AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene88366

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88366.t1 MTR_2g080260 97.067 341 10 0 1 341 1 341 0.0 696
MS.gene88366.t1 MTR_2g080230 93.842 341 21 0 1 341 1 341 0.0 674
MS.gene88366.t1 MTR_8g464300 68.769 333 103 1 10 341 9 341 5.02e-172 481
MS.gene88366.t1 MTR_4g059630 46.667 285 146 4 41 322 105 386 1.90e-92 281
MS.gene88366.t1 MTR_4g059670 46.875 288 146 4 38 322 112 395 7.07e-92 280
MS.gene88366.t1 MTR_2g021580 41.195 318 154 8 33 341 38 331 3.96e-80 248
MS.gene88366.t1 MTR_2g030835 41.195 318 154 8 33 341 37 330 6.20e-79 244
MS.gene88366.t1 MTR_2g030825 40.938 320 156 8 31 341 300 595 5.69e-76 244
MS.gene88366.t1 MTR_2g030845 40.625 320 157 8 31 341 301 596 6.73e-75 242
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene88366.t1 AT5G54370 59.467 338 130 3 7 341 4 337 3.82e-153 434
MS.gene88366.t1 AT1G54890 58.209 335 131 4 16 341 13 347 1.43e-145 415
MS.gene88366.t1 AT4G27400 54.762 336 143 3 13 341 8 341 6.78e-136 390
MS.gene88366.t1 AT5G60530 49.123 285 139 4 34 314 153 435 9.47e-98 296
MS.gene88366.t1 AT5G60520 50.903 277 131 4 34 307 53 327 1.76e-96 290
MS.gene88366.t1 AT3G19430 40.385 312 165 6 34 341 288 582 1.96e-77 248
MS.gene88366.t1 AT3G19430 40.385 312 165 6 34 341 265 559 2.71e-77 247

Find 82 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCCACACCATCATCAATT+TGG 0.212135 2.3:+17447186 MS.gene88366:CDS
ACAGATATTTCAGCAACTTC+TGG 0.256973 2.3:-17447353 None:intergenic
ATTGCCACGCCTGGCTTTGC+CGG 0.261338 2.3:-17447536 None:intergenic
CATCAGGAATCTGATAATTA+TGG 0.264771 2.3:-17447412 None:intergenic
TCCAAGAACTCCTTCAACTT+TGG 0.319801 2.3:-17447486 None:intergenic
GATGTGCAGTTCAAATTCTA+TGG 0.321248 2.3:+17447455 MS.gene88366:CDS
CACGTGGAGAGGTGACCTTC+AGG 0.323310 2.3:-17447263 None:intergenic
TCCAAAGTTGAAGGAGTTCT+TGG 0.337116 2.3:+17447485 MS.gene88366:CDS
TAAAACGAGCATTGATTTGA+AGG 0.375773 2.3:-17447076 None:intergenic
CAGATATTTCAGCAACTTCT+GGG 0.400574 2.3:-17447352 None:intergenic
AGCCACACCATCATCAATTT+GGG 0.401698 2.3:+17447187 MS.gene88366:CDS
TATACTTGGATTCAAGCATT+GGG 0.425530 2.3:+17447131 MS.gene88366:CDS
TGGCCGCGGATCTGCGTGCT+TGG 0.430493 2.3:+17446968 MS.gene88366:CDS
CCTCGTTTCGTTGGTGCGGA+TGG 0.440785 2.3:+17446993 MS.gene88366:CDS
TGAGAAAACAACGGCTCTTA+CGG 0.441610 2.3:-17446420 None:intergenic
GAAGGCATGGATATTGAGTA+TGG 0.445718 2.3:+17447656 MS.gene88366:CDS
ACGAGCATTGATTTGAAGGT+TGG 0.446132 2.3:-17447072 None:intergenic
ACTACTGGCATTGCCACGCC+TGG 0.455683 2.3:-17447545 None:intergenic
TTGGTCTCCCTTGCGGCCTA+AGG 0.460474 2.3:-17447103 None:intergenic
GGAGACCAAGGGATTATACT+TGG 0.461637 2.3:+17447117 MS.gene88366:CDS
GGGTTAGCTGGTGATCTTGA+AGG 0.474099 2.3:-17446469 None:intergenic
ATGGATTCTACTGTCCTCCT+TGG 0.475359 2.3:-17447393 None:intergenic
TTATACTTGGATTCAAGCAT+TGG 0.481860 2.3:+17447130 MS.gene88366:CDS
TGAGCAAAACAATCATCATC+AGG 0.483129 2.3:-17447428 None:intergenic
GGCGTGGCAATGCCAGTAGT+TGG 0.486470 2.3:+17447548 MS.gene88366:CDS
TTTCAAAATCCGGCAAAGCC+AGG 0.488564 2.3:+17447527 MS.gene88366:CDS
GGTCGTAAAGCAAATTGTAA+TGG 0.494042 2.3:+17446948 MS.gene88366:intron
CTACTGTCCTCCTTGGTGAC+AGG 0.494181 2.3:-17447386 None:intergenic
CCTCGGATTGCCACGTGGAG+AGG 0.499460 2.3:-17447274 None:intergenic
AATGCTCATTCCTCCTTCCA+TGG 0.514259 2.3:-17447031 None:intergenic
GGATATTGAGTATGGTATGA+TGG 0.518205 2.3:+17447664 MS.gene88366:CDS
AGATTCAGTGCAGGAAGGCA+TGG 0.525207 2.3:+17447643 MS.gene88366:CDS
CAAGATCACCAGCTAACCCT+AGG 0.527643 2.3:+17446473 MS.gene88366:CDS
TGCTTGGACCCTCGTTTCGT+TGG 0.528337 2.3:+17446984 MS.gene88366:CDS
ACGTGGAGAGGTGACCTTCA+GGG 0.531866 2.3:-17447262 None:intergenic
ATCTGAAGATGCAAGGGATG+TGG 0.533450 2.3:-17447591 None:intergenic
TTTATCGGCCTTAGGCCGCA+AGG 0.538998 2.3:+17447095 MS.gene88366:CDS
GGTTTATCGTCCAAAGTTGA+AGG 0.540641 2.3:+17447476 MS.gene88366:CDS
TGAATCCAAGTATAATCCCT+TGG 0.542313 2.3:-17447122 None:intergenic
CGTCATAAGAGAGCTTCAAA+TGG 0.545184 2.3:-17447223 None:intergenic
GTGGCAATGCCAGTAGTTGG+AGG 0.551168 2.3:+17447551 MS.gene88366:CDS
TCATCATCCCAAATTGATGA+TGG 0.552191 2.3:-17447194 None:intergenic
CAAGACAATCTGAAGATGCA+AGG 0.565565 2.3:-17447598 None:intergenic
GGTATGATGGATTGCACTGG+TGG 0.568752 2.3:+17447677 MS.gene88366:CDS
GATCTTGAAGGACATTGAGC+AGG 0.570539 2.3:-17446457 None:intergenic
TGGCAATGCCAGTAGTTGGA+GGG 0.574377 2.3:+17447552 MS.gene88366:CDS
AAAAGTTGTGTGAATCAAAG+AGG 0.574407 2.3:-17447157 None:intergenic
CATTTGAAGCTCTCTTATGA+CGG 0.574479 2.3:+17447224 MS.gene88366:CDS
TTAGGCCGCAAGGGAGACCA+AGG 0.575605 2.3:+17447105 MS.gene88366:CDS
GAAGCTCTCTTATGACGGAA+AGG 0.577165 2.3:+17447229 MS.gene88366:CDS
TTCTGCTAGAGATTCAGTGC+AGG 0.583594 2.3:+17447634 MS.gene88366:CDS
GAGGAATGAGCATTTCAGCT+TGG 0.589342 2.3:+17447040 MS.gene88366:CDS
ATCGAATGAGAACGGTGTCA+TGG 0.591031 2.3:+17447322 MS.gene88366:CDS
GGCAATGCCAGTAGTTGGAG+GGG 0.593366 2.3:+17447553 MS.gene88366:CDS
TAATCCCTTGGTCTCCCTTG+CGG 0.596610 2.3:-17447110 None:intergenic
AAAACAACGGCTCTTACGGT+TGG 0.597533 2.3:-17446416 None:intergenic
GGTGGTGCTAGCAGTGGCAA+TGG 0.602514 2.3:+17447695 MS.gene88366:CDS
AAGACAATCTGAAGATGCAA+GGG 0.603290 2.3:-17447597 None:intergenic
AAAGCAAATTGTAATGGCCG+CGG 0.604200 2.3:+17446954 MS.gene88366:CDS
TTATCGGCCTTAGGCCGCAA+GGG 0.605783 2.3:+17447096 MS.gene88366:CDS
CCTCTCCACGTGGCAATCCG+AGG 0.606272 2.3:+17447274 MS.gene88366:CDS
GGTCCAAGCACGCAGATCCG+CGG 0.606584 2.3:-17446971 None:intergenic
GGACCCTCGTTTCGTTGGTG+CGG 0.615729 2.3:+17446989 MS.gene88366:CDS
CCATCCGCACCAACGAAACG+AGG 0.619171 2.3:-17446993 None:intergenic
CAATGTGGTGCCTGTCACCA+AGG 0.622527 2.3:+17447376 MS.gene88366:CDS
ATACTTGGATTCAAGCATTG+GGG 0.623520 2.3:+17447132 MS.gene88366:CDS
TGCACTGGTGGTGCTAGCAG+TGG 0.625033 2.3:+17447689 MS.gene88366:CDS
GAAGGACATTGAGCAGGACA+AGG 0.630142 2.3:-17446451 None:intergenic
AAGGATCTCGTAATCCCTGA+AGG 0.634498 2.3:+17447248 MS.gene88366:CDS
AAGATCACCAGCTAACCCTA+GGG 0.637379 2.3:+17446474 MS.gene88366:CDS
ATCCCAAATTGATGATGGTG+TGG 0.642557 2.3:-17447189 None:intergenic
GCTAGAGATTCAGTGCAGGA+AGG 0.648953 2.3:+17447638 MS.gene88366:CDS
AAATCCGGCAAAGCCAGGCG+TGG 0.649193 2.3:+17447532 MS.gene88366:CDS
GAGAGAACATCGAATGAGAA+CGG 0.650582 2.3:+17447314 MS.gene88366:CDS
TATGGTATGATGGATTGCAC+TGG 0.652916 2.3:+17447674 MS.gene88366:CDS
TACTTGGATTCAAGCATTGG+GGG 0.654990 2.3:+17447133 MS.gene88366:CDS
GTAGTTTCTTGAGAAAACAA+CGG 0.671848 2.3:-17446429 None:intergenic
CTGAAGGTCACCTCTCCACG+TGG 0.671875 2.3:+17447264 MS.gene88366:CDS
CATCCGCACCAACGAAACGA+GGG 0.683977 2.3:-17446992 None:intergenic
TAGGCCGCAAGGGAGACCAA+GGG 0.706685 2.3:+17447106 MS.gene88366:CDS
TGCTGAAATATCTGTCAATG+TGG 0.712131 2.3:+17447361 MS.gene88366:CDS
TGTGGTGCCTGTCACCAAGG+AGG 0.732407 2.3:+17447379 MS.gene88366:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTGTGATAAATTTAATA+AGG + chr2.3:17446611-17446630 MS.gene88366:intron 15.0%
!! AACAAGTGATCATTATATAT+TGG + chr2.3:17446871-17446890 MS.gene88366:intron 20.0%
!! AACAAGTGTTCATTATATAT+TGG + chr2.3:17446916-17446935 MS.gene88366:intron 20.0%
!! ATTATATATTGGATGTGAAT+AGG + chr2.3:17446882-17446901 MS.gene88366:intron 20.0%
!! TGTGATAAATTTAATAAGGT+TGG + chr2.3:17446615-17446634 MS.gene88366:intron 20.0%
!! GAAATAATCCTATTTGAGAT+CGG - chr2.3:17446771-17446790 None:intergenic 25.0%
AAAAGTTGTGTGAATCAAAG+AGG - chr2.3:17447160-17447179 None:intergenic 30.0%
CATCAGGAATCTGATAATTA+TGG - chr2.3:17447415-17447434 None:intergenic 30.0%
GTAGTTTCTTGAGAAAACAA+CGG - chr2.3:17446432-17446451 None:intergenic 30.0%
TATACTTGGATTCAAGCATT+GGG + chr2.3:17447131-17447150 MS.gene88366:CDS 30.0%
TTATACTTGGATTCAAGCAT+TGG + chr2.3:17447130-17447149 MS.gene88366:CDS 30.0%
! CAAATCAATGCTCGTTTTAT+CGG + chr2.3:17447080-17447099 MS.gene88366:CDS 30.0%
! TTGTTTTCTATTTCCATGGA+AGG + chr2.3:17447018-17447037 MS.gene88366:CDS 30.0%
!! TAAAACGAGCATTGATTTGA+AGG - chr2.3:17447079-17447098 None:intergenic 30.0%
!! TGATGATTGTTTTGCTCATT+TGG + chr2.3:17447433-17447452 MS.gene88366:CDS 30.0%
AAAACTAACATGCTCTCACT+AGG - chr2.3:17446641-17446660 None:intergenic 35.0%
AAGACAATCTGAAGATGCAA+GGG - chr2.3:17447600-17447619 None:intergenic 35.0%
ACAGATATTTCAGCAACTTC+TGG - chr2.3:17447356-17447375 None:intergenic 35.0%
ATGTTCTACCGATCTCAAAT+AGG + chr2.3:17446760-17446779 MS.gene88366:intron 35.0%
CAGATATTTCAGCAACTTCT+GGG - chr2.3:17447355-17447374 None:intergenic 35.0%
GATGTGCAGTTCAAATTCTA+TGG + chr2.3:17447455-17447474 MS.gene88366:CDS 35.0%
GGATATTGAGTATGGTATGA+TGG + chr2.3:17447664-17447683 MS.gene88366:CDS 35.0%
GGTCGTAAAGCAAATTGTAA+TGG + chr2.3:17446948-17446967 MS.gene88366:intron 35.0%
TCATCATCCCAAATTGATGA+TGG - chr2.3:17447197-17447216 None:intergenic 35.0%
TGAATCCAAGTATAATCCCT+TGG - chr2.3:17447125-17447144 None:intergenic 35.0%
TGAGCAAAACAATCATCATC+AGG - chr2.3:17447431-17447450 None:intergenic 35.0%
TGCTGAAATATCTGTCAATG+TGG + chr2.3:17447361-17447380 MS.gene88366:CDS 35.0%
! ATACTTGGATTCAAGCATTG+GGG + chr2.3:17447132-17447151 MS.gene88366:CDS 35.0%
! CATTTGAAGCTCTCTTATGA+CGG + chr2.3:17447224-17447243 MS.gene88366:CDS 35.0%
! GGCATTGTTTTCTATTTCCA+TGG + chr2.3:17447014-17447033 MS.gene88366:CDS 35.0%
! TCAGCCAGATTTTCAAAATC+CGG + chr2.3:17447517-17447536 MS.gene88366:CDS 35.0%
! TTTTCTATTTCCATGGAAGG+AGG + chr2.3:17447021-17447040 MS.gene88366:CDS 35.0%
!! AGATAGCAAACTTTTTCCCT+AGG - chr2.3:17446493-17446512 None:intergenic 35.0%
!! GATAGCAAACTTTTTCCCTA+GGG - chr2.3:17446492-17446511 None:intergenic 35.0%
!! TTTGCCGGATTTTGAAAATC+TGG - chr2.3:17447524-17447543 None:intergenic 35.0%
!!! GACTCTAAGTTGATTTTCCT+CGG - chr2.3:17447294-17447313 None:intergenic 35.0%
!!! GCATGTTAGTTTTGCAAATG+TGG + chr2.3:17446648-17446667 MS.gene88366:intron 35.0%
AAAGCAAATTGTAATGGCCG+CGG + chr2.3:17446954-17446973 MS.gene88366:CDS 40.0%
AAATCAAACGAGAGACCTCT+CGG - chr2.3:17446699-17446718 None:intergenic 40.0%
AAGCCACACCATCATCAATT+TGG + chr2.3:17447186-17447205 MS.gene88366:CDS 40.0%
AGCCACACCATCATCAATTT+GGG + chr2.3:17447187-17447206 MS.gene88366:CDS 40.0%
CAAGACAATCTGAAGATGCA+AGG - chr2.3:17447601-17447620 None:intergenic 40.0%
CGTCATAAGAGAGCTTCAAA+TGG - chr2.3:17447226-17447245 None:intergenic 40.0%
GAGAGAACATCGAATGAGAA+CGG + chr2.3:17447314-17447333 MS.gene88366:CDS 40.0%
GGTTTATCGTCCAAAGTTGA+AGG + chr2.3:17447476-17447495 MS.gene88366:CDS 40.0%
TCCAAAGTTGAAGGAGTTCT+TGG + chr2.3:17447485-17447504 MS.gene88366:CDS 40.0%
TCCAAGAACTCCTTCAACTT+TGG - chr2.3:17447489-17447508 None:intergenic 40.0%
TGAGAAAACAACGGCTCTTA+CGG - chr2.3:17446423-17446442 None:intergenic 40.0%
! GAAGGCATGGATATTGAGTA+TGG + chr2.3:17447656-17447675 MS.gene88366:CDS 40.0%
! TTGCACTGAGTTTTGCACAT+AGG - chr2.3:17446529-17446548 None:intergenic 40.0%
!! ACGAGCATTGATTTGAAGGT+TGG - chr2.3:17447075-17447094 None:intergenic 40.0%
!! ATCCCAAATTGATGATGGTG+TGG - chr2.3:17447192-17447211 None:intergenic 40.0%
!! TACTTGGATTCAAGCATTGG+GGG + chr2.3:17447133-17447152 MS.gene88366:CDS 40.0%
!! TATGGTATGATGGATTGCAC+TGG + chr2.3:17447674-17447693 MS.gene88366:CDS 40.0%
AAAACAACGGCTCTTACGGT+TGG - chr2.3:17446419-17446438 None:intergenic 45.0%
AAGATCACCAGCTAACCCTA+GGG + chr2.3:17446474-17446493 MS.gene88366:CDS 45.0%
AAGGATCTCGTAATCCCTGA+AGG + chr2.3:17447248-17447267 MS.gene88366:CDS 45.0%
AATGCTCATTCCTCCTTCCA+TGG - chr2.3:17447034-17447053 None:intergenic 45.0%
ATCTGAAGATGCAAGGGATG+TGG - chr2.3:17447594-17447613 None:intergenic 45.0%
ATGGATTCTACTGTCCTCCT+TGG - chr2.3:17447396-17447415 None:intergenic 45.0%
CAAAGATACTCGTTACCGAG+AGG + chr2.3:17446681-17446700 MS.gene88366:intron 45.0%
GAGGAATGAGCATTTCAGCT+TGG + chr2.3:17447040-17447059 MS.gene88366:CDS 45.0%
GATCTTGAAGGACATTGAGC+AGG - chr2.3:17446460-17446479 None:intergenic 45.0%
GGAGACCAAGGGATTATACT+TGG + chr2.3:17447117-17447136 MS.gene88366:CDS 45.0%
TTCTGCTAGAGATTCAGTGC+AGG + chr2.3:17447634-17447653 MS.gene88366:CDS 45.0%
TTTCAAAATCCGGCAAAGCC+AGG + chr2.3:17447527-17447546 MS.gene88366:CDS 45.0%
! ATCGAATGAGAACGGTGTCA+TGG + chr2.3:17447322-17447341 MS.gene88366:CDS 45.0%
! ATGCTCGTTTTATCGGCCTT+AGG + chr2.3:17447087-17447106 MS.gene88366:CDS 45.0%
! GAAGCTCTCTTATGACGGAA+AGG + chr2.3:17447229-17447248 MS.gene88366:CDS 45.0%
! TTGTTTTCCCCTCCAACTAC+TGG - chr2.3:17447563-17447582 None:intergenic 45.0%
!! ACTTTTTCCCTAGGGTTAGC+TGG - chr2.3:17446484-17446503 None:intergenic 45.0%
AGATTCAGTGCAGGAAGGCA+TGG + chr2.3:17447643-17447662 MS.gene88366:CDS 50.0%
CAAGATCACCAGCTAACCCT+AGG + chr2.3:17446473-17446492 MS.gene88366:CDS 50.0%
GAAGGACATTGAGCAGGACA+AGG - chr2.3:17446454-17446473 None:intergenic 50.0%
GCTAGAGATTCAGTGCAGGA+AGG + chr2.3:17447638-17447657 MS.gene88366:CDS 50.0%
TAATCCCTTGGTCTCCCTTG+CGG - chr2.3:17447113-17447132 None:intergenic 50.0%
TGGCAATGCCAGTAGTTGGA+GGG + chr2.3:17447552-17447571 MS.gene88366:CDS 50.0%
! ATTTTCCTCGGATTGCCACG+TGG - chr2.3:17447282-17447301 None:intergenic 50.0%
!! GGGTTAGCTGGTGATCTTGA+AGG - chr2.3:17446472-17446491 None:intergenic 50.0%
!! GGTATGATGGATTGCACTGG+TGG + chr2.3:17447677-17447696 MS.gene88366:CDS 50.0%
ACGTGGAGAGGTGACCTTCA+GGG - chr2.3:17447265-17447284 None:intergenic 55.0%
CAATGTGGTGCCTGTCACCA+AGG + chr2.3:17447376-17447395 MS.gene88366:CDS 55.0%
CATCCGCACCAACGAAACGA+GGG - chr2.3:17446995-17447014 None:intergenic 55.0%
GGCAATGCCAGTAGTTGGAG+GGG + chr2.3:17447553-17447572 MS.gene88366:CDS 55.0%
GTGGCAATGCCAGTAGTTGG+AGG + chr2.3:17447551-17447570 MS.gene88366:CDS 55.0%
TGCTTGGACCCTCGTTTCGT+TGG + chr2.3:17446984-17447003 MS.gene88366:CDS 55.0%
TTATCGGCCTTAGGCCGCAA+GGG + chr2.3:17447096-17447115 MS.gene88366:CDS 55.0%
TTTATCGGCCTTAGGCCGCA+AGG + chr2.3:17447095-17447114 MS.gene88366:CDS 55.0%
! CTACTGTCCTCCTTGGTGAC+AGG - chr2.3:17447389-17447408 None:intergenic 55.0%
AAATCCGGCAAAGCCAGGCG+TGG + chr2.3:17447532-17447551 MS.gene88366:CDS 60.0%
ACTACTGGCATTGCCACGCC+TGG - chr2.3:17447548-17447567 None:intergenic 60.0%
CACGTGGAGAGGTGACCTTC+AGG - chr2.3:17447266-17447285 None:intergenic 60.0%
CCATCCGCACCAACGAAACG+AGG - chr2.3:17446996-17447015 None:intergenic 60.0%
CCTCGTTTCGTTGGTGCGGA+TGG + chr2.3:17446993-17447012 MS.gene88366:CDS 60.0%
CTGAAGGTCACCTCTCCACG+TGG + chr2.3:17447264-17447283 MS.gene88366:CDS 60.0%
GGACCCTCGTTTCGTTGGTG+CGG + chr2.3:17446989-17447008 MS.gene88366:CDS 60.0%
GGCGTGGCAATGCCAGTAGT+TGG + chr2.3:17447548-17447567 MS.gene88366:CDS 60.0%
TAGGCCGCAAGGGAGACCAA+GGG + chr2.3:17447106-17447125 MS.gene88366:CDS 60.0%
TGTGGTGCCTGTCACCAAGG+AGG + chr2.3:17447379-17447398 MS.gene88366:CDS 60.0%
TTAGGCCGCAAGGGAGACCA+AGG + chr2.3:17447105-17447124 MS.gene88366:CDS 60.0%
TTGGTCTCCCTTGCGGCCTA+AGG - chr2.3:17447106-17447125 None:intergenic 60.0%
! GGTGGTGCTAGCAGTGGCAA+TGG + chr2.3:17447695-17447714 MS.gene88366:CDS 60.0%
! TGCACTGGTGGTGCTAGCAG+TGG + chr2.3:17447689-17447708 MS.gene88366:CDS 60.0%
!! ATTGCCACGCCTGGCTTTGC+CGG - chr2.3:17447539-17447558 None:intergenic 60.0%
CCTCGGATTGCCACGTGGAG+AGG - chr2.3:17447277-17447296 None:intergenic 65.0%
CCTCTCCACGTGGCAATCCG+AGG + chr2.3:17447274-17447293 MS.gene88366:CDS 65.0%
GGTCCAAGCACGCAGATCCG+CGG - chr2.3:17446974-17446993 None:intergenic 65.0%
TGGCCGCGGATCTGCGTGCT+TGG + chr2.3:17446968-17446987 MS.gene88366:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 17446313 17447736 17446313 ID=MS.gene88366
chr2.3 mRNA 17446313 17447736 17446313 ID=MS.gene88366.t1;Parent=MS.gene88366
chr2.3 exon 17446313 17446550 17446313 ID=MS.gene88366.t1.exon1;Parent=MS.gene88366.t1
chr2.3 CDS 17446313 17446550 17446313 ID=cds.MS.gene88366.t1;Parent=MS.gene88366.t1
chr2.3 exon 17446949 17447736 17446949 ID=MS.gene88366.t1.exon2;Parent=MS.gene88366.t1
chr2.3 CDS 17446949 17447736 17446949 ID=cds.MS.gene88366.t1;Parent=MS.gene88366.t1
Gene Sequence

>MS.gene88366

ATGGATTTCTCAAGCAACAACAAATGCTTAATGTTTGTTTTGTGTTTATTTGTTTTTGTATCTTCATGTGTGATGTGTGTTAATGTTGATACTCAAACATGTACCAACCGTAAGAGCCGTTGTTTTCTCAAGAAACTACCTTGTCCTGCTCAATGTCCTTCAAGATCACCAGCTAACCCTAGGGAAAAAGTTTGCTATCTTGATTGTGATTCTCCTATGTGCAAAACTCAGTGCAAAAGTAAGACTATTTATATTCAATAGTTGATGCATTTGCATATATATTATTTCGTTTAGCGTTTTCTTGTGATAAATTTAATAAGGTTGGCCTAGTGAGAGCATGTTAGTTTTGCAAATGTGGAGAATATATACAAAGATACTCGTTACCGAGAGGTCTCTCGTTTGATTTCTTGTGAAAAATAAATTTCATTAAAAATGATCTTATCTTTAATGTTCTACCGATCTCAAATAGGATTATTTCTGATATGAAACGTGTGAATTTCGTAAAAGAAAATCACATTGTTTTGTGATTCTATTTTTCTTTTGTTTATAATGTGACATAACAAGTGATCATTATATATTGGATGTGAATATATAATGCGATATAACAAGTGTTCATTATATATTGGATGTGAATAGGTCGTAAAGCAAATTGTAATGGCCGCGGATCTGCGTGCTTGGACCCTCGTTTCGTTGGTGCGGATGGCATTGTTTTCTATTTCCATGGAAGGAGGAATGAGCATTTCAGCTTGGTATCTGACACCAACCTTCAAATCAATGCTCGTTTTATCGGCCTTAGGCCGCAAGGGAGACCAAGGGATTATACTTGGATTCAAGCATTGGGGGTCCTCTTTGATTCACACAACTTTTCTATTGAAGCCACACCATCATCAATTTGGGATGATGAAGTTGACCATTTGAAGCTCTCTTATGACGGAAAGGATCTCGTAATCCCTGAAGGTCACCTCTCCACGTGGCAATCCGAGGAAAATCAACTTAGAGTCGAGAGAACATCGAATGAGAACGGTGTCATGGTTACAATCCCAGAAGTTGCTGAAATATCTGTCAATGTGGTGCCTGTCACCAAGGAGGACAGTAGAATCCATAATTATCAGATTCCTGATGATGATTGTTTTGCTCATTTGGATGTGCAGTTCAAATTCTATGGTTTATCGTCCAAAGTTGAAGGAGTTCTTGGAAGAACTTATCAGCCAGATTTTCAAAATCCGGCAAAGCCAGGCGTGGCAATGCCAGTAGTTGGAGGGGAAAACAAGTATAGAACCACATCCCTTGCATCTTCAGATTGTCTTGCTTGTATATTCTCTTCTGCTAGAGATTCAGTGCAGGAAGGCATGGATATTGAGTATGGTATGATGGATTGCACTGGTGGTGCTAGCAGTGGCAATGGTATAGTTTGCAGAAGATAA
Protein sequence

>MS.gene88366.t1

MDFSSNNKCLMFVLCLFVFVSSCVMCVNVDTQTCTNRKSRCFLKKLPCPAQCPSRSPANPREKVCYLDCDSPMCKTQCKSRKANCNGRGSACLDPRFVGADGIVFYFHGRRNEHFSLVSDTNLQINARFIGLRPQGRPRDYTWIQALGVLFDSHNFSIEATPSSIWDDEVDHLKLSYDGKDLVIPEGHLSTWQSEENQLRVERTSNENGVMVTIPEVAEISVNVVPVTKEDSRIHNYQIPDDDCFAHLDVQFKFYGLSSKVEGVLGRTYQPDFQNPAKPGVAMPVVGGENKYRTTSLASSDCLACIFSSARDSVQEGMDIEYGMMDCTGGASSGNGIVCRR