Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88704.t1 | XP_013441801.1 | 100 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 1.90E-39 | 171.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88704.t1 | A0A072TF43 | 100.0 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 1.3e-39 | 171.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050320 | MS.gene88704 | 0.81248 | 4.15E-51 | -1.69E-46 |
| MS.gene051756 | MS.gene88704 | 0.800087 | 1.70E-48 | -1.69E-46 |
| MS.gene051903 | MS.gene88704 | 0.831717 | 1.42E-55 | -1.69E-46 |
| MS.gene052818 | MS.gene88704 | -0.805487 | 1.30E-49 | -1.69E-46 |
| MS.gene053109 | MS.gene88704 | 0.800489 | 1.41E-48 | -1.69E-46 |
| MS.gene056986 | MS.gene88704 | 0.807704 | 4.44E-50 | -1.69E-46 |
| MS.gene057094 | MS.gene88704 | 0.809234 | 2.09E-50 | -1.69E-46 |
| MS.gene057999 | MS.gene88704 | 0.813667 | 2.28E-51 | -1.69E-46 |
| MS.gene058238 | MS.gene88704 | 0.821201 | 4.58E-53 | -1.69E-46 |
| MS.gene06011 | MS.gene88704 | 0.837787 | 4.23E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88704.t1 | MTR_0512s0010 | 100.000 | 88 | 0 | 0 | 1 | 88 | 1 | 88 | 2.07e-60 | 179 |
| MS.gene88704.t1 | MTR_4g101060 | 80.822 | 73 | 14 | 0 | 1 | 73 | 1 | 73 | 1.09e-35 | 115 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88704.t1 | AT3G52040 | 67.470 | 83 | 25 | 1 | 1 | 81 | 1 | 83 | 8.13e-35 | 114 |
Find 14 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTGATTTCTTCTTAGTT+TGG | 0.339268 | 5.4:+53993751 | None:intergenic |
| AACGAAAGTTACAAAGGATA+TGG | 0.347960 | 5.4:-53993601 | MS.gene88704:CDS |
| AATTTACCTTTGCGAGTTTG+AGG | 0.415610 | 5.4:+53993705 | None:intergenic |
| ATATCCTTTGTAACTTTCGT+TGG | 0.460250 | 5.4:+53993603 | None:intergenic |
| CTGCTTTAACTTCATTGCAA+TGG | 0.502414 | 5.4:+53990382 | None:intergenic |
| TCTGCACCACTTGCAGACTC+TGG | 0.508695 | 5.4:+53990309 | None:intergenic |
| ACTTTGCCATGACGATTAGC+AGG | 0.529511 | 5.4:+53993729 | None:intergenic |
| TCAATTCCTGCTAATCGTCA+TGG | 0.560841 | 5.4:-53993735 | MS.gene88704:CDS |
| AAAGTACCTCAAACTCGCAA+AGG | 0.619602 | 5.4:-53993711 | MS.gene88704:intron |
| GCGACTGTAGCTACAAAGGA+CGG | 0.622949 | 5.4:-53990360 | MS.gene88704:CDS |
| AGCAGCGACTGTAGCTACAA+AGG | 0.651640 | 5.4:-53990364 | MS.gene88704:CDS |
| ACAGCACCAGAGTCTGCAAG+TGG | 0.658489 | 5.4:-53990315 | MS.gene88704:CDS |
| GAAGCCAACGAAAGTTACAA+AGG | 0.673022 | 5.4:-53993607 | MS.gene88704:CDS |
| ACTGTAGCTACAAAGGACGG+TGG | 0.767361 | 5.4:-53990357 | MS.gene88704:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAACAAAAAAATAAATAA+TGG | + | chr5.4:53990409-53990428 | None:intergenic | 10.0% |
| !!! | ATAATTATCTAATTTGAAAT+TGG | - | chr5.4:53991166-53991185 | MS.gene88704:intron | 10.0% |
| !! | AAAATGAAAACAAACAATAT+TGG | - | chr5.4:53992122-53992141 | MS.gene88704:intron | 15.0% |
| !! | AACTTTATTCTCTTAAAATT+TGG | + | chr5.4:53992338-53992357 | None:intergenic | 15.0% |
| !! | AATACTAATTATAGAGAAAT+AGG | - | chr5.4:53991396-53991415 | MS.gene88704:intron | 15.0% |
| !! | TATATTAACAGTTTAAACAA+TGG | - | chr5.4:53991256-53991275 | MS.gene88704:intron | 15.0% |
| !!! | TATCATAACATTTTAAATTG+TGG | - | chr5.4:53991760-53991779 | MS.gene88704:intron | 15.0% |
| !!! | TTAATTTTCAGTTATGATTT+GGG | - | chr5.4:53990580-53990599 | MS.gene88704:intron | 15.0% |
| !!! | TTCTCTATAATTAGTATTTT+TGG | + | chr5.4:53991394-53991413 | None:intergenic | 15.0% |
| !!! | TTTAATTTTCAGTTATGATT+TGG | - | chr5.4:53990579-53990598 | MS.gene88704:intron | 15.0% |
| !!! | TTTAGTTAGTATTTTTTGTA+TGG | - | chr5.4:53992773-53992792 | MS.gene88704:intron | 15.0% |
| !! | ACAACATTATATATTGTGAA+TGG | - | chr5.4:53992234-53992253 | MS.gene88704:intron | 20.0% |
| !! | CAACATTATATATTGTGAAT+GGG | - | chr5.4:53992235-53992254 | MS.gene88704:intron | 20.0% |
| !! | CTGTTAATATACATTATCAT+AGG | + | chr5.4:53991247-53991266 | None:intergenic | 20.0% |
| !! | GGAATAAAGAGTTAATTTAA+TGG | + | chr5.4:53991930-53991949 | None:intergenic | 20.0% |
| !! | GTATATCCAACAAAATTTAA+GGG | + | chr5.4:53991951-53991970 | None:intergenic | 20.0% |
| !! | TAGTTTAAACAATGTTTACT+AGG | - | chr5.4:53993184-53993203 | MS.gene88704:intron | 20.0% |
| !! | TGATTAAAAATATTCAAGCA+AGG | - | chr5.4:53991639-53991658 | MS.gene88704:intron | 20.0% |
| !! | TGTATATCCAACAAAATTTA+AGG | + | chr5.4:53991952-53991971 | None:intergenic | 20.0% |
| !!! | ACTCTATTGTTTTATTATCT+AGG | + | chr5.4:53992538-53992557 | None:intergenic | 20.0% |
| !!! | ATATTGACTTAACTCTTTTT+TGG | - | chr5.4:53991289-53991308 | MS.gene88704:intron | 20.0% |
| !!! | ATTGTGTAAATGATTTTTCA+CGG | + | chr5.4:53991596-53991615 | None:intergenic | 20.0% |
| !!! | CTAATTTGAAATTGGTTTTT+GGG | - | chr5.4:53991174-53991193 | MS.gene88704:intron | 20.0% |
| !!! | CTTGAATATTTTTAATCAAG+TGG | + | chr5.4:53991637-53991656 | None:intergenic | 20.0% |
| !!! | TAAATTTTGTTGGATATACA+AGG | - | chr5.4:53991952-53991971 | MS.gene88704:intron | 20.0% |
| !!! | TATGAAGTATGAACTTTTTA+AGG | + | chr5.4:53991907-53991926 | None:intergenic | 20.0% |
| !!! | TATTGACTTAACTCTTTTTT+GGG | - | chr5.4:53991290-53991309 | MS.gene88704:intron | 20.0% |
| !!! | TCTAATTTGAAATTGGTTTT+TGG | - | chr5.4:53991173-53991192 | MS.gene88704:intron | 20.0% |
| !!! | TTTATTCCCTTAAATTTTGT+TGG | - | chr5.4:53991942-53991961 | MS.gene88704:intron | 20.0% |
| !!! | TTTCATAAGGTTTTAAATCA+CGG | + | chr5.4:53992466-53992485 | None:intergenic | 20.0% |
| ! | AAAATAGTTGTACAATGCTT+AGG | + | chr5.4:53993429-53993448 | None:intergenic | 25.0% |
| ! | AAAGCTAAGAAATGTGTTTA+TGG | - | chr5.4:53991718-53991737 | MS.gene88704:intron | 25.0% |
| ! | ACAAGGACTACATAAAATTT+AGG | + | chr5.4:53993500-53993519 | None:intergenic | 25.0% |
| ! | AGAATAAAGTTTCAATCCAA+TGG | - | chr5.4:53992347-53992366 | MS.gene88704:intron | 25.0% |
| ! | CAAAGTAAAACAAGAAAGTA+TGG | - | chr5.4:53990925-53990944 | MS.gene88704:intron | 25.0% |
| ! | GAAAATTAGAGAAAAGCAAA+AGG | + | chr5.4:53990525-53990544 | None:intergenic | 25.0% |
| ! | TAGGTTCATTGAATAATATC+TGG | - | chr5.4:53993348-53993367 | MS.gene88704:intron | 25.0% |
| ! | TATCTTATAGGACTTGATTA+GGG | + | chr5.4:53990869-53990888 | None:intergenic | 25.0% |
| ! | TTATCTTATAGGACTTGATT+AGG | + | chr5.4:53990870-53990889 | None:intergenic | 25.0% |
| ! | TTATGCTAGTAAATAACCTT+AGG | - | chr5.4:53993023-53993042 | MS.gene88704:intron | 25.0% |
| ! | TTGATAAGCACTTATCTTAT+AGG | + | chr5.4:53990881-53990900 | None:intergenic | 25.0% |
| !! | AAGCTATAAACTGTTTTCAT+CGG | - | chr5.4:53990965-53990984 | MS.gene88704:intron | 25.0% |
| !! | ACAATTTTCTGATCTTTACA+GGG | - | chr5.4:53990441-53990460 | MS.gene88704:intron | 25.0% |
| !! | ATCATCAACATGTTTTCATA+AGG | + | chr5.4:53993457-53993476 | None:intergenic | 25.0% |
| !! | CAGAAATCAAAACTTTTCAA+GGG | - | chr5.4:53990308-53990327 | MS.gene88704:CDS | 25.0% |
| !! | GAATTGATTTCTTCTTAGTT+TGG | + | chr5.4:53990334-53990353 | None:intergenic | 25.0% |
| !! | TAAATTTTATGTAGTCCTTG+TGG | - | chr5.4:53993499-53993518 | MS.gene88704:intron | 25.0% |
| !! | TTTTTAACACTTCATACCAT+TGG | + | chr5.4:53992366-53992385 | None:intergenic | 25.0% |
| !!! | AATTTGTAGTGTGTTTTTTG+TGG | - | chr5.4:53990551-53990570 | MS.gene88704:intron | 25.0% |
| !!! | ATTGACTTAACTCTTTTTTG+GGG | - | chr5.4:53991291-53991310 | MS.gene88704:intron | 25.0% |
| !!! | CATACTTTCTTGTTTTACTT+TGG | + | chr5.4:53990927-53990946 | None:intergenic | 25.0% |
| !!! | TGGCTTTACTCTTTTTTTTT+GGG | - | chr5.4:53993272-53993291 | MS.gene88704:intron | 25.0% |
| !!! | TTGGCTTTACTCTTTTTTTT+TGG | - | chr5.4:53993271-53993290 | MS.gene88704:intron | 25.0% |
| !!! | TTTTTTTTGGGCTTATCTTA+TGG | - | chr5.4:53993284-53993303 | MS.gene88704:intron | 25.0% |
| AACAGTTTAAACAATGGTTG+AGG | - | chr5.4:53991262-53991281 | MS.gene88704:intron | 30.0% | |
| AACGAAAGTTACAAAGGATA+TGG | - | chr5.4:53990481-53990500 | MS.gene88704:intron | 30.0% | |
| ACGGGTATACAAATTTCATA+AGG | + | chr5.4:53992479-53992498 | None:intergenic | 30.0% | |
| ATATCCTTTGTAACTTTCGT+TGG | + | chr5.4:53990482-53990501 | None:intergenic | 30.0% | |
| CCTTGAAATTTAGTAACACA+TGG | - | chr5.4:53992743-53992762 | MS.gene88704:intron | 30.0% | |
| GCTCATGAATAATTTACCTA+AGG | + | chr5.4:53991104-53991123 | None:intergenic | 30.0% | |
| GTTCTATGAATCTCAGAATT+TGG | + | chr5.4:53991441-53991460 | None:intergenic | 30.0% | |
| TGCTTATAATAGTGACCAAA+GGG | - | chr5.4:53993396-53993415 | MS.gene88704:intron | 30.0% | |
| TTATGGCAGTAAATAACCTT+AGG | - | chr5.4:53991085-53991104 | MS.gene88704:intron | 30.0% | |
| TTGCTTATAATAGTGACCAA+AGG | - | chr5.4:53993395-53993414 | MS.gene88704:intron | 30.0% | |
| TTTCATAAGCTCAATCCAAA+CGG | + | chr5.4:53990669-53990688 | None:intergenic | 30.0% | |
| ! | AAAGTATTCATGTTTCTGCT+TGG | - | chr5.4:53990626-53990645 | MS.gene88704:intron | 30.0% |
| ! | AATGTGTTTATGGACTGTTA+CGG | - | chr5.4:53991728-53991747 | MS.gene88704:intron | 30.0% |
| ! | AATTTTCTTGTTGCAGAACT+TGG | + | chr5.4:53992293-53992312 | None:intergenic | 30.0% |
| ! | ACAGTTTTCATAGGCTATTT+TGG | - | chr5.4:53992923-53992942 | MS.gene88704:intron | 30.0% |
| ! | ATTAGCAAAACACGCATTTT+AGG | - | chr5.4:53993329-53993348 | MS.gene88704:intron | 30.0% |
| ! | ATTTTCTTGTTGCAGAACTT+GGG | + | chr5.4:53992292-53992311 | None:intergenic | 30.0% |
| ! | CACAATTTTCTGATCTTTAC+AGG | - | chr5.4:53990440-53990459 | MS.gene88704:intron | 30.0% |
| ! | CCATGTGTTACTAAATTTCA+AGG | + | chr5.4:53992746-53992765 | None:intergenic | 30.0% |
| ! | GAGCTATAAACAGTTTTCAT+AGG | - | chr5.4:53992914-53992933 | MS.gene88704:intron | 30.0% |
| ! | GCACTGATGAAAAATGTTAA+TGG | + | chr5.4:53992193-53992212 | None:intergenic | 30.0% |
| ! | GCAGAAATCAAAACTTTTCA+AGG | - | chr5.4:53990307-53990326 | MS.gene88704:CDS | 30.0% |
| ! | GTGTTACTAAATTTCAAGGT+TGG | + | chr5.4:53992742-53992761 | None:intergenic | 30.0% |
| ! | GTTTTGCTAATAATAGTGAC+CGG | + | chr5.4:53993320-53993339 | None:intergenic | 30.0% |
| ! | TACTAAATTTCAAGGTTGGT+AGG | + | chr5.4:53992738-53992757 | None:intergenic | 30.0% |
| ! | TATTTCTAAAAGCTACCACA+AGG | + | chr5.4:53993517-53993536 | None:intergenic | 30.0% |
| ! | TCATATGCAGTGTTTTGTAT+TGG | - | chr5.4:53993252-53993271 | MS.gene88704:intron | 30.0% |
| ! | TGGTCATGATATTTGATGAT+TGG | - | chr5.4:53991780-53991799 | MS.gene88704:intron | 30.0% |
| !! | ACTAAATTTCAAGGTTGGTA+GGG | + | chr5.4:53992737-53992756 | None:intergenic | 30.0% |
| !! | TGTGGTAGCTTTTAGAAATA+AGG | - | chr5.4:53993517-53993536 | MS.gene88704:intron | 30.0% |
| !! | TTCAGTTATGATTTGGGTTT+TGG | - | chr5.4:53990586-53990605 | MS.gene88704:intron | 30.0% |
| !!! | AAGATTTTTCAAGCAAGAAG+CGG | + | chr5.4:53992581-53992600 | None:intergenic | 30.0% |
| AAAGCTGATAGATGTGTGTA+TGG | + | chr5.4:53992508-53992527 | None:intergenic | 35.0% | |
| AACGATTCTTCACGATTGAT+AGG | - | chr5.4:53992645-53992664 | MS.gene88704:intron | 35.0% | |
| AAGACACTAGCAAGAGTTTA+TGG | - | chr5.4:53991068-53991087 | MS.gene88704:intron | 35.0% | |
| AAGCTCTTTCAAACACTGAA+GGG | - | chr5.4:53992999-53993018 | MS.gene88704:intron | 35.0% | |
| AATCAAGTGGTTGCCAAAAA+GGG | + | chr5.4:53991624-53991643 | None:intergenic | 35.0% | |
| AATTTACCTTTGCGAGTTTG+AGG | + | chr5.4:53990380-53990399 | None:intergenic | 35.0% | |
| ACAAGCTTCTGCATTTGAAT+CGG | + | chr5.4:53991126-53991145 | None:intergenic | 35.0% | |
| ACTAATCACTGTGTTCAATC+AGG | + | chr5.4:53992046-53992065 | None:intergenic | 35.0% | |
| AGATTCATAGAACGAAGCTA+AGG | - | chr5.4:53991448-53991467 | MS.gene88704:intron | 35.0% | |
| AGCAAAACAATACTGAGAAG+TGG | + | chr5.4:53992070-53992089 | None:intergenic | 35.0% | |
| ATGTGTGTATGGACAATTAC+GGG | + | chr5.4:53992497-53992516 | None:intergenic | 35.0% | |
| CTGCTTGGATAAACAGATTA+AGG | - | chr5.4:53990641-53990660 | MS.gene88704:intron | 35.0% | |
| GAATCAAGTAGTTGCCAAAA+GGG | - | chr5.4:53992603-53992622 | MS.gene88704:intron | 35.0% | |
| GATGTGTGTATGGACAATTA+CGG | + | chr5.4:53992498-53992517 | None:intergenic | 35.0% | |
| GATTCATAGAACGAAGCTAA+GGG | - | chr5.4:53991449-53991468 | MS.gene88704:intron | 35.0% | |
| GCTCATGAACAATTTACCTA+AGG | + | chr5.4:53993042-53993061 | None:intergenic | 35.0% | |
| GGTTCAATTTCTGTTAAACC+AGG | - | chr5.4:53993658-53993677 | MS.gene88704:intron | 35.0% | |
| TAAGCTCTTTCAAACACTGA+AGG | - | chr5.4:53992998-53993017 | MS.gene88704:intron | 35.0% | |
| TAATCAAGTGGTTGCCAAAA+AGG | + | chr5.4:53991625-53991644 | None:intergenic | 35.0% | |
| TCAATTTCTGTTAAACCAGG+AGG | - | chr5.4:53993661-53993680 | MS.gene88704:intron | 35.0% | |
| TCACCGAATGAAAATACTTG+CGG | - | chr5.4:53992955-53992974 | MS.gene88704:intron | 35.0% | |
| TGAATCAAGTAGTTGCCAAA+AGG | - | chr5.4:53992602-53992621 | MS.gene88704:intron | 35.0% | |
| TGGTGTAAACATCTAAGAAG+TGG | - | chr5.4:53993368-53993387 | MS.gene88704:intron | 35.0% | |
| TTTGTCAACTCGATGAACAT+AGG | + | chr5.4:53993080-53993099 | None:intergenic | 35.0% | |
| ! | ATGCCGCAAGTATTTTCATT+CGG | + | chr5.4:53992961-53992980 | None:intergenic | 35.0% |
| ! | ATGTGTTTATGGACTGTTAC+GGG | - | chr5.4:53991729-53991748 | MS.gene88704:intron | 35.0% |
| ! | CTGCTTTAACTTCATTGCAA+TGG | + | chr5.4:53993703-53993722 | None:intergenic | 35.0% |
| ! | GTAACTTGTAAGCACTTGTA+CGG | - | chr5.4:53991330-53991349 | MS.gene88704:intron | 35.0% |
| ! | TGATTAGGGTCTTTTTGGAT+TGG | + | chr5.4:53990855-53990874 | None:intergenic | 35.0% |
| !! | GCATTGATGAAAAGCGTTAT+TGG | - | chr5.4:53991990-53992009 | MS.gene88704:intron | 35.0% |
| !!! | CTTTTTTGGGGCTTATCTTA+TGG | - | chr5.4:53991303-53991322 | MS.gene88704:intron | 35.0% |
| AAACAGATTAAGGCTCCGTT+TGG | - | chr5.4:53990651-53990670 | MS.gene88704:intron | 40.0% | |
| AAGCAAGGAGAATTGTCACA+TGG | - | chr5.4:53991654-53991673 | MS.gene88704:intron | 40.0% | |
| AATTGTCACATGGGAGTAGA+TGG | - | chr5.4:53991664-53991683 | MS.gene88704:intron | 40.0% | |
| AGATGTTCAACTGATCCTCT+CGG | - | chr5.4:53991570-53991589 | MS.gene88704:intron | 40.0% | |
| AGCAAGGAGAATTGTCACAT+GGG | - | chr5.4:53991655-53991674 | MS.gene88704:intron | 40.0% | |
| AGGATCAGTTGAACATCTGT+CGG | + | chr5.4:53991568-53991587 | None:intergenic | 40.0% | |
| ATATCTGCAGAAGAAGACTG+AGG | - | chr5.4:53991537-53991556 | MS.gene88704:intron | 40.0% | |
| ATCTTATGGCATACATCCTC+CGG | - | chr5.4:53993298-53993317 | MS.gene88704:intron | 40.0% | |
| GAAGCCAACGAAAGTTACAA+AGG | - | chr5.4:53990475-53990494 | MS.gene88704:intron | 40.0% | |
| GAAGCCATTAACACTACAAC+GGG | - | chr5.4:53991355-53991374 | MS.gene88704:intron | 40.0% | |
| GGAAGCCATTAACACTACAA+CGG | - | chr5.4:53991354-53991373 | MS.gene88704:intron | 40.0% | |
| TATCTGCAGAAGAAGACTGA+GGG | - | chr5.4:53991538-53991557 | MS.gene88704:intron | 40.0% | |
| TATGATTACCACTCCTACGA+TGG | + | chr5.4:53992834-53992853 | None:intergenic | 40.0% | |
| TCAATTCCTGCTAATCGTCA+TGG | - | chr5.4:53990347-53990366 | MS.gene88704:CDS | 40.0% | |
| TTAAACCAACCCTCTATGCA+TGG | + | chr5.4:53991490-53991509 | None:intergenic | 40.0% | |
| TTGCTAATAATAGTGACCGG+AGG | + | chr5.4:53993317-53993336 | None:intergenic | 40.0% | |
| TTGGGTTATGCTGAACATGT+TGG | + | chr5.4:53992274-53992293 | None:intergenic | 40.0% | |
| ! | AAAGTACCTCAAACTCGCAA+AGG | - | chr5.4:53990371-53990390 | MS.gene88704:CDS | 40.0% |
| ! | GGACTTGATTAGGGTCTTTT+TGG | + | chr5.4:53990860-53990879 | None:intergenic | 40.0% |
| ! | TAATGAATTTGCTCACCTCC+TGG | + | chr5.4:53993679-53993698 | None:intergenic | 40.0% |
| ! | TACACAATACGCACCCTTTT+TGG | - | chr5.4:53991608-53991627 | MS.gene88704:intron | 40.0% |
| !! | GAAGCTAAGGGTTGATTTTG+AGG | - | chr5.4:53991461-53991480 | MS.gene88704:intron | 40.0% |
| !! | TGCATAGAGGGTTGGTTTAA+TGG | - | chr5.4:53991490-53991509 | MS.gene88704:intron | 40.0% |
| AATGTCTTCCATCGTAGGAG+TGG | - | chr5.4:53992823-53992842 | MS.gene88704:intron | 45.0% | |
| ACTTGTAAGCACTTGTACGG+TGG | - | chr5.4:53991333-53991352 | MS.gene88704:intron | 45.0% | |
| ACTTTGCCATGACGATTAGC+AGG | + | chr5.4:53990356-53990375 | None:intergenic | 45.0% | |
| GAAGACATTGACACTGCGAT+GGG | + | chr5.4:53992812-53992831 | None:intergenic | 45.0% | |
| GGATCAGTTGAACATCTGTC+GGG | + | chr5.4:53991567-53991586 | None:intergenic | 45.0% | |
| GTGTCAATGTCTTCCATCGT+AGG | - | chr5.4:53992818-53992837 | MS.gene88704:intron | 45.0% | |
| TCAACTCGATGAACATAGGC+TGG | + | chr5.4:53993076-53993095 | None:intergenic | 45.0% | |
| TCAATGGCTATGGATCAGTG+TGG | + | chr5.4:53992680-53992699 | None:intergenic | 45.0% | |
| TCCTCCCGTTGTAGTGTTAA+TGG | + | chr5.4:53991362-53991381 | None:intergenic | 45.0% | |
| TTGAGGACACCATGCATAGA+GGG | - | chr5.4:53991478-53991497 | MS.gene88704:intron | 45.0% | |
| TTTGAGGACACCATGCATAG+AGG | - | chr5.4:53991477-53991496 | MS.gene88704:intron | 45.0% | |
| ! | AATGATTTTTCACGGCCGAG+AGG | + | chr5.4:53991588-53991607 | None:intergenic | 45.0% |
| ! | ATGGCATTGGATCAGTATCG+AGG | - | chr5.4:53991509-53991528 | MS.gene88704:intron | 45.0% |
| ! | CGATGTTTCTGCAGCTTATG+AGG | - | chr5.4:53993215-53993234 | MS.gene88704:intron | 45.0% |
| !! | GAGGGTTGGTTTAATGGCAT+TGG | - | chr5.4:53991496-53991515 | MS.gene88704:intron | 45.0% |
| !!! | GATTTTAATTTTTTATATTT+GGG | - | chr5.4:53993637-53993656 | MS.gene88704:intron | 5.0% |
| !!! | TGATTTTAATTTTTTATATT+TGG | - | chr5.4:53993636-53993655 | MS.gene88704:intron | 5.0% |
| ACATAGGCTGGCATTAGCGT+TGG | + | chr5.4:53993064-53993083 | None:intergenic | 50.0% | |
| ACTGTAGCTACAAAGGACGG+TGG | - | chr5.4:53993725-53993744 | MS.gene88704:CDS | 50.0% | |
| AGCAGCGACTGTAGCTACAA+AGG | - | chr5.4:53993718-53993737 | MS.gene88704:CDS | 50.0% | |
| AGGGGTGGTTTCAATGGCTA+TGG | + | chr5.4:53992690-53992709 | None:intergenic | 50.0% | |
| GCCATTAACACTACAACGGG+AGG | - | chr5.4:53991358-53991377 | MS.gene88704:intron | 50.0% | |
| GCGACTGTAGCTACAAAGGA+CGG | - | chr5.4:53993722-53993741 | MS.gene88704:CDS | 50.0% | |
| GGAAGACATTGACACTGCGA+TGG | + | chr5.4:53992813-53992832 | None:intergenic | 50.0% | |
| TGCTTAGGAGTGACACCCTT+TGG | + | chr5.4:53993414-53993433 | None:intergenic | 50.0% | |
| ! | GAGCTGATGACACACCCTTT+TGG | + | chr5.4:53992620-53992639 | None:intergenic | 50.0% |
| ! | TCTAGAACACCGTGCACAGA+GGG | + | chr5.4:53992709-53992728 | None:intergenic | 50.0% |
| !! | TTCTAGAACACCGTGCACAG+AGG | + | chr5.4:53992710-53992729 | None:intergenic | 50.0% |
| ACAGCACCAGAGTCTGCAAG+TGG | - | chr5.4:53993767-53993786 | MS.gene88704:CDS | 55.0% | |
| CTAGAACACCGTGCACAGAG+GGG | + | chr5.4:53992708-53992727 | None:intergenic | 55.0% | |
| GACATTGACACTGCGATGGG+AGG | + | chr5.4:53992809-53992828 | None:intergenic | 55.0% | |
| GCACAGAGGGGTGGTTTCAA+TGG | + | chr5.4:53992696-53992715 | None:intergenic | 55.0% | |
| GGACACCATGCATAGAGGGT+TGG | - | chr5.4:53991482-53991501 | MS.gene88704:intron | 55.0% | |
| TCTGCACCACTTGCAGACTC+TGG | + | chr5.4:53993776-53993795 | None:intergenic | 55.0% | |
| TGAAACCACCCCTCTGTGCA+CGG | - | chr5.4:53992697-53992716 | MS.gene88704:intron | 55.0% | |
| !! | AAGCAAGAAGCGGTGTCACG+TGG | + | chr5.4:53992571-53992590 | None:intergenic | 55.0% |
| !! | AGCAAGAAGCGGTGTCACGT+GGG | + | chr5.4:53992570-53992589 | None:intergenic | 55.0% |
| !! | CGGTGTCACGTGGGAGTAGA+TGG | + | chr5.4:53992561-53992580 | None:intergenic | 60.0% |
| GAACACCGTGCACAGAGGGG+TGG | + | chr5.4:53992705-53992724 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 53990302 | 53993802 | 53990302 | ID=MS.gene88704 |
| chr5.4 | mRNA | 53990302 | 53993802 | 53990302 | ID=MS.gene88704.t1;Parent=MS.gene88704 |
| chr5.4 | exon | 53993712 | 53993802 | 53993712 | ID=MS.gene88704.t1.exon1;Parent=MS.gene88704.t1 |
| chr5.4 | CDS | 53993712 | 53993802 | 53993712 | ID=cds.MS.gene88704.t1;Parent=MS.gene88704.t1 |
| chr5.4 | exon | 53993590 | 53993642 | 53993590 | ID=MS.gene88704.t1.exon2;Parent=MS.gene88704.t1 |
| chr5.4 | CDS | 53993590 | 53993642 | 53993590 | ID=cds.MS.gene88704.t1;Parent=MS.gene88704.t1 |
| chr5.4 | exon | 53990302 | 53990424 | 53990302 | ID=MS.gene88704.t1.exon3;Parent=MS.gene88704.t1 |
| chr5.4 | CDS | 53990302 | 53990424 | 53990302 | ID=cds.MS.gene88704.t1;Parent=MS.gene88704.t1 |
| Gene Sequence |
| Protein sequence |
