Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88772.t1 | XP_003615608.1 | 100 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 4.20E-111 | 410.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88772.t1 | Q9LUX9 | 70.8 | 202 | 59 | 0 | 1 | 202 | 1 | 202 | 6.0e-82 | 305.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88772.t1 | G7K6C8 | 100.0 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 3.0e-111 | 410.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051349 | MS.gene88772 | 0.805558 | 1.26E-49 | -1.69E-46 |
| MS.gene052309 | MS.gene88772 | -0.80484 | 1.78E-49 | -1.69E-46 |
| MS.gene054930 | MS.gene88772 | 0.859767 | 3.29E-63 | -1.69E-46 |
| MS.gene055509 | MS.gene88772 | 0.805523 | 1.28E-49 | -1.69E-46 |
| MS.gene059899 | MS.gene88772 | 0.821743 | 3.43E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene88772 | MS.gene28697 | PPI |
| MS.gene88772 | MS.gene40165 | PPI |
| MS.gene88772 | MS.gene028582 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88772.t1 | MTR_5g070030 | 100.000 | 203 | 0 | 0 | 1 | 203 | 1 | 203 | 9.76e-151 | 416 |
| MS.gene88772.t1 | MTR_2g081810 | 69.347 | 199 | 60 | 1 | 4 | 202 | 3 | 200 | 2.71e-102 | 294 |
| MS.gene88772.t1 | MTR_4g091900 | 69.802 | 202 | 60 | 1 | 1 | 202 | 1 | 201 | 3.12e-101 | 291 |
| MS.gene88772.t1 | MTR_8g466030 | 69.347 | 199 | 60 | 1 | 4 | 202 | 3 | 200 | 8.92e-101 | 290 |
| MS.gene88772.t1 | MTR_2g011080 | 65.829 | 199 | 67 | 1 | 4 | 202 | 3 | 200 | 3.94e-95 | 276 |
| MS.gene88772.t1 | MTR_4g091900 | 68.947 | 190 | 58 | 1 | 13 | 202 | 1 | 189 | 2.73e-93 | 270 |
| MS.gene88772.t1 | MTR_4g069250 | 63.959 | 197 | 71 | 0 | 5 | 201 | 52 | 248 | 1.42e-91 | 268 |
| MS.gene88772.t1 | MTR_2g011080 | 64.767 | 193 | 67 | 1 | 10 | 202 | 4 | 195 | 1.91e-90 | 263 |
| MS.gene88772.t1 | MTR_5g019620 | 60.406 | 197 | 78 | 0 | 5 | 201 | 53 | 249 | 1.83e-88 | 260 |
| MS.gene88772.t1 | MTR_2g011080 | 64.667 | 150 | 52 | 1 | 53 | 202 | 1 | 149 | 9.71e-67 | 202 |
| MS.gene88772.t1 | MTR_8g466080 | 68.966 | 116 | 36 | 0 | 87 | 202 | 1 | 116 | 1.98e-53 | 167 |
| MS.gene88772.t1 | MTR_4g091890 | 68.376 | 117 | 33 | 1 | 86 | 202 | 1 | 113 | 2.45e-52 | 164 |
| MS.gene88772.t1 | MTR_8g466110 | 45.600 | 125 | 41 | 4 | 53 | 177 | 1 | 98 | 6.94e-24 | 91.3 |
| MS.gene88772.t1 | MTR_8g466150 | 45.600 | 125 | 41 | 4 | 53 | 177 | 1 | 98 | 6.94e-24 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene88772.t1 | AT5G58800 | 70.792 | 202 | 59 | 0 | 1 | 202 | 1 | 202 | 1.51e-108 | 310 |
| MS.gene88772.t1 | AT5G58800 | 70.792 | 202 | 59 | 0 | 1 | 202 | 1 | 202 | 1.51e-108 | 310 |
| MS.gene88772.t1 | AT5G54500 | 71.859 | 199 | 55 | 1 | 4 | 202 | 3 | 200 | 1.99e-104 | 299 |
| MS.gene88772.t1 | AT4G27270 | 71.357 | 199 | 56 | 1 | 4 | 202 | 3 | 200 | 1.27e-103 | 297 |
| MS.gene88772.t1 | AT4G27270 | 70.000 | 190 | 56 | 1 | 13 | 202 | 1 | 189 | 1.71e-96 | 279 |
| MS.gene88772.t1 | AT4G27270 | 70.000 | 190 | 56 | 1 | 13 | 202 | 1 | 189 | 1.71e-96 | 279 |
| MS.gene88772.t1 | AT4G36750 | 60.406 | 197 | 78 | 0 | 5 | 201 | 74 | 270 | 1.46e-89 | 264 |
| MS.gene88772.t1 | AT5G54500 | 58.500 | 200 | 74 | 3 | 4 | 203 | 3 | 193 | 1.04e-77 | 233 |
| MS.gene88772.t1 | AT4G27270 | 73.333 | 150 | 39 | 1 | 53 | 202 | 1 | 149 | 3.00e-76 | 226 |
Find 62 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCTGATGCTTTGATATT+TGG | 0.205625 | 5.4:+55003321 | MS.gene88772:CDS |
| ATTCGATCCGAAAGAATTTC+AGG | 0.264514 | 5.4:-55003231 | None:intergenic |
| AATTCTTTCGGATCGAATAT+TGG | 0.279333 | 5.4:+55003236 | MS.gene88772:CDS |
| GCAAACCTGCTGGAATCTTC+TGG | 0.309872 | 5.4:+55003433 | MS.gene88772:CDS |
| TTTGAGATGGATGAGGTAAA+AGG | 0.353976 | 5.4:+55003921 | MS.gene88772:CDS |
| GTAAAAGGAGGCTCGGCTTA+TGG | 0.358303 | 5.4:+55003936 | MS.gene88772:CDS |
| AAGGCCTTCTTTGACGCTAC+TGG | 0.365059 | 5.4:+55003381 | MS.gene88772:CDS |
| ATACTCACGCTGAGAGTTCC+TGG | 0.369905 | 5.4:-55003479 | None:intergenic |
| TCAGCTACATCATCTGGTTT+AGG | 0.377031 | 5.4:-55003276 | None:intergenic |
| TTCTGGAGTACTGGATTTAA+CGG | 0.377796 | 5.4:+55003450 | MS.gene88772:CDS |
| TGCAGGTATTACTCATTGTA+TGG | 0.383898 | 5.4:+55003003 | MS.gene88772:intron |
| AATGTATTTACCCTGGTAAA+AGG | 0.394202 | 5.4:-55004018 | None:intergenic |
| ACAGGTACCTGAAATTCTTT+CGG | 0.401906 | 5.4:+55003224 | MS.gene88772:intron |
| GTTCCCCTTGGATACACCTT+TGG | 0.416898 | 5.4:+55003888 | MS.gene88772:CDS |
| TCAGCCTCCACAAGTTGTTC+CGG | 0.417062 | 5.4:-55003306 | None:intergenic |
| TCTGGAGTACTGGATTTAAC+GGG | 0.417125 | 5.4:+55003451 | MS.gene88772:CDS |
| TTAATGTCAGCTACATCATC+TGG | 0.433955 | 5.4:-55003282 | None:intergenic |
| AAGAAGGCCTTGAGCTGGCT+TGG | 0.441508 | 5.4:-55003369 | None:intergenic |
| GGTATGCTTTATGTTCCCCT+TGG | 0.446986 | 5.4:+55003876 | MS.gene88772:CDS |
| GCTGGAATCTTCTGGAGTAC+TGG | 0.455679 | 5.4:+55003441 | MS.gene88772:CDS |
| GGAGGCTCGGCTTATGGCGC+TGG | 0.456356 | 5.4:+55003942 | MS.gene88772:CDS |
| TGACGCTACTGGAGAGTTGT+GGG | 0.458101 | 5.4:+55003392 | MS.gene88772:CDS |
| GCACTCGCAGGCAAACCTGC+TGG | 0.474276 | 5.4:+55003423 | MS.gene88772:CDS |
| TATGGCGCTGGAACTTTCGC+TGG | 0.474798 | 5.4:+55003954 | MS.gene88772:CDS |
| TTGACGCTACTGGAGAGTTG+TGG | 0.476817 | 5.4:+55003391 | MS.gene88772:CDS |
| CTTGGATACACCTTTGGAAG+TGG | 0.482304 | 5.4:+55003894 | MS.gene88772:CDS |
| TCGAATATTGGAAAAGATGA+AGG | 0.496681 | 5.4:+55003248 | MS.gene88772:CDS |
| AAGGTGTTGAAGCAACACTT+TGG | 0.525141 | 5.4:+55003076 | MS.gene88772:CDS |
| TACTGAGCTAGAGCTTCAGC+AGG | 0.532454 | 5.4:+55003995 | MS.gene88772:CDS |
| GCTGGAACTTTCGCTGGAGA+TGG | 0.533057 | 5.4:+55003960 | MS.gene88772:CDS |
| CTCAAACATGCCACTTCCAA+AGG | 0.535164 | 5.4:-55003904 | None:intergenic |
| CGTCAAAGAAGGCCTTGAGC+TGG | 0.538429 | 5.4:-55003374 | None:intergenic |
| CACTTCCAAAGGTGTATCCA+AGG | 0.550034 | 5.4:-55003893 | None:intergenic |
| TGCTGAAGCTCTAGCTCAGT+AGG | 0.555488 | 5.4:-55003993 | None:intergenic |
| GTGTTGAAGCAACACTTTGG+AGG | 0.556934 | 5.4:+55003079 | MS.gene88772:CDS |
| CATTAAGCCGGAACAACTTG+TGG | 0.557154 | 5.4:+55003299 | MS.gene88772:CDS |
| TGGGCGTCTCAAGCACTCGC+AGG | 0.560559 | 5.4:+55003411 | MS.gene88772:CDS |
| GTATGGACATGTGAACACTA+TGG | 0.567651 | 5.4:+55003020 | MS.gene88772:CDS |
| TGGAAGTGGCATGTTTGAGA+TGG | 0.571222 | 5.4:+55003908 | MS.gene88772:CDS |
| CTCTCCAGTAGCGTCAAAGA+AGG | 0.574680 | 5.4:-55003385 | None:intergenic |
| GGATGAGGTAAAAGGAGGCT+CGG | 0.576627 | 5.4:+55003929 | MS.gene88772:CDS |
| CTGGAGTACTGGATTTAACG+GGG | 0.577372 | 5.4:+55003452 | MS.gene88772:CDS |
| ATAACTCAGTTAGCTCATCA+TGG | 0.582402 | 5.4:+55003855 | MS.gene88772:CDS |
| TTTCAGCAATGTATTTACCC+TGG | 0.584614 | 5.4:-55004025 | None:intergenic |
| GCTACATCATCTGGTTTAGG+AGG | 0.591266 | 5.4:-55003273 | None:intergenic |
| TGTTGAAGCAACACTTTGGA+GGG | 0.594022 | 5.4:+55003080 | MS.gene88772:CDS |
| TGATGTAGCTGACATTAAGC+CGG | 0.602082 | 5.4:+55003287 | MS.gene88772:CDS |
| GTACTCCAGAAGATTCCAGC+AGG | 0.603541 | 5.4:-55003438 | None:intergenic |
| TATGATGCCAAGCCAGCTCA+AGG | 0.606898 | 5.4:+55003362 | MS.gene88772:CDS |
| ACTTCCAAAGGTGTATCCAA+GGG | 0.617578 | 5.4:-55003892 | None:intergenic |
| TGGCATGTTTGAGATGGATG+AGG | 0.617807 | 5.4:+55003914 | MS.gene88772:CDS |
| GGCATCATACCAAAACGTGA+AGG | 0.648138 | 5.4:-55003348 | None:intergenic |
| TTAGAAGATGACTATCACCA+AGG | 0.664695 | 5.4:+55002838 | None:intergenic |
| TGGCAAGAGAAGTACACAAG+GGG | 0.666285 | 5.4:+55003040 | MS.gene88772:CDS |
| TGCTTACACAATGTAGACCT+TGG | 0.673794 | 5.4:-55002855 | None:intergenic |
| TAAGCCGGAACAACTTGTGG+AGG | 0.677801 | 5.4:+55003302 | MS.gene88772:CDS |
| GAGATGGATGAGGTAAAAGG+AGG | 0.679998 | 5.4:+55003924 | MS.gene88772:CDS |
| TGGAGTACTGGATTTAACGG+GGG | 0.687704 | 5.4:+55003453 | MS.gene88772:CDS |
| CTTCCAAAGGTGTATCCAAG+GGG | 0.694155 | 5.4:-55003891 | None:intergenic |
| TATGGCAAGAGAAGTACACA+AGG | 0.698554 | 5.4:+55003038 | MS.gene88772:CDS |
| ATGGCAAGAGAAGTACACAA+GGG | 0.726547 | 5.4:+55003039 | MS.gene88772:CDS |
| GGCAAGAGAAGTACACAAGG+GGG | 0.735429 | 5.4:+55003041 | MS.gene88772:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTGTAAAAGAAAATATT+TGG | + | chr5.4:55003142-55003161 | MS.gene88772:intron | 15.0% |
| !! | TAGTTTAATCATAAAATGTT+TGG | + | chr5.4:55003628-55003647 | MS.gene88772:intron | 15.0% |
| !!! | TAGTATTGATCAAATTAAAA+TGG | + | chr5.4:55002924-55002943 | MS.gene88772:intron | 15.0% |
| !!! | TTGGTTTATTTTTTATGTAT+CGG | + | chr5.4:55003647-55003666 | MS.gene88772:intron | 15.0% |
| !! | ACTATTTATAAGATAGATAG+AGG | - | chr5.4:55003514-55003533 | None:intergenic | 20.0% |
| ! | AAGTAAAAAAAAGGGGAAAA+GGG | - | chr5.4:55002895-55002914 | None:intergenic | 25.0% |
| ! | ACATTGTGCAAGTAAAAAAA+AGG | - | chr5.4:55002904-55002923 | None:intergenic | 25.0% |
| ! | ATTGTGCAAGTAAAAAAAAG+GGG | - | chr5.4:55002902-55002921 | None:intergenic | 25.0% |
| ! | CATTGTGCAAGTAAAAAAAA+GGG | - | chr5.4:55002903-55002922 | None:intergenic | 25.0% |
| !! | ATTTGGATTCTTTTGTAGTT+AGG | + | chr5.4:55003159-55003178 | MS.gene88772:intron | 25.0% |
| AATGTATTTACCCTGGTAAA+AGG | - | chr5.4:55004021-55004040 | None:intergenic | 30.0% | |
| AATTCTTTCGGATCGAATAT+TGG | + | chr5.4:55003236-55003255 | MS.gene88772:CDS | 30.0% | |
| AGTAAAAAAAAGGGGAAAAG+GGG | - | chr5.4:55002894-55002913 | None:intergenic | 30.0% | |
| ATAAGATAGATAGAGGTCAA+AGG | - | chr5.4:55003507-55003526 | None:intergenic | 30.0% | |
| CAAGTAAAAAAAAGGGGAAA+AGG | - | chr5.4:55002896-55002915 | None:intergenic | 30.0% | |
| CCAAAAACATAAGACACATA+AGG | - | chr5.4:55003676-55003695 | None:intergenic | 30.0% | |
| GATTTCAGTTTGATGAAAAC+AGG | + | chr5.4:55003206-55003225 | MS.gene88772:intron | 30.0% | |
| GGAAAACAGATTGTGAAATT+CGG | - | chr5.4:55003565-55003584 | None:intergenic | 30.0% | |
| TAAGATAGATAGAGGTCAAA+GGG | - | chr5.4:55003506-55003525 | None:intergenic | 30.0% | |
| TCGAATATTGGAAAAGATGA+AGG | + | chr5.4:55003248-55003267 | MS.gene88772:CDS | 30.0% | |
| ! | CCTTATGTGTCTTATGTTTT+TGG | + | chr5.4:55003673-55003692 | MS.gene88772:intron | 30.0% |
| ! | TGTATCACATCAATTTTTGC+AGG | + | chr5.4:55002986-55003005 | MS.gene88772:intron | 30.0% |
| AAGATAGATAGAGGTCAAAG+GGG | - | chr5.4:55003505-55003524 | None:intergenic | 35.0% | |
| ACAGGTACCTGAAATTCTTT+CGG | + | chr5.4:55003224-55003243 | MS.gene88772:intron | 35.0% | |
| ATAACTCAGTTAGCTCATCA+TGG | + | chr5.4:55003855-55003874 | MS.gene88772:CDS | 35.0% | |
| ATTCGATCCGAAAGAATTTC+AGG | - | chr5.4:55003234-55003253 | None:intergenic | 35.0% | |
| CCATCAATAACTCTCATAAG+AGG | + | chr5.4:55003772-55003791 | MS.gene88772:intron | 35.0% | |
| CCTCTTATGAGAGTTATTGA+TGG | - | chr5.4:55003775-55003794 | None:intergenic | 35.0% | |
| GTAGTTAGGATCATTTGTCT+CGG | + | chr5.4:55003173-55003192 | MS.gene88772:intron | 35.0% | |
| TCAGTTTCCTCTTTATGTCA+TGG | + | chr5.4:55003816-55003835 | MS.gene88772:intron | 35.0% | |
| TCCTAATTTCTACTGACATG+TGG | + | chr5.4:55003539-55003558 | MS.gene88772:intron | 35.0% | |
| TGCAGGTATTACTCATTGTA+TGG | + | chr5.4:55003003-55003022 | MS.gene88772:intron | 35.0% | |
| TTAATGTCAGCTACATCATC+TGG | - | chr5.4:55003285-55003304 | None:intergenic | 35.0% | |
| TTTCAGCAATGTATTTACCC+TGG | - | chr5.4:55004028-55004047 | None:intergenic | 35.0% | |
| ! | GTTTTCCGCTACATTTTTCT+CGG | + | chr5.4:55003578-55003597 | MS.gene88772:intron | 35.0% |
| ! | TTTGAGATGGATGAGGTAAA+AGG | + | chr5.4:55003921-55003940 | MS.gene88772:CDS | 35.0% |
| ! | TTTTCCGCTACATTTTTCTC+GGG | + | chr5.4:55003579-55003598 | MS.gene88772:intron | 35.0% |
| !! | TTCTGGAGTACTGGATTTAA+CGG | + | chr5.4:55003450-55003469 | MS.gene88772:CDS | 35.0% |
| !!! | TTTGGTTTTCCTTCACGTTT+TGG | + | chr5.4:55003339-55003358 | MS.gene88772:CDS | 35.0% |
| CTTTATGTCATGGTTGCAGA+TGG | + | chr5.4:55003826-55003845 | MS.gene88772:intron | 40.0% | |
| GAGGCTGATGCTTTGATATT+TGG | + | chr5.4:55003321-55003340 | MS.gene88772:CDS | 40.0% | |
| GCCACATGTCAGTAGAAATT+AGG | - | chr5.4:55003543-55003562 | None:intergenic | 40.0% | |
| GTATGGACATGTGAACACTA+TGG | + | chr5.4:55003020-55003039 | MS.gene88772:CDS | 40.0% | |
| TAGTCCCGAGAAAAATGTAG+CGG | - | chr5.4:55003586-55003605 | None:intergenic | 40.0% | |
| TCTGCAACCATGACATAAAG+AGG | - | chr5.4:55003826-55003845 | None:intergenic | 40.0% | |
| TGATGTAGCTGACATTAAGC+CGG | + | chr5.4:55003287-55003306 | MS.gene88772:CDS | 40.0% | |
| TGCTTACACAATGTAGACCT+TGG | - | chr5.4:55002858-55002877 | None:intergenic | 40.0% | |
| TGTTGAAGCAACACTTTGGA+GGG | + | chr5.4:55003080-55003099 | MS.gene88772:CDS | 40.0% | |
| TGTTGGAGTTCATGCTTCAT+AGG | + | chr5.4:55003743-55003762 | MS.gene88772:intron | 40.0% | |
| ! | ACTTCCAAAGGTGTATCCAA+GGG | - | chr5.4:55003895-55003914 | None:intergenic | 40.0% |
| ! | ATGGCAAGAGAAGTACACAA+GGG | + | chr5.4:55003039-55003058 | MS.gene88772:CDS | 40.0% |
| ! | TATGGCAAGAGAAGTACACA+AGG | + | chr5.4:55003038-55003057 | MS.gene88772:CDS | 40.0% |
| ! | TCAGCTACATCATCTGGTTT+AGG | - | chr5.4:55003279-55003298 | None:intergenic | 40.0% |
| !! | AAGGTGTTGAAGCAACACTT+TGG | + | chr5.4:55003076-55003095 | MS.gene88772:CDS | 40.0% |
| !! | TCTGGAGTACTGGATTTAAC+GGG | + | chr5.4:55003451-55003470 | MS.gene88772:CDS | 40.0% |
| CATTAAGCCGGAACAACTTG+TGG | + | chr5.4:55003299-55003318 | MS.gene88772:CDS | 45.0% | |
| GAGATGGATGAGGTAAAAGG+AGG | + | chr5.4:55003924-55003943 | MS.gene88772:CDS | 45.0% | |
| GGCATCATACCAAAACGTGA+AGG | - | chr5.4:55003351-55003370 | None:intergenic | 45.0% | |
| GGTATGCTTTATGTTCCCCT+TGG | + | chr5.4:55003876-55003895 | MS.gene88772:CDS | 45.0% | |
| GTGTTGAAGCAACACTTTGG+AGG | + | chr5.4:55003079-55003098 | MS.gene88772:CDS | 45.0% | |
| TGGAAGTGGCATGTTTGAGA+TGG | + | chr5.4:55003908-55003927 | MS.gene88772:CDS | 45.0% | |
| ! | CACTTCCAAAGGTGTATCCA+AGG | - | chr5.4:55003896-55003915 | None:intergenic | 45.0% |
| ! | CTCAAACATGCCACTTCCAA+AGG | - | chr5.4:55003907-55003926 | None:intergenic | 45.0% |
| ! | CTTCCAAAGGTGTATCCAAG+GGG | - | chr5.4:55003894-55003913 | None:intergenic | 45.0% |
| ! | CTTGGATACACCTTTGGAAG+TGG | + | chr5.4:55003894-55003913 | MS.gene88772:CDS | 45.0% |
| ! | GCTACATCATCTGGTTTAGG+AGG | - | chr5.4:55003276-55003295 | None:intergenic | 45.0% |
| ! | TGGCAAGAGAAGTACACAAG+GGG | + | chr5.4:55003040-55003059 | MS.gene88772:CDS | 45.0% |
| ! | TGGCATGTTTGAGATGGATG+AGG | + | chr5.4:55003914-55003933 | MS.gene88772:CDS | 45.0% |
| !! | CTGGAGTACTGGATTTAACG+GGG | + | chr5.4:55003452-55003471 | MS.gene88772:CDS | 45.0% |
| !! | TGGAGTACTGGATTTAACGG+GGG | + | chr5.4:55003453-55003472 | MS.gene88772:CDS | 45.0% |
| AAGGCCTTCTTTGACGCTAC+TGG | + | chr5.4:55003381-55003400 | MS.gene88772:CDS | 50.0% | |
| AAGGGGGCAGCTTCAATTGA+AGG | + | chr5.4:55003057-55003076 | MS.gene88772:CDS | 50.0% | |
| ATACTCACGCTGAGAGTTCC+TGG | - | chr5.4:55003482-55003501 | None:intergenic | 50.0% | |
| CTCTCCAGTAGCGTCAAAGA+AGG | - | chr5.4:55003388-55003407 | None:intergenic | 50.0% | |
| GCAAACCTGCTGGAATCTTC+TGG | + | chr5.4:55003433-55003452 | MS.gene88772:CDS | 50.0% | |
| GGATGAGGTAAAAGGAGGCT+CGG | + | chr5.4:55003929-55003948 | MS.gene88772:CDS | 50.0% | |
| GTAAAAGGAGGCTCGGCTTA+TGG | + | chr5.4:55003936-55003955 | MS.gene88772:CDS | 50.0% | |
| GTACTCCAGAAGATTCCAGC+AGG | - | chr5.4:55003441-55003460 | None:intergenic | 50.0% | |
| GTTCCCCTTGGATACACCTT+TGG | + | chr5.4:55003888-55003907 | MS.gene88772:CDS | 50.0% | |
| TAAGCCGGAACAACTTGTGG+AGG | + | chr5.4:55003302-55003321 | MS.gene88772:CDS | 50.0% | |
| TACTGAGCTAGAGCTTCAGC+AGG | + | chr5.4:55003995-55004014 | MS.gene88772:CDS | 50.0% | |
| TATGATGCCAAGCCAGCTCA+AGG | + | chr5.4:55003362-55003381 | MS.gene88772:CDS | 50.0% | |
| TCAGCCTCCACAAGTTGTTC+CGG | - | chr5.4:55003309-55003328 | None:intergenic | 50.0% | |
| TGACGCTACTGGAGAGTTGT+GGG | + | chr5.4:55003392-55003411 | MS.gene88772:CDS | 50.0% | |
| TTGACGCTACTGGAGAGTTG+TGG | + | chr5.4:55003391-55003410 | MS.gene88772:CDS | 50.0% | |
| ! | AGTACTGGATTTAACGGGGG+TGG | + | chr5.4:55003456-55003475 | MS.gene88772:CDS | 50.0% |
| ! | CTTCAGCAGGCCTTTTACCA+GGG | + | chr5.4:55004008-55004027 | MS.gene88772:CDS | 50.0% |
| ! | GGCAAGAGAAGTACACAAGG+GGG | + | chr5.4:55003041-55003060 | MS.gene88772:CDS | 50.0% |
| ! | TGCTGAAGCTCTAGCTCAGT+AGG | - | chr5.4:55003996-55004015 | None:intergenic | 50.0% |
| !! | GCTGGAATCTTCTGGAGTAC+TGG | + | chr5.4:55003441-55003460 | MS.gene88772:CDS | 50.0% |
| AAGAAGGCCTTGAGCTGGCT+TGG | - | chr5.4:55003372-55003391 | None:intergenic | 55.0% | |
| CATGAACACCCGACACGACA+TGG | - | chr5.4:55003725-55003744 | None:intergenic | 55.0% | |
| CGTCAAAGAAGGCCTTGAGC+TGG | - | chr5.4:55003377-55003396 | None:intergenic | 55.0% | |
| GCTGGAACTTTCGCTGGAGA+TGG | + | chr5.4:55003960-55003979 | MS.gene88772:CDS | 55.0% | |
| GTCGTGTCGGGTGTTCATGT+TGG | + | chr5.4:55003726-55003745 | MS.gene88772:intron | 55.0% | |
| TGCCTGTGTCCATGTCGTGT+CGG | + | chr5.4:55003713-55003732 | MS.gene88772:intron | 55.0% | |
| ! | GCTTCAGCAGGCCTTTTACC+AGG | + | chr5.4:55004007-55004026 | MS.gene88772:CDS | 55.0% |
| ! | TATGGCGCTGGAACTTTCGC+TGG | + | chr5.4:55003954-55003973 | MS.gene88772:CDS | 55.0% |
| ACCCGACACGACATGGACAC+AGG | - | chr5.4:55003718-55003737 | None:intergenic | 60.0% | |
| GCCTGTGTCCATGTCGTGTC+GGG | + | chr5.4:55003714-55003733 | MS.gene88772:intron | 60.0% | |
| TGGATTTAACGGGGGTGGCC+AGG | + | chr5.4:55003461-55003480 | MS.gene88772:CDS | 60.0% | |
| GCACTCGCAGGCAAACCTGC+TGG | + | chr5.4:55003423-55003442 | MS.gene88772:CDS | 65.0% | |
| TGGGCGTCTCAAGCACTCGC+AGG | + | chr5.4:55003411-55003430 | MS.gene88772:CDS | 65.0% | |
| GGAGGCTCGGCTTATGGCGC+TGG | + | chr5.4:55003942-55003961 | MS.gene88772:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 55002845 | 55004070 | 55002845 | ID=MS.gene88772 |
| chr5.4 | mRNA | 55002845 | 55004070 | 55002845 | ID=MS.gene88772.t1;Parent=MS.gene88772 |
| chr5.4 | exon | 55002845 | 55002870 | 55002845 | ID=MS.gene88772.t1.exon1;Parent=MS.gene88772.t1 |
| chr5.4 | CDS | 55002845 | 55002870 | 55002845 | ID=cds.MS.gene88772.t1;Parent=MS.gene88772.t1 |
| chr5.4 | exon | 55003008 | 55003101 | 55003008 | ID=MS.gene88772.t1.exon2;Parent=MS.gene88772.t1 |
| chr5.4 | CDS | 55003008 | 55003101 | 55003008 | ID=cds.MS.gene88772.t1;Parent=MS.gene88772.t1 |
| chr5.4 | exon | 55003228 | 55003493 | 55003228 | ID=MS.gene88772.t1.exon3;Parent=MS.gene88772.t1 |
| chr5.4 | CDS | 55003228 | 55003493 | 55003228 | ID=cds.MS.gene88772.t1;Parent=MS.gene88772.t1 |
| chr5.4 | exon | 55003845 | 55004070 | 55003845 | ID=MS.gene88772.t1.exon4;Parent=MS.gene88772.t1 |
| chr5.4 | CDS | 55003845 | 55004070 | 55003845 | ID=cds.MS.gene88772.t1;Parent=MS.gene88772.t1 |
| Gene Sequence |
| Protein sequence |
