AlfalfaGEDB | MS.gene051349

M. sativa cultivar XinJiangDaYe / MS.gene051349

KEGG: K01512
GO: GO:0003674 GO:0003824 GO:0003998 GO:0016787 GO:0016817 GO:0016818
PFAM: PF00708.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051349.t1	KEH42193.1	99	102	1	0	1	102	64	165	1.40E-51	211.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051349.t1	Q2RQZ4	57.6	92	37	1	11	102	2	91	1.3e-21	103.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051349.t1	A0A072VL74	99.0	102	1	0	1	102	64	165	1.0e-51	211.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049424	MS.gene051349	0.803425	3.51E-49	-1.69E-46
MS.gene049915	MS.gene051349	0.821019	5.04E-53	-1.69E-46
MS.gene050228	MS.gene051349	0.805963	1.04E-49	-1.69E-46
MS.gene050277	MS.gene051349	0.813867	2.06E-51	-1.69E-46
MS.gene050303	MS.gene051349	0.805733	1.16E-49	-1.69E-46
MS.gene050330	MS.gene051349	-0.800069	1.71E-48	-1.69E-46
MS.gene050642	MS.gene051349	0.801832	7.48E-49	-1.69E-46
MS.gene050719	MS.gene051349	0.824379	8.33E-54	-1.69E-46
MS.gene050721	MS.gene051349	0.82973	4.37E-55	-1.69E-46
MS.gene050724	MS.gene051349	0.81934	1.22E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051349.t1	MTR_1g063240	99.020	102	1	0	1	102	64	165	3.73e-72	211

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051349.t1	AT5G03370	72.826	92	23	1	11	102	82	171	1.28e-42	137

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Find 0 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTCCTCTTCTACCAAAA+CGG	+	8439:12040-12059	MS.gene051349:CDS	35.0%
AGTGGAAAATGCGAGGGAAT+TGG	+	8439:12194-12213	MS.gene051349:CDS	45.0%
ATGGTACAGAAACTGGACAG+TGG	+	8439:12176-12195	MS.gene051349:CDS	45.0%
GGAATTGGGGCTAAAAGGAT+GGG	+	8439:12209-12228	MS.gene051349:CDS	45.0%
GGATCATCATCATCACCACA+TGG	-	8439:12360-12379	None:intergenic	45.0%
GTGGAAAATGCGAGGGAATT+GGG	+	8439:12195-12214	MS.gene051349:CDS	45.0%
TAGGAGAGGGTGGTGATAAA+GGG	+	8439:12138-12157	MS.gene051349:intron	45.0%
TGGAAAATGCGAGGGAATTG+GGG	+	8439:12196-12215	MS.gene051349:CDS	45.0%
AAGCTGTGCAGGAAATGGAG+AGG	+	8439:12283-12302	MS.gene051349:CDS	50.0%
ACTGGACAGTGGAAAATGCG+AGG	+	8439:12187-12206	MS.gene051349:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
8439	gene	12026	12413	12026	ID=MS.gene051349
8439	mRNA	12026	12413	12026	ID=MS.gene051349.t1;Parent=MS.gene051349
8439	exon	12026	12061	12026	ID=MS.gene051349.t1.exon1;Parent=MS.gene051349.t1
8439	CDS	12026	12061	12026	ID=cds.MS.gene051349.t1;Parent=MS.gene051349.t1
8439	exon	12141	12413	12141	ID=MS.gene051349.t1.exon2;Parent=MS.gene051349.t1
8439	CDS	12141	12413	12141	ID=cds.MS.gene051349.t1;Parent=MS.gene051349.t1

Gene Sequence

>MS.gene051349

ATGGCGAGTTCTCAAGATTCCTCTTCTACCAAAACGGTGCGCATAGCATAGCTAAATCAATTCAAATTTAATTAATTATTAAGTAATTTTGTATTAATTATTTGTTTTTTTGTAGGAGAGGGTGGTGATAAAGGGGAGAGTGCAGGGAGTATGGTACAGAAACTGGACAGTGGAAAATGCGAGGGAATTGGGGCTAAAAGGATGGGTCCGGAACCGAAGGGATGGTTCTGTGGAGGCTCTGTTTTCCGGTAGCGTCGAAGCTGTGCAGGAAATGGAGAGGAGGTGTCGTCGTGGTCCACCGGATGCTGCTGTTACTGGGCTTGAGGTTTTTCCATGTGGTGATGATGATGATCCTGGTACTGGTTTCCAACGCAAACCAACTGTTTGA

Protein sequence

>MS.gene051349.t1

MASSQDSSSTKTERVVIKGRVQGVWYRNWTVENARELGLKGWVRNRRDGSVEALFSGSVEAVQEMERRCRRGPPDAAVTGLEVFPCGDDDDPGTGFQRKPTV