |
MS.gene88234.t1 | MTR_2g034440 | 37.578 | 322 | 189 | 8 | 22 | 340 | 15 | 327 | 2.61e-63 | 206 |
MS.gene88234.t1 | MTR_2g034480 | 35.362 | 345 | 213 | 7 | 7 | 349 | 5 | 341 | 6.32e-63 | 206 |
MS.gene88234.t1 | MTR_4g076500 | 36.599 | 347 | 198 | 8 | 3 | 339 | 46 | 380 | 8.10e-63 | 206 |
MS.gene88234.t1 | MTR_7g081350 | 33.968 | 315 | 198 | 6 | 30 | 343 | 28 | 333 | 1.28e-62 | 204 |
MS.gene88234.t1 | MTR_3g116510 | 46.009 | 213 | 115 | 0 | 135 | 347 | 1 | 213 | 3.15e-62 | 203 |
MS.gene88234.t1 | MTR_2g034470 | 38.486 | 317 | 183 | 8 | 36 | 349 | 2 | 309 | 4.00e-62 | 202 |
MS.gene88234.t1 | MTR_8g012400 | 38.182 | 275 | 164 | 5 | 84 | 353 | 4 | 277 | 1.40e-61 | 203 |
MS.gene88234.t1 | MTR_7g081370 | 31.953 | 338 | 207 | 7 | 7 | 343 | 6 | 321 | 1.43e-55 | 186 |
MS.gene88234.t1 | MTR_8g092070 | 32.927 | 328 | 205 | 10 | 30 | 349 | 35 | 355 | 5.03e-54 | 188 |
MS.gene88234.t1 | MTR_1g010120 | 32.353 | 374 | 225 | 13 | 7 | 363 | 6 | 368 | 1.74e-51 | 179 |
MS.gene88234.t1 | MTR_2g027560 | 33.739 | 329 | 203 | 10 | 28 | 347 | 27 | 349 | 1.67e-47 | 168 |
MS.gene88234.t1 | MTR_5g081720 | 34.259 | 324 | 200 | 9 | 26 | 344 | 34 | 349 | 1.32e-46 | 163 |
MS.gene88234.t1 | MTR_7g085390 | 30.899 | 356 | 224 | 13 | 28 | 371 | 25 | 370 | 2.85e-46 | 165 |
MS.gene88234.t1 | MTR_4g124440 | 29.972 | 357 | 229 | 13 | 4 | 349 | 3 | 349 | 2.98e-46 | 165 |
MS.gene88234.t1 | MTR_6g032820 | 32.011 | 353 | 214 | 13 | 5 | 343 | 4 | 344 | 7.57e-46 | 163 |
MS.gene88234.t1 | MTR_3g108600 | 32.308 | 325 | 188 | 10 | 30 | 347 | 32 | 331 | 5.65e-44 | 159 |
MS.gene88234.t1 | MTR_1g053320 | 30.571 | 350 | 222 | 11 | 10 | 349 | 16 | 354 | 5.79e-44 | 159 |
MS.gene88234.t1 | MTR_4g112025 | 31.680 | 363 | 221 | 14 | 2 | 350 | 6 | 355 | 2.41e-43 | 158 |
MS.gene88234.t1 | MTR_3g095050 | 30.882 | 340 | 210 | 15 | 28 | 353 | 33 | 361 | 2.58e-43 | 157 |
MS.gene88234.t1 | MTR_3g031770 | 30.168 | 358 | 224 | 12 | 28 | 376 | 26 | 366 | 2.66e-38 | 144 |
MS.gene88234.t1 | MTR_4g134280 | 34.799 | 273 | 152 | 11 | 116 | 369 | 3 | 268 | 4.96e-32 | 124 |
MS.gene88234.t1 | MTR_6g078180 | 74.000 | 50 | 13 | 0 | 92 | 141 | 5 | 54 | 9.66e-20 | 82.8 |
MS.gene88234.t1 | MTR_4g036775 | 38.235 | 102 | 56 | 4 | 245 | 345 | 80 | 175 | 7.02e-15 | 73.6 |
MS.gene88234.t1 | MTR_4g036680 | 38.235 | 102 | 56 | 4 | 245 | 345 | 80 | 175 | 7.89e-15 | 73.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene88234.t1 | AT2G27500 | 61.433 | 363 | 134 | 2 | 23 | 379 | 23 | 385 | 4.33e-174 | 491 |
MS.gene88234.t1 | AT2G27500 | 63.768 | 345 | 124 | 1 | 23 | 366 | 23 | 367 | 2.07e-173 | 488 |
MS.gene88234.t1 | AT2G27500 | 59.935 | 307 | 117 | 2 | 79 | 379 | 1 | 307 | 2.14e-143 | 410 |
MS.gene88234.t1 | AT1G32860 | 53.868 | 349 | 159 | 1 | 1 | 347 | 1 | 349 | 6.66e-139 | 402 |
MS.gene88234.t1 | AT5G42100 | 53.704 | 324 | 147 | 2 | 28 | 348 | 26 | 349 | 1.03e-124 | 366 |
MS.gene88234.t1 | AT5G42100 | 53.704 | 324 | 147 | 2 | 28 | 348 | 26 | 349 | 1.08e-124 | 366 |
MS.gene88234.t1 | AT4G18340 | 48.711 | 349 | 174 | 3 | 3 | 347 | 5 | 352 | 3.71e-122 | 359 |
MS.gene88234.t1 | AT4G18340 | 48.711 | 349 | 174 | 3 | 3 | 347 | 5 | 352 | 4.80e-122 | 358 |
MS.gene88234.t1 | AT1G30080 | 48.368 | 337 | 174 | 0 | 10 | 346 | 17 | 353 | 7.17e-117 | 345 |
MS.gene88234.t1 | AT1G30080 | 48.368 | 337 | 174 | 0 | 10 | 346 | 17 | 353 | 1.10e-116 | 345 |
MS.gene88234.t1 | AT3G15800 | 47.550 | 347 | 178 | 3 | 28 | 370 | 42 | 388 | 5.59e-116 | 343 |
MS.gene88234.t1 | AT2G26600 | 42.265 | 362 | 202 | 3 | 23 | 377 | 25 | 386 | 2.17e-109 | 326 |
MS.gene88234.t1 | AT4G26830 | 46.154 | 338 | 178 | 3 | 10 | 345 | 6 | 341 | 8.85e-103 | 311 |
MS.gene88234.t1 | AT4G26830 | 47.799 | 318 | 162 | 3 | 30 | 345 | 30 | 345 | 1.38e-102 | 311 |
MS.gene88234.t1 | AT5G55180 | 44.510 | 337 | 178 | 4 | 15 | 349 | 19 | 348 | 6.00e-97 | 297 |
MS.gene88234.t1 | AT5G55180 | 44.510 | 337 | 178 | 4 | 15 | 349 | 19 | 348 | 8.80e-97 | 296 |
MS.gene88234.t1 | AT2G05790 | 46.894 | 322 | 164 | 4 | 28 | 345 | 24 | 342 | 7.44e-95 | 291 |
MS.gene88234.t1 | AT4G34480 | 44.543 | 339 | 186 | 2 | 11 | 347 | 7 | 345 | 4.07e-94 | 286 |
MS.gene88234.t1 | AT2G16230 | 45.231 | 325 | 176 | 2 | 25 | 347 | 20 | 344 | 6.57e-94 | 290 |
MS.gene88234.t1 | AT4G34480 | 43.714 | 350 | 195 | 2 | 11 | 358 | 7 | 356 | 4.03e-92 | 286 |
MS.gene88234.t1 | AT5G24318 | 43.168 | 322 | 177 | 3 | 28 | 347 | 29 | 346 | 1.32e-91 | 280 |
MS.gene88234.t1 | AT2G26600 | 43.448 | 290 | 161 | 1 | 91 | 377 | 3 | 292 | 1.23e-90 | 275 |
MS.gene88234.t1 | AT5G24318 | 43.168 | 322 | 177 | 3 | 28 | 347 | 29 | 346 | 3.49e-90 | 279 |
MS.gene88234.t1 | AT5G42720 | 42.733 | 344 | 186 | 4 | 6 | 347 | 12 | 346 | 7.32e-90 | 278 |
MS.gene88234.t1 | AT5G24318 | 43.168 | 322 | 177 | 3 | 28 | 347 | 29 | 346 | 7.50e-90 | 278 |
MS.gene88234.t1 | AT5G56590 | 41.411 | 326 | 189 | 2 | 26 | 349 | 23 | 348 | 5.83e-87 | 272 |
MS.gene88234.t1 | AT4G29360 | 42.690 | 342 | 193 | 3 | 10 | 349 | 7 | 347 | 1.29e-83 | 265 |
MS.gene88234.t1 | AT4G29360 | 42.571 | 350 | 196 | 4 | 4 | 349 | 9 | 357 | 1.42e-83 | 265 |
MS.gene88234.t1 | AT3G07320 | 38.133 | 375 | 216 | 8 | 22 | 381 | 14 | 387 | 8.69e-83 | 260 |
MS.gene88234.t1 | AT2G01630 | 39.385 | 325 | 192 | 3 | 29 | 349 | 23 | 346 | 1.03e-78 | 248 |
MS.gene88234.t1 | AT2G01630 | 39.385 | 325 | 192 | 3 | 29 | 349 | 23 | 346 | 3.03e-78 | 248 |
MS.gene88234.t1 | AT2G01630 | 39.385 | 325 | 192 | 3 | 29 | 349 | 23 | 346 | 3.16e-77 | 247 |
MS.gene88234.t1 | AT2G39640 | 39.706 | 340 | 195 | 5 | 10 | 347 | 9 | 340 | 1.06e-76 | 247 |
MS.gene88234.t1 | AT4G16260 | 38.690 | 336 | 198 | 4 | 10 | 345 | 5 | 332 | 1.73e-76 | 240 |
MS.gene88234.t1 | AT4G14080 | 38.226 | 327 | 197 | 4 | 30 | 352 | 43 | 368 | 1.62e-75 | 242 |
MS.gene88234.t1 | AT3G23770 | 38.838 | 327 | 192 | 5 | 30 | 349 | 38 | 363 | 1.17e-73 | 237 |
MS.gene88234.t1 | AT3G55430 | 38.953 | 344 | 190 | 11 | 28 | 360 | 28 | 362 | 5.58e-73 | 234 |
MS.gene88234.t1 | AT4G16260 | 39.355 | 310 | 180 | 4 | 36 | 345 | 2 | 303 | 2.11e-72 | 229 |
MS.gene88234.t1 | AT3G13560 | 35.913 | 323 | 202 | 3 | 25 | 343 | 22 | 343 | 1.29e-71 | 233 |
MS.gene88234.t1 | AT3G13560 | 35.913 | 323 | 202 | 3 | 25 | 343 | 22 | 343 | 1.29e-71 | 233 |
MS.gene88234.t1 | AT3G13560 | 35.913 | 323 | 202 | 3 | 25 | 343 | 22 | 343 | 1.29e-71 | 233 |
MS.gene88234.t1 | AT3G13560 | 35.913 | 323 | 202 | 3 | 25 | 343 | 22 | 343 | 1.29e-71 | 233 |
MS.gene88234.t1 | AT3G13560 | 35.913 | 323 | 202 | 3 | 25 | 343 | 22 | 343 | 1.29e-71 | 233 |
MS.gene88234.t1 | AT1G11820 | 37.346 | 324 | 198 | 3 | 30 | 349 | 45 | 367 | 6.86e-71 | 227 |
MS.gene88234.t1 | AT1G11820 | 37.346 | 324 | 198 | 3 | 30 | 349 | 45 | 367 | 1.08e-69 | 227 |
MS.gene88234.t1 | AT1G11820 | 37.346 | 324 | 198 | 3 | 30 | 349 | 45 | 367 | 2.82e-69 | 226 |
MS.gene88234.t1 | AT3G57270 | 36.842 | 323 | 192 | 7 | 26 | 345 | 24 | 337 | 9.15e-69 | 220 |
MS.gene88234.t1 | AT4G34480 | 47.737 | 243 | 127 | 0 | 116 | 358 | 3 | 245 | 1.03e-67 | 219 |
MS.gene88234.t1 | AT3G46570 | 38.081 | 344 | 200 | 9 | 10 | 348 | 10 | 345 | 2.04e-66 | 214 |
MS.gene88234.t1 | AT1G66250 | 35.404 | 322 | 202 | 4 | 26 | 343 | 29 | 348 | 2.18e-65 | 216 |
MS.gene88234.t1 | AT3G61810 | 34.365 | 323 | 196 | 5 | 30 | 345 | 56 | 369 | 1.57e-61 | 202 |
MS.gene88234.t1 | AT5G24318 | 45.024 | 211 | 111 | 2 | 138 | 347 | 1 | 207 | 3.82e-58 | 192 |
MS.gene88234.t1 | AT3G57260 | 32.938 | 337 | 212 | 7 | 10 | 345 | 13 | 336 | 5.17e-58 | 192 |
MS.gene88234.t1 | AT3G57260 | 32.938 | 337 | 212 | 7 | 10 | 345 | 29 | 352 | 7.05e-58 | 192 |
MS.gene88234.t1 | AT1G77790 | 35.423 | 319 | 195 | 7 | 30 | 345 | 31 | 341 | 5.48e-57 | 190 |
MS.gene88234.t1 | AT1G77780 | 34.018 | 341 | 214 | 8 | 6 | 345 | 2 | 332 | 8.02e-57 | 190 |
MS.gene88234.t1 | AT5G20340 | 36.137 | 321 | 193 | 9 | 28 | 345 | 42 | 353 | 9.06e-56 | 187 |
MS.gene88234.t1 | AT3G57240 | 34.286 | 315 | 192 | 8 | 30 | 343 | 36 | 336 | 1.70e-54 | 183 |
MS.gene88234.t1 | AT5G20390 | 33.631 | 336 | 211 | 7 | 13 | 345 | 17 | 343 | 4.64e-54 | 182 |
MS.gene88234.t1 | AT5G20330 | 33.913 | 345 | 216 | 9 | 4 | 345 | 9 | 344 | 1.87e-52 | 178 |
MS.gene88234.t1 | AT1G64760 | 32.948 | 346 | 213 | 12 | 13 | 349 | 11 | 346 | 1.29e-49 | 174 |
MS.gene88234.t1 | AT1G64760 | 32.948 | 346 | 213 | 12 | 13 | 349 | 11 | 346 | 1.29e-49 | 174 |
MS.gene88234.t1 | AT3G55780 | 36.634 | 303 | 176 | 9 | 42 | 336 | 48 | 342 | 1.50e-49 | 171 |
MS.gene88234.t1 | AT2G19440 | 33.234 | 337 | 206 | 12 | 22 | 349 | 16 | 342 | 2.00e-48 | 171 |
MS.gene88234.t1 | AT2G19440 | 33.234 | 337 | 206 | 12 | 22 | 349 | 16 | 342 | 2.00e-48 | 171 |
MS.gene88234.t1 | AT1G33220 | 31.977 | 344 | 214 | 8 | 4 | 345 | 9 | 334 | 2.92e-48 | 167 |
MS.gene88234.t1 | AT5G20870 | 32.718 | 379 | 222 | 16 | 1 | 359 | 1 | 366 | 5.24e-47 | 167 |
MS.gene88234.t1 | AT5G18220 | 28.610 | 367 | 248 | 10 | 11 | 371 | 13 | 371 | 2.20e-46 | 166 |
MS.gene88234.t1 | AT3G04010 | 30.214 | 374 | 240 | 10 | 9 | 371 | 13 | 376 | 6.86e-44 | 159 |
MS.gene88234.t1 | AT5G58090 | 31.707 | 328 | 209 | 10 | 28 | 347 | 21 | 341 | 9.76e-44 | 158 |
MS.gene88234.t1 | AT4G31140 | 29.885 | 348 | 223 | 11 | 11 | 347 | 9 | 346 | 1.51e-43 | 158 |
MS.gene88234.t1 | AT5G64790 | 27.762 | 353 | 240 | 10 | 28 | 372 | 27 | 372 | 5.76e-42 | 154 |
MS.gene88234.t1 | AT3G24330 | 31.714 | 350 | 222 | 11 | 10 | 349 | 20 | 362 | 1.91e-41 | 152 |
MS.gene88234.t1 | AT5G58480 | 31.288 | 326 | 209 | 9 | 30 | 347 | 27 | 345 | 1.95e-40 | 149 |
MS.gene88234.t1 | AT5G20560 | 30.240 | 334 | 219 | 8 | 10 | 337 | 11 | 336 | 1.31e-38 | 141 |
MS.gene88234.t1 | AT4G17180 | 29.179 | 329 | 211 | 11 | 28 | 347 | 24 | 339 | 9.91e-36 | 136 |
Find 64 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTTTCTTCTCACCATTTC+AGG | 0.103870 | 4.4:-49232793 | MS.gene88234:intron |
AACAGTTATGCAATTTATTT+TGG | 0.148253 | 4.4:+49232405 | None:intergenic |
TCAAATGTTGAATTTGTTAT+AGG | 0.179247 | 4.4:-49232517 | MS.gene88234:CDS |
ACCCTTCTAAAGCTCAAAAT+TGG | 0.203490 | 4.4:-49232462 | MS.gene88234:CDS |
GTTGAATTTGTTATAGGAAT+TGG | 0.226002 | 4.4:-49232511 | MS.gene88234:CDS |
CAAATCAATGGCCTAAGTTT+TGG | 0.237417 | 4.4:-49232670 | MS.gene88234:CDS |
AACAAATTCAACATTTGATT+TGG | 0.238369 | 4.4:+49232522 | None:intergenic |
TAGTTTAAAGATACCTCATT+AGG | 0.279200 | 4.4:+49232103 | None:intergenic |
GAGAAAGCAAGTAGAACATT+TGG | 0.321710 | 4.4:+49232544 | None:intergenic |
AGTTTATAACATTGGATTAC+AGG | 0.325008 | 4.4:-49231714 | MS.gene88234:CDS |
AATGGCGACGCCGATGAAAT+TGG | 0.330096 | 4.4:-49231923 | MS.gene88234:CDS |
TTTCAATGTTCTTGCATGTA+TGG | 0.347057 | 4.4:-49231373 | MS.gene88234:CDS |
TCATCAAGAAATTCAACAAT+TGG | 0.359860 | 4.4:+49232181 | None:intergenic |
ATTGGAACCAATGGATTTCC+AGG | 0.366015 | 4.4:+49231830 | None:intergenic |
TCATAATGTAAATTTGTGTT+TGG | 0.368318 | 4.4:+49232046 | None:intergenic |
ATTTCAACCAAATGAAGGTT+TGG | 0.371282 | 4.4:-49232074 | MS.gene88234:CDS |
TATGCTGCAATCAAAGTGAT+AGG | 0.372456 | 4.4:-49231992 | MS.gene88234:CDS |
GGATCAACCAAACCTTCATT+TGG | 0.387383 | 4.4:+49232067 | None:intergenic |
GTATACCAATGTTGAAGTTA+AGG | 0.389324 | 4.4:-49231969 | MS.gene88234:CDS |
TGTAATCCAATGTTATAAAC+TGG | 0.399547 | 4.4:+49231716 | None:intergenic |
CCTGCTTCAGAAAGAAACTA+TGG | 0.401079 | 4.4:-49231761 | MS.gene88234:CDS |
AGTTTAAAGATACCTCATTA+GGG | 0.402444 | 4.4:+49232104 | None:intergenic |
CATAATTCTCTTGTTAAGCT+TGG | 0.406983 | 4.4:-49232313 | MS.gene88234:CDS |
AAATAATAAGGAACCTGAAA+TGG | 0.423025 | 4.4:+49232780 | None:intergenic |
GATTCATTTATGCAAATCAA+TGG | 0.436820 | 4.4:-49232682 | MS.gene88234:CDS |
CCATAGTTTCTTTCTGAAGC+AGG | 0.437326 | 4.4:+49231761 | None:intergenic |
GAAGTTAAGGTTTCTGAGAC+AGG | 0.447516 | 4.4:-49231956 | MS.gene88234:CDS |
CTGTTGTAACAGTAATTACT+TGG | 0.448483 | 4.4:+49232284 | None:intergenic |
ATGGTTACATGGTTGATCTT+CGG | 0.449175 | 4.4:-49231354 | MS.gene88234:CDS |
AAGTGATTTGAAGAAGGAAA+AGG | 0.449912 | 4.4:+49232819 | None:intergenic |
AATTCTTACCCTCCTTCGTC+CGG | 0.452125 | 4.4:-49232238 | MS.gene88234:CDS |
GAGGAAAGACATGGAACTCC+TGG | 0.456953 | 4.4:-49231848 | MS.gene88234:CDS |
AAAATAAATTGCATAACTGT+TGG | 0.468767 | 4.4:-49232403 | MS.gene88234:CDS |
CAAATCTGACCTAAAAGAAC+CGG | 0.469027 | 4.4:+49232219 | None:intergenic |
ACAGGGTTATCTACCACAAA+TGG | 0.472431 | 4.4:-49231696 | MS.gene88234:CDS |
GAGACAGGTTGGCCTTCAAA+TGG | 0.474442 | 4.4:-49231941 | MS.gene88234:CDS |
GCATTATTTCAACCAAATGA+AGG | 0.475383 | 4.4:-49232079 | MS.gene88234:CDS |
CATAGTTTATTCCAAAACTT+AGG | 0.484241 | 4.4:+49232659 | None:intergenic |
GGTAGACCAGTTTATAACAT+TGG | 0.488178 | 4.4:-49231722 | MS.gene88234:CDS |
GAAAAGAAGTGATTTGAAGA+AGG | 0.488719 | 4.4:+49232813 | None:intergenic |
TTTCTTTCTGAAGCAGGACC+AGG | 0.491860 | 4.4:+49231767 | None:intergenic |
AAATTTGCTTAGAAGAATTG+AGG | 0.496626 | 4.4:-49231867 | MS.gene88234:CDS |
TTATAAACTGGTCTACCATC+AGG | 0.497918 | 4.4:+49231728 | None:intergenic |
TTCTTGCATGTATGGTTACA+TGG | 0.499859 | 4.4:-49231365 | MS.gene88234:CDS |
TTGGATGGCACAACCATTTG+TGG | 0.503269 | 4.4:+49231683 | None:intergenic |
TATACATCAATTGGAACCAA+TGG | 0.507282 | 4.4:+49231821 | None:intergenic |
TCATCGGCGTCGCCATTTGA+AGG | 0.508122 | 4.4:+49231929 | None:intergenic |
TGGTGTAGCACCAATTTCAT+CGG | 0.510200 | 4.4:+49231913 | None:intergenic |
AGAAACCTTAACTTCAACAT+TGG | 0.523456 | 4.4:+49231964 | None:intergenic |
TTGCTTACATTAGATTTGGA+TGG | 0.524160 | 4.4:+49231668 | None:intergenic |
TCTTGAATGAGATGGTAGAT+TGG | 0.531449 | 4.4:+49232624 | None:intergenic |
TTTAATGAAGATTTAAAACC+TGG | 0.550510 | 4.4:-49231785 | MS.gene88234:CDS |
TATGGACTTTATTATCCTGA+TGG | 0.553442 | 4.4:-49231743 | MS.gene88234:CDS |
TGGAACTCCTGGAAATCCAT+TGG | 0.557029 | 4.4:-49231837 | MS.gene88234:CDS |
TTAAGGTTTCTGAGACAGGT+TGG | 0.560373 | 4.4:-49231952 | MS.gene88234:CDS |
TAAAAGAACCGGACGAAGGA+GGG | 0.563985 | 4.4:+49232230 | None:intergenic |
ATGCTGCAATCAAAGTGATA+GGG | 0.595645 | 4.4:-49231991 | MS.gene88234:CDS |
GTTTATAACATTGGATTACA+GGG | 0.597138 | 4.4:-49231713 | MS.gene88234:CDS |
ACTGCAACTCTTGAATGAGA+TGG | 0.599503 | 4.4:+49232616 | None:intergenic |
CTAAAAGAACCGGACGAAGG+AGG | 0.620046 | 4.4:+49232229 | None:intergenic |
ATATAAAGATAACCCTAATG+AGG | 0.620782 | 4.4:-49232116 | MS.gene88234:CDS |
AGAAGAATTGAGGAAAGACA+TGG | 0.624353 | 4.4:-49231857 | MS.gene88234:CDS |
CAAAATGCAAAATTGTACAA+TGG | 0.632067 | 4.4:-49231890 | MS.gene88234:CDS |
GACCTAAAAGAACCGGACGA+AGG | 0.662778 | 4.4:+49232226 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTATTTTTTATTTATGCT+TGG | - | chr4.4:49232666-49232685 | MS.gene88234:CDS | 10.0% |
!! | ACATAAAAATTAATCTGAAA+AGG | + | chr4.4:49232527-49232546 | None:intergenic | 15.0% |
!! | TATCTTTATATGCAAAAAAA+GGG | + | chr4.4:49232033-49232052 | None:intergenic | 15.0% |
!! | TTAAAAACTACTACAAAAAT+TGG | + | chr4.4:49232711-49232730 | None:intergenic | 15.0% |
!! | TTATCTTTATATGCAAAAAA+AGG | + | chr4.4:49232034-49232053 | None:intergenic | 15.0% |
!! | AAAATAAATTGCATAACTGT+TGG | - | chr4.4:49231755-49231774 | MS.gene88234:CDS | 20.0% |
!! | AACAAATTCAACATTTGATT+TGG | + | chr4.4:49231639-49231658 | None:intergenic | 20.0% |
!! | TAGAGAGAAGATAAATAATA+AGG | + | chr4.4:49231393-49231412 | None:intergenic | 20.0% |
!! | TCATAATGTAAATTTGTGTT+TGG | + | chr4.4:49232115-49232134 | None:intergenic | 20.0% |
!!! | AACAGTTATGCAATTTATTT+TGG | + | chr4.4:49231756-49231775 | None:intergenic | 20.0% |
!!! | AATTTATTTTGGTTTGTGAA+AGG | + | chr4.4:49231745-49231764 | None:intergenic | 20.0% |
!!! | AATTTTGCTTACATTAGATT+TGG | + | chr4.4:49232497-49232516 | None:intergenic | 20.0% |
!!! | TCAAATGTTGAATTTGTTAT+AGG | - | chr4.4:49231641-49231660 | MS.gene88234:intron | 20.0% |
!!! | TTTAATGAAGATTTAAAACC+TGG | - | chr4.4:49232373-49232392 | MS.gene88234:CDS | 20.0% |
! | AAATAATAAGGAACCTGAAA+TGG | + | chr4.4:49231381-49231400 | None:intergenic | 25.0% |
! | AGTTTAAAGATACCTCATTA+GGG | + | chr4.4:49232057-49232076 | None:intergenic | 25.0% |
! | AGTTTATAACATTGGATTAC+AGG | - | chr4.4:49232444-49232463 | MS.gene88234:CDS | 25.0% |
! | ATATAAAGATAACCCTAATG+AGG | - | chr4.4:49232042-49232061 | MS.gene88234:CDS | 25.0% |
! | CAAAATGCAAAATTGTACAA+TGG | - | chr4.4:49232268-49232287 | MS.gene88234:CDS | 25.0% |
! | CATAGTTTATTCCAAAACTT+AGG | + | chr4.4:49231502-49231521 | None:intergenic | 25.0% |
! | GATTCATTTATGCAAATCAA+TGG | - | chr4.4:49231476-49231495 | MS.gene88234:intron | 25.0% |
! | GCAAAAACATATACATCAAT+TGG | + | chr4.4:49232349-49232368 | None:intergenic | 25.0% |
! | GTTTATAACATTGGATTACA+GGG | - | chr4.4:49232445-49232464 | MS.gene88234:CDS | 25.0% |
! | TAGTTTAAAGATACCTCATT+AGG | + | chr4.4:49232058-49232077 | None:intergenic | 25.0% |
! | TCATCAAGAAATTCAACAAT+TGG | + | chr4.4:49231980-49231999 | None:intergenic | 25.0% |
! | TGTAATCCAATGTTATAAAC+TGG | + | chr4.4:49232445-49232464 | None:intergenic | 25.0% |
!! | AAATTTGCTTAGAAGAATTG+AGG | - | chr4.4:49232291-49232310 | MS.gene88234:CDS | 25.0% |
!! | AGCTCATTCTTTTAACATTT+TGG | - | chr4.4:49231895-49231914 | MS.gene88234:CDS | 25.0% |
!! | GATTAATTTTTATGTAGCGA+CGG | - | chr4.4:49232532-49232551 | MS.gene88234:CDS | 25.0% |
!! | TTATGAACATTTTGCATTGA+AGG | + | chr4.4:49231830-49231849 | None:intergenic | 25.0% |
!! | TTGTACAATTTTGCATTTTG+TGG | + | chr4.4:49232268-49232287 | None:intergenic | 25.0% |
!!! | CTAAGTTTTGGAATAAACTA+TGG | - | chr4.4:49231500-49231519 | MS.gene88234:intron | 25.0% |
!!! | GTTGAATTTGTTATAGGAAT+TGG | - | chr4.4:49231647-49231666 | MS.gene88234:intron | 25.0% |
AAGTGATTTGAAGAAGGAAA+AGG | + | chr4.4:49231342-49231361 | None:intergenic | 30.0% | |
AGAAACCTTAACTTCAACAT+TGG | + | chr4.4:49232197-49232216 | None:intergenic | 30.0% | |
ATGCTTGGCTATTAGATTAT+TGG | - | chr4.4:49232681-49232700 | MS.gene88234:CDS | 30.0% | |
ATTTCAACCAAATGAAGGTT+TGG | - | chr4.4:49232084-49232103 | MS.gene88234:CDS | 30.0% | |
CATAATTCTCTTGTTAAGCT+TGG | - | chr4.4:49231845-49231864 | MS.gene88234:CDS | 30.0% | |
CTGTTGTAACAGTAATTACT+TGG | + | chr4.4:49231877-49231896 | None:intergenic | 30.0% | |
GAAAAGAAGTGATTTGAAGA+AGG | + | chr4.4:49231348-49231367 | None:intergenic | 30.0% | |
GCATTATTTCAACCAAATGA+AGG | - | chr4.4:49232079-49232098 | MS.gene88234:CDS | 30.0% | |
GTATACCAATGTTGAAGTTA+AGG | - | chr4.4:49232189-49232208 | MS.gene88234:CDS | 30.0% | |
TATACATCAATTGGAACCAA+TGG | + | chr4.4:49232340-49232359 | None:intergenic | 30.0% | |
TATGGACTTTATTATCCTGA+TGG | - | chr4.4:49232415-49232434 | MS.gene88234:CDS | 30.0% | |
TTGCTTACATTAGATTTGGA+TGG | + | chr4.4:49232493-49232512 | None:intergenic | 30.0% | |
TTTCAATGTTCTTGCATGTA+TGG | - | chr4.4:49232785-49232804 | MS.gene88234:intron | 30.0% | |
!!! | ATCCAATTTTGAGCTTTAGA+AGG | + | chr4.4:49231701-49231720 | None:intergenic | 30.0% |
!!! | ATTTTGGTTTGTGAAAGGTA+AGG | + | chr4.4:49231740-49231759 | None:intergenic | 30.0% |
!!! | TCCAATTTTGAGCTTTAGAA+GGG | + | chr4.4:49231700-49231719 | None:intergenic | 30.0% |
AGAAGAATTGAGGAAAGACA+TGG | - | chr4.4:49232301-49232320 | MS.gene88234:CDS | 35.0% | |
ATGCTGCAATCAAAGTGATA+GGG | - | chr4.4:49232167-49232186 | MS.gene88234:CDS | 35.0% | |
ATGGTTACATGGTTGATCTT+CGG | - | chr4.4:49232804-49232823 | MS.gene88234:CDS | 35.0% | |
CAAATCTGACCTAAAAGAAC+CGG | + | chr4.4:49231942-49231961 | None:intergenic | 35.0% | |
GAGAAAGCAAGTAGAACATT+TGG | + | chr4.4:49231617-49231636 | None:intergenic | 35.0% | |
GGTAGACCAGTTTATAACAT+TGG | - | chr4.4:49232436-49232455 | MS.gene88234:CDS | 35.0% | |
TATGCTGCAATCAAAGTGAT+AGG | - | chr4.4:49232166-49232185 | MS.gene88234:CDS | 35.0% | |
TCTTGAATGAGATGGTAGAT+TGG | + | chr4.4:49231537-49231556 | None:intergenic | 35.0% | |
TTCTTGCATGTATGGTTACA+TGG | - | chr4.4:49232793-49232812 | MS.gene88234:intron | 35.0% | |
TTCTTTCTTCTCACCATTTC+AGG | - | chr4.4:49231365-49231384 | MS.gene88234:CDS | 35.0% | |
! | CAAATCAATGGCCTAAGTTT+TGG | - | chr4.4:49231488-49231507 | MS.gene88234:intron | 35.0% |
! | TTATAAACTGGTCTACCATC+AGG | + | chr4.4:49232433-49232452 | None:intergenic | 35.0% |
!! | ACCCTTCTAAAGCTCAAAAT+TGG | - | chr4.4:49231696-49231715 | MS.gene88234:CDS | 35.0% |
ACAGGGTTATCTACCACAAA+TGG | - | chr4.4:49232462-49232481 | MS.gene88234:CDS | 40.0% | |
ACCTGCATCAAATCACATCT+CGG | + | chr4.4:49232614-49232633 | None:intergenic | 40.0% | |
ACTGCAACTCTTGAATGAGA+TGG | + | chr4.4:49231545-49231564 | None:intergenic | 40.0% | |
CCTGCTTCAGAAAGAAACTA+TGG | - | chr4.4:49232397-49232416 | MS.gene88234:CDS | 40.0% | |
GGATCAACCAAACCTTCATT+TGG | + | chr4.4:49232094-49232113 | None:intergenic | 40.0% | |
TGGTGTAGCACCAATTTCAT+CGG | + | chr4.4:49232248-49232267 | None:intergenic | 40.0% | |
! | ATTGGAACCAATGGATTTCC+AGG | + | chr4.4:49232331-49232350 | None:intergenic | 40.0% |
!! | CCATAGTTTCTTTCTGAAGC+AGG | + | chr4.4:49232400-49232419 | None:intergenic | 40.0% |
!! | GAAGTTAAGGTTTCTGAGAC+AGG | - | chr4.4:49232202-49232221 | MS.gene88234:CDS | 40.0% |
!! | TTAAGGTTTCTGAGACAGGT+TGG | - | chr4.4:49232206-49232225 | MS.gene88234:CDS | 40.0% |
AATTCTTACCCTCCTTCGTC+CGG | - | chr4.4:49231920-49231939 | MS.gene88234:CDS | 45.0% | |
TAAAAGAACCGGACGAAGGA+GGG | + | chr4.4:49231931-49231950 | None:intergenic | 45.0% | |
TCCGAGATGTGATTTGATGC+AGG | - | chr4.4:49232610-49232629 | MS.gene88234:CDS | 45.0% | |
TGGAACTCCTGGAAATCCAT+TGG | - | chr4.4:49232321-49232340 | MS.gene88234:CDS | 45.0% | |
TTGGATGGCACAACCATTTG+TGG | + | chr4.4:49232478-49232497 | None:intergenic | 45.0% | |
!! | TTTCTTTCTGAAGCAGGACC+AGG | + | chr4.4:49232394-49232413 | None:intergenic | 45.0% |
AATGGCGACGCCGATGAAAT+TGG | - | chr4.4:49232235-49232254 | MS.gene88234:CDS | 50.0% | |
CTAAAAGAACCGGACGAAGG+AGG | + | chr4.4:49231932-49231951 | None:intergenic | 50.0% | |
GACCTAAAAGAACCGGACGA+AGG | + | chr4.4:49231935-49231954 | None:intergenic | 50.0% | |
GAGGAAAGACATGGAACTCC+TGG | - | chr4.4:49232310-49232329 | MS.gene88234:CDS | 50.0% | |
! | CTCCTTCGTCCGGTTCTTTT+AGG | - | chr4.4:49231930-49231949 | MS.gene88234:CDS | 50.0% |
!! | GAGACAGGTTGGCCTTCAAA+TGG | - | chr4.4:49232217-49232236 | MS.gene88234:CDS | 50.0% |
TCATCGGCGTCGCCATTTGA+AGG | + | chr4.4:49232232-49232251 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 49231332 | 49232848 | 49231332 | ID=MS.gene88234 |
chr4.4 | mRNA | 49231332 | 49232848 | 49231332 | ID=MS.gene88234.t1;Parent=MS.gene88234 |
chr4.4 | exon | 49232794 | 49232848 | 49232794 | ID=MS.gene88234.t1.exon1;Parent=MS.gene88234.t1 |
chr4.4 | CDS | 49232794 | 49232848 | 49232794 | ID=cds.MS.gene88234.t1;Parent=MS.gene88234.t1 |
chr4.4 | exon | 49231676 | 49232703 | 49231676 | ID=MS.gene88234.t1.exon2;Parent=MS.gene88234.t1 |
chr4.4 | CDS | 49231676 | 49232703 | 49231676 | ID=cds.MS.gene88234.t1;Parent=MS.gene88234.t1 |
chr4.4 | exon | 49231332 | 49231403 | 49231332 | ID=MS.gene88234.t1.exon3;Parent=MS.gene88234.t1 |
chr4.4 | CDS | 49231332 | 49231403 | 49231332 | ID=cds.MS.gene88234.t1;Parent=MS.gene88234.t1 |
Gene Sequence |
Protein sequence |